Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 216 of 373
Found at i:73720133 original size:25 final size:24
Alignment explanation
Indices: 73719881--73720138 Score: 125
Period size: 25 Copynumber: 10.2 Consensus size: 24
73719871 GACTTGCAGG
73719881 AAAGGCTTTCCAAATAACT-TCGCCAC
1 AAAGGCTTT-CAAATAA-TAT-GCCAC
* *
73719907 TAAGGCTTCCTAAATAATATGCCACC
1 AAAGGCTTTC-AAATAATATGCCA-C
* *
73719933 ATAGGCCTTTCAAATAACT-CGCCAC
1 AAAGG-CTTTCAAATAA-TATGCCAC
* *
73719958 AAAGCCTTTTCAGATAATATGCCAC
1 AAAGGC-TTTCAAATAATATGCCAC
* * * *
73719983 ATATGCCTTTCAGATAACT-CGCCAC
1 A-AAGGCTTTCAAATAA-TATGCCAC
*
73720008 AAAGGCTTTCCAGATAATATGCCAC
1 AAAGGCTTT-CAAATAATATGCCAC
* *
73720033 ATAGGCCTCTT-AGATAACTCA--CCAC
1 AAAGG-CT-TTCAAATAA-T-ATGCCAC
*
73720058 AAAGGCTTTCCAAATAATATGTCAC
1 AAAGGCTTT-CAAATAATATGCCAC
* *
73720083 ATAGGCCTTTCAGATAACT-TGCCAC
1 AAAGG-CTTTCAAATAA-TATGCCAC
* *
73720108 AAATGCTTTCTAAATAATATGGCAC
1 AAAGGCTTTC-AAATAATATGCCAC
*
73720133 ATAGGC
1 AAAGGC
73720139 CTCTTAGAGA
Statistics
Matches: 181, Mismatches: 28, Indels: 47
0.71 0.11 0.18
Matches are distributed among these distances:
23 3 0.02
24 18 0.10
25 111 0.61
26 41 0.23
27 8 0.04
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (24 bp):
AAAGGCTTTCAAATAATATGCCAC
Found at i:73724745 original size:46 final size:45
Alignment explanation
Indices: 73724678--73724851 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 45
73724668 TGTAACCCGC
73724678 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * * * *
73724724 CCATAAGTGAACTCGAACTCAACTCAACGATCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * * *
73724770 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTTGGACATTC-CAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* *
73724816 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
73724852 ATGCCCAAAC
Statistics
Matches: 100, Mismatches: 23, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
45 28 0.28
46 44 0.44
47 26 0.26
48 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:73724844 original size:92 final size:93
Alignment explanation
Indices: 73724686--73724856 Score: 265
Period size: 92 Copynumber: 1.8 Consensus size: 93
73724676 GCCCATAAGT
* * *
73724686 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGCGAACTCGAACTCAACTCAA
73724751 CGA-TCTCGGATGCCTAGTTACATCTCTC
66 CGAGT-TCGGATGCCTAGTTACATCTCTC
* * *
73724779 GAACTCGGACTCAACTCAACGAGTTTGGACATTC-CATCCATAAGCGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGCGAACTCGAACTCAACTCAA
73724843 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
73724857 CAAACATCCT
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
92 40 0.56
93 31 0.44
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGCGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:73729427 original size:28 final size:29
Alignment explanation
Indices: 73729396--73729452 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
73729386 CACAAGTATC
*
73729396 ATATAATCC-TCCCAAACACACCAAAATA
1 ATATAATCCATCCAAAACACACCAAAATA
*
73729424 ATATAATCCATCCAAAACACACCAGAATA
1 ATATAATCCATCCAAAACACACCAAAATA
73729453 GCACAGAGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 9 0.35
29 17 0.65
ACGTcount: A:0.51, C:0.30, G:0.02, T:0.18
Consensus pattern (29 bp):
ATATAATCCATCCAAAACACACCAAAATA
Found at i:73729452 original size:29 final size:28
Alignment explanation
Indices: 73729369--73729452 Score: 96
Period size: 28 Copynumber: 3.0 Consensus size: 28
73729359 AACACGCTAG
* * * * *
73729369 TATAATTCTCCATAACACACAAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
* *
73729397 TATAATCCTCCCAAACACACCAAAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
73729425 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
73729453 GCACAGAGTG
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 29 0.63
29 17 0.37
ACGTcount: A:0.48, C:0.29, G:0.02, T:0.21
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:73729516 original size:13 final size:14
Alignment explanation
Indices: 73729493--73729522 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
73729483 GGATATAAAC
73729493 ATCAGCATCTCCAA
1 ATCAGCATCTCCAA
73729507 ATCA-CATCTCCAA
1 ATCAGCATCTCCAA
73729520 ATC
1 ATC
73729523 CCTTCTCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.37, C:0.37, G:0.03, T:0.23
Consensus pattern (14 bp):
ATCAGCATCTCCAA
Found at i:73729641 original size:17 final size:17
Alignment explanation
Indices: 73729619--73729657 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
73729609 TTTATTTATT
*
73729619 TCAATTTCATTTCCATA
1 TCAATTTCAGTTCCATA
*
73729636 TCAATTTCAGTTCCATT
1 TCAATTTCAGTTCCATA
73729653 TCAAT
1 TCAAT
73729658 ATACAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.28, C:0.23, G:0.03, T:0.46
Consensus pattern (17 bp):
TCAATTTCAGTTCCATA
Found at i:73729642 original size:23 final size:24
Alignment explanation
Indices: 73729616--73729664 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
73729606 TTATTTATTT
* *
73729616 ATTTCAATTTCATTTCCATAT-CA
1 ATTTCAATTCCATTTCAATATACA
*
73729639 ATTTCAGTTCCATTTCAATATACA
1 ATTTCAATTCCATTTCAATATACA
73729663 AT
1 AT
73729665 CAATTCAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.33, C:0.20, G:0.02, T:0.45
Consensus pattern (24 bp):
ATTTCAATTCCATTTCAATATACA
Found at i:73730830 original size:7 final size:7
Alignment explanation
Indices: 73730788--73730812 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
73730778 TTTACTTATT
73730788 AATAATA
1 AATAATA
73730795 AATAATA
1 AATAATA
73730802 AATAATA
1 AATAATA
73730809 AATA
1 AATA
73730813 TCTACTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AATAATA
Found at i:73730938 original size:17 final size:17
Alignment explanation
Indices: 73730918--73730951 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
73730908 ATTCACTAAT
73730918 ATAAT-ATCAATTAAATA
1 ATAATAATCAA-TAAATA
73730935 ATAATAATCAATAAATA
1 ATAATAATCAATAAATA
73730952 TCTTTTACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAATAATCAATAAATA
Found at i:73732241 original size:45 final size:44
Alignment explanation
Indices: 73732177--73732271 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 44
73732167 TCCATAGGAT
**
73732177 ATCGATATATGTGTTTTCAAGGAAGACCATGTCTGGGACGTTGGC
1 ATCGATATATGTGTTTTCAAGGAAGACCACATCT-GGACGTTGGC
*
73732222 ATCGATATATGTGTTTTCAAGTAAGACCACATCTGGACGTTGGC
1 ATCGATATATGTGTTTTCAAGGAAGACCACATCTGGACGTTGGC
73732266 ATCGAT
1 ATCGAT
73732272 TTATATATGG
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
44 16 0.34
45 31 0.66
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (44 bp):
ATCGATATATGTGTTTTCAAGGAAGACCACATCTGGACGTTGGC
Found at i:73735539 original size:47 final size:47
Alignment explanation
Indices: 73735427--73735557 Score: 199
Period size: 47 Copynumber: 2.8 Consensus size: 47
73735417 GTACGAGTGA
* * * *
73735427 TACCTTGATTTGACTACGGGCCATGGTATAGGTATTTCAGTGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTA-CTCAGGGAGAAGT
* *
73735475 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGGGAGAAGT
73735522 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
73735558 TATCGATTGA
Statistics
Matches: 77, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
47 44 0.57
48 33 0.43
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGGGAGAAGT
Found at i:73741828 original size:26 final size:26
Alignment explanation
Indices: 73741799--73741854 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
73741789 TGATAAAAAT
73741799 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73741825 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73741851 TGAT
1 TGAT
73741855 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:73748944 original size:22 final size:21
Alignment explanation
Indices: 73748902--73748941 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
73748892 AAACCCAACA
73748902 AGTATCAATACTTTTTAAATG
1 AGTATCAATACTTTTTAAATG
* *
73748923 AGTATCGATATTTTTTAAA
1 AGTATCAATACTTTTTAAA
73748942 ATGTACCGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (21 bp):
AGTATCAATACTTTTTAAATG
Found at i:73757145 original size:21 final size:21
Alignment explanation
Indices: 73757093--73757148 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
73757083 GTGGAAATCT
* * *
73757093 CACACACCCGTGTGGCTAGGG
1 CACACGCCCGTGTGGCCAAGG
* * *
73757114 GACAGGGCCGTGTGGCCAAGG
1 CACACGCCCGTGTGGCCAAGG
73757135 CACACGCCCGTGTG
1 CACACGCCCGTGTG
73757149 AAAATTGACA
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.18, C:0.32, G:0.38, T:0.12
Consensus pattern (21 bp):
CACACGCCCGTGTGGCCAAGG
Found at i:73758899 original size:35 final size:35
Alignment explanation
Indices: 73758825--73758940 Score: 126
Period size: 35 Copynumber: 3.3 Consensus size: 35
73758815 AATACACCCA
* * * *
73758825 AAACACACCAGATGCTCATACGAGCCAATCCC-GCC
1 AAACACATCA-ATGCTCATAAGAGCTAATCCCTGCG
* *
73758860 AAACACATCATTGCTCATAAGAGCTAATCCCTTCG
1 AAACACATCAATGCTCATAAGAGCTAATCCCTGCG
* **
73758895 AAACACACCAATGCTCATAAGATTTAATCCCTGCG
1 AAACACATCAATGCTCATAAGAGCTAATCCCTGCG
*
73758930 GAACACATCAA
1 AAACACATCAA
73758941 ACAAAGAGTA
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
34 18 0.27
35 49 0.73
ACGTcount: A:0.37, C:0.32, G:0.12, T:0.19
Consensus pattern (35 bp):
AAACACATCAATGCTCATAAGAGCTAATCCCTGCG
Found at i:73759234 original size:50 final size:50
Alignment explanation
Indices: 73759159--73759259 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
73759149 CTATTTTACC
73759159 ATGTTATACTATTCAACAATTTATATAGATGTTAAATTTTAAACCGTACA
1 ATGTTATACTATTCAACAATTTATATAGATGTTAAATTTTAAACCGTACA
* *
73759209 ATGTTATAGTATTCAACAATTTATATAGATGTTAAATTTTAAACTGTACA
1 ATGTTATACTATTCAACAATTTATATAGATGTTAAATTTTAAACCGTACA
73759259 A
1 A
73759260 ACTTACCCGG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.41
Consensus pattern (50 bp):
ATGTTATACTATTCAACAATTTATATAGATGTTAAATTTTAAACCGTACA
Found at i:73763407 original size:18 final size:19
Alignment explanation
Indices: 73763380--73763417 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
73763370 TGAACTTTAT
73763380 AAATTCTTTATTCAAAAAC
1 AAATTCTTTATTCAAAAAC
*
73763399 AAATT-TTTATTTAAAAAC
1 AAATTCTTTATTCAAAAAC
73763417 A
1 A
73763418 TTCTTGTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (19 bp):
AAATTCTTTATTCAAAAAC
Found at i:73766189 original size:40 final size:39
Alignment explanation
Indices: 73766126--73766243 Score: 139
Period size: 40 Copynumber: 3.0 Consensus size: 39
73766116 GCAACTTTCA
* * *
73766126 ATAGGTATGGCTCGATAGAGCATACTTTTCAGTGGATTCG
1 ATAGGTATGGCTCGATAAAGCATACATTTCAGTAGATT-G
*
73766166 ATAGGTATGGCTCGA-AAACGCATACATTTCAGTAGATTT
1 ATAGGTATGGCTCGATAAA-GCATACATTTCAGTAGATTG
** *
73766205 AGTAGGTATGGCTCGATAGTGTATACATTTCAGTAGATT
1 A-TAGGTATGGCTCGATAAAGCATACATTTCAGTAGATT
73766244 CAGTAAATAT
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
39 3 0.04
40 64 0.94
41 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.33
Consensus pattern (39 bp):
ATAGGTATGGCTCGATAAAGCATACATTTCAGTAGATTG
Found at i:73768953 original size:30 final size:31
Alignment explanation
Indices: 73768902--73768964 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 31
73768892 GGTTTAATTT
* *
73768902 CAGTCACTCAACTTTTGAAAAA-TAACAAAA
1 CAGTCACTCAACTTATAAAAAAGTAACAAAA
*
73768932 CAGTCACT-AACGTTATAAAAAAGTGACAAAA
1 CAGTCACTCAAC-TTATAAAAAAGTAACAAAA
73768963 CA
1 CA
73768965 ATAACTGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 3 0.11
30 16 0.57
31 9 0.32
ACGTcount: A:0.51, C:0.19, G:0.10, T:0.21
Consensus pattern (31 bp):
CAGTCACTCAACTTATAAAAAAGTAACAAAA
Found at i:73771784 original size:21 final size:21
Alignment explanation
Indices: 73771758--73771797 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
73771748 AACGAGACTT
73771758 CTGATGTGGCAAGTTAACTAG
1 CTGATGTGGCAAGTTAACTAG
*
73771779 CTGATGTGGCTAGTTAACT
1 CTGATGTGGCAAGTTAACT
73771798 TACCACGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.33
Consensus pattern (21 bp):
CTGATGTGGCAAGTTAACTAG
Found at i:73771888 original size:3 final size:3
Alignment explanation
Indices: 73771882--73771948 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
73771872 TTAATAATAG
73771882 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
73771930 AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA A
73771949 TATTCCGCGA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:73772934 original size:30 final size:31
Alignment explanation
Indices: 73772869--73772934 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 31
73772859 ATTGTTAATC
* *
73772869 AGTGACTATTTTGTCACTTTTTTATAACGTT
1 AGTGACTATTTTGTCACTTTTTCATAAAGTT
* *
73772900 AGTGACTGTTTTGTTA-TTTTTCA-AAAGTT
1 AGTGACTATTTTGTCACTTTTTCATAAAGTT
73772929 GAGTGA
1 -AGTGA
73772935 TTGAAATGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 5 0.17
30 11 0.37
31 14 0.47
ACGTcount: A:0.24, C:0.09, G:0.18, T:0.48
Consensus pattern (31 bp):
AGTGACTATTTTGTCACTTTTTCATAAAGTT
Found at i:73782063 original size:19 final size:19
Alignment explanation
Indices: 73782041--73782079 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
73782031 AAGATGATAA
73782041 TAAAATTATCATCTTATTT
1 TAAAATTATCATCTTATTT
73782060 TAAAATTATCATCTTATTT
1 TAAAATTATCATCTTATTT
73782079 T
1 T
73782080 CTCATTTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.54
Consensus pattern (19 bp):
TAAAATTATCATCTTATTT
Found at i:73785168 original size:41 final size:41
Alignment explanation
Indices: 73785104--73785226 Score: 201
Period size: 41 Copynumber: 3.0 Consensus size: 41
73785094 TAAAAGCCAC
* *
73785104 CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
* *
73785145 CGGTGGATCCACGGTCATTAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
*
73785186 CGGTGGATCCACGGTCGTCAAACAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
73785227 TTCTTCCTCC
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
Found at i:73785658 original size:26 final size:27
Alignment explanation
Indices: 73785464--73785691 Score: 188
Period size: 27 Copynumber: 8.4 Consensus size: 27
73785454 TGTCACCCTA
* * * * *
73785464 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * *
73785491 CAAGGTTATTTCGGTAATTTTGCAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
* ** **
73785518 CAATGGTATTTCTATAATTTTTGAAAGT
1 CAAGGGTATTTCGGTAATTTTACAAA-T
* ** *
73785546 TAAGGGTATTTTTGTAATTTTATAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * *
73785573 CAGGGGTATTTCGATAATTTTCCAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
*
73785600 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
73785627 CGAGGGTATTTCGGTAA-TTTACAAGT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* ** *
73785653 CAAGGGAATTTCGGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
*
73785680 CAAAGGTATTTC
1 CAAGGGTATTTC
73785692 AATAATTCTA
Statistics
Matches: 158, Mismatches: 41, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
26 23 0.15
27 115 0.73
28 20 0.13
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAT
Found at i:73789358 original size:173 final size:173
Alignment explanation
Indices: 73789069--73789417 Score: 662
Period size: 173 Copynumber: 2.0 Consensus size: 173
73789059 ATTGGAAGCT
73789069 ATTATTGTAAGCAAATTCAATCAGCGATAGATATTTCTCCTAGCTACCTTCAAACTCAAGAATGC
1 ATTATTGTAAGCAAATTCAATCAGCGATAGATATTTCTCCTAGCTACCTTCAAACTCAAGAATGC
73789134 AACAACGCAACATATCCTCAAGTATCTGAATAACTCATTAGGATTGACCATCCGTTTGCGGGTGA
66 AACAACGCAACATATCCTCAAGTATCTGAATAACTCATTAGGATTGACCATCCGTTTGCGGGTGA
*
73789199 AATGCAGTGCTAAAATGTAGCTTTGTACCTAAAGCTTCTTGCA
131 AATGCAGTGCTAAAATGTACCTTTGTACCTAAAGCTTCTTGCA
*
73789242 ATTATTGTAAGCAAATTCAATCAGCGATAGATATTTCTCCTAGCTACCTTCAAACTCAATAATGC
1 ATTATTGTAAGCAAATTCAATCAGCGATAGATATTTCTCCTAGCTACCTTCAAACTCAAGAATGC
* *
73789307 AACAATGCAACATATCCTCAAGTATCTGAATAACTCATTCGGATTGACCATCCGTTTGCGGGTGA
66 AACAACGCAACATATCCTCAAGTATCTGAATAACTCATTAGGATTGACCATCCGTTTGCGGGTGA
73789372 AATGCAGTGCTAAAATGTACCTTTGTACCTAAAGCTTCTTGCA
131 AATGCAGTGCTAAAATGTACCTTTGTACCTAAAGCTTCTTGCA
73789415 ATT
1 ATT
73789418 TCTTCAAAAA
Statistics
Matches: 172, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
173 172 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.30
Consensus pattern (173 bp):
ATTATTGTAAGCAAATTCAATCAGCGATAGATATTTCTCCTAGCTACCTTCAAACTCAAGAATGC
AACAACGCAACATATCCTCAAGTATCTGAATAACTCATTAGGATTGACCATCCGTTTGCGGGTGA
AATGCAGTGCTAAAATGTACCTTTGTACCTAAAGCTTCTTGCA
Found at i:73791470 original size:45 final size:45
Alignment explanation
Indices: 73791406--73791500 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 45
73791396 CCAAAACATG
* * * *
73791406 TGTCATATGTATCACGAACTCAGACCACAACTCGATGAGTTCGGA
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGA
* *
73791451 TGTCACATATATCATGAACTCAGACCACAACTTAATGAGTTCAGA
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGA
73791496 TGTCA
1 TGTCA
73791501 TATTTACTAG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGA
Found at i:73801979 original size:55 final size:53
Alignment explanation
Indices: 73801892--73802146 Score: 263
Period size: 55 Copynumber: 4.8 Consensus size: 53
73801882 ATTAGGGTTT
*
73801892 AAGGATACCATATAAGACCATGCCAATG-CATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAA-GACATGGCAA-TGGTAA-GTTTCTAAGGC
* * * * * *
73801947 AAGGAAATCATGTAAGACCATGTCAAGACATGGCACTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT--TCTAAGGC
* * * *
73802002 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTC-TAAGGC
*
73802055 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTCTAAGGC
* * *
73802104 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG
73802147 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 24, Indels: 20
0.79 0.11 0.09
Matches are distributed among these distances:
49 40 0.24
52 7 0.04
53 42 0.25
54 10 0.06
55 66 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTCTAAGGC
Found at i:73802098 original size:108 final size:110
Alignment explanation
Indices: 73801899--73802099 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
73801889 TTTAAGGATA
* *
73801899 CCATATAAGACCATGCCAATGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
73801964 CCATGTCAAGACATGGCACTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
73802009 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
73802071 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
73802100 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.58
109 7 0.08
110 25 0.30
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (110 bp):
CCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:73805053 original size:24 final size:24
Alignment explanation
Indices: 73805021--73805069 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
73805011 ATAAATGTAA
73805021 ATCAACCAATTTCGA-ATTAACTAC
1 ATCAACCAATTTC-ACATTAACTAC
*
73805045 ATCAGCCAATTTCACATTAACTAC
1 ATCAACCAATTTCACATTAACTAC
73805069 A
1 A
73805070 AACCTTTCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.41, C:0.27, G:0.04, T:0.29
Consensus pattern (24 bp):
ATCAACCAATTTCACATTAACTAC
Found at i:73821492 original size:22 final size:22
Alignment explanation
Indices: 73821440--73821492 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
73821430 GGTGGCTTGA
*
73821440 GTTATTGAGAGATTATGATATG
1 GTTATTGATAGATTATGATATG
73821462 GTTATTGATAGATTATGATATG
1 GTTATTGATAGATTATGATATG
73821484 GTTATTGAT
1 GTTATTGAT
73821493 TACCATCCAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (22 bp):
GTTATTGATAGATTATGATATG
Found at i:73829931 original size:260 final size:260
Alignment explanation
Indices: 73829463--73829982 Score: 1031
Period size: 260 Copynumber: 2.0 Consensus size: 260
73829453 TCCTAATTAG
73829463 CTTCAGAATTTGGGTTTTATCGAGTTATTATTTATTATCTATCGACCTCTAACTAATTAACTAAT
1 CTTCAGAATTTGGGTTTTATCGAGTTATTATTTATTATCTATCGACCTCTAACTAATTAACTAAT
73829528 CGAACAATACACGCTTATCCCTCGACCTTACTTTCTTGATTGAGATAAATTATGATTTACTCGGT
66 CGAACAATACACGCTTATCCCTCGACCTTACTTTCTTGATTGAGATAAATTATGATTTACTCGGT
73829593 AAACTTATCTCTCAATCTCGTTTATCCTAAACTACTTCCTAGGGTTGCCACTTCCTAGGGTTTAA
131 AAACTTATCTCTCAATCTCGTTTATCCTAAACTACTTCCTAGGGTTGCCACTTCCTAGGGTTTAA
73829658 TCGCATATAATTTAAACCAACTCAGATTTAAACCTTAATTCATCCGTTAATTAGTTACACATCCA
196 TCGCATATAATTTAAACCAACTCAGATTTAAACCTTAATTCATCCGTTAATTAGTTACACATCCA
*
73829723 CTTCAGTATTTGGGTTTTATCGAGTTATTATTTATTATCTATCGACCTCTAACTAATTAACTAAT
1 CTTCAGAATTTGGGTTTTATCGAGTTATTATTTATTATCTATCGACCTCTAACTAATTAACTAAT
73829788 CGAACAATACACGCTTATCCCTCGACCTTACTTTCTTGATTGAGATAAATTATGATTTACTCGGT
66 CGAACAATACACGCTTATCCCTCGACCTTACTTTCTTGATTGAGATAAATTATGATTTACTCGGT
73829853 AAACTTATCTCTCAATCTCGTTTATCCTAAACTACTTCCTAGGGTTGCCACTTCCTAGGGTTTAA
131 AAACTTATCTCTCAATCTCGTTTATCCTAAACTACTTCCTAGGGTTGCCACTTCCTAGGGTTTAA
73829918 TCGCATATAATTTAAACCAACTCAGATTTAAACCTTAATTCATCCGTTAATTAGTTACACATCCA
196 TCGCATATAATTTAAACCAACTCAGATTTAAACCTTAATTCATCCGTTAATTAGTTACACATCCA
73829983 TTCGTTAATG
Statistics
Matches: 259, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
260 259 1.00
ACGTcount: A:0.29, C:0.22, G:0.11, T:0.38
Consensus pattern (260 bp):
CTTCAGAATTTGGGTTTTATCGAGTTATTATTTATTATCTATCGACCTCTAACTAATTAACTAAT
CGAACAATACACGCTTATCCCTCGACCTTACTTTCTTGATTGAGATAAATTATGATTTACTCGGT
AAACTTATCTCTCAATCTCGTTTATCCTAAACTACTTCCTAGGGTTGCCACTTCCTAGGGTTTAA
TCGCATATAATTTAAACCAACTCAGATTTAAACCTTAATTCATCCGTTAATTAGTTACACATCCA
Found at i:73840469 original size:206 final size:206
Alignment explanation
Indices: 73840115--73840488 Score: 748
Period size: 206 Copynumber: 1.8 Consensus size: 206
73840105 TGAAAAATCC
73840115 GATTCATTAAATCCATGAAAGCAGCAGGAGCATTAGTCAAACCAAATGACATTACCAGGAACTCA
1 GATTCATTAAATCCATGAAAGCAGCAGGAGCATTAGTCAAACCAAATGACATTACCAGGAACTCA
73840180 TAGTGACCATATCGAGTTTTGAAAATAGTCTTTGGTACATCATACTCTTTGACCTTCAATTGATA
66 TAGTGACCATATCGAGTTTTGAAAATAGTCTTTGGTACATCATACTCTTTGACCTTCAATTGATA
73840245 ATACCGGGATCTGATATCTATCTTTGAAAATACTGCAACACCTTTTAATTGATCAAAAATCATCA
131 ATACCGGGATCTGATATCTATCTTTGAAAATACTGCAACACCTTTTAATTGATCAAAAATCATCA
73840310 ATACTGCAAAG
196 ATACTGCAAAG
73840321 GATTCATTAAATCCATGAAAGCAGCAGGAGCATTAGTCAAACCAAATGACATTACCAGGAACTCA
1 GATTCATTAAATCCATGAAAGCAGCAGGAGCATTAGTCAAACCAAATGACATTACCAGGAACTCA
73840386 TAGTGACCATATCGAGTTTTGAAAATAGTCTTTGGTACATCATACTCTTTGACCTTCAATTGATA
66 TAGTGACCATATCGAGTTTTGAAAATAGTCTTTGGTACATCATACTCTTTGACCTTCAATTGATA
73840451 ATACCGGGATCTGATATCTATCTTTGAAAATACTGCAA
131 ATACCGGGATCTGATATCTATCTTTGAAAATACTGCAA
73840489 AGGATATTTA
Statistics
Matches: 168, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
206 168 1.00
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (206 bp):
GATTCATTAAATCCATGAAAGCAGCAGGAGCATTAGTCAAACCAAATGACATTACCAGGAACTCA
TAGTGACCATATCGAGTTTTGAAAATAGTCTTTGGTACATCATACTCTTTGACCTTCAATTGATA
ATACCGGGATCTGATATCTATCTTTGAAAATACTGCAACACCTTTTAATTGATCAAAAATCATCA
ATACTGCAAAG
Found at i:73843999 original size:12 final size:12
Alignment explanation
Indices: 73843982--73844009 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
73843972 TGTACAAGGT
73843982 CGTGTGCTAGGC
1 CGTGTGCTAGGC
73843994 CGTGTGCTAGGC
1 CGTGTGCTAGGC
73844006 CGTG
1 CGTG
73844010 CCAATCCTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.25, G:0.43, T:0.25
Consensus pattern (12 bp):
CGTGTGCTAGGC
Found at i:73854343 original size:119 final size:120
Alignment explanation
Indices: 73854102--73854359 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 120
73854092 AAATCACATA
* * ** *
73854102 CCTTCGGAATTTAA-CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAG
1 CCTTCGGGACTTAACCCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAG
* *
73854166 TAACTCGCACAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACAAATG
66 TAACTCGCACAAATGCCTTCGGGACTTAACCCGAATATAGTAACTAGCACAAATG
* * * *
73854221 CCTTCGGGACTTAACCCGGATTTAGTTACTCGCACCAATGCCTTCGGG-CTTAGCCCGGA-ATTA
1 CCTTCGGGACTTAACCCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATA-TA
* ** * * *
73854284 GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-G
65 GTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGAATATAGTAAC-TAGCACAAATG
*
73854340 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
73854360 CATCATTCAA
Statistics
Matches: 117, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
118 4 0.03
119 77 0.66
120 36 0.31
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (120 bp):
CCTTCGGGACTTAACCCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAG
TAACTCGCACAAATGCCTTCGGGACTTAACCCGAATATAGTAACTAGCACAAATG
Found at i:73854359 original size:40 final size:40
Alignment explanation
Indices: 73854116--73854359 Score: 273
Period size: 40 Copynumber: 6.1 Consensus size: 40
73854106 CGGAATTTAA
** *
73854116 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
73854156 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
73854196 CCGAATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
73854236 CCGGATTTAGTTACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
73854275 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
73854315 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
73854355 CCGGA
1 CCGGA
73854360 CATCATTCAA
Statistics
Matches: 175, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 31 0.18
40 130 0.74
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:73858465 original size:40 final size:40
Alignment explanation
Indices: 73858374--73858542 Score: 198
Period size: 39 Copynumber: 4.3 Consensus size: 40
73858364 TCCTCGTTCA
* * * * *
73858374 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
73858413 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
73858453 AATGCCTTCGGGACTTAACCC-GCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
73858492 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
73858532 AAGGCCTTCGG
1 AATGCCTTCGG
73858543 ATCTTAGTCC
Statistics
Matches: 110, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 68 0.62
40 42 0.38
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:73858503 original size:79 final size:79
Alignment explanation
Indices: 73858372--73858542 Score: 209
Period size: 79 Copynumber: 2.2 Consensus size: 79
73858362 GCTCCTCGTT
* * * * *
73858372 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACCATGCCTTCGGGACGTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACAATGCCCTCGGGACGTAACCCGGA
73858437 TTTAACAACTCGCA
66 TTTAACAACTCGCA
* * * *
73858451 CGAATGCCTTCGGGACTTAACCC-GCTTTAATAACTCGCACGAATGCCCTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACAC-AATGCCCTCGGGACGTAACCCGG
** *
73858515 ATTTAGTATCTCGCA
65 ATTTAACAACTCGCA
*
73858530 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
73858543 ATCTTAGTCC
Statistics
Matches: 77, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.18
79 63 0.82
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.23
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACAATGCCCTCGGGACGTAACCCGGA
TTTAACAACTCGCA
Found at i:73866439 original size:40 final size:40
Alignment explanation
Indices: 73866256--73866425 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 40
73866246 TCCTCGTTCA
* * * * * *
73866256 AATGCCTTTGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
73866295 AATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
73866335 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
73866375 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
73866415 AAGGCCTTCGG
1 AATGCCTTCGG
73866426 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 32 0.28
40 83 0.72
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:73884244 original size:44 final size:45
Alignment explanation
Indices: 73884151--73884285 Score: 173
Period size: 45 Copynumber: 3.0 Consensus size: 45
73884141 CCAAAACATG
* * * **
73884151 TGTCATATATATCATGAACCCAGACCTCAACTCAATGAGTTTGGA
1 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
* * *
73884196 TGTCACATATATCATGAACTCA-AACACATCTCAATAAGTTCAGA
1 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
* *
73884240 TGTCACATGTATTATGAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
73884285 T
1 T
73884286 TACATAATTC
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
44 36 0.47
45 40 0.53
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.28
Consensus pattern (45 bp):
TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
Found at i:73888366 original size:27 final size:27
Alignment explanation
Indices: 73888335--73888513 Score: 200
Period size: 27 Copynumber: 6.6 Consensus size: 27
73888325 TAAATTGTAC
73888335 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
73888362 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73888388 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
73888416 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
73888444 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
73888471 AGCACTAAGTGTGCGAGTTGA-TCATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
*
73888498 AGCACTGAGTGTGCGA
1 AGCACTAAGTGTGCGA
73888514 ACTCAATATA
Statistics
Matches: 129, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 105 0.81
28 23 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:73888503 original size:82 final size:81
Alignment explanation
Indices: 73888332--73888513 Score: 240
Period size: 82 Copynumber: 2.2 Consensus size: 81
73888322 GATTAAATTG
* *
73888332 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
73888397 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
73888413 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* *
73888477 AAGTGTGCGAGTTGATCA
64 AAGTGTGCGAATTGACCA
* *
73888495 TATAGCACTGAGTGTGCGA
1 TACAGCACTAAGTGTGCGA
73888514 ACTCAATATA
Statistics
Matches: 86, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 68 0.79
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:73893850 original size:13 final size:13
Alignment explanation
Indices: 73893832--73893858 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
73893822 GAAATAATCG
73893832 CACATGGGCGTGT
1 CACATGGGCGTGT
73893845 CACATGGGCGTGT
1 CACATGGGCGTGT
73893858 C
1 C
73893859 CCTACCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.22
Consensus pattern (13 bp):
CACATGGGCGTGT
Found at i:73898304 original size:40 final size:40
Alignment explanation
Indices: 73898258--73898442 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
73898248 CTTGCGTAAG
* * *
73898258 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
73898298 GCCTTCGGGACTTAGCCCGGATACAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
73898338 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
73898378 GCCTTCAGATCTTAGTCC-GATTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGA-TATAGTCA-CTAGCACAAAT
*
73898419 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
73898443 CATTCGAATA
Statistics
Matches: 117, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
39 3 0.03
40 86 0.74
41 26 0.22
42 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:73900587 original size:67 final size:63
Alignment explanation
Indices: 73900441--73900587 Score: 154
Period size: 67 Copynumber: 2.3 Consensus size: 63
73900431 ATATAGTTCG
* * * *
73900441 GCTCTCTTGTACACATGGTGAACACTTAGTACCACCCATGTGACCTAGCCAGTTTATCTCGTA
1 GCTCTCTTGTACACATGGTGAACACTTAGAACCACCCATGCGACCTAGCCAGTATATCCCGTA
** * *
73900504 GCTCTCTTGT-CTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACA-TATATCC
1 GCTCTCTTGTAC-ACATGGTG---AACACTTAGAACCACCCATGCGACCTAGC--CAGTATATCC
73900567 CGTA
60 CGTA
73900571 GCTCTCTTGTACACATG
1 GCTCTCTTGTACACATG
73900588 ATGTGCACTC
Statistics
Matches: 69, Mismatches: 8, Indels: 10
0.79 0.09 0.11
Matches are distributed among these distances:
62 1 0.01
63 18 0.26
66 23 0.33
67 24 0.35
68 3 0.04
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.31
Consensus pattern (63 bp):
GCTCTCTTGTACACATGGTGAACACTTAGAACCACCCATGCGACCTAGCCAGTATATCCCGTA
Found at i:73901325 original size:30 final size:30
Alignment explanation
Indices: 73901291--73901351 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
73901281 TCCTTAACTC
73901291 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
73901321 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
73901351 A
1 A
73901352 GGCTCGGAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:73908126 original size:92 final size:94
Alignment explanation
Indices: 73907963--73908228 Score: 283
Period size: 94 Copynumber: 2.8 Consensus size: 94
73907953 TTTGTGTGCC
* * * *
73907963 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTACGA-TAT-AGTGTCAGTGTAAGACCATGTCTG
73908027 GGACATGGCATC-G-ACATTGAGA-CGAGAGCT
64 GGACATGGCATCAGCACA--GAGAGCGAGAGCT
* *
73908057 AGTGTAAGACATGTTTGGGACATGCATCAGCTACGAGAT-GTGTCAGTGTAAGACCATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTACGATATAGTGTCAGTGTAAGACCATGTCTGGG
* *
73908121 ACATGGCATCAGCACAGATATGTGAGAGCT
66 ACATGGCATCAGCACAGAGA-GCGAGAGCT
* * * * *
73908151 AGTGTAAGACCAAGTCTGGGACATGGCATCGACCT-CGATTTCGATAGTTAGTGTAAGACCATGT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-AGCTACGATATAG-T-GTCAGTGTAAGACCATGT
73908215 CTGGGACATGGCAT
61 CTGGGACATGGCAT
73908229 TGGTATTATA
Statistics
Matches: 147, Mismatches: 14, Indels: 17
0.83 0.08 0.10
Matches are distributed among these distances:
92 36 0.24
93 1 0.01
94 52 0.35
95 13 0.09
96 9 0.06
97 4 0.03
98 1 0.01
99 31 0.21
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTACGATATAGTGTCAGTGTAAGACCATGTCTGGG
ACATGGCATCAGCACAGAGAGCGAGAGCT
Found at i:73908936 original size:49 final size:49
Alignment explanation
Indices: 73908864--73908963 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
73908854 TGTTATGTAG
73908864 GTTAGTGCAAGTAAGGGTGGCAAAAAGGCTTGGTAAATAGCCTTATTTT
1 GTTAGTGCAAGTAAGGGTGGCAAAAAGGCTTGGTAAATAGCCTTATTTT
73908913 GTTAGTGCAAGTAAGGGTGGCAAAAAGGCTTGGTAAATAGCCTTATTTT
1 GTTAGTGCAAGTAAGGGTGGCAAAAAGGCTTGGTAAATAGCCTTATTTT
73908962 GT
1 GT
73908964 CCACACGGGT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.30, C:0.10, G:0.29, T:0.31
Consensus pattern (49 bp):
GTTAGTGCAAGTAAGGGTGGCAAAAAGGCTTGGTAAATAGCCTTATTTT
Found at i:73909173 original size:43 final size:43
Alignment explanation
Indices: 73909125--73909213 Score: 151
Period size: 43 Copynumber: 2.1 Consensus size: 43
73909115 ATCTCAGCCG
* *
73909125 TGTAGAGGACACGGCCTCCGGCCATGGGCGTGTGCCTTGGCCA
1 TGTAGAGGACACGGCCTCCGGCAACGGGCGTGTGCCTTGGCCA
*
73909168 TGTAGAGGACACGGCCTCTGGCAACGGGCGTGTGCCTTGGCCA
1 TGTAGAGGACACGGCCTCCGGCAACGGGCGTGTGCCTTGGCCA
73909211 TGT
1 TGT
73909214 GCCCCTTATT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (43 bp):
TGTAGAGGACACGGCCTCCGGCAACGGGCGTGTGCCTTGGCCA
Found at i:73909531 original size:28 final size:28
Alignment explanation
Indices: 73909468--73909531 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
73909458 GCCACACGGG
* *
73909468 CATGTTGCCCTTCCACAAAGGTGTGTTC
1 CATGTTTCCCTTCCACAAAGGCGTGTTC
* * * *
73909496 CCTATTTCCCTTCTACACAGGCGTGTTC
1 CATGTTTCCCTTCCACAAAGGCGTGTTC
73909524 CATGTTTC
1 CATGTTTC
73909532 AAGGGTCATT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.16, C:0.31, G:0.17, T:0.36
Consensus pattern (28 bp):
CATGTTTCCCTTCCACAAAGGCGTGTTC
Found at i:73917151 original size:29 final size:30
Alignment explanation
Indices: 73917098--73917155 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
73917088 CGAAAGTTTT
73917098 GGCACTAAGTGTGCGATTTAAACTAGCTTG
1 GGCACTAAGTGTGCGATTTAAACTAGCTTG
73917128 GGCACTAAGTGTGCGATTT-AACTAGCTT
1 GGCACTAAGTGTGCGATTTAAACTAGCTT
73917156 CGGCTATTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.32
30 19 0.68
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (30 bp):
GGCACTAAGTGTGCGATTTAAACTAGCTTG
Found at i:73917182 original size:39 final size:41
Alignment explanation
Indices: 73917128--73917245 Score: 125
Period size: 39 Copynumber: 2.8 Consensus size: 41
73917118 AACTAGCTTG
*
73917128 GGCACTAAGTGTGCGATTTAACTAGCTTCGGCTATTT-GA-
1 GGCACTAAGTGTGCGATATAACTAGCTTCGGCTATTTAGAT
*
73917167 GGCACTAAGTGTGCGATACTGACTTAG-TCTCGGCTATTTGAGAT
1 GGCACTAAGTGTGCGATA-TAAC-TAGCT-TCGGCTATTT-AGAT
* **
73917211 GGCATTAAGTGTGCGGATATATTTAGCTTCGGCTA
1 GGCACTAAGTGTGC-GATATAACTAGCTTCGGCTA
73917246 ACCTTATAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 12
0.78 0.07 0.14
Matches are distributed among these distances:
39 17 0.26
40 4 0.06
41 13 0.20
43 12 0.18
44 15 0.23
45 4 0.06
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (41 bp):
GGCACTAAGTGTGCGATATAACTAGCTTCGGCTATTTAGAT
Found at i:73921639 original size:28 final size:28
Alignment explanation
Indices: 73921607--73921675 Score: 120
Period size: 28 Copynumber: 2.5 Consensus size: 28
73921597 CAATGCCTCA
* *
73921607 CACACTAAGTGCCATACTGGATATCTTG
1 CACACTAAGTGCCACACTCGATATCTTG
73921635 CACACTAAGTGCCACACTCGATATCTTG
1 CACACTAAGTGCCACACTCGATATCTTG
73921663 CACACTAAGTGCC
1 CACACTAAGTGCC
73921676 GTACATAGCC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (28 bp):
CACACTAAGTGCCACACTCGATATCTTG
Found at i:73921724 original size:40 final size:40
Alignment explanation
Indices: 73921663--73921756 Score: 125
Period size: 40 Copynumber: 2.4 Consensus size: 40
73921653 CGATATCTTG
* *
73921663 CACACTAAGTGCCGTACATAGCCGAAGCTATCTCCAATCA
1 CACACTAAGTGCCATACATAGCCAAAGCTATCTCCAATCA
* * * * *
73921703 CACACTAAGTTCCATATATAGCCAAAGCTATGTCGAATCG
1 CACACTAAGTGCCATACATAGCCAAAGCTATCTCCAATCA
73921743 CACACTAAGTGCCA
1 CACACTAAGTGCCA
73921757 CAAATAGTCG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.34, C:0.30, G:0.15, T:0.21
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCAAAGCTATCTCCAATCA
Found at i:73924248 original size:30 final size:30
Alignment explanation
Indices: 73924212--73924295 Score: 141
Period size: 30 Copynumber: 2.8 Consensus size: 30
73924202 GTATGCTAAA
*
73924212 CGATGGTCGAAACCATCCCTTTTCTTTAAT
1 CGATGGTCAAAACCATCCCTTTTCTTTAAT
*
73924242 CGATGGTCAAAACCATCCATTTTCTTTAAT
1 CGATGGTCAAAACCATCCCTTTTCTTTAAT
*
73924272 CGATAGTCAAAACCATCCCTTTTC
1 CGATGGTCAAAACCATCCCTTTTC
73924296 ATATTTGATA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.35
Consensus pattern (30 bp):
CGATGGTCAAAACCATCCCTTTTCTTTAAT
Found at i:73926417 original size:28 final size:28
Alignment explanation
Indices: 73926377--73926436 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
73926367 CTTTAATTAA
73926377 GTATTGTACGATTGTTTTGAACATTTCC
1 GTATTGTACGATTGTTTTGAACATTTCC
73926405 GTATTGTACGATTGTTTTGAACATTTCC
1 GTATTGTACGATTGTTTTGAACATTTCC
73926433 GTAT
1 GTAT
73926437 AACCAATTGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.22, C:0.13, G:0.18, T:0.47
Consensus pattern (28 bp):
GTATTGTACGATTGTTTTGAACATTTCC
Found at i:73927281 original size:17 final size:18
Alignment explanation
Indices: 73927254--73927287 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
73927244 TTTTATAGTT
73927254 ATTTTTGTTATATTTTAC
1 ATTTTTGTTATATTTTAC
*
73927272 ATTTTT-TTATCTTTTA
1 ATTTTTGTTATATTTTA
73927288 AGTAAAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.06, G:0.03, T:0.71
Consensus pattern (18 bp):
ATTTTTGTTATATTTTAC
Found at i:73927514 original size:20 final size:20
Alignment explanation
Indices: 73927473--73927513 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
73927463 TATTATAATT
*
73927473 ATTTTAATAAATATATTAAA
1 ATTTTAATAAATATAATAAA
*
73927493 ATTTTAATAAAATGTAATAAA
1 ATTTTAAT-AAATATAATAAA
73927514 TAATTAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (20 bp):
ATTTTAATAAATATAATAAA
Found at i:73946894 original size:61 final size:61
Alignment explanation
Indices: 73946820--73946944 Score: 164
Period size: 61 Copynumber: 2.0 Consensus size: 61
73946810 TCTAAGTATC
* * *
73946820 TAAGTTTTTTTTTTG-TCTAATTTGAT-TTTAAAATTTGACATTTTTTTCTTAATTTGATACT
1 TAAGTTTTTTTTTTGTTC-AATTTGATAATT-AAATTTGACATTTTTTCCCTAATTTGATACT
* * *
73946881 TAAGTTTTTTTTTTGTTCAATTTGATAATTGAATTTGACATTTTTTCCCTATTTTGATATT
1 TAAGTTTTTTTTTTGTTCAATTTGATAATTAAATTTGACATTTTTTCCCTAATTTGATACT
73946942 TAA
1 TAA
73946945 ACTTTGTTTG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
61 52 0.93
62 4 0.07
ACGTcount: A:0.25, C:0.07, G:0.09, T:0.59
Consensus pattern (61 bp):
TAAGTTTTTTTTTTGTTCAATTTGATAATTAAATTTGACATTTTTTCCCTAATTTGATACT
Found at i:73946965 original size:59 final size:60
Alignment explanation
Indices: 73946851--73946965 Score: 142
Period size: 61 Copynumber: 1.9 Consensus size: 60
73946841 TTGATTTTAA
* * ** * *
73946851 AATTTGACATTTTTTTCTTAATTTGATACTTAAGTTTTTTTTTTGTTCAATTTGATAATTG
1 AATTTGACATTTTTTCCCTAATTTGATACTTAAG-ACTTTGTTTGTCCAATTTGATAATTG
* *
73946912 AATTTGACATTTTTTCCCTATTTTGATATTTAA-ACTTTGTTTGTCCAATTTGAT
1 AATTTGACATTTTTTCCCTAATTTGATACTTAAGACTTTGTTTGTCCAATTTGAT
73946966 GCCTAAAATT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
59 17 0.37
61 29 0.63
ACGTcount: A:0.24, C:0.10, G:0.10, T:0.57
Consensus pattern (60 bp):
AATTTGACATTTTTTCCCTAATTTGATACTTAAGACTTTGTTTGTCCAATTTGATAATTG
Found at i:73954131 original size:15 final size:16
Alignment explanation
Indices: 73954107--73954162 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
73954097 AAAATTATTG
*
73954107 AAATTATAAAAA-TAA
1 AAATTTTAAAAAGTAA
* *
73954122 AAATTTTAAAAATTACT
1 AAATTTTAAAAAGTA-A
*
73954139 AAA-TTAAAAAAGTAA
1 AAATTTTAAAAAGTAA
73954154 AAATTTTAA
1 AAATTTTAA
73954163 TATTTTGAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
15 14 0.44
16 15 0.47
17 3 0.09
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (16 bp):
AAATTTTAAAAAGTAA
Found at i:73954155 original size:32 final size:33
Alignment explanation
Indices: 73954096--73954162 Score: 102
Period size: 32 Copynumber: 2.1 Consensus size: 33
73954086 AAAAGTTACA
*
73954096 AAAAATTATTGAAATTATAAAAATAAAAATTTT
1 AAAAATTACTGAAATTATAAAAATAAAAATTTT
73954129 AAAAATTACT-AAATTA-AAAAAGTAAAAATTTT
1 AAAAATTACTGAAATTATAAAAA-TAAAAATTTT
73954161 AA
1 AA
73954163 TATTTTGAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
31 5 0.16
32 18 0.56
33 9 0.28
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (33 bp):
AAAAATTACTGAAATTATAAAAATAAAAATTTT
Found at i:73954536 original size:17 final size:18
Alignment explanation
Indices: 73954514--73954551 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
73954504 CCTTAAAAAA
*
73954514 TTTGAATCC-TAATGTTT
1 TTTGAATCCTTAATATTT
73954531 TTTGAATCCTTAATATTT
1 TTTGAATCCTTAATATTT
73954549 TTT
1 TTT
73954552 TATCACAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.24, C:0.11, G:0.08, T:0.58
Consensus pattern (18 bp):
TTTGAATCCTTAATATTT
Found at i:73960467 original size:37 final size:37
Alignment explanation
Indices: 73960411--73960511 Score: 159
Period size: 37 Copynumber: 2.7 Consensus size: 37
73960401 CGAATAGTCC
*
73960411 CCACACGTAGTTATCGGGTCTTACCC-AGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGA-ACAAAATCT
* *
73960448 CCACACGTAGTCATTGGGTCTTACCCGAACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGAACAAAATCT
73960485 CCACACGTAGTCATCGGGTCTTACCCG
1 CCACACGTAGTCATCGGGTCTTACCCG
73960512 GAATATATTT
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
37 58 0.98
38 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGAACAAAATCT
Found at i:73960712 original size:48 final size:48
Alignment explanation
Indices: 73960654--73961244 Score: 1047
Period size: 48 Copynumber: 12.3 Consensus size: 48
73960644 ATATACACAC
* *
73960654 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
73960702 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
73960750 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
73960798 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
73960846 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
73960894 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
73960942 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
73960990 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
73961038 ATCTCATACATATTTCTCATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
73961086 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
73961134 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
73961182 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
73961230 ATCTCATACATATTT
1 ATCTCATACATATTT
73961245 ATCTTGTACA
Statistics
Matches: 523, Mismatches: 20, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 523 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:73968320 original size:40 final size:40
Alignment explanation
Indices: 73968246--73968507 Score: 438
Period size: 40 Copynumber: 6.6 Consensus size: 40
73968236 AACCCAAGTA
* *
73968246 CCTTCGGGAATTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
73968285 CCTTCGGGTCTTAGCCCGGATACAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
73968325 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
73968365 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
73968405 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
73968445 CCTTCGGGACTTAGCTCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
73968485 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
73968508 CATCCGAATA
Statistics
Matches: 209, Mismatches: 12, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
39 12 0.06
40 196 0.94
41 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:73976250 original size:40 final size:40
Alignment explanation
Indices: 73976181--73976425 Score: 361
Period size: 40 Copynumber: 6.2 Consensus size: 40
73976171 AACCCAAGTA
* **
73976181 CCTTCGGGATTTAG-CCGGATATAACAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
73976220 CCTTCAGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* *
73976260 CCTTC-GGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
73976299 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* *
73976339 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* *
73976379 CCTTCGGGACTTAACCCGGATATAGTCACT-AGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCA-CACAAATG
73976419 CCTTCGG
1 CCTTCGG
73976426 ATCTTAGTCC
Statistics
Matches: 193, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
39 49 0.25
40 144 0.75
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:73978224 original size:56 final size:56
Alignment explanation
Indices: 73978164--73978286 Score: 210
Period size: 56 Copynumber: 2.2 Consensus size: 56
73978154 GCCTTGCTCA
* * *
73978164 CACACATATATCGAAGTCACATAGCGATGCCAACGTATTAAACGTAGTTTTACTCG
1 CACACATATATCGAACTCACATAGCGATGCCAACATATTAAACGTAGTCTTACTCG
*
73978220 CACACATATATCGAACTCACATATCGATGCCAACATATTAAACGTAGTCTTACTCG
1 CACACATATATCGAACTCACATAGCGATGCCAACATATTAAACGTAGTCTTACTCG
73978276 CACACATATAT
1 CACACATATAT
73978287 TGATGCCATG
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (56 bp):
CACACATATATCGAACTCACATAGCGATGCCAACATATTAAACGTAGTCTTACTCG
Found at i:73979851 original size:17 final size:17
Alignment explanation
Indices: 73979829--73979863 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
73979819 TCCATAGAAA
73979829 TCCCTAAGTTATATTAT
1 TCCCTAAGTTATATTAT
73979846 TCCCTAAGTTATATTAT
1 TCCCTAAGTTATATTAT
73979863 T
1 T
73979864 ATCTCTCTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.17, G:0.06, T:0.49
Consensus pattern (17 bp):
TCCCTAAGTTATATTAT
Found at i:73980267 original size:18 final size:18
Alignment explanation
Indices: 73980241--73980275 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73980231 TCGTAACATT
*
73980241 GTGTTGTTTGGAAAACAA
1 GTGTCGTTTGGAAAACAA
*
73980259 GTGTCGTTTTGAAAACA
1 GTGTCGTTTGGAAAACA
73980276 TGTCCTAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (18 bp):
GTGTCGTTTGGAAAACAA
Found at i:73980923 original size:50 final size:52
Alignment explanation
Indices: 73980887--73980991 Score: 153
Period size: 52 Copynumber: 2.1 Consensus size: 52
73980877 GCCTAGCCTC
*
73980887 TTTT-AAT-AACTGGGGCAAAAGCCCTTTT-GGTAAACTGGGGCATAAGCCA
1 TTTTCAATAAACTAGGGCAAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCA
* * *
73980936 TTTTCAATAAATTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCC
1 TTTTCAATAAACTAGGGCAAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCA
73980988 TTTT
1 TTTT
73980992 GCACTTCCTC
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
49 4 0.08
50 3 0.06
51 18 0.37
52 24 0.49
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (52 bp):
TTTTCAATAAACTAGGGCAAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCA
Found at i:73980953 original size:26 final size:26
Alignment explanation
Indices: 73980881--73980991 Score: 102
Period size: 26 Copynumber: 4.3 Consensus size: 26
73980871 CTGGAGGCCT
* *
73980881 AGCCTCTTTT-AAT-AACTGGGGCAAA
1 AGCC-CTTTTCAATAAACTAGGGCATA
** *
73980906 AGCCCTTTT-GGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTAGGGCATA
* *
73980931 AGCCATTTTCAATAAATTAGGGCATA
1 AGCCCTTTTCAATAAACTAGGGCATA
** *
73980957 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTAGGGCATA
73980983 AGCCCTTTT
1 AGCCCTTTT
73980992 GCACTTCCTC
Statistics
Matches: 71, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
24 6 0.08
25 23 0.32
26 42 0.59
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTAGGGCATA
Found at i:73981070 original size:20 final size:20
Alignment explanation
Indices: 73981045--73981097 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
73981035 TGAATACATT
73981045 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
* * * *
73981065 ATGTGCATTTTATACCTGTC
1 ATGTGCATATCATACATATC
73981085 ATGTGCATATCAT
1 ATGTGCATATCAT
73981098 CTCAACCATT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (20 bp):
ATGTGCATATCATACATATC
Found at i:73986306 original size:40 final size:40
Alignment explanation
Indices: 73986233--73986438 Score: 324
Period size: 40 Copynumber: 5.2 Consensus size: 40
73986223 AACCAAAGTA
* **
73986233 CCTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73986272 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73986312 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73986352 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
73986392 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73986432 CCTTCGG
1 CCTTCGG
73986439 ATCTTAGTCC
Statistics
Matches: 156, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 13 0.08
40 143 0.92
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73992099 original size:25 final size:25
Alignment explanation
Indices: 73992071--73992163 Score: 105
Period size: 26 Copynumber: 3.6 Consensus size: 25
73992061 CTCTTTTAAT
*
73992071 AACTGGGGCAAAAGCCCTTTCGGTA
1 AACTGGGGCATAAGCCCTTTCGGTA
**
73992096 AACTGGGGCATAAGCCCTTCTCAATA
1 AACTGGGGCATAAGCCCTT-TCGGTA
* * *
73992122 AACTAGAGCATAAGCCATTTTCGGTA
1 AACTGGGGCATAAGCC-CTTTCGGTA
*
73992148 AACCGGGGCATAAGCC
1 AACTGGGGCATAAGCC
73992164 TTTTTGCACT
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
25 18 0.33
26 35 0.64
27 2 0.04
ACGTcount: A:0.31, C:0.25, G:0.24, T:0.20
Consensus pattern (25 bp):
AACTGGGGCATAAGCCCTTTCGGTA
Found at i:73992244 original size:20 final size:20
Alignment explanation
Indices: 73992219--73992275 Score: 114
Period size: 20 Copynumber: 2.9 Consensus size: 20
73992209 TTATGCATAC
73992219 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
73992239 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
73992259 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
73992276 TAACCATGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:73992250 original size:11 final size:11
Alignment explanation
Indices: 73992219--73992274 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
73992209 TTATGCATAC
73992219 ATCATGTGCAT
1 ATCATGTGCAT
*
73992230 ATCA--TACAT
1 ATCATGTGCAT
73992239 ATCATGTGCAT
1 ATCATGTGCAT
*
73992250 ATCA--TACAT
1 ATCATGTGCAT
73992259 ATCATGTGCAT
1 ATCATGTGCAT
73992270 ATCAT
1 ATCAT
73992275 ATAACCATGT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:73998274 original size:46 final size:46
Alignment explanation
Indices: 73998207--73998381 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
73998197 TGTAACCCGC
*
73998207 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
73998253 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
73998303 -C-T-CGCGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
73998346 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
73998382 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 62 0.58
47 26 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:73998328 original size:93 final size:93
Alignment explanation
Indices: 73998215--73998386 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
73998205 GCCCATAAGT
** * *
73998215 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73998280 CGAGCTCGGATGCCTAGTTACATCTCGC
66 CGAGCTCGGATGCCTAGTTACATCTCGC
* *
73998308 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
73998373 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
73998387 CAAATATCTA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCGC
Found at i:73999553 original size:28 final size:28
Alignment explanation
Indices: 73999517--73999570 Score: 92
Period size: 27 Copynumber: 1.9 Consensus size: 28
73999507 AGCACTTTAT
73999517 GCATAAAATTTCTTCACGAATTTTTCACA
1 GCATAAAATTTCTTC-CGAATTTTTCACA
73999546 GCAT-AAATTTCTTCCGAATTTTTCA
1 GCATAAAATTTCTTCCGAATTTTTCA
73999571 ACAAATGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 11 0.44
28 10 0.40
29 4 0.16
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.41
Consensus pattern (28 bp):
GCATAAAATTTCTTCCGAATTTTTCACA
Found at i:74000173 original size:29 final size:30
Alignment explanation
Indices: 74000111--74000171 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
74000101 ATTTTCGAGC
74000111 TTTA-GGGAAAAAGTGTAAATATGCAAAAG
1 TTTAGGGGAAAAAGTGTAAATATGCAAAAG
* * *
74000140 TTTAGGGGAAAAATTGTAATTTTGCAAAAG
1 TTTAGGGGAAAAAGTGTAAATATGCAAAAG
74000170 TT
1 TT
74000172 AGAGTTAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 4 0.14
30 24 0.86
ACGTcount: A:0.43, C:0.03, G:0.23, T:0.31
Consensus pattern (30 bp):
TTTAGGGGAAAAAGTGTAAATATGCAAAAG
Found at i:74024963 original size:133 final size:133
Alignment explanation
Indices: 74024725--74024994 Score: 540
Period size: 133 Copynumber: 2.0 Consensus size: 133
74024715 ATTCAATCCA
74024725 TCTACAAATCATTTGCACATGATTTCTTCAGTGGAAACATATTCTCAAGCATACTTGCTTAACCG
1 TCTACAAATCATTTGCACATGATTTCTTCAGTGGAAACATATTCTCAAGCATACTTGCTTAACCG
74024790 TACAAATTCTTTTTCATATTCAGTGACTGTCATCCGACCTTGTTTTAACTCCAGAAACTCTTTAT
66 TACAAATTCTTTTTCATATTCAGTGACTGTCATCCGACCTTGTTTTAACTCCAGAAACTCTTTAT
74024855 GCT
131 GCT
74024858 TCTACAAATCATTTGCACATGATTTCTTCAGTGGAAACATATTCTCAAGCATACTTGCTTAACCG
1 TCTACAAATCATTTGCACATGATTTCTTCAGTGGAAACATATTCTCAAGCATACTTGCTTAACCG
74024923 TACAAATTCTTTTTCATATTCAGTGACTGTCATCCGACCTTGTTTTAACTCCAGAAACTCTTTAT
66 TACAAATTCTTTTTCATATTCAGTGACTGTCATCCGACCTTGTTTTAACTCCAGAAACTCTTTAT
74024988 GCT
131 GCT
74024991 TCTA
1 TCTA
74024995 ATTAAGAAAT
Statistics
Matches: 137, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
133 137 1.00
ACGTcount: A:0.28, C:0.23, G:0.11, T:0.38
Consensus pattern (133 bp):
TCTACAAATCATTTGCACATGATTTCTTCAGTGGAAACATATTCTCAAGCATACTTGCTTAACCG
TACAAATTCTTTTTCATATTCAGTGACTGTCATCCGACCTTGTTTTAACTCCAGAAACTCTTTAT
GCT
Found at i:74030981 original size:27 final size:27
Alignment explanation
Indices: 74030922--74030995 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
74030912 ACCCTGGTTT
* * * * *
74030922 GTAAAATCACCGAAATACCCTTGTAGT
1 GTAAAATGACCGTAATGCCCCTGTAGG
*
74030949 GCAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
74030976 GTAAAATGACC-TAATAGCCC
1 GTAAAATGACCGTAAT-GCCC
74030996 TATATGGTAG
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 4 0.10
27 35 0.90
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (27 bp):
GTAAAATGACCGTAATGCCCCTGTAGG
Found at i:74031004 original size:26 final size:27
Alignment explanation
Indices: 74030951--74031011 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
74030941 CTTGTAGTGC
*
74030951 AAAATGACCGTAATGCCCCTGTAGGGT
1 AAAATGACCGTAATGCCCCTATAGGGT
*
74030978 AAAATGACC-TAATAG-CCCTATATGGT
1 AAAATGACCGTAAT-GCCCCTATAGGGT
*
74031004 AGAATGAC
1 AAAATGAC
74031012 GATTATGCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 20 0.67
27 10 0.33
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
AAAATGACCGTAATGCCCCTATAGGGT
Found at i:74031280 original size:22 final size:22
Alignment explanation
Indices: 74031245--74031300 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
74031235 CTGTGATCTT
* * *
74031245 TACGGCCTTTAGTCATTCTGTC
1 TACGGCGTTGAGTCATCCTGTC
* *
74031267 TACGGTGTTGAGTCGTCCTGTC
1 TACGGCGTTGAGTCATCCTGTC
74031289 TACGGCGTTGAG
1 TACGGCGTTGAG
74031301 CCGTCTTATT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.12, C:0.23, G:0.29, T:0.36
Consensus pattern (22 bp):
TACGGCGTTGAGTCATCCTGTC
Found at i:74031305 original size:22 final size:22
Alignment explanation
Indices: 74031262--74031305 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
74031252 TTTAGTCATT
* *
74031262 CTGTCTACGGTGTTGAGTCGTC
1 CTGTCTACGGCGTTGAGCCGTC
74031284 CTGTCTACGGCGTTGAGCCGTC
1 CTGTCTACGGCGTTGAGCCGTC
74031306 TTATTGACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.27, G:0.32, T:0.32
Consensus pattern (22 bp):
CTGTCTACGGCGTTGAGCCGTC
Found at i:74033318 original size:16 final size:15
Alignment explanation
Indices: 74033294--74033323 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
74033284 AACGGTTTTT
74033294 TTACAAATTTCACTC
1 TTACAAATTTCACTC
74033309 TTACATAATTTCACT
1 TTACA-AATTTCACT
74033324 TTCTCCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:74033471 original size:51 final size:50
Alignment explanation
Indices: 74033388--74033611 Score: 170
Period size: 51 Copynumber: 4.5 Consensus size: 50
74033378 AATTTTCACT
* *
74033388 CACATA-TA-CCTGCATTTAGTTCCACATC-TGTGACCAAAACCATCTCTTA
1 CACATAGTAGCCTGCACTTAGTACCACA-CATGTGACCAAAACCATCT-TTA
* * * * * **
74033437 CACATAGTGGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCAGGTA
1 CACATAGTAGCCTGCACTTAGTACCACACATGTGACCAAAACCATC-TTTA
* * * * * *
74033488 CGCATAGTAGCCTGCACTTTGTACTACACATGCGACC-TAACCACCTTGTA
1 CACATAGTAGCCTGCACTTAGTACCACACATGTGACCAAAACCATCTT-TA
* * * *
74033538 CACGTAATAGCCTGCACTTAGTACTACACACGTGACCTAAAACCAT-TTTAA
1 CACATAGTAGCCTGCACTTAGTACCACACATGTGACC-AAAACCATCTTT-A
* *
74033589 AACATAGTAGCCTGCACATAGTA
1 CACATAGTAGCCTGCACTTAGTA
74033612 TTACACGTGT
Statistics
Matches: 134, Mismatches: 33, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
49 6 0.04
50 40 0.30
51 83 0.62
52 5 0.04
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (50 bp):
CACATAGTAGCCTGCACTTAGTACCACACATGTGACCAAAACCATCTTTA
Found at i:74042709 original size:18 final size:20
Alignment explanation
Indices: 74042672--74042709 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
74042662 AAAAGCAACT
*
74042672 TGGATGGCTCTATTAACATA
1 TGGATGGCTCTATAAACATA
74042692 TGGAT-GCTC-ATAAACATA
1 TGGATGGCTCTATAAACATA
74042710 AAATGGAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.47
19 4 0.24
20 5 0.29
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (20 bp):
TGGATGGCTCTATAAACATA
Found at i:74043709 original size:19 final size:20
Alignment explanation
Indices: 74043675--74043716 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
74043665 TTTCCTACCC
*
74043675 ATCCATCCACTACACACCAT
1 ATCCAACCACTACACACCAT
74043695 ATCCAACCA-TACACACCAT
1 ATCCAACCACTACACACCAT
74043714 ATC
1 ATC
74043717 AGAAGGAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.38, C:0.43, G:0.00, T:0.19
Consensus pattern (20 bp):
ATCCAACCACTACACACCAT
Found at i:74050459 original size:27 final size:27
Alignment explanation
Indices: 74050429--74050759 Score: 393
Period size: 27 Copynumber: 12.3 Consensus size: 27
74050419 AAAGTAGATG
*
74050429 AAATGACTGTAATGCCCCTGTAGGATA
1 AAATGACTGTAATGCCCCTGTAGGGTA
*
74050456 AAATGA-TCGTAATGCCCCTATAGGGTA
1 AAATGACT-GTAATGCCCCTGTAGGGTA
** * *
74050483 AAATGACCATAATACCCCTGTAGGATA
1 AAATGACTGTAATGCCCCTGTAGGGTA
74050510 AAATGACTGTAATGCCCCTGTAGGGTA
1 AAATGACTGTAATGCCCCTGTAGGGTA
*
74050537 AAATGA-TCGTAATGCCCCTGTAAGGTA
1 AAATGACT-GTAATGCCCCTGTAGGGTA
* *
74050564 AAATGACCGTAATGCCCCTGTAGGATA
1 AAATGACTGTAATGCCCCTGTAGGGTA
* * *
74050591 AAATGACCGTAATGCCCCTATAAGGTA
1 AAATGACTGTAATGCCCCTGTAGGGTA
** *
74050618 AAATGACCATAATGCACCTGTAGGGTA
1 AAATGACTGTAATGCCCCTGTAGGGTA
* *
74050645 AATTGA-TCATAATGCCCCTGTAGGGTA
1 AAATGACT-GTAATGCCCCTGTAGGGTA
*
74050672 AAATGA-TCATAATGCCCCTGTAGGGTA
1 AAATGACT-GTAATGCCCCTGTAGGGTA
*
74050699 AAATGACTGTAATGCCCCTGTAAGGTA
1 AAATGACTGTAATGCCCCTGTAGGGTA
* *
74050726 AAATGA-TCGTAATACCCCTGTATGGTA
1 AAATGACT-GTAATGCCCCTGTAGGGTA
74050753 AAATGAC
1 AAATGAC
74050760 GATTATGCCC
Statistics
Matches: 266, Mismatches: 30, Indels: 15
0.86 0.10 0.05
Matches are distributed among these distances:
26 3 0.01
27 262 0.98
28 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
AAATGACTGTAATGCCCCTGTAGGGTA
Found at i:74050511 original size:54 final size:54
Alignment explanation
Indices: 74050429--74050759 Score: 443
Period size: 54 Copynumber: 6.1 Consensus size: 54
74050419 AAAGTAGATG
* *
74050429 AAATGACTGTAATGCCCCTGT-AGGATAAAATGATCGTAATGCCCCTATAGGGTA
1 AAATGACCGTAATGCCCCTGTAAGG-TAAAATGATCGTAATGCCCCTGTAGGGTA
* *
74050483 AAATGACCATAATACCCCTGT-AGGATAAAATGA-CTGTAATGCCCCTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAAGG-TAAAATGATC-GTAATGCCCCTGTAGGGTA
* * *
74050537 AAATGATCGTAATGCCCCTGTAAGGTAAAATGACCGTAATGCCCCTGTAGGATA
1 AAATGACCGTAATGCCCCTGTAAGGTAAAATGATCGTAATGCCCCTGTAGGGTA
* * * *
74050591 AAATGACCGTAATGCCCCTATAAGGTAAAATGACCATAATGCACCTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAAGGTAAAATGATCGTAATGCCCCTGTAGGGTA
* * * * *
74050645 AATTGATCATAATGCCCCTGTAGGGTAAAATGATCATAATGCCCCTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAAGGTAAAATGATCGTAATGCCCCTGTAGGGTA
* * *
74050699 AAATGACTGTAATGCCCCTGTAAGGTAAAATGATCGTAATACCCCTGTATGGTA
1 AAATGACCGTAATGCCCCTGTAAGGTAAAATGATCGTAATGCCCCTGTAGGGTA
74050753 AAATGAC
1 AAATGAC
74050760 GATTATGCCC
Statistics
Matches: 246, Mismatches: 28, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
53 1 0.00
54 241 0.98
55 4 0.02
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.25
Consensus pattern (54 bp):
AAATGACCGTAATGCCCCTGTAAGGTAAAATGATCGTAATGCCCCTGTAGGGTA
Found at i:74050564 original size:81 final size:81
Alignment explanation
Indices: 74050429--74050759 Score: 443
Period size: 81 Copynumber: 4.1 Consensus size: 81
74050419 AAAGTAGATG
* * *
74050429 AAATGACTGTAATGCCCCTGTAGGATAAAATGATCGTAATGCCCCTATAGGGTAAAATGACCATA
1 AAATGACTGTAATGCCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAAGGTAAAATGACCATA
74050494 ATACCCCTGTAGGATA
66 ATACCCCTGTAGGATA
*
74050510 AAATGACTGTAATGCCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAAGGTAAAATGACCGTA
1 AAATGACTGTAATGCCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAAGGTAAAATGACCATA
*
74050575 ATGCCCCTGTAGGATA
66 ATACCCCTGTAGGATA
* * * * * * * * *
74050591 AAATGACCGTAATGCCCCTATAAGGTAAAATGACCATAATGCACCTGTAGGGTAAATTGATCATA
1 AAATGACTGTAATGCCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAAGGTAAAATGACCATA
* *
74050656 ATGCCCCTGTAGGGTA
66 ATACCCCTGTAGGATA
* * *
74050672 AAATGA-TCATAATGCCCCTGTAGGGTAAAATGA-CTGTAATGCCCCTGTAAGGTAAAATGATCG
1 AAATGACT-GTAATGCCCCTGTAGGGTAAAATGATC-GTAATGCCCCTGTAAGGTAAAATGACCA
74050735 TAATACCCCTGTATGG-TA
64 TAATACCCCTGTA-GGATA
74050753 AAATGAC
1 AAATGAC
74050760 GATTATGCCC
Statistics
Matches: 220, Mismatches: 26, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
80 1 0.00
81 217 0.99
82 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.25
Consensus pattern (81 bp):
AAATGACTGTAATGCCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAAGGTAAAATGACCATA
ATACCCCTGTAGGATA
Found at i:74050944 original size:27 final size:26
Alignment explanation
Indices: 74050914--74050980 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 26
74050904 GTGACTATGT
74050914 CACATTCACTGTTACTGGTGGATATT-C
1 CACATT-ACTGTTACTGGTGGAT-TTGC
* *
74050941 CACAATTACTGATACTGGTGGCTTTGC
1 CAC-ATTACTGTTACTGGTGGATTTGC
74050968 CACATTTACTGTT
1 CACA-TTACTGTT
74050981 TCAGGCATCT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
26 3 0.09
27 28 0.82
28 3 0.09
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.37
Consensus pattern (26 bp):
CACATTACTGTTACTGGTGGATTTGC
Found at i:74053092 original size:95 final size:95
Alignment explanation
Indices: 74052929--74053121 Score: 377
Period size: 95 Copynumber: 2.0 Consensus size: 95
74052919 TTTAATAAAA
*
74052929 TTTCTGATCCTTTATATAATTTCTATTTAGGTCCTGAAGCCATTTCTCAATTAAAACTCAATAGC
1 TTTCTGATCCTTTATATAATTTCTATTTAGGTCCTCAAGCCATTTCTCAATTAAAACTCAATAGC
74052994 GATTGGACTTTTACAATTTAGGCCTAAGTT
66 GATTGGACTTTTACAATTTAGGCCTAAGTT
74053024 TTTCTGATCCTTTATATAATTTCTATTTAGGTCCTCAAGCCATTTCTCAATTAAAACTCAATAGC
1 TTTCTGATCCTTTATATAATTTCTATTTAGGTCCTCAAGCCATTTCTCAATTAAAACTCAATAGC
74053089 GATTGGACTTTTACAATTTAGGCCTAAGTT
66 GATTGGACTTTTACAATTTAGGCCTAAGTT
74053119 TTT
1 TTT
74053122 ATTAACTATT
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 97 1.00
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (95 bp):
TTTCTGATCCTTTATATAATTTCTATTTAGGTCCTCAAGCCATTTCTCAATTAAAACTCAATAGC
GATTGGACTTTTACAATTTAGGCCTAAGTT
Found at i:74054291 original size:51 final size:51
Alignment explanation
Indices: 74054232--74054333 Score: 177
Period size: 51 Copynumber: 2.0 Consensus size: 51
74054222 CAAAAATATA
74054232 GCATAATAAGGCAAATAAACCATCCCAATCATAAACCATTCAGCATGCATC
1 GCATAATAAGGCAAATAAACCATCCCAATCATAAACCATTCAGCATGCATC
* * *
74054283 GCATAATAAGGTAAATAATCCATCCCAATCATAAAGCATTCAGCATGCATC
1 GCATAATAAGGCAAATAAACCATCCCAATCATAAACCATTCAGCATGCATC
74054334 CTGTACCCTA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.42, C:0.25, G:0.11, T:0.22
Consensus pattern (51 bp):
GCATAATAAGGCAAATAAACCATCCCAATCATAAACCATTCAGCATGCATC
Found at i:74061736 original size:27 final size:27
Alignment explanation
Indices: 74061704--74061853 Score: 196
Period size: 27 Copynumber: 5.6 Consensus size: 27
74061694 TTAGTTTACC
*
74061704 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
74061731 AAATTACT-AAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* * *
74061758 AAATTACTTAAATATCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
74061785 AAATTACTGAAATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTGTA
*
74061812 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
74061839 AAATTACTGAAATAC
1 AAATTACTGAAATAC
74061854 TCCTATAAGA
Statistics
Matches: 107, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
26 4 0.04
27 99 0.93
28 4 0.04
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:74061895 original size:27 final size:27
Alignment explanation
Indices: 74061865--74061953 Score: 142
Period size: 27 Copynumber: 3.3 Consensus size: 27
74061855 CCTATAAGAT
74061865 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
74061892 AGAATTATCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
74061919 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
74061946 AAAATTAC
1 AGAATTAC
74061954 TGAAATACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.38
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:74061898 original size:54 final size:53
Alignment explanation
Indices: 74061824--74061964 Score: 151
Period size: 54 Copynumber: 2.6 Consensus size: 53
74061814 ATTACTGAAA
* **
74061824 TACCCTCAATTTGTAAAATTACTGAAATACTCCT-ATAAGATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGAAATAC-CCTCAT-AGATAGAATTACCATTT
* *** **
74061878 TACCCTCGATTTACAGAATTA-TCGTTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACT-GAAATACCCTC-ATAGATAGAATTACCATTT
74061932 TACCCTCGATTTACAAAATTACTGAAATACCCT
1 TACCCTCGATTTACAAAATTACTGAAATACCCT
74061965 TGGTTTACAA
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
53 4 0.06
54 63 0.90
55 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (53 bp):
TACCCTCGATTTACAAAATTACTGAAATACCCTCATAGATAGAATTACCATTT
Found at i:74061979 original size:54 final size:54
Alignment explanation
Indices: 74061867--74061982 Score: 144
Period size: 54 Copynumber: 2.1 Consensus size: 54
74061857 TATAAGATAG
* *** * *
74061867 AATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAAAATTATCGAAATACCCTCGATTTACAA
* *
74061921 AATTACCATTTTACCCTCGATTTACAAAATTA-CTGAAATACCCTTGGTTTACAA
1 AATTACCATTTTACCCTCGATTTACAAAATTATC-GAAATACCCTCGATTTACAA
74061975 AATTACCA
1 AATTACCA
74061983 AAATATCATC
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.02
54 52 0.98
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (54 bp):
AATTACCATTTTACCCTCGATTTACAAAATTATCGAAATACCCTCGATTTACAA
Found at i:74061986 original size:27 final size:26
Alignment explanation
Indices: 74061704--74062072 Score: 123
Period size: 27 Copynumber: 13.7 Consensus size: 26
74061694 TTAGTTTACC
* * * *
74061704 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTAC-CAAATACCCTTGATTTATA
* **
74061731 AAATTACTAAAGTACCCCCGATTTATA
1 AAATTACCAAA-TACCCTTGATTTATA
* * *
74061758 AAATTACTTAAATATCCTTGATTTGTA
1 AAATTAC-CAAATACCCTTGATTTATA
* * **
74061785 AAATTACTGAAATACCC-TCAGTTTGCA
1 AAATTAC-CAAATACCCTTGA-TTTATA
* ** *
74061812 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTAC-CAAATACCCTTGATTTATA
* **
74061839 AAATTACTGAAATACTCC-T-ATAAGATA
1 AAATTAC-CAAATAC-CCTTGAT-TTATA
* ** * *
74061866 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCA-AATACCCTTGATTTATA
* **** *
74061893 GAATTATCGTTTTACCCTCGATTTATA
1 AAATTA-CCAAATACCCTTGATTTATA
* ** * *
74061920 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCA-AATACCCTTGATTTATA
* * *
74061947 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTAC-CAAATACCCTTGATTTATA
* * * **
74061974 AAATTACCAAAATATCATCGATCAATA
1 AAATTACC-AAATACCCTTGATTTATA
* * *
74062001 AAATTACCAAATACCCCTGGTTTGTA
1 AAATTACCAAATACCCTTGATTTATA
* * *
74062027 AAATTACCAAATACCCCTGATTTGTG
1 AAATTACCAAATACCCTTGATTTATA
74062053 AAATTACCACAATACCCTTG
1 AAATTACCA-AATACCCTTG
74062073 TAGGGTAGAA
Statistics
Matches: 270, Mismatches: 58, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
26 54 0.20
27 205 0.76
28 11 0.04
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (26 bp):
AAATTACCAAATACCCTTGATTTATA
Found at i:74062070 original size:26 final size:26
Alignment explanation
Indices: 74061999--74062069 Score: 115
Period size: 26 Copynumber: 2.7 Consensus size: 26
74061989 CATCGATCAA
*
74061999 TAAAATTACCAAATACCCCTGGTTTG
1 TAAAATTACCAAATACCCCTGATTTG
74062025 TAAAATTACCAAATACCCCTGATTTG
1 TAAAATTACCAAATACCCCTGATTTG
*
74062051 TGAAATTACCACAATACCC
1 TAAAATTACCA-AATACCC
74062070 TTGTAGGGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
26 35 0.83
27 7 0.17
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.28
Consensus pattern (26 bp):
TAAAATTACCAAATACCCCTGATTTG
Found at i:74062084 original size:27 final size:26
Alignment explanation
Indices: 74062054--74062276 Score: 261
Period size: 27 Copynumber: 8.3 Consensus size: 26
74062044 TGATTTGTGA
74062054 AATTACCACAATACCCTTGTAGGGTAG
1 AATTACCA-AATACCCTTGTAGGGTAG
*
74062081 AATTACTGAAATA-CCTCTGTAGGGTAG
1 AATTAC-CAAATACCCT-TGTAGGGTAG
*
74062108 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTA-CCAAATACCCTTGTAGGGTAG
*
74062135 AATTACCGAAATACCTTTGTAGGGTAG
1 AATTACC-AAATACCCTTGTAGGGTAG
* *
74062162 AATTACTAAAATACCCCTGTAGGGT-G
1 AATTAC-CAAATACCCTTGTAGGGTAG
*
74062188 AATTACCGAAATACCCTTTTAGGGTAG
1 AATTACC-AAATACCCTTGTAGGGTAG
* *
74062215 AAATACCGAAATACCCTTGTAGGGTAA
1 AATTACC-AAATACCCTTGTAGGGTAG
* *
74062242 AATTACCGAGATACCCTTGTAGGGTAA
1 AATTACC-AAATACCCTTGTAGGGTAG
74062269 AATTACCA
1 AATTACCA
74062277 TTTTGCCCCT
Statistics
Matches: 174, Mismatches: 14, Indels: 17
0.85 0.07 0.08
Matches are distributed among these distances:
26 27 0.16
27 142 0.82
28 5 0.03
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (26 bp):
AATTACCAAATACCCTTGTAGGGTAG
Found at i:74062121 original size:54 final size:53
Alignment explanation
Indices: 74062054--74062274 Score: 293
Period size: 54 Copynumber: 4.1 Consensus size: 53
74062044 TGATTTGTGA
* *
74062054 AATTACCACAATACCCTTGTAGGGTAGAATTACTGAAATA-CCTCTGTAGGGTAG
1 AATTACGA-AATACCCTTGTAGGGTAGAATTACCGAAATACCCT-TGTAGGGTAG
*
74062108 AATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCTTTGTAGGGTAG
1 AATTA-CGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
* * *
74062162 AATTACTAAAATACCCCTGTAGGGT-GAATTACCGAAATACCCTTTTAGGGTAG
1 AATTAC-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
* * * *
74062215 AAATACCGAAATACCCTTGTAGGGTAAAATTACCGAGATACCCTTGTAGGGTAA
1 AATTA-CGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
74062269 AATTAC
1 AATTAC
74062275 CATTTTGCCC
Statistics
Matches: 147, Mismatches: 15, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
53 48 0.33
54 95 0.65
55 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (53 bp):
AATTACGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
Found at i:74062286 original size:107 final size:108
Alignment explanation
Indices: 74062053--74062276 Score: 326
Period size: 107 Copynumber: 2.1 Consensus size: 108
74062043 CTGATTTGTG
* * * * *
74062053 AAATTACCACAATACCCTTGTAGGGTAGAATTACTGAAATACCTCTGTAGGGTAGAATTATCGAA
1 AAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAAATACCGAA
* *
74062118 ATACCCTTGTAGGGTAGAATTACCGAAATACCTTTGTAGGGTA
66 ATACCCTTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTA
* * *
74062161 GAATTACTAAAATACCCCTGTAGGGT-GAATTACCGAAATACC-CTTTTAGGGTAGAAATACCGA
1 AAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCTC-TGTAGGGTAGAAATACCGA
*
74062224 AATACCCTTGTAGGGTAAAATTACCGAGATACCCTTGTAGGGTA
65 AATACCCTTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTA
74062268 AAATTACCA
1 AAATTACCA
74062277 TTTTGCCCCT
Statistics
Matches: 102, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
106 1 0.01
107 79 0.77
108 22 0.22
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (108 bp):
AAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAAATACCGAA
ATACCCTTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTA
Found at i:74062701 original size:31 final size:31
Alignment explanation
Indices: 74062666--74062744 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
74062656 TTGAATTCAC
* *
74062666 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTA
* *
74062697 ATTCTGATTTTGATTCTGTCACTTGATTCTA
1 ATTCTGATTTTGATTCTGTCACCTGATACTA
*
74062728 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
74062745 AGTTCTGATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTGATACTA
Found at i:74062705 original size:6 final size:6
Alignment explanation
Indices: 74062666--74062753 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
74062656 TTGAATTCAC
* * *
74062666 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
74062715 -TCACTTG ATTCTA ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
74062754 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 51 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:74064723 original size:27 final size:27
Alignment explanation
Indices: 74064691--74064839 Score: 196
Period size: 27 Copynumber: 5.6 Consensus size: 27
74064681 TTAGTTTACC
*
74064691 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
74064718 AAATTACT-AAAGTACCC-CGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* * *
74064744 AAATTACTTAAATATCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
74064771 AAATTACTGAAATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTGTA
*
74064798 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
74064825 AAATTACTGAAATAC
1 AAATTACTGAAATAC
74064840 TCCTATAAGA
Statistics
Matches: 107, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
26 23 0.21
27 83 0.78
28 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:74064881 original size:27 final size:27
Alignment explanation
Indices: 74064851--74064939 Score: 142
Period size: 27 Copynumber: 3.3 Consensus size: 27
74064841 CCTATAAGAT
74064851 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
74064878 AGAATTATCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
74064905 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
74064932 AAAATTAC
1 AGAATTAC
74064940 TGAAATACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.38
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:74064884 original size:54 final size:53
Alignment explanation
Indices: 74064810--74064950 Score: 151
Period size: 54 Copynumber: 2.6 Consensus size: 53
74064800 ATTACTGAAA
* **
74064810 TACCCTCAATTTGTAAAATTACTGAAATACTCCT-ATAAGATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGAAATAC-CCTCAT-AGATAGAATTACCATTT
* *** **
74064864 TACCCTCGATTTACAGAATTA-TCGTTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACT-GAAATACCCTC-ATAGATAGAATTACCATTT
74064918 TACCCTCGATTTACAAAATTACTGAAATACCCT
1 TACCCTCGATTTACAAAATTACTGAAATACCCT
74064951 TGGTTTACAA
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
53 4 0.06
54 63 0.90
55 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (53 bp):
TACCCTCGATTTACAAAATTACTGAAATACCCTCATAGATAGAATTACCATTT
Found at i:74064965 original size:54 final size:54
Alignment explanation
Indices: 74064853--74064968 Score: 144
Period size: 54 Copynumber: 2.1 Consensus size: 54
74064843 TATAAGATAG
* *** * *
74064853 AATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAAAATTATCGAAATACCCTCGATTTACAA
* *
74064907 AATTACCATTTTACCCTCGATTTACAAAATTA-CTGAAATACCCTTGGTTTACAA
1 AATTACCATTTTACCCTCGATTTACAAAATTATC-GAAATACCCTCGATTTACAA
74064961 AATTACCA
1 AATTACCA
74064969 AATATCATCG
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.02
54 52 0.98
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (54 bp):
AATTACCATTTTACCCTCGATTTACAAAATTATCGAAATACCCTCGATTTACAA
Found at i:74065015 original size:26 final size:27
Alignment explanation
Indices: 74064986--74065053 Score: 97
Period size: 25 Copynumber: 2.6 Consensus size: 27
74064976 TCGATCAATA
*
74064986 AAATTACCAAAATACCCCTGGTTTGT-
1 AAATTACCAAAATACCCCTGATTTGTG
74065012 AAATTACC-AAATA-CCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTG
*
74065037 AAATTACCACAATACCC
1 AAATTACCAAAATACCC
74065054 TTGTAGGGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
24 10 0.27
25 13 0.35
26 12 0.32
27 2 0.05
ACGTcount: A:0.38, C:0.25, G:0.09, T:0.28
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTG
Found at i:74065040 original size:25 final size:24
Alignment explanation
Indices: 74064986--74065054 Score: 93
Period size: 26 Copynumber: 2.7 Consensus size: 24
74064976 TCGATCAATA
*
74064986 AAATTACCAAAATACCCCTGGTTTGT
1 AAATTACC-AAATA-CCCTGATTTGT
74065012 AAATTACCAAATACCCTGATTTGT
1 AAATTACCAAATACCCTGATTTGT
74065036 GAAATTACCACAATACCCT
1 -AAATTACCA-AATACCCT
74065055 TGTAGGGTAG
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
24 10 0.25
25 14 0.35
26 16 0.40
ACGTcount: A:0.38, C:0.25, G:0.09, T:0.29
Consensus pattern (24 bp):
AAATTACCAAATACCCTGATTTGT
Found at i:74065077 original size:27 final size:27
Alignment explanation
Indices: 74065038--74065258 Score: 306
Period size: 27 Copynumber: 8.3 Consensus size: 27
74065028 TGATTTGTGA
74065038 AATTACC-ACAATACCCTTGTAGGGTAG
1 AATTACCGA-AATACCCTTGTAGGGTAG
*
74065065 AATTACTGAAATA-CCTCTGTAGGGTAG
1 AATTACCGAAATACCCT-TGTAGGGTAG
*
74065092 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
74065119 AATTACCGAAATACCTTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
**
74065146 AATTACTAAAATACCC-TGTAGGGT-G
1 AATTACCGAAATACCCTTGTAGGGTAG
*
74065171 AATTACCGAAATACCCTTTTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
74065198 AAATACCGAAATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
74065225 AATTACCGAGATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
74065252 AATTACC
1 AATTACC
74065259 ATTTTGCCCC
Statistics
Matches: 173, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
25 15 0.09
26 18 0.10
27 136 0.79
28 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:74065182 original size:106 final size:108
Alignment explanation
Indices: 74065037--74065259 Score: 326
Period size: 106 Copynumber: 2.1 Consensus size: 108
74065027 CTGATTTGTG
* * * *
74065037 AAATTACCACAATACCCTTGTAGGGTAGAATTACTGAAATA-CCTCTGTAGGGTAGAATTATCGA
1 AAATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCT-TGTAGGGTAGAAATACCGA
* *
74065101 AATACCCTTGTAGGGTAGAATTACCGAAATACCTTTGTAGGGTA
65 AATACCCTTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTA
* * *
74065145 GAATTACTAAAATACCC-TGTAGGGT-GAATTACCGAAATACCCTTTTAGGGTAGAAATACCGAA
1 AAATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAA
*
74065208 ATACCCTTGTAGGGTAAAATTACCGAGATACCCTTGTAGGGTA
66 ATACCCTTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTA
74065251 AAATTACCA
1 AAATTACCA
74065260 TTTTGCCCCT
Statistics
Matches: 102, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
106 77 0.75
107 11 0.11
108 14 0.14
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (108 bp):
AAATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAA
ATACCCTTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTA
Found at i:74065684 original size:31 final size:31
Alignment explanation
Indices: 74065649--74065727 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
74065639 TTGAATTCAC
* *
74065649 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTA
* *
74065680 ATTCTGATTTTGATTCTGTCACTTGATTCTA
1 ATTCTGATTTTGATTCTGTCACCTGATACTA
*
74065711 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
74065728 AGTTCTGATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTGATACTA
Found at i:74065688 original size:6 final size:6
Alignment explanation
Indices: 74065649--74065736 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
74065639 TTGAATTCAC
* * *
74065649 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
74065698 -TCACTTG ATTCTA ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
74065737 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 51 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:74067716 original size:27 final size:27
Alignment explanation
Indices: 74067684--74067833 Score: 196
Period size: 27 Copynumber: 5.6 Consensus size: 27
74067674 TTAGTTTACC
*
74067684 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
74067711 AAATTACT-AAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* * *
74067738 AAATTACTTAAATATCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
74067765 AAATTACTGAAATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTGTA
*
74067792 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
74067819 AAATTACTGAAATAC
1 AAATTACTGAAATAC
74067834 TCCTATAAGA
Statistics
Matches: 107, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
26 4 0.04
27 99 0.93
28 4 0.04
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:74067875 original size:27 final size:27
Alignment explanation
Indices: 74067845--74067933 Score: 142
Period size: 27 Copynumber: 3.3 Consensus size: 27
74067835 CCTATAAGAT
74067845 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
74067872 AGAATTATCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
74067899 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
74067926 AAAATTAC
1 AGAATTAC
74067934 TGAAATACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.38
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Done.