Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 217 of 373
Found at i:74067878 original size:54 final size:53
Alignment explanation
Indices: 74067804--74067944 Score: 151
Period size: 54 Copynumber: 2.6 Consensus size: 53
74067794 ATTACTGAAA
* **
74067804 TACCCTCAATTTGTAAAATTACTGAAATACTCCT-ATAAGATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGAAATAC-CCTCAT-AGATAGAATTACCATTT
* *** **
74067858 TACCCTCGATTTACAGAATTA-TCGTTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACT-GAAATACCCTC-ATAGATAGAATTACCATTT
74067912 TACCCTCGATTTACAAAATTACTGAAATACCCT
1 TACCCTCGATTTACAAAATTACTGAAATACCCT
74067945 TGGTTTACAA
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
53 4 0.06
54 63 0.90
55 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (53 bp):
TACCCTCGATTTACAAAATTACTGAAATACCCTCATAGATAGAATTACCATTT
Found at i:74067966 original size:27 final size:27
Alignment explanation
Indices: 74067684--74068054 Score: 136
Period size: 27 Copynumber: 13.7 Consensus size: 27
74067674 TTAGTTTACC
** * * *
74067684 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGATTTATA
* * **
74067711 AAATTACTAAAGTACCCCCGATTTATA
1 AAATTACCAAAATACCCTTGATTTATA
** * *
74067738 AAATTACTTAAATATCCTTGATTTGTA
1 AAATTACCAAAATACCCTTGATTTATA
** * **
74067765 AAATTACTGAAATACCC-TCAGTTTGCA
1 AAATTACCAAAATACCCTTGA-TTTATA
** ** *
74067792 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTTGATTTATA
** **
74067819 AAATTACTGAAATACTCC-T-ATAAGATA
1 AAATTACCAAAATAC-CCTTGAT-TTATA
* *** * *
74067846 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTTGATTTATA
* * **** *
74067873 GAATTATCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTTGATTTATA
* *** * *
74067900 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTTGATTTATA
** * *
74067927 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGATTTATA
* * * **
74067954 AAATTACCAAAATATCATCGATCAATA
1 AAATTACCAAAATACCCTTGATTTATA
* * *
74067981 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTATA
* * *
74068008 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTTGATTTATA
*
74068035 AAATTACCACAATACCCTTG
1 AAATTACCAAAATACCCTTG
74068055 TAGGGTAGAA
Statistics
Matches: 271, Mismatches: 67, Indels: 12
0.77 0.19 0.03
Matches are distributed among these distances:
26 6 0.02
27 260 0.96
28 5 0.02
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGATTTATA
Found at i:74068066 original size:27 final size:26
Alignment explanation
Indices: 74068036--74068258 Score: 261
Period size: 27 Copynumber: 8.3 Consensus size: 26
74068026 TGATTTGTGA
74068036 AATTACCACAATACCCTTGTAGGGTAG
1 AATTACCA-AATACCCTTGTAGGGTAG
*
74068063 AATTACTGAAATA-CCTCTGTAGGGTAG
1 AATTAC-CAAATACCCT-TGTAGGGTAG
*
74068090 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTA-CCAAATACCCTTGTAGGGTAG
*
74068117 AATTACCGAAATACCTTTGTAGGGTAG
1 AATTACC-AAATACCCTTGTAGGGTAG
* *
74068144 AATTACTAAAATACCCCTGTAGGGT-G
1 AATTAC-CAAATACCCTTGTAGGGTAG
*
74068170 AATTACCGAAATACCCTTTTAGGGTAG
1 AATTACC-AAATACCCTTGTAGGGTAG
* *
74068197 AAATACCGAAATACCCTTGTAGGGTAA
1 AATTACC-AAATACCCTTGTAGGGTAG
* *
74068224 AATTACCGAGATACCCTTGTAGGGTAA
1 AATTACC-AAATACCCTTGTAGGGTAG
74068251 AATTACCA
1 AATTACCA
74068259 TTTTGCCCCT
Statistics
Matches: 174, Mismatches: 14, Indels: 17
0.85 0.07 0.08
Matches are distributed among these distances:
26 27 0.16
27 142 0.82
28 5 0.03
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (26 bp):
AATTACCAAATACCCTTGTAGGGTAG
Found at i:74068067 original size:81 final size:82
Alignment explanation
Indices: 74067982--74068258 Score: 273
Period size: 81 Copynumber: 3.4 Consensus size: 82
74067972 CGATCAATAA
* ** **
74067982 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTG-ATTTGT-GAAATTACC-
1 AATTACTAAAATACCCCTGGTAGGGTAAAATTACCAAAATACCCCTGTA-GGGTAG-AATTACCG
74068043 ACAATACCCTTGTAGGGTAG
64 A-AATACCCTTGTAGGGTAG
* * * * * *
74068063 AATTACTGAAATACCTCT-GTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAA
1 AATTACTAAAATACCCCTGGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
*
74068127 ATACCTTTGTAGGGTAG
66 ATACCCTTGTAGGGTAG
* * * * *
74068144 AATTACTAAAATACCCCT-GTAGGGT-GAATTACCGAAATACCCTTTTAGGGTAGAAATACCGAA
1 AATTACTAAAATACCCCTGGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
*
74068207 ATACCCTTGTAGGGTAA
66 ATACCCTTGTAGGGTAG
** * *
74068224 AATTACCGAGATA-CCCTTGTAGGGTAAAATTACCA
1 AATTACTAAAATACCCCTGGTAGGGTAAAATTACCA
74068259 TTTTGCCCCT
Statistics
Matches: 166, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
79 4 0.02
80 69 0.42
81 90 0.54
82 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (82 bp):
AATTACTAAAATACCCCTGGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
ATACCCTTGTAGGGTAG
Found at i:74068228 original size:134 final size:135
Alignment explanation
Indices: 74068009--74068257 Score: 353
Period size: 134 Copynumber: 1.9 Consensus size: 135
74067999 TGGTTTGTAA
** * *
74068009 AATTACCAAAATACCCCTGATTTGTGAAATTACCACAATACCCTTGTAGGGTAGAATTACTGAAA
1 AATTACCAAAATACCCCTGATGGGTGAAATTACCACAATACCCTTGTAGGGTAGAAATACCGAAA
* * *
74068074 TACCTCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCTTTGTAG
66 TACCTCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAAAATTACCGAAATACCTTTGTAG
74068139 GGTAG
131 GGTAG
* *
74068144 AATTACTAAAATACCCCTG-TAGGGTG-AATTACCGA-AATACCCTTTTAGGGTAGAAATACCGA
1 AATTACCAAAATACCCCTGAT-GGGTGAAATTACC-ACAATACCCTTGTAGGGTAGAAATACCGA
*
74068206 AATACC-CTTGTAGGGTAAAATTACCGAGATACCCTTGTAGGGTAAAATTACC
64 AATACCTC-TGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAAAATTACC
74068258 ATTTTGCCCC
Statistics
Matches: 101, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
133 1 0.01
134 78 0.77
135 22 0.22
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (135 bp):
AATTACCAAAATACCCCTGATGGGTGAAATTACCACAATACCCTTGTAGGGTAGAAATACCGAAA
TACCTCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAAAATTACCGAAATACCTTTGTAG
GGTAG
Found at i:74068268 original size:107 final size:108
Alignment explanation
Indices: 74068035--74068258 Score: 326
Period size: 107 Copynumber: 2.1 Consensus size: 108
74068025 CTGATTTGTG
* * * * *
74068035 AAATTACCACAATACCCTTGTAGGGTAGAATTACTGAAATACCTCTGTAGGGTAGAATTATCGAA
1 AAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAAATACCGAA
* *
74068100 ATACCCTTGTAGGGTAGAATTACCGAAATACCTTTGTAGGGTA
66 ATACCCTTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTA
* * *
74068143 GAATTACTAAAATACCCCTGTAGGGT-GAATTACCGAAATACC-CTTTTAGGGTAGAAATACCGA
1 AAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCTC-TGTAGGGTAGAAATACCGA
*
74068206 AATACCCTTGTAGGGTAAAATTACCGAGATACCCTTGTAGGGTA
65 AATACCCTTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTA
74068250 AAATTACCA
1 AAATTACCA
74068259 TTTTGCCCCT
Statistics
Matches: 102, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
106 1 0.01
107 79 0.77
108 22 0.22
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (108 bp):
AAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAAATACCGAA
ATACCCTTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTA
Found at i:74068683 original size:31 final size:31
Alignment explanation
Indices: 74068648--74068726 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
74068638 TTGAATTCAC
* *
74068648 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTA
* *
74068679 ATTCTGATTTTGATTCTGTCACTTGATTCTA
1 ATTCTGATTTTGATTCTGTCACCTGATACTA
*
74068710 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
74068727 AGTTCTGATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTGATACTA
Found at i:74068687 original size:6 final size:6
Alignment explanation
Indices: 74068648--74068735 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
74068638 TTGAATTCAC
* * *
74068648 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
74068697 -TCACTTG ATTCTA ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
74068736 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 51 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:74070715 original size:27 final size:27
Alignment explanation
Indices: 74070683--74070832 Score: 196
Period size: 27 Copynumber: 5.6 Consensus size: 27
74070673 TTAGTTTACC
*
74070683 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
74070710 AAATTACT-AAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* * *
74070737 AAATTACTTAAATATCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
74070764 AAATTACTGAAATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTGTA
*
74070791 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
74070818 AAATTACTGAAATAC
1 AAATTACTGAAATAC
74070833 TCCTATAAGA
Statistics
Matches: 107, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
26 4 0.04
27 99 0.93
28 4 0.04
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:74070874 original size:27 final size:27
Alignment explanation
Indices: 74070844--74070932 Score: 142
Period size: 27 Copynumber: 3.3 Consensus size: 27
74070834 CCTATAAGAT
74070844 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
74070871 AGAATTATCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
74070898 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
74070925 AAAATTAC
1 AGAATTAC
74070933 TGAAATACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.38
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:74070877 original size:54 final size:53
Alignment explanation
Indices: 74070803--74070943 Score: 151
Period size: 54 Copynumber: 2.6 Consensus size: 53
74070793 ATTACTGAAA
* **
74070803 TACCCTCAATTTGTAAAATTACTGAAATACTCCT-ATAAGATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGAAATAC-CCTCAT-AGATAGAATTACCATTT
* *** **
74070857 TACCCTCGATTTACAGAATTA-TCGTTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACT-GAAATACCCTC-ATAGATAGAATTACCATTT
74070911 TACCCTCGATTTACAAAATTACTGAAATACCCT
1 TACCCTCGATTTACAAAATTACTGAAATACCCT
74070944 TGGTTTACAA
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
53 4 0.06
54 63 0.90
55 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (53 bp):
TACCCTCGATTTACAAAATTACTGAAATACCCTCATAGATAGAATTACCATTT
Found at i:74070965 original size:27 final size:27
Alignment explanation
Indices: 74070683--74071053 Score: 136
Period size: 27 Copynumber: 13.7 Consensus size: 27
74070673 TTAGTTTACC
** * * *
74070683 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGATTTATA
* * **
74070710 AAATTACTAAAGTACCCCCGATTTATA
1 AAATTACCAAAATACCCTTGATTTATA
** * *
74070737 AAATTACTTAAATATCCTTGATTTGTA
1 AAATTACCAAAATACCCTTGATTTATA
** * **
74070764 AAATTACTGAAATACCC-TCAGTTTGCA
1 AAATTACCAAAATACCCTTGA-TTTATA
** ** *
74070791 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTTGATTTATA
** **
74070818 AAATTACTGAAATACTCC-T-ATAAGATA
1 AAATTACCAAAATAC-CCTTGAT-TTATA
* *** * *
74070845 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTTGATTTATA
* * **** *
74070872 GAATTATCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTTGATTTATA
* *** * *
74070899 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTTGATTTATA
** * *
74070926 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGATTTATA
* * * **
74070953 AAATTACCAAAATATCATCGATCAATA
1 AAATTACCAAAATACCCTTGATTTATA
* * *
74070980 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTATA
* * *
74071007 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTTGATTTATA
*
74071034 AAATTACCACAATACCCTTG
1 AAATTACCAAAATACCCTTG
74071054 TAGGGTAGAA
Statistics
Matches: 271, Mismatches: 67, Indels: 12
0.77 0.19 0.03
Matches are distributed among these distances:
26 6 0.02
27 260 0.96
28 5 0.02
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGATTTATA
Found at i:74071065 original size:27 final size:26
Alignment explanation
Indices: 74071035--74071257 Score: 261
Period size: 27 Copynumber: 8.3 Consensus size: 26
74071025 TGATTTGTGA
74071035 AATTACCACAATACCCTTGTAGGGTAG
1 AATTACCA-AATACCCTTGTAGGGTAG
*
74071062 AATTACTGAAATA-CCTCTGTAGGGTAG
1 AATTAC-CAAATACCCT-TGTAGGGTAG
*
74071089 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTA-CCAAATACCCTTGTAGGGTAG
*
74071116 AATTACCGAAATACCTTTGTAGGGTAG
1 AATTACC-AAATACCCTTGTAGGGTAG
* *
74071143 AATTACTAAAATACCCCTGTAGGGT-G
1 AATTAC-CAAATACCCTTGTAGGGTAG
*
74071169 AATTACCGAAATACCCTTTTAGGGTAG
1 AATTACC-AAATACCCTTGTAGGGTAG
* *
74071196 AAATACCGAAATACCCTTGTAGGGTAA
1 AATTACC-AAATACCCTTGTAGGGTAG
* *
74071223 AATTACCGAGATACCCTTGTAGGGTAA
1 AATTACC-AAATACCCTTGTAGGGTAG
74071250 AATTACCA
1 AATTACCA
74071258 TTTTGCCCCT
Statistics
Matches: 174, Mismatches: 14, Indels: 17
0.85 0.07 0.08
Matches are distributed among these distances:
26 27 0.16
27 142 0.82
28 5 0.03
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (26 bp):
AATTACCAAATACCCTTGTAGGGTAG
Found at i:74071066 original size:81 final size:82
Alignment explanation
Indices: 74070981--74071257 Score: 273
Period size: 81 Copynumber: 3.4 Consensus size: 82
74070971 CGATCAATAA
* ** **
74070981 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTG-ATTTGT-GAAATTACC-
1 AATTACTAAAATACCCCTGGTAGGGTAAAATTACCAAAATACCCCTGTA-GGGTAG-AATTACCG
74071042 ACAATACCCTTGTAGGGTAG
64 A-AATACCCTTGTAGGGTAG
* * * * * *
74071062 AATTACTGAAATACCTCT-GTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAA
1 AATTACTAAAATACCCCTGGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
*
74071126 ATACCTTTGTAGGGTAG
66 ATACCCTTGTAGGGTAG
* * * * *
74071143 AATTACTAAAATACCCCT-GTAGGGT-GAATTACCGAAATACCCTTTTAGGGTAGAAATACCGAA
1 AATTACTAAAATACCCCTGGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
*
74071206 ATACCCTTGTAGGGTAA
66 ATACCCTTGTAGGGTAG
** * *
74071223 AATTACCGAGATA-CCCTTGTAGGGTAAAATTACCA
1 AATTACTAAAATACCCCTGGTAGGGTAAAATTACCA
74071258 TTTTGCCCCT
Statistics
Matches: 166, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
79 4 0.02
80 69 0.42
81 90 0.54
82 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (82 bp):
AATTACTAAAATACCCCTGGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
ATACCCTTGTAGGGTAG
Found at i:74071227 original size:134 final size:135
Alignment explanation
Indices: 74071008--74071256 Score: 353
Period size: 134 Copynumber: 1.9 Consensus size: 135
74070998 TGGTTTGTAA
** * *
74071008 AATTACCAAAATACCCCTGATTTGTGAAATTACCACAATACCCTTGTAGGGTAGAATTACTGAAA
1 AATTACCAAAATACCCCTGATGGGTGAAATTACCACAATACCCTTGTAGGGTAGAAATACCGAAA
* * *
74071073 TACCTCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCTTTGTAG
66 TACCTCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAAAATTACCGAAATACCTTTGTAG
74071138 GGTAG
131 GGTAG
* *
74071143 AATTACTAAAATACCCCTG-TAGGGTG-AATTACCGA-AATACCCTTTTAGGGTAGAAATACCGA
1 AATTACCAAAATACCCCTGAT-GGGTGAAATTACC-ACAATACCCTTGTAGGGTAGAAATACCGA
*
74071205 AATACC-CTTGTAGGGTAAAATTACCGAGATACCCTTGTAGGGTAAAATTACC
64 AATACCTC-TGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAAAATTACC
74071257 ATTTTGCCCC
Statistics
Matches: 101, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
133 1 0.01
134 78 0.77
135 22 0.22
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (135 bp):
AATTACCAAAATACCCCTGATGGGTGAAATTACCACAATACCCTTGTAGGGTAGAAATACCGAAA
TACCTCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAAAATTACCGAAATACCTTTGTAG
GGTAG
Found at i:74071267 original size:107 final size:108
Alignment explanation
Indices: 74071034--74071257 Score: 326
Period size: 107 Copynumber: 2.1 Consensus size: 108
74071024 CTGATTTGTG
* * * * *
74071034 AAATTACCACAATACCCTTGTAGGGTAGAATTACTGAAATACCTCTGTAGGGTAGAATTATCGAA
1 AAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAAATACCGAA
* *
74071099 ATACCCTTGTAGGGTAGAATTACCGAAATACCTTTGTAGGGTA
66 ATACCCTTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTA
* * *
74071142 GAATTACTAAAATACCCCTGTAGGGT-GAATTACCGAAATACC-CTTTTAGGGTAGAAATACCGA
1 AAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCTC-TGTAGGGTAGAAATACCGA
*
74071205 AATACCCTTGTAGGGTAAAATTACCGAGATACCCTTGTAGGGTA
65 AATACCCTTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTA
74071249 AAATTACCA
1 AAATTACCA
74071258 TTTTGCCCCT
Statistics
Matches: 102, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
106 1 0.01
107 79 0.77
108 22 0.22
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (108 bp):
AAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAAATACCGAA
ATACCCTTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTA
Found at i:74071682 original size:31 final size:31
Alignment explanation
Indices: 74071647--74071725 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
74071637 TTGAATTCAC
* *
74071647 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTA
* *
74071678 ATTCTGATTTTGATTCTGTCACTTGATTCTA
1 ATTCTGATTTTGATTCTGTCACCTGATACTA
*
74071709 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
74071726 AGTTCTGATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTGATACTA
Found at i:74071686 original size:6 final size:6
Alignment explanation
Indices: 74071647--74071734 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
74071637 TTGAATTCAC
* * *
74071647 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
74071696 -TCACTTG ATTCTA ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
74071735 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 51 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:74073723 original size:27 final size:27
Alignment explanation
Indices: 74073681--74074048 Score: 211
Period size: 27 Copynumber: 13.7 Consensus size: 27
74073671 TTAGTTTACT
* * *
74073681 AAATTACTGATATACCCTCGACTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
74073708 AAATTACC-AAAGTACCCCCGATTTATA
1 AAATTACCGAAA-TACCCTCGATTTGTA
* *
74073735 AAATTACCTAAATATCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
74073762 AAATTACCGAAATACCCTC-AGTTTGTA
1 AAATTACCGAAATACCCTCGA-TTTGTA
*
74073789 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
74073816 AAATTACTGAAATA--CTC-ATGTAAGATA
1 AAATTACCGAAATACCCTCGAT-T-TG-TA
* ** **
74073843 GAATTACC-ATTTTACCCTCGATTTACA
1 AAATTACCGA-AATACCCTCGATTTGTA
* * ** *
74073870 GAATTA-CTATTTTACCCTCGATTTATA
1 AAATTACCGA-AATACCCTCGATTTGTA
* ** **
74073897 GAATTA-C-ATTTTACCCTCGATTTACA
1 AAATTACCGA-AATACCCTCGATTTGTA
* * * **
74073923 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTACCGAAATACCCTCGATTTGTA
* ***
74073950 AAATTACCAAAATACCCTCGATCAATA
1 AAATTACCGAAATACCCTCGATTTGTA
*
74073977 AAATTACC-AAAGTACCC-CTGGTTTGTA
1 AAATTACCGAAA-TACCCTC-GATTTGTA
** *
74074004 AAATTACTAAAATACCC-CTGATTTGTG
1 AAATTACCGAAATACCCTC-GATTTGTA
74074031 AAATTACCGAAATACCCT
1 AAATTACCGAAATACCCT
74074049 TGTAGGGTAG
Statistics
Matches: 280, Mismatches: 43, Indels: 35
0.78 0.12 0.10
Matches are distributed among these distances:
24 2 0.01
25 4 0.01
26 33 0.12
27 227 0.81
28 8 0.03
29 4 0.01
30 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:74073939 original size:53 final size:55
Alignment explanation
Indices: 74073801--74073940 Score: 157
Period size: 53 Copynumber: 2.6 Consensus size: 55
74073791 ATTACTGAAA
**
74073801 TACCCTCGATTTGTAAAATTACTGAAATA--CTCATGTAAGATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCATGT-AGATAGAATTACCATTT
* ** *
74073855 TACCCTCGATTTACAGAATTACT-ATTTTACCCTCGAT-T-TATAGAATTA-CATTT
1 TACCCTCGATTTACAAAATTACTGA-AATACCCTC-ATGTAGATAGAATTACCATTT
74073908 TACCCTCGATTTACAAAATTACTGAAATACCCT
1 TACCCTCGATTTACAAAATTACTGAAATACCCT
74073941 TGGTTTACAA
Statistics
Matches: 72, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
53 34 0.47
54 32 0.44
56 4 0.06
57 2 0.03
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (55 bp):
TACCCTCGATTTACAAAATTACTGAAATACCCTCATGTAGATAGAATTACCATTT
Found at i:74073955 original size:53 final size:53
Alignment explanation
Indices: 74073801--74073956 Score: 138
Period size: 53 Copynumber: 2.9 Consensus size: 53
74073791 ATTACTGAAA
** * * * *
74073801 TACCCTCGATTTGTAAAATTACTGAAATACTCAT-G-TAAGATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACA-A-AATTA-CATTT
* ** * * * *
74073855 TACCCTCGATTTACAGAATTACT-ATTTTACCCTCGATTTATAGAATTACATTT
1 TACCCTCGATTTACAAAATTACTGA-AATACCCTTGGTTTACAAAATTACATTT
74073908 TACCCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTAC
74073957 CAAAATACCC
Statistics
Matches: 79, Mismatches: 19, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
53 46 0.58
54 30 0.38
56 3 0.04
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.37
Consensus pattern (53 bp):
TACCCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACATTT
Found at i:74074069 original size:27 final size:27
Alignment explanation
Indices: 74074032--74074251 Score: 259
Period size: 27 Copynumber: 8.2 Consensus size: 27
74074022 TGATTTGTGA
*
74074032 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * *
74074059 AATAATTGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
74074086 AATTATCAAAATACCC-TGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
74074112 AATTA-CTGAAATACCCTTGTAGGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
74074139 AATTA-CTGAAATTA-CCTTGTAGGGTAG
1 AATTATC-GAAA-TACCCTTGTAGGGTAG
* * *
74074166 AATTACCAAAATACCCTTATAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * *
74074193 AAATATCGAAATACCCCTATAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * *
74074220 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTATCGAAATACCCTTGTAGGGTAG
74074247 AATTA
1 AATTA
74074252 CCATTTTACC
Statistics
Matches: 168, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
25 1 0.01
26 25 0.15
27 139 0.83
28 3 0.02
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.28
Consensus pattern (27 bp):
AATTATCGAAATACCCTTGTAGGGTAG
Found at i:74074116 original size:134 final size:134
Alignment explanation
Indices: 74073975--74074254 Score: 302
Period size: 134 Copynumber: 2.1 Consensus size: 134
74073965 CCTCGATCAA
** **
74073975 TAAAATTACCAAAGTACCCCTGGT-TTGTAAAATTACT-AAAATACCCCTG-ATTTGT-GAAATT
1 TAAAATTACCAAA-TA-CCCTGGTAGGGTAAAATTACTGAAAATA-CCCTGTA-GGGTAG-AATT
* * * *
74074036 ACCGAAATACCCTTGTAGGGTAG-AATAATTGAAATACCCCTGTAGGGTAGAATTATCAAAATAC
61 ACCAAAATACCCTTATAGGGTAGAAAT-ATCGAAATACCCCTATAGGGTAGAATTATCAAAATAC
74074100 CC-TGTAGGG
125 CCTTGTAGGG
* * * * * *
74074109 TAGAATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATTACCTTGTAGGGTAGAATTACCA
1 TAAAATTAC-CAAATACCCTGGTAGGGTAAAATTACTGAAAATACCCTGTAGGGTAGAATTACCA
* *
74074174 AAATACCCTTATAGGGTAGAAATATCGAAATACCCCTATAGGGTAGAATTATCGAGATACCCTTG
65 AAATACCCTTATAGGGTAGAAATATCGAAATACCCCTATAGGGTAGAATTATCAAAATACCCTTG
*
74074239 TGGGG
130 TAGGG
74074244 TAAAATTACCA
1 TAAAATTACCA
74074255 TTTTACCCTT
Statistics
Matches: 120, Mismatches: 19, Indels: 14
0.78 0.12 0.09
Matches are distributed among these distances:
133 6 0.05
134 87 0.73
135 27 0.22
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (134 bp):
TAAAATTACCAAATACCCTGGTAGGGTAAAATTACTGAAAATACCCTGTAGGGTAGAATTACCAA
AATACCCTTATAGGGTAGAAATATCGAAATACCCCTATAGGGTAGAATTATCAAAATACCCTTGT
AGGG
Found at i:74074129 original size:80 final size:81
Alignment explanation
Indices: 74074032--74074254 Score: 290
Period size: 80 Copynumber: 2.8 Consensus size: 81
74074022 TGATTTGTGA
* * * *
74074032 AATTACCGAAATACCCTTGTAGGGTAGAATAATTGAAATACCCCTGTAGGGTAGAATTATCAAAA
1 AATTACTGAAATACCCTTGTAGGGTAGAATTATTGAAATACCCTTGTAGGGTAGAATTACCAAAA
*
74074097 TACCC-TGTAGGGTAG
66 TACCCTTATAGGGTAG
*
74074112 AATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATTA-CCTTGTAGGGTAGAATTACCAAA
1 AATTACTGAAATACCCTTGTAGGGTAGAATTATTGAAA-TACCCTTGTAGGGTAGAATTACCAAA
74074176 ATACCCTTATAGGGTAG
65 ATACCCTTATAGGGTAG
* * * * * * *
74074193 AAATA-TCGAAATACCCCTATAGGGTAGAATTATCGAGATACCCTTGTGGGGTAAAATTACCA
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTATTGAAATACCCTTGTAGGGTAGAATTACCA
74074255 TTTTACCCTT
Statistics
Matches: 125, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
80 65 0.52
81 60 0.48
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.27
Consensus pattern (81 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTATTGAAATACCCTTGTAGGGTAGAATTACCAAAA
TACCCTTATAGGGTAG
Found at i:74074641 original size:6 final size:6
Alignment explanation
Indices: 74074610--74074691 Score: 71
Period size: 6 Copynumber: 13.3 Consensus size: 6
74074600 TTGCATTCAC
* *
74074610 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
74074659 -TCACTTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT-TC-TG ATTCTG ATTCTG ATTCTG A-TTCTG AT
74074692 AATGTTTCTT
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
5 4 0.06
6 49 0.79
7 7 0.11
8 2 0.03
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:74074689 original size:31 final size:31
Alignment explanation
Indices: 74074610--74074682 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
74074600 TTGCATTCAC
* *
74074610 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
* *
74074641 ATTCTGATTCTGATTCTGTCACTTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
74074672 ATTCTGATTCT
1 ATTCTGATTCT
74074683 AGTTCTGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:74082199 original size:42 final size:42
Alignment explanation
Indices: 74082140--74082303 Score: 170
Period size: 42 Copynumber: 3.9 Consensus size: 42
74082130 TTAGGGTTAC
*
74082140 TGAGACTAT-GTGTAAGACCATATCTGGGATATGGCATCAATA
1 TGAGACT-TCGTGTAAGACCATATCTGGGATATGGCATCGATA
* *
74082182 TGAGACTTCGTGGAAGACCATACCTGGGATATGGCATCGATA
1 TGAGACTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
* ** ** * *
74082224 TGAGATTTTTTGTAAGACCATAGATGGGCTATTGGCTTCGATA
1 TGAGACTTCGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* * *
74082267 CGAGA-TTACATGTAAGACCATATTTGGGATATGGCAT
1 TGAGACTT-CGTGTAAGACCATATCTGGGATATGGCAT
74082304 TGGTATGGTA
Statistics
Matches: 101, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.01
42 68 0.67
43 32 0.32
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (42 bp):
TGAGACTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:74088200 original size:40 final size:40
Alignment explanation
Indices: 74088151--74088253 Score: 125
Period size: 40 Copynumber: 2.6 Consensus size: 40
74088141 GAAAACAAAG
* * * * *
74088151 GCCATTATAGATCGAGCATTAGCAGTGCTTTTTGAAAAAT
1 GCCACTATAGATCGAGCATTAGCAGCGCTTTCTAAAAAAC
* *
74088191 GCCACTATAGAACGAGCATTAGAAGCGCTTTCTAAAAAAC
1 GCCACTATAGATCGAGCATTAGCAGCGCTTTCTAAAAAAC
**
74088231 GCCACTATAGATATAGCATTAGC
1 GCCACTATAGATCGAGCATTAGC
74088254 GACCCCGCTA
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (40 bp):
GCCACTATAGATCGAGCATTAGCAGCGCTTTCTAAAAAAC
Found at i:74088405 original size:40 final size:40
Alignment explanation
Indices: 74088350--74088496 Score: 161
Period size: 40 Copynumber: 3.7 Consensus size: 40
74088340 TTTAGTGGCG
* *
74088350 TTAGCGGCGCTTTTTGAAAAATGCTGCTATAGATCAAGGA
1 TTAGCGGCGCTTTTTGAAAAATGCCGCTATAGATCAAGAA
**
74088390 TTAGCGGCGCTTTTTGAAAAACACCGCTATAGAT-AGAGAA
1 TTAGCGGCGCTTTTTGAAAAATGCCGCTATAGATCA-AGAA
* * * * **
74088430 TTAGCGGTGCTTTTTAAAAAATGCCACTATAGGTCAACCA
1 TTAGCGGCGCTTTTTGAAAAATGCCGCTATAGATCAAGAA
** *
74088470 TTAGCGGCGCAATTTGAAAAACGCCGC
1 TTAGCGGCGCTTTTTGAAAAATGCCGC
74088497 AAAAAACGAG
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
39 1 0.01
40 85 0.98
41 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (40 bp):
TTAGCGGCGCTTTTTGAAAAATGCCGCTATAGATCAAGAA
Found at i:74088618 original size:128 final size:129
Alignment explanation
Indices: 74088398--74088630 Score: 283
Period size: 128 Copynumber: 1.8 Consensus size: 129
74088388 GATTAGCGGC
* * *
74088398 GCTTTTTGAAAAACACCGCTATAGATAGAGAATTAGCGGTGCTTTTTAAAAAATGCCACTATAGG
1 GCTTTTTGAAAAACACCGCTATAGATAGAGAATTAGCAGCGCTTTTTAAAAAACGCCACTATAGG
* *
74088463 TCAACCATTAGCGGCGCAATTTGAAAAA-CGCCGCAAAAAACGAGCTTTAGTGGCTTTAGCGAT
66 TCAACCATTAGCAGCGCAATTTCAAAAAGCGCCGCAAAAAACGAGCTTTAGTGGCTTTAGCGAT
* * * * * *
74088526 GCTTTTTGACAAACGA-CGCTGTAGATCGAGCATTAGCAGCGCTTTCTTGAAAAACGCCGCTATA
1 GCTTTTTGAAAAAC-ACCGCTATAGATAGAGAATTAGCAGCGCTTT-TTAAAAAACGCCACTATA
* * * **
74088590 GGTTAAGCATTAGCAGTG-TTTTTCAAAAAGCGCCGCAAAAA
64 GGTCAACCATTAGCAGCGCAATTTCAAAAAGCGCCGCAAAAA
74088631 GTATAATTTA
Statistics
Matches: 86, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
128 45 0.52
129 41 0.48
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (129 bp):
GCTTTTTGAAAAACACCGCTATAGATAGAGAATTAGCAGCGCTTTTTAAAAAACGCCACTATAGG
TCAACCATTAGCAGCGCAATTTCAAAAAGCGCCGCAAAAAACGAGCTTTAGTGGCTTTAGCGAT
Found at i:74088895 original size:7 final size:7
Alignment explanation
Indices: 74088874--74088983 Score: 55
Period size: 7 Copynumber: 15.4 Consensus size: 7
74088864 TTAATTATCA
*
74088874 TTATAGT
1 TTATGGT
*
74088881 TTAGGGT
1 TTATGGT
74088888 TTATGGT
1 TTATGGT
74088895 TTATGGT
1 TTATGGT
* *
74088902 ATATGAT
1 TTATGGT
*
74088909 TTAGGGT
1 TTATGGT
*
74088916 TTAAGGT
1 TTATGGT
*
74088923 TTAAGAGT
1 TTATG-GT
74088931 TACTAT--T
1 T--TATGGT
*
74088938 TTAAGGT
1 TTATGGT
**
74088945 TTATGAA
1 TTATGGT
74088952 TTATGGGT
1 TTAT-GGT
*
74088960 TTA-GAGA
1 TTATG-GT
74088967 TTATGGT
1 TTATGGT
74088974 TTATGGT
1 TTATGGT
74088981 TTA
1 TTA
74088984 ACAGTTGGTG
Statistics
Matches: 77, Mismatches: 18, Indels: 16
0.69 0.16 0.14
Matches are distributed among these distances:
5 2 0.03
6 1 0.01
7 64 0.83
8 8 0.10
10 2 0.03
ACGTcount: A:0.25, C:0.01, G:0.25, T:0.48
Consensus pattern (7 bp):
TTATGGT
Found at i:74088962 original size:22 final size:21
Alignment explanation
Indices: 74088888--74088984 Score: 61
Period size: 22 Copynumber: 4.5 Consensus size: 21
74088878 AGTTTAGGGT
* * *
74088888 TTATGGTTTATGGTATATGAT
1 TTATGGTTTAAGGTTTATGAA
* * *
74088909 TTAGGGTTTAAGGTTTAAGAG
1 TTATGGTTTAAGGTTTATGAA
**
74088930 TTACTATTTTAAGGTTTATGAA
1 TTA-TGGTTTAAGGTTTATGAA
* **
74088952 TTATGGGTTT-AGAGATTATGGT
1 TTAT-GGTTTAAG-GTTTATGAA
74088974 TTATGGTTTAA
1 TTATGGTTTAA
74088985 CAGTTGGTGT
Statistics
Matches: 57, Mismatches: 15, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
21 27 0.47
22 30 0.53
ACGTcount: A:0.27, C:0.01, G:0.25, T:0.47
Consensus pattern (21 bp):
TTATGGTTTAAGGTTTATGAA
Found at i:74088976 original size:14 final size:15
Alignment explanation
Indices: 74088942--74088978 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
74088932 ACTATTTTAA
74088942 GGTTTATGAATTATG
1 GGTTTATGAATTATG
74088957 GGTTTA-GAGATTAT-
1 GGTTTATGA-ATTATG
74088971 GGTTTATG
1 GGTTTATG
74088979 GTTTAACAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (15 bp):
GGTTTATGAATTATG
Found at i:74089112 original size:7 final size:7
Alignment explanation
Indices: 74088993--74089112 Score: 84
Period size: 7 Copynumber: 16.9 Consensus size: 7
74088983 AACAGTTGGT
*
74088993 GTTTAAG
1 GTTTAGG
74089000 GTTTAGG
1 GTTTAGG
74089007 AG-TTAGGG
1 -GTTTA-GG
*
74089015 GTTAAGG
1 GTTTAGG
*
74089022 GTTAAGG
1 GTTTAGG
*
74089029 GTTAAGG
1 GTTTAGG
*
74089036 GTTAAGG
1 GTTTAGG
74089043 G-TTAGAG
1 GTTTAG-G
*
74089050 GTTTATG
1 GTTTAGG
*
74089057 GTTTAGA
1 GTTTAGG
* *
74089064 GTCTAAG
1 GTTTAGG
*
74089071 GTTTA-T
1 GTTTAGG
74089077 GTTTAGG
1 GTTTAGG
74089084 GTTTAGAG
1 GTTTAG-G
74089092 GTTTAGAG
1 GTTTAG-G
74089100 GTTTAGG
1 GTTTAGG
74089107 GTTTAG
1 GTTTAG
74089113 ATTAATTAAT
Statistics
Matches: 94, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
6 8 0.09
7 63 0.67
8 23 0.24
ACGTcount: A:0.23, C:0.01, G:0.38, T:0.38
Consensus pattern (7 bp):
GTTTAGG
Found at i:74091184 original size:33 final size:31
Alignment explanation
Indices: 74091142--74091214 Score: 85
Period size: 33 Copynumber: 2.3 Consensus size: 31
74091132 ATATTTTAAA
*
74091142 ATATGTATAATTAAATAAAAAAT-AAAATTTCAT
1 ATATATATAATTAAAT--AAAATCAAAATTT-AT
*
74091175 ATATATATAATTAAATTAAATCAAAATTTAT
1 ATATATATAATTAAATAAAATCAAAATTTAT
74091206 ATATCATAT
1 ATAT-ATAT
74091215 TATTTTCATC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
31 10 0.28
32 11 0.31
33 15 0.42
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (31 bp):
ATATATATAATTAAATAAAATCAAAATTTAT
Found at i:74092481 original size:9 final size:9
Alignment explanation
Indices: 74092469--74092586 Score: 67
Period size: 9 Copynumber: 14.1 Consensus size: 9
74092459 TATATCATAT
74092469 CATAACTTA
1 CATAACTTA
74092478 CATAACTTA
1 CATAACTTA
* *
74092487 AAAAACTTA
1 CATAACTTA
74092496 CATAA--TA
1 CATAACTTA
*
74092503 CATAA-ATA
1 CATAACTTA
*
74092511 TAT-A-TT-
1 CATAACTTA
74092517 -ATAACTTA
1 CATAACTTA
74092525 CATAA--TA
1 CATAACTTA
*
74092532 CATAA-ATA
1 CATAACTTA
* * *
74092540 TATATCATA
1 CATAACTTA
74092549 TCATAACTTA
1 -CATAACTTA
74092559 CATAACTTA
1 CATAACTTA
*
74092568 CAAAACTTA
1 CATAACTTA
*
74092577 CTTAACTTA
1 CATAACTTA
74092586 C
1 C
74092587 GTAATACATA
Statistics
Matches: 87, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
5 2 0.02
6 1 0.01
7 18 0.21
8 9 0.10
9 51 0.59
10 6 0.07
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:74092481 original size:53 final size:47
Alignment explanation
Indices: 74092424--74092529 Score: 122
Period size: 53 Copynumber: 2.1 Consensus size: 47
74092414 AATTGAGCAC
* *
74092424 ACATAACTCACACAACTTACATAATAACTTATATATATATCATATCATAACTT
1 ACATAACTCAAAAAACTTACATAAT-AC--ATA-A-ATAT-ATATCATAACTT
* *
74092477 ACATAACTTAAAAAACTTACATAATACATAAATATATATTATAACTT
1 ACATAACTCAAAAAACTTACATAATACATAAATATATATCATAACTT
74092524 ACATAA
1 ACATAA
74092530 TACATAAATA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
47 17 0.35
48 4 0.08
49 1 0.02
50 3 0.06
52 2 0.04
53 22 0.45
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (47 bp):
ACATAACTCAAAAAACTTACATAATACATAAATATATATCATAACTT
Found at i:74097752 original size:43 final size:43
Alignment explanation
Indices: 74097638--74097752 Score: 160
Period size: 42 Copynumber: 2.7 Consensus size: 43
74097628 GGCGTTTGTA
*
74097638 AGAAAAGCGCCGCTAAAGGTAATGGTATTTAACGGTGTTATTG
1 AGAAAAGCGCCGCTAAAGGTAATGGTCTTTAACGGTGTTATTG
* * * *
74097681 AG-AAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGTGTTTTTG
1 AGAAAAGCGCCGCTAAAGGTAATGGTCTTTAACGGTGTTATTG
* *
74097723 AGAAAAGCGCCGTTAAATGTAATGGTCTTT
1 AGAAAAGCGCCGCTAAAGGTAATGGTCTTT
74097753 GGTGACATTT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 37 0.60
43 25 0.40
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (43 bp):
AGAAAAGCGCCGCTAAAGGTAATGGTCTTTAACGGTGTTATTG
Found at i:74097795 original size:43 final size:43
Alignment explanation
Indices: 74097678--74097799 Score: 122
Period size: 43 Copynumber: 2.9 Consensus size: 43
74097668 AACGGTGTTA
* ***
74097678 TTGA-GAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGTGTTT
1 TTGAGGAAAGCGCCGCTAAATGTCATGTTCTTTAGCGACATTT
* * * * * *
74097720 TTGAGAAAAGCGCCGTTAAATGTAATGGTCTTTGGTGACATTT
1 TTGAGGAAAGCGCCGCTAAATGTCATGTTCTTTAGCGACATTT
*
74097763 TTCG-GGAAAGCGCCGCTAAATGTCACGTTCTTTAGCG
1 TT-GAGGAAAGCGCCGCTAAATGTCATGTTCTTTAGCG
74097800 GCGTCTGTGA
Statistics
Matches: 61, Mismatches: 17, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
42 4 0.07
43 56 0.92
44 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
TTGAGGAAAGCGCCGCTAAATGTCATGTTCTTTAGCGACATTT
Found at i:74097816 original size:43 final size:43
Alignment explanation
Indices: 74097769--74097927 Score: 187
Period size: 43 Copynumber: 3.7 Consensus size: 43
74097759 ATTTTTCGGG
* * * *
74097769 AAAGCGCCGCTAAATGTCACGTTCTTTAGCGGCGTCTGTGAT-A
1 AAAGCGCCACTAAAGGTCACATTCTTTAGCGGCGTTTGTG-TGA
* * * *
74097812 AAAGCAG-CGCTAAAGGTCACGTTCTTTAGTGGCGTTTATGTGA
1 AAAGC-GCCACTAAAGGTCACATTCTTTAGCGGCGTTTGTGTGA
* *
74097855 AAAGCGGCACTAAAGGTCACATTCTTTAGAGGCGTTTGTGTGA
1 AAAGCGCCACTAAAGGTCACATTCTTTAGCGGCGTTTGTGTGA
*
74097898 AAAGTGCCACTAAAGGTCACATTCTTTAGC
1 AAAGCGCCACTAAAGGTCACATTCTTTAGC
74097928 AGCGCTTTTC
Statistics
Matches: 102, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
42 2 0.02
43 99 0.97
44 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (43 bp):
AAAGCGCCACTAAAGGTCACATTCTTTAGCGGCGTTTGTGTGA
Found at i:74098478 original size:43 final size:43
Alignment explanation
Indices: 74098382--74098648 Score: 261
Period size: 43 Copynumber: 6.2 Consensus size: 43
74098372 AGAAAACTCT
* * * * * *
74098382 GCTAAAGAACGT-GACTTTCAGCGGCGCTGTCTTGA-AAACACC
1 GCTAAAGAACGTGGCCTTT-AGCGGCACTTTTTTTACAAACGCC
*** *
74098424 GCTAAAGAACGTTATCTTTAGCGGCACTTTTTGTACAAACGCC
1 GCTAAAGAACGTGGCCTTTAGCGGCACTTTTTTTACAAACGCC
* *
74098467 GCTAAAAAACGTGGCCTTTAGCAGCACTTTTTTTACAAACGCC
1 GCTAAAGAACGTGGCCTTTAGCGGCACTTTTTTTACAAACGCC
* *
74098510 GCTAAAGAACGTGGCCTTTCGCGGCGCTTTTTTTTACAAACGCC
1 GCTAAAGAACGTGGCCTTTAGCGGCAC-TTTTTTTACAAACGCC
* * * *
74098554 ACTAAAGAAAGTGGCCTTTCA-CGACACTTTTTTTACAAACGCT
1 GCTAAAGAACGTGGCCTTT-AGCGGCACTTTTTTTACAAACGCC
* * * * * **
74098597 GCTAAAGAACATGACCTTTAGCAGCGCTTTTATCGCAAACGCC
1 GCTAAAGAACGTGGCCTTTAGCGGCACTTTTTTTACAAACGCC
74098640 GCTAAAGAA
1 GCTAAAGAA
74098649 TGTGACTCTA
Statistics
Matches: 185, Mismatches: 35, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
42 24 0.13
43 124 0.67
44 37 0.20
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (43 bp):
GCTAAAGAACGTGGCCTTTAGCGGCACTTTTTTTACAAACGCC
Found at i:74098568 original size:87 final size:87
Alignment explanation
Indices: 74098417--74098627 Score: 268
Period size: 87 Copynumber: 2.4 Consensus size: 87
74098407 GCTGTCTTGA
* * * * *
74098417 AAACACCGCTAAAGAACGTTATCTTTAGCGGCAC-TTTTTGTACAAACGCCGCTAAAAAACGTGG
1 AAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTTTTGTACAAACGCCACTAAAAAACGTGG
74098481 CCTTT-A-GCAGCACTTTTTTTAC
66 CCTTTCACG-A-CACTTTTTTTAC
* * *
74098503 AAACGCCGCTAAAGAACGTGGCCTTTCGCGGCGCTTTTTTTTACAAACGCCACTAAAGAAA-GTG
1 AAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTTTTGTACAAACGCCACTAAA-AAACGTG
74098567 GCCTTTCACGACACTTTTTTTAC
65 GCCTTTCACGACACTTTTTTTAC
* * *
74098590 AAACGCTGCTAAAGAACATGACCTTTAGCAGCGCTTTT
1 AAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTT
74098628 ATCGCAAACG
Statistics
Matches: 108, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
86 28 0.26
87 74 0.69
88 5 0.05
89 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (87 bp):
AAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTTTTGTACAAACGCCACTAAAAAACGTGG
CCTTTCACGACACTTTTTTTAC
Found at i:74098671 original size:130 final size:130
Alignment explanation
Indices: 74098448--74098689 Score: 315
Period size: 130 Copynumber: 1.9 Consensus size: 130
74098438 TCTTTAGCGG
* * * *
74098448 CACTTTTTGTACAAACGCCGCTAAAAAACGTGGCCTTTAGCAGCACTTTTTTTACAAACGCCGCT
1 CACTTTTTGTACAAACGCCGCTAAAAAACATGACCTTTAGCAGCACTTTTATCACAAACGCCGCT
* ** **
74098513 AAAGAACGTGGCCTTTCGCGGCGCTTTTTTTTACAAACGCCACTAAAGAAAGTGGCCTTTCACGA
66 AAAGAACGTGACCTTAAGCAACGCTTTTTTTTACAAACGCCACTAAAGAAAGTGGCCTTTCACGA
* * * * *
74098578 CACTTTTTTTACAAACGCTGCTAAAGAACATGACCTTTAGCAGCGCTTTTATCGCAAACGCCGCT
1 CACTTTTTGTACAAACGCCGCTAAAAAACATGACCTTTAGCAGCACTTTTATCACAAACGCCGCT
* * *
74098643 AAAGAATGTGA-CTCTAAGCAACGTTTTTTTTTGCAAACGCCACTAAA
66 AAAGAACGTGACCT-TAAGCAACGCTTTTTTTTACAAACGCCACTAAA
74098690 TATATGTTCT
Statistics
Matches: 94, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
129 2 0.02
130 92 0.98
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (130 bp):
CACTTTTTGTACAAACGCCGCTAAAAAACATGACCTTTAGCAGCACTTTTATCACAAACGCCGCT
AAAGAACGTGACCTTAAGCAACGCTTTTTTTTACAAACGCCACTAAAGAAAGTGGCCTTTCACGA
Found at i:74099615 original size:40 final size:40
Alignment explanation
Indices: 74099565--74099658 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
74099555 CGTTTGAATG
*
74099565 AAAAATGCCGCTAAACAAT-GAGCATTAGCGGCG-CTTTTCA
1 AAAAACGCCGCTAAA-AATCGAGCATTAGCGGCGCCTTTT-A
* * *
74099605 AAAAACGCCGCTAAAGATCGAGTATTAGCTGCGCCTTTTA
1 AAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCCTTTTA
74099645 AAAAACGCCGCTAA
1 AAAAACGCCGCTAA
74099659 TGCTCGATCT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
39 2 0.04
40 41 0.85
41 5 0.10
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.21
Consensus pattern (40 bp):
AAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCCTTTTA
Found at i:74099799 original size:75 final size:75
Alignment explanation
Indices: 74099667--74099850 Score: 253
Period size: 75 Copynumber: 2.5 Consensus size: 75
74099657 AATGCTCGAT
* *
74099667 CTTTAGTGGCGCTTTATTAAAAACACCGCAAAA-AATTTAACACAACGCCGTCGTTTTGTATTGA
1 CTTTAGTGGCGCTTT-TTAAAAACACCGCAAAAGAATTTAACAAAACGCCGTCATTTTGTATTGA
74099731 GCCTTTAGTGG
65 GCCTTTAGTGG
* * * ** *
74099742 CTTTAGCGGTGCTTTTTAAAAACGCCGCAAAAGAATTTTGCAAAACGTCGTCATTTTGTATTGAG
1 CTTTAGTGGCGCTTTTTAAAAACACCGCAAAAGAATTTAACAAAACGCCGTCATTTTGTATTGAG
*
74099807 CTTTTAGTGG
66 CCTTTAGTGG
* *
74099817 CTTTAATGGCGCTTTTTAAAAACACCGCTAAAGA
1 CTTTAGTGGCGCTTTTTAAAAACACCGCAAAAGA
74099851 TCGAGTATTA
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
74 16 0.17
75 78 0.83
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (75 bp):
CTTTAGTGGCGCTTTTTAAAAACACCGCAAAAGAATTTAACAAAACGCCGTCATTTTGTATTGAG
CCTTTAGTGG
Found at i:74099940 original size:40 final size:40
Alignment explanation
Indices: 74099862--74099962 Score: 107
Period size: 40 Copynumber: 2.5 Consensus size: 40
74099852 CGAGTATTAA
*
74099862 CGGCGCTTTTT-AAGAAACGCCGCTATCGGTACACCTTTAG
1 CGGCGCTTTTTGAA-AAACGCCGCTATCGCTACACCTTTAG
** *
74099902 CGGCGCTTTTTGAAAAACGCCGCTAAT-GCTTGATCTTTAG
1 CGGCGCTTTTTGAAAAACGCCGCT-ATCGCTACACCTTTAG
* **
74099942 TGGCATTTTTTGAAAAACGCC
1 CGGCGCTTTTTGAAAAACGCC
74099963 ACAAAATAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 48 0.92
41 4 0.08
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31
Consensus pattern (40 bp):
CGGCGCTTTTTGAAAAACGCCGCTATCGCTACACCTTTAG
Found at i:74100274 original size:22 final size:22
Alignment explanation
Indices: 74100204--74100286 Score: 71
Period size: 22 Copynumber: 3.8 Consensus size: 22
74100194 TATAGTTTAG
* *
74100204 GGTTTACGGTATATGGTTAA-A
1 GGTTTAAGGTTTATGGTTAATA
* *
74100225 GGTTTAATGTTTATGAGTTACTA
1 GGTTTAAGGTTTATG-GTTAATA
* *
74100248 -TTTTAAGGTTTATGGATAATA
1 GGTTTAAGGTTTATGGTTAATA
* *
74100269 GGTTTAGGGATTATGGTT
1 GGTTTAAGGTTTATGGTT
74100287 TAAGGGTGGT
Statistics
Matches: 47, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
21 17 0.36
22 29 0.62
23 1 0.02
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.45
Consensus pattern (22 bp):
GGTTTAAGGTTTATGGTTAATA
Found at i:74100299 original size:25 final size:25
Alignment explanation
Indices: 74100269--74100316 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
74100259 ATGGATAATA
*
74100269 GGTTT-AGGGATTATGGTTTAAGGGT
1 GGTTTAAGGG-TTAGGGTTTAAGGGT
*
74100294 GGTTTAAGGGTTGGGGTTTAAGG
1 GGTTTAAGGGTTAGGGTTTAAGG
74100317 TTTAGGTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.38
Consensus pattern (25 bp):
GGTTTAAGGGTTAGGGTTTAAGGGT
Found at i:74100318 original size:21 final size:21
Alignment explanation
Indices: 74100294--74100349 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
74100284 GTTTAAGGGT
74100294 GGTTTAAGGGTT-GGGGTTTAA
1 GGTTTAAGGGTTAGGGG-TTAA
74100315 GGTTT-AGGTGTTAGGGGTTAA
1 GGTTTAAGG-GTTAGGGGTTAA
*
74100336 GGGTTAAGGGTTAG
1 GGTTTAAGGGTTAG
74100350 TTGTTCATGG
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
20 3 0.10
21 21 0.68
22 7 0.23
ACGTcount: A:0.20, C:0.00, G:0.45, T:0.36
Consensus pattern (21 bp):
GGTTTAAGGGTTAGGGGTTAA
Found at i:74100396 original size:7 final size:7
Alignment explanation
Indices: 74100381--74100421 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
74100371 TGTTCTAAGA
*
74100381 TTTATGG
1 TTTAGGG
74100388 TTTAGGG
1 TTTAGGG
74100395 TTTAGGG
1 TTTAGGG
*
74100402 ATTAGGAG
1 TTTAGG-G
74100410 TTTAGGG
1 TTTAGGG
74100417 TTTAG
1 TTTAG
74100422 ATTAATTAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
7 24 0.80
8 6 0.20
ACGTcount: A:0.20, C:0.00, G:0.37, T:0.44
Consensus pattern (7 bp):
TTTAGGG
Found at i:74100536 original size:7 final size:7
Alignment explanation
Indices: 74100515--74100624 Score: 51
Period size: 7 Copynumber: 15.4 Consensus size: 7
74100505 TTAATTATCA
*
74100515 TTATAGT
1 TTATGGT
*
74100522 TTAGGGT
1 TTATGGT
74100529 TTATGGT
1 TTATGGT
*
74100536 TTAGGGT
1 TTATGGT
*
74100543 ATATGGT
1 TTATGGT
74100550 TTA-GGAT
1 TTATGG-T
**
74100557 TTAAAGT
1 TTATGGT
* **
74100564 GTATGAA
1 TTATGGT
**
74100571 TTACTATT
1 TTA-TGGT
*
74100579 TTAAGGT
1 TTATGGT
*
74100586 TTATGGA
1 TTATGGT
74100593 TTATGGGT
1 TTAT-GGT
* *
74100601 TTAGGGA
1 TTATGGT
74100608 TTATGGT
1 TTATGGT
74100615 TTATGGT
1 TTATGGT
74100622 TTA
1 TTA
74100625 AGGGCAGGGG
Statistics
Matches: 72, Mismatches: 27, Indels: 8
0.67 0.25 0.07
Matches are distributed among these distances:
6 2 0.03
7 60 0.83
8 10 0.14
ACGTcount: A:0.25, C:0.01, G:0.27, T:0.47
Consensus pattern (7 bp):
TTATGGT
Found at i:74100537 original size:14 final size:14
Alignment explanation
Indices: 74100515--74100559 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
74100505 TTAATTATCA
*
74100515 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
74100529 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
* *
74100543 ATATGGTTTAGGAT
1 TTATGGTTTAGGGT
74100557 TTA
1 TTA
74100560 AAGTGTATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:74100603 original size:15 final size:14
Alignment explanation
Indices: 74100583--74100620 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
74100573 ACTATTTTAA
74100583 GGTTTATGGATTAT
1 GGTTTATGGATTAT
*
74100597 GGGTTTAGGGATTAT
1 -GGTTTATGGATTAT
74100612 GGTTTATGG
1 GGTTTATGG
74100621 TTTAAGGGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.18, C:0.00, G:0.37, T:0.45
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:74100603 original size:22 final size:21
Alignment explanation
Indices: 74100578--74100627 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
74100568 GAATTACTAT
*
74100578 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTAT-GG
* *
74100600 TTTAGGGATTATGGTTTATGG
1 TTTAAGGATTATGGATTATGG
74100621 TTTAAGG
1 TTTAAGG
74100628 GCAGGGGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (21 bp):
TTTAAGGATTATGGATTATGG
Found at i:74104378 original size:47 final size:47
Alignment explanation
Indices: 74104327--74104517 Score: 301
Period size: 47 Copynumber: 4.1 Consensus size: 47
74104317 TTAGGATTTT
* * *
74104327 ATGTGATGAATGGGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
74104374 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
74104421 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
74104468 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74104515 ATG
1 ATG
74104518 CGAAATGTGT
Statistics
Matches: 136, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 136 1.00
ACGTcount: A:0.32, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:74104627 original size:46 final size:46
Alignment explanation
Indices: 74104491--74104627 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
74104481 GAACATGTAT
* *
74104491 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
74104537 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
74104583 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
74104628 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:74106321 original size:11 final size:11
Alignment explanation
Indices: 74106301--74106329 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
74106291 TTTAATTTGA
74106301 TAAT-GAATTT
1 TAATAGAATTT
74106311 TAATAGAATTT
1 TAATAGAATTT
74106322 TAATAGAA
1 TAATAGAA
74106330 AATTTTTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.41
Consensus pattern (11 bp):
TAATAGAATTT
Found at i:74111757 original size:9 final size:9
Alignment explanation
Indices: 74111743--74111946 Score: 70
Period size: 9 Copynumber: 23.0 Consensus size: 9
74111733 TATGTATTAC
*
74111743 GTAAGTTAA
1 GTAAGTTAT
*
74111752 GTAAGTTGT
1 GTAAGTTAT
*
74111761 GTAAGTTTT
1 GTAAGTTAT
74111770 GTAAGTTAT
1 GTAAGTTAT
74111779 GTAAGTTAT
1 GTAAGTTAT
*
74111788 G-ATA-TGAT
1 GTA-AGTTAT
* *
74111796 ATACATTTAT
1 GTA-AGTTAT
*
74111806 GTAAGATAT
1 GTAAGTTAT
74111815 GTAAGTTAT
1 GTAAGTTAT
*
74111824 GATACG--AT
1 G-TAAGTTAT
* *
74111832 ATACATTTAT
1 GTA-AGTTAT
74111842 GTAAAG-TAT
1 GT-AAGTTAT
74111851 GTAAGTTAT
1 GTAAGTTAT
*
74111860 G-ATA-TGAT
1 GTA-AGTTAT
* *
74111868 ATACATTTAT
1 GTA-AGTTAT
*
74111878 GTAAGGTAT
1 GTAAGTTAT
*
74111887 GTAAGTCAT
1 GTAAGTTAT
* *
74111896 GATATGATAT
1 G-TAAGTTAT
* *
74111906 AT-ATTTAT
1 GTAAGTTAT
74111914 GT-A-TTAT
1 GTAAGTTAT
* *
74111921 GTAATTTTT
1 GTAAGTTAT
74111930 GTAAGTTAT
1 GTAAGTTAT
74111939 G-AAGTTAT
1 GTAAGTTAT
74111947 TATATGATAT
Statistics
Matches: 142, Mismatches: 38, Indels: 31
0.67 0.18 0.15
Matches are distributed among these distances:
7 8 0.06
8 26 0.18
9 85 0.60
10 22 0.15
11 1 0.01
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:74111809 original size:36 final size:36
Alignment explanation
Indices: 74111769--74111924 Score: 237
Period size: 36 Copynumber: 4.4 Consensus size: 36
74111759 GTGTAAGTTT
74111769 TGTAAGTTATGTAAGTTATGATATGATATACATTTA
1 TGTAAGTTATGTAAGTTATGATATGATATACATTTA
* *
74111805 TGTAAGATATGTAAGTTATGATACGATATACATTTA
1 TGTAAGTTATGTAAGTTATGATATGATATACATTTA
74111841 TGTAAAG-TATGTAAGTTATGATATGATATACATTTA
1 TGT-AAGTTATGTAAGTTATGATATGATATACATTTA
* * *
74111877 TGTAAGGTATGTAAGTCATGATATGATATATATTTA
1 TGTAAGTTATGTAAGTTATGATATGATATACATTTA
74111913 TGT-A-TTATGTAA
1 TGTAAGTTATGTAA
74111925 TTTTTGTAAG
Statistics
Matches: 112, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
34 7 0.06
35 4 0.04
36 98 0.88
37 3 0.03
ACGTcount: A:0.37, C:0.03, G:0.17, T:0.42
Consensus pattern (36 bp):
TGTAAGTTATGTAAGTTATGATATGATATACATTTA
Found at i:74111953 original size:51 final size:52
Alignment explanation
Indices: 74111872--74111975 Score: 165
Period size: 51 Copynumber: 2.0 Consensus size: 52
74111862 TATGATATAC
74111872 ATTTATGTAAGGTATGTAAGTCATGATATGATATATATTTATGTATTATGTA
1 ATTTATGTAAGGTATGTAAGTCATGATATGATATATATTTATGTATTATGTA
* * * *
74111924 ATTTTTGTAAGTTATG-AAGTTATTATATGATATATATTTATGTATTATGTA
1 ATTTATGTAAGGTATGTAAGTCATGATATGATATATATTTATGTATTATGTA
74111975 A
1 A
74111976 GGTATATAAG
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
51 34 0.71
52 14 0.29
ACGTcount: A:0.35, C:0.01, G:0.15, T:0.49
Consensus pattern (52 bp):
ATTTATGTAAGGTATGTAAGTCATGATATGATATATATTTATGTATTATGTA
Found at i:74111986 original size:51 final size:52
Alignment explanation
Indices: 74111879--74111988 Score: 150
Period size: 51 Copynumber: 2.1 Consensus size: 52
74111869 TACATTTATG
* ** * *
74111879 TAAGGTATGTAAGTCATGATATGATATATATTTATGTATTATGTAATTTTTG
1 TAAGTTATGTAAGTCATGATATGATATATATTTATGTATTATGTAAGGTATA
* *
74111931 TAAGTTATG-AAGTTATTATATGATATATATTTATGTATTATGTAAGGTATA
1 TAAGTTATGTAAGTCATGATATGATATATATTTATGTATTATGTAAGGTATA
74111982 TAAGTTA
1 TAAGTTA
74111989 ATCATTTATA
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
51 43 0.84
52 8 0.16
ACGTcount: A:0.35, C:0.01, G:0.16, T:0.47
Consensus pattern (52 bp):
TAAGTTATGTAAGTCATGATATGATATATATTTATGTATTATGTAAGGTATA
Found at i:74112321 original size:20 final size:21
Alignment explanation
Indices: 74112293--74112345 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 21
74112283 TTTATATATC
*
74112293 ATTTCAATTTTCAATGTA-TTTT
1 ATTT-AATTTT-AATATATTTTT
74112315 -TTTAATTTATAATATATTTTT
1 ATTTAATTT-TAATATATTTTT
74112336 ATTTAATTTT
1 ATTTAATTTT
74112346 TTTAAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
20 10 0.37
21 9 0.33
22 8 0.30
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (21 bp):
ATTTAATTTTAATATATTTTT
Found at i:74112824 original size:24 final size:24
Alignment explanation
Indices: 74112792--74112838 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
74112782 TTAACTTAAA
* *
74112792 TGATAAAACAGATGATAATATTTG
1 TGATAAAACAGACGAGAATATTTG
*
74112816 TGATAAAACGGACGAGAATATTT
1 TGATAAAACAGACGAGAATATTT
74112839 CAATAATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.45, C:0.06, G:0.19, T:0.30
Consensus pattern (24 bp):
TGATAAAACAGACGAGAATATTTG
Found at i:74115043 original size:16 final size:17
Alignment explanation
Indices: 74115022--74115056 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
74115012 ACTATTTAAT
74115022 ATATAAATT-AAAAACA
1 ATATAAATTAAAAAACA
74115038 ATATAAATTAAAAAACA
1 ATATAAATTAAAAAACA
74115055 AT
1 AT
74115057 CAGCTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (17 bp):
ATATAAATTAAAAAACA
Found at i:74115192 original size:26 final size:26
Alignment explanation
Indices: 74115163--74115238 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
74115153 AATAATTAGA
* *
74115163 TAAAATTTGAAATCTTGAAAATTTTT
1 TAAAATTTGAATTCTTTAAAATTTTT
74115189 TAAAATTTGAATTCTTTAAAATTTTT
1 TAAAATTTGAATTCTTTAAAATTTTT
*
74115215 TAAAATATGAATTCTTTAAAATTT
1 TAAAATTTGAATTCTTTAAAATTT
74115239 GAAATTATTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.49
Consensus pattern (26 bp):
TAAAATTTGAATTCTTTAAAATTTTT
Found at i:74115201 original size:16 final size:16
Alignment explanation
Indices: 74115182--74115241 Score: 60
Period size: 16 Copynumber: 4.1 Consensus size: 16
74115172 AAATCTTGAA
*
74115182 AATTTTTTAAAATTTG
1 AATTCTTTAAAATTTG
74115198 AATTCTTTAAAA--T-
1 AATTCTTTAAAATTTG
*
74115211 --TT-TTTAAAATATG
1 AATTCTTTAAAATTTG
74115224 AATTCTTTAAAATTTG
1 AATTCTTTAAAATTTG
74115240 AA
1 AA
74115242 ATTATTTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
10 7 0.19
11 2 0.06
12 1 0.03
14 1 0.03
15 2 0.06
16 23 0.64
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (16 bp):
AATTCTTTAAAATTTG
Found at i:74115249 original size:17 final size:17
Alignment explanation
Indices: 74115207--74115255 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
74115197 GAATTCTTTA
*
74115207 AAATTTTTTAAAATATG
1 AAATTATTTAAAATATG
* *
74115224 -AATTCTTTAAAATTTG
1 AAATTATTTAAAATATG
*
74115240 AAATTATTTAATATAT
1 AAATTATTTAAAATAT
74115256 AGATTAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
16 14 0.54
17 12 0.46
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (17 bp):
AAATTATTTAAAATATG
Found at i:74115469 original size:30 final size:29
Alignment explanation
Indices: 74115428--74115531 Score: 122
Period size: 30 Copynumber: 3.6 Consensus size: 29
74115418 ATCTTCTAAA
74115428 CCTTAAACCCTAACCCTTAACCCTATAAC
1 CCTTAAACCCTAACCCTTAACCCTATAAC
** *
74115457 CCTTAAATCCCTAACCCTTGTCCCTTTAAC
1 CCTTAAA-CCCTAACCCTTAACCCTATAAC
* *
74115487 CCTAAAACCCATATCCCTTAACCC-ATAAC
1 CCTTAAACCC-TAACCCTTAACCCTATAAC
74115516 CCTT-AACCACTAACCC
1 CCTTAAACC-CTAACCC
74115532 CCTAAATCTT
Statistics
Matches: 62, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
28 9 0.15
29 18 0.29
30 35 0.56
ACGTcount: A:0.32, C:0.42, G:0.01, T:0.25
Consensus pattern (29 bp):
CCTTAAACCCTAACCCTTAACCCTATAAC
Found at i:74115473 original size:36 final size:35
Alignment explanation
Indices: 74115433--74115574 Score: 94
Period size: 36 Copynumber: 3.9 Consensus size: 35
74115423 CTAAACCTTA
74115433 AACCC-TAACCCTTAACCCTATAACCCTTAAATCCCT
1 AACCCATAACCCTTAACCCTA-AACCC-TAAATCCCT
* ** *
74115469 AACCCTTGTCCCTTTAACCCTAAAACCC-ATATCCCTT
1 AACCCATAACCC-TTAACCCT-AAACCCTAAATCCC-T
* *
74115506 AACCCATAACCCTTAACCACTAACCCCCTAAAT-CTT
1 AACCCATAACCCTTAACC-CTAA-ACCCTAAATCCCT
* * *
74115542 AAACCC-CAACCCTTAAATCATAAACCCTAAATC
1 -AACCCATAACCCTT-AACCCTAAACCCTAAATC
74115575 ATATGCCATA
Statistics
Matches: 83, Mismatches: 13, Indels: 20
0.72 0.11 0.17
Matches are distributed among these distances:
35 8 0.10
36 30 0.36
37 28 0.34
38 16 0.19
39 1 0.01
ACGTcount: A:0.35, C:0.40, G:0.01, T:0.24
Consensus pattern (35 bp):
AACCCATAACCCTTAACCCTAAACCCTAAATCCCT
Found at i:74115523 original size:81 final size:80
Alignment explanation
Indices: 74115363--74115531 Score: 202
Period size: 81 Copynumber: 2.1 Consensus size: 80
74115353 CCCTAAACTC
*
74115363 CTAACCCCTTAACCCCTAAACCTCTAACCCATGTCCCTTTAACCCTAAAACACATATCTTCTAAA
1 CTAA-CCCTTAACCCCTAAACCTCTAACCCATGTCCCTTTAACCCTAAAACACATATCCTCTAAA
*
74115428 CCTTAAACCCTAACC-
65 CCATAAACCCTAACCA
* * *
74115443 CTTAACCCTATAACCCTTAAATCC-CTAACCCTTGTCCCTTTAACCCTAAAACCCATATCC-CTT
1 C-TAACCCT-TAACCCCTAAA-CCTCTAACCCATGTCCCTTTAACCCTAAAACACATATCCTC-T
*
74115506 AACCCAT-AACCCTTAACCA
62 AAACCATAAACCC-TAACCA
74115525 CTAACCC
1 CTAACCC
74115532 CCTAAATCTT
Statistics
Matches: 77, Mismatches: 6, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
80 11 0.14
81 63 0.82
82 3 0.04
ACGTcount: A:0.33, C:0.41, G:0.01, T:0.25
Consensus pattern (80 bp):
CTAACCCTTAACCCCTAAACCTCTAACCCATGTCCCTTTAACCCTAAAACACATATCCTCTAAAC
CATAAACCCTAACCA
Found at i:74115531 original size:14 final size:14
Alignment explanation
Indices: 74115428--74115523 Score: 79
Period size: 15 Copynumber: 6.6 Consensus size: 14
74115418 ATCTTCTAAA
74115428 CCTTAAACCC-TAAC
1 CCTT-AACCCATAAC
74115442 CCTTAACCCTATAAC
1 CCTTAACCC-ATAAC
74115457 CCTTAAATCCC-TAAC
1 CCTT-AA-CCCATAAC
** *
74115472 CCTTGTCCCTTTAAC
1 CCTTAACCC-ATAAC
* *
74115487 CCTAAAACCCATATC
1 CCT-TAACCCATAAC
74115502 CCTTAACCCATAAC
1 CCTTAACCCATAAC
74115516 CCTTAACC
1 CCTTAACC
74115524 ACTAACCCCC
Statistics
Matches: 66, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
13 8 0.12
14 21 0.32
15 29 0.44
16 5 0.08
17 3 0.05
ACGTcount: A:0.31, C:0.42, G:0.01, T:0.26
Consensus pattern (14 bp):
CCTTAACCCATAAC
Found at i:74115543 original size:81 final size:80
Alignment explanation
Indices: 74115364--74115555 Score: 201
Period size: 81 Copynumber: 2.4 Consensus size: 80
74115354 CCTAAACTCC
* * * * *
74115364 TAACCCCTTAACCCCTAAACCTCTAACCCATGTCCCTTTAACCCTAAAACACATATCTTCTAAAC
1 TAACCCCATAAACCTTAAACC-CTAACCCTTGTCCCTTTAACCCTAAAACACATATCCTCTAAAC
*
74115429 CTTAAACCCTAACCCT
65 CATAAACCCTAACCCT
* * * *
74115445 TAACCCTATAACCCTTAAATCCCTAACCCTTGTCCCTTTAACCCTAAAACCCATATCC-CTTAAC
1 TAACCCCATAAACCTTAAA-CCCTAACCCTTGTCCCTTTAACCCTAAAACACATATCCTC-TAAA
74115509 CCAT-AACCCTTAACCAC-
64 CCATAAACCC-TAACC-CT
* * *
74115526 TAACCCCCTAAATCTTAAACCCCAACCCTT
1 TAACCCCATAAACCTTAAACCCTAACCCTT
74115556 AAATCATAAA
Statistics
Matches: 94, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
80 16 0.17
81 75 0.80
82 3 0.03
ACGTcount: A:0.33, C:0.41, G:0.01, T:0.26
Consensus pattern (80 bp):
TAACCCCATAAACCTTAAACCCTAACCCTTGTCCCTTTAACCCTAAAACACATATCCTCTAAACC
ATAAACCCTAACCCT
Found at i:74115572 original size:14 final size:14
Alignment explanation
Indices: 74115549--74115600 Score: 68
Period size: 14 Copynumber: 3.6 Consensus size: 14
74115539 CTTAAACCCC
74115549 AACCCTTAAATCATA
1 AACCC-TAAATCATA
74115564 AACCCTAAATCATA
1 AACCCTAAATCATA
** *
74115578 TGCCATAAATCATA
1 AACCCTAAATCATA
74115592 AACCCTAAA
1 AACCCTAAA
74115601 CTATAATAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
14 26 0.84
15 5 0.16
ACGTcount: A:0.48, C:0.27, G:0.02, T:0.23
Consensus pattern (14 bp):
AACCCTAAATCATA
Found at i:74115572 original size:28 final size:28
Alignment explanation
Indices: 74115541--74115601 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
74115531 CCCTAAATCT
* *
74115541 TAAACCCCAACCCTTAAATCATAAACCC
1 TAAACCACAACCCATAAATCATAAACCC
* * **
74115569 TAAATCATATGCCATAAATCATAAACCC
1 TAAACCACAACCCATAAATCATAAACCC
74115597 TAAAC
1 TAAAC
74115602 TATAATAATA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.46, C:0.31, G:0.02, T:0.21
Consensus pattern (28 bp):
TAAACCACAACCCATAAATCATAAACCC
Found at i:74115786 original size:7 final size:7
Alignment explanation
Indices: 74115774--74115940 Score: 61
Period size: 7 Copynumber: 23.0 Consensus size: 7
74115764 ACACTAATTC
74115774 CCCTAAA
1 CCCTAAA
74115781 CCCTAAA
1 CCCTAAA
74115788 CCCCT-AA
1 -CCCTAAA
***
74115795 CCCTTGTC
1 CCC-TAAA
74115803 CCCTAAA
1 CCCTAAA
74115810 CTCCTAAA
1 C-CCTAAA
*
74115818 CCCCTAAC
1 -CCCTAAA
*
74115826 CCCTATCA
1 CCCTA-AA
*** *
74115834 TATTAAC
1 CCCTAAA
74115841 CCCTAAA
1 CCCTAAA
74115848 CCCCT-AA
1 -CCCTAAA
*
74115855 CCCTTAA
1 CCCTAAA
*
74115862 CCCTTAAC
1 CCC-TAAA
74115870 CCCTAAA
1 CCCTAAA
*
74115877 CCTTAAA
1 CCCTAAA
*
74115884 CCC-CAA
1 CCCTAAA
74115890 CCCTTAAA
1 CCC-TAAA
*
74115898 CCATAAA
1 CCCTAAA
* *
74115905 CCATAAT
1 CCCTAAA
74115912 CCCTAAA
1 CCCTAAA
*
74115919 CCCATAAT
1 CCC-TAAA
*
74115927 CCATAAA
1 CCCTAAA
*
74115934 CCTTAAA
1 CCCTAAA
74115941 ATAGTAACTC
Statistics
Matches: 116, Mismatches: 32, Indels: 24
0.67 0.19 0.14
Matches are distributed among these distances:
6 12 0.10
7 65 0.56
8 38 0.33
9 1 0.01
ACGTcount: A:0.37, C:0.42, G:0.01, T:0.21
Consensus pattern (7 bp):
CCCTAAA
Found at i:74115793 original size:15 final size:15
Alignment explanation
Indices: 74115773--74115935 Score: 77
Period size: 14 Copynumber: 11.1 Consensus size: 15
74115763 CACACTAATT
74115773 CCCCTAAACCCTAAA
1 CCCCTAAACCCTAAA
***
74115788 CCCCT-AACCCTTGT
1 CCCCTAAACCCTAAA
74115802 CCCCTAAACTCCTAAA
1 CCCCTAAAC-CCTAAA
* *
74115818 CCCCTAACCCCT-AT
1 CCCCTAAACCCTAAA
*** *
74115832 CATATTAACCCCTAAA
1 C-CCCTAAACCCTAAA
*
74115848 CCCCT-AACCCTTAA
1 CCCCTAAACCCTAAA
* *
74115862 CCCTTAACCCCTAAA
1 CCCCTAAACCCTAAA
* *
74115877 -CCTTAAACCC-CAA
1 CCCCTAAACCCTAAA
* *
74115890 CCCTTAAACCATAAA
1 CCCCTAAACCCTAAA
* *
74115905 -CCATAATCCCTAAA
1 CCCCTAAACCCTAAA
* * *
74115919 CCCATAATCCATAAA
1 CCCCTAAACCCTAAA
74115934 CC
1 CC
74115936 TTAAAATAGT
Statistics
Matches: 112, Mismatches: 28, Indels: 16
0.72 0.18 0.10
Matches are distributed among these distances:
13 2 0.02
14 53 0.47
15 44 0.39
16 13 0.12
ACGTcount: A:0.36, C:0.44, G:0.01, T:0.20
Consensus pattern (15 bp):
CCCCTAAACCCTAAA
Found at i:74115818 original size:30 final size:29
Alignment explanation
Indices: 74115772--74115878 Score: 115
Period size: 30 Copynumber: 3.6 Consensus size: 29
74115762 TCACACTAAT
*
74115772 TCCCCTAAACCCTAAACCCCTAACCCTTG
1 TCCCCTAAACCCTAAACCCCTAACCCTTA
*
74115801 TCCCCTAAACTCCTAAACCCCTAACCCCTA
1 TCCCCTAAAC-CCTAAACCCCTAACCCTTA
*** *
74115831 TCATATTAACCCCTAAACCCCTAACCCTTA
1 TC-CCCTAAACCCTAAACCCCTAACCCTTA
* * *
74115861 ACCCTTAACCCCTAAACC
1 TCCCCTAAACCCTAAACC
74115879 TTAAACCCCA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
29 24 0.36
30 38 0.58
31 4 0.06
ACGTcount: A:0.31, C:0.47, G:0.01, T:0.21
Consensus pattern (29 bp):
TCCCCTAAACCCTAAACCCCTAACCCTTA
Found at i:74116497 original size:74 final size:75
Alignment explanation
Indices: 74116338--74116510 Score: 251
Period size: 74 Copynumber: 2.3 Consensus size: 75
74116328 CTTTAGCTAC
*
74116338 GTTTTTCAAAAAGCACCGCTAATGCCACTAAAGCTCAACATAAAACAACGACATCTTACTGAATT
1 GTTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTCAACATAAAACAACGACATCTTACTGAATT
*
74116403 TCTTTGCGGC
66 TCTTTGCGGA
* *** *
74116413 GTTTTT-AAAAAGCGCCGCTAATGCCACTAAAGCT-AACATAAAACGACGGTGTCTTGCTGAATT
1 GTTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTCAACATAAAACAACGACATCTTACTGAATT
*
74116476 TTTTTGCGGA
66 TCTTTGCGGA
*
74116486 GTTTTTCAAAAAGAGCCGCTAATGC
1 GTTTTTCAAAAAGCGCCGCTAATGC
74116511 TCGATCTATA
Statistics
Matches: 88, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
73 38 0.43
74 44 0.50
75 6 0.07
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (75 bp):
GTTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTCAACATAAAACAACGACATCTTACTGAATT
TCTTTGCGGA
Found at i:74116547 original size:40 final size:40
Alignment explanation
Indices: 74116481--74116641 Score: 177
Period size: 40 Copynumber: 4.0 Consensus size: 40
74116471 GAATTTTTTT
*
74116481 GCGGAGTTTTTCAAAAAGAGCCGCTAATGCTCGATCTATA
1 GCGGAGTTTTTCAAAAAGAGCTGCTAATGCTCGATCTATA
* * *
74116521 GCGGCGTTTTT-AGAAAAGCGCTGCTAATACTCGATCTATA
1 GCGGAGTTTTTCA-AAAAGAGCTGCTAATGCTCGATCTATA
* * *
74116561 GCGGCGTTTTTCAATAAACG-CCT-CTAATTCTCGATCTATA
1 GCGGAGTTTTTCAA-AAA-GAGCTGCTAATGCTCGATCTATA
* * *
74116601 GCGAAGTTTTT-AAAAAAAGCTGCTAATGCTCAATCTATA
1 GCGGAGTTTTTCAAAAAGAGCTGCTAATGCTCGATCTATA
74116640 GC
1 GC
74116642 ACTGTTTTTT
Statistics
Matches: 103, Mismatches: 12, Indels: 13
0.80 0.09 0.10
Matches are distributed among these distances:
38 5 0.05
39 20 0.19
40 71 0.69
41 6 0.06
42 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30
Consensus pattern (40 bp):
GCGGAGTTTTTCAAAAAGAGCTGCTAATGCTCGATCTATA
Found at i:74116662 original size:80 final size:80
Alignment explanation
Indices: 74116486--74116650 Score: 201
Period size: 80 Copynumber: 2.1 Consensus size: 80
74116476 TTTTTGCGGA
* * ** **
74116486 GTTTTTCAA-AAAGAGCCGCTAATGCTCGATCTATAGCGGCGTTTTTAGAAAAGCGCTGCTAATA
1 GTTTTTCAATAAA-CGCCTCTAATGCTCGATCTATAGCGAAGTTTTTAGAAAAAAGCTGCTAATA
* *
74116550 CTCGATCTATAGCGGC
65 CTCAATCTATAGCGAC
* *
74116566 GTTTTTCAATAAACGCCTCTAATTCTCGATCTATAGCGAAGTTTTTA-AAAAAAGCTGCTAATGC
1 GTTTTTCAATAAACGCCTCTAATGCTCGATCTATAGCGAAGTTTTTAGAAAAAAGCTGCTAATAC
74116630 TCAATCTATAGC-AC
66 TCAATCTATAGCGAC
74116644 TGTTTTT
1 -GTTTTT
74116651 TGTCCAAACG
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 31 0.42
80 38 0.52
81 3 0.04
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (80 bp):
GTTTTTCAATAAACGCCTCTAATGCTCGATCTATAGCGAAGTTTTTAGAAAAAAGCTGCTAATAC
TCAATCTATAGCGAC
Found at i:74118919 original size:27 final size:27
Alignment explanation
Indices: 74118884--74118936 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
74118874 CATCAAGAAT
* *
74118884 TAAGGAATAGGGATCTCTCTTTTTGAA
1 TAAGAAATAGGGAGCTCTCTTTTTGAA
74118911 TAAGAAATAGGGAGCTCTCTTTTTGA
1 TAAGAAATAGGGAGCTCTCTTTTTGA
74118937 TCTCTCTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (27 bp):
TAAGAAATAGGGAGCTCTCTTTTTGAA
Found at i:74119672 original size:19 final size:19
Alignment explanation
Indices: 74119644--74119680 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
74119634 TTGATAGTTG
74119644 AAAATATTTAAAAATAATC
1 AAAATATTTAAAAATAATC
*
74119663 AAAATTTTTAAAAATAAT
1 AAAATATTTAAAAATAAT
74119681 AAATTTTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAATATTTAAAAATAATC
Found at i:74119684 original size:17 final size:18
Alignment explanation
Indices: 74119644--74119687 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
74119634 TTGATAGTTG
*
74119644 AAAATATTTAAAAATAAT
1 AAAATTTTTAAAAATAAT
74119662 CAAAATTTTTAAAAATAAT
1 -AAAATTTTTAAAAATAAT
74119681 -AAATTTT
1 AAAATTTT
74119688 ATCATAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 7 0.29
19 17 0.71
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (18 bp):
AAAATTTTTAAAAATAAT
Found at i:74122875 original size:20 final size:20
Alignment explanation
Indices: 74122850--74122889 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
74122840 ACCTAACCTT
*
74122850 ATACATACAACAATCGATTC
1 ATACATACAACAATCAATTC
*
74122870 ATACATGCAACAATCAATTC
1 ATACATACAACAATCAATTC
74122890 TTACCTAGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.25, G:0.05, T:0.25
Consensus pattern (20 bp):
ATACATACAACAATCAATTC
Found at i:74124926 original size:21 final size:21
Alignment explanation
Indices: 74124902--74124945 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
74124892 ATTTTGCCTA
* *
74124902 GAGTGTGAATTGAATTAAATT
1 GAGTATGAAATGAATTAAATT
*
74124923 GAGTATGAAATGGATTAAATT
1 GAGTATGAAATGAATTAAATT
74124944 GA
1 GA
74124946 TGTTAAATTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.25, T:0.34
Consensus pattern (21 bp):
GAGTATGAAATGAATTAAATT
Found at i:74126949 original size:49 final size:47
Alignment explanation
Indices: 74126782--74127004 Score: 148
Period size: 49 Copynumber: 4.6 Consensus size: 47
74126772 GAGATGTGTC
* * ** * *
74126782 AGTGTAAGATCATGTCTGGGACATGGCATCGGCAAGTATAGATGTG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTG-ATGGATGAGCT
* * * * *
74126829 CAATATAAGACCATGTTTGGGACATGGCATCAGTAC-AGATATGTGA-AAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTG--ATG-GATGAGCT
* * * * * * *
74126880 AGTGTAAGACCAAGTTTGGGACATGGCGTCGGCTTTGCTTTTGAT-AGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTG--ATGGATGAGCT
*
74126929 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCT
*
74126976 AGTGTAAGACCATGCCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
74127005 TGGCATCATA
Statistics
Matches: 139, Mismatches: 27, Indels: 19
0.75 0.15 0.10
Matches are distributed among these distances:
46 4 0.03
47 30 0.22
48 30 0.22
49 38 0.27
50 34 0.24
51 3 0.02
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCT
Found at i:74128204 original size:21 final size:20
Alignment explanation
Indices: 74128180--74128219 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
74128170 GTTATAATGA
*
74128180 CCACATAGACGTGTTGCCCTT
1 CCACACAGACGTG-TGCCCTT
*
74128201 CCACACAGGCGTGTGCCCT
1 CCACACAGACGTGTGCCCT
74128220 ATTTCAAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.17, C:0.38, G:0.23, T:0.23
Consensus pattern (20 bp):
CCACACAGACGTGTGCCCTT
Found at i:74133133 original size:25 final size:24
Alignment explanation
Indices: 74133105--74133157 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
74133095 CATTACAGTA
*
74133105 GCTCTTATTGAGCATCCTGATATAG
1 GCTCTTATTAAGCATCCTGATAT-G
* * *
74133130 GCTCTTCTTAAGCTTCTTGATATG
1 GCTCTTATTAAGCATCCTGATATG
74133154 GCTC
1 GCTC
74133158 GCTTGAATAG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.40
Consensus pattern (24 bp):
GCTCTTATTAAGCATCCTGATATG
Found at i:74136326 original size:70 final size:71
Alignment explanation
Indices: 74136160--74136892 Score: 541
Period size: 70 Copynumber: 10.5 Consensus size: 71
74136150 GTAAGCTCAT
** * * * *
74136160 GCTAACTATTTTGGAGGCTGCGGTATTGAACCT--ATGAACCTTAAGGTTACATCTTGAAGCTTG
1 GCTAACTATTTTGGAGGCTGTAGTATTGAACCTGCA-GAGCCTTAAGGTTACAGCTGGGAGCTTG
74136223 AGCTCGC
65 AGCTCGC
** * *** * * * *
74136230 ATTAACAATTTTGGAGGCTACGGTATTAAACCTCCAG-GCCTTAAGATTACAGTTGGGAGCTTGA
1 GCTAACTATTTTGGAGGCTGTAGTATTGAACCTGCAGAGCCTTAAGGTTACAGCTGGGAGCTTGA
*
74136294 GCTCAC
66 GCTCGC
* * * * * * * *
74136300 GTTAACTATTTTGGAGGTTGTAGTATTGAACCTG-GGAGTCTTAGGGTTACAACTAGGAGTTTGA
1 GCTAACTATTTTGGAGGCTGTAGTATTGAACCTGCAGAGCCTTAAGGTTACAGCTGGGAGCTTGA
*
74136364 GCTTGC
66 GCTCGC
* * * * * *
74136370 GTTAAATGTTTTGGAGTTGC-G-A-TATTGAACCTAC-GAGCCTTAAGGTTATAGTTGGGAGCTT
1 GCTAACTATTTTGGAG--GCTGTAGTATTGAACCTGCAGAGCCTTAAGGTTACAGCTGGGAGCTT
*
74136431 GAGCTTGC
64 GAGCTCGC
* * * * * *
74136439 GCTAACTGTTTTGGAGGCTG-CGATATTGAACCTAC-GAGCCTTAAAGTTATAGCTAGGAGCTTG
1 GCTAACTATTTTGGAGGCTGTAG-TATTGAACCTGCAGAGCCTTAAGGTTACAGCTGGGAGCTTG
* *
74136502 AGCTTGG
65 AGCTCGC
* * * *
74136509 GCTAACTGATTTTGGGGGCTACG-AGT-TTGAACCT--ATGAGCCTTAAGGTAATAGCTGGCAGC
1 GCTAACT-ATTTTGGAGGCT--GTAGTATTGAACCTGCA-GAGCCTTAAGGTTACAGCTGGGAGC
*
74136570 TTGAGCTCTC
62 TTGAGCTCGC
* * * ** *
74136580 GGTAACTATTTTGGAGGCTGTAATATTGAACTTGCA-AGCCTTTGGGTTACAGCTAGGAGCTTGA
1 GCTAACTATTTTGGAGGCTGTAGTATTGAACCTGCAGAGCCTTAAGGTTACAGCTGGGAGCTTGA
* *
74136644 TCTCGT
66 GCTCGC
* * * * * * *
74136650 GCTAACTATTTTGGAGACTGTGGTATTGAAACTGCA-AGCTTTAAGATTACAGTTGGGAGTTTGA
1 GCTAACTATTTTGGAGGCTGTAGTATTGAACCTGCAGAGCCTTAAGGTTACAGCTGGGAGCTTGA
*
74136714 GCTCAC
66 GCTCGC
* * ** * * *
74136720 GCTAACTATGTTGGAGGTTGT-GATATTGAATATGC-GAGCCTTAAGGTTACAACTGGGAGTTTA
1 GCTAACTATTTTGGAGGCTGTAG-TATTGAACCTGCAGAGCCTTAAGGTTACAGCTGGGAGCTTG
**
74136783 AGCTTAC
65 AGCTCGC
* * *
74136790 GCTAACTATTTTGGAGGCTATAGTATTGAACCTGTA-AGCCTTAGGGTTACAGCTGGGAGCTTGA
1 GCTAACTATTTTGGAGGCTGTAGTATTGAACCTGCAGAGCCTTAAGGTTACAGCTGGGAGCTTGA
74136854 GCTCGC
66 GCTCGC
* * * **
74136860 ACTAACTGTTTTGGAGGTTACAGTATTGAACCT
1 GCTAACTATTTTGGAGGCTGTAGTATTGAACCT
74136893 TTGAGCCATG
Statistics
Matches: 527, Mismatches: 114, Indels: 44
0.77 0.17 0.06
Matches are distributed among these distances:
67 2 0.00
68 2 0.00
69 56 0.11
70 406 0.77
71 55 0.10
72 4 0.01
73 2 0.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (71 bp):
GCTAACTATTTTGGAGGCTGTAGTATTGAACCTGCAGAGCCTTAAGGTTACAGCTGGGAGCTTGA
GCTCGC
Found at i:74136899 original size:140 final size:140
Alignment explanation
Indices: 74136153--74136899 Score: 605
Period size: 140 Copynumber: 5.3 Consensus size: 140
74136143 TGGGAACGTA
* * * * * * *
74136153 AGCTCATGCTAACTATTTTGGAGGCTGCGGTATTGAACCTATGAACCTTAAGGTTACATCTTGAA
1 AGCTCACGCTAACTATTTTGGAGGTTGCAGTATTGAACCTATGAGCCTTAAGGTTACAACTAGGA
* ** * ** * * * *
74136218 GCTTGAGCTCGCATTAACAATTTTGGAGGCTACGGTATTAAACCTCCAGGCCTTAAGATTACAGT
66 GCTTGAGCTTGCGCTAACTATTTTGGAGGCTATAGTATTGAACCTACAAGCCTTAAGGTTACAGT
74136283 TGGGAGCTTG
131 TGGGAGCTTG
* * ** * *
74136293 AGCTCACGTTAACTATTTTGGAGGTTGTAGTATTGAACCTGGGAGTCTTAGGGTTACAACTAGGA
1 AGCTCACGCTAACTATTTTGGAGGTTGCAGTATTGAACCTATGAGCCTTAAGGTTACAACTAGGA
* * * * * * *
74136358 GTTTGAGCTTGCGTTAAATGTTTTGGA-G-T-TGCGATATTGAACCTACGAGCCTTAAGGTTATA
66 GCTTGAGCTTGCGCTAACTATTTTGGAGGCTAT-AG-TATTGAACCTACAAGCCTTAAGGTTACA
74136420 GTTGGGAGCTTG
129 GTTGGGAGCTTG
** * * * * * *
74136432 AGCTTGCGCTAACTGTTTTGGAGGCTGC-GATATTGAACCTACGAGCCTTAAAGTTATAGCTAGG
1 AGCTCACGCTAACTATTTTGGAGGTTGCAG-TATTGAACCTATGAGCCTTAAGGTTACAACTAGG
* * * ** * *
74136496 AGCTTGAGCTTGGGCTAACTGATTTTGGGGGCTACGAGT-TTGAACCTATGAGCCTTAAGGTAAT
65 AGCTTGAGCTTGCGCTAACT-ATTTTGGAGGCTA-TAGTATTGAACCTACAAGCCTTAAGGTTAC
* *
74136560 AGCTGGCAGCTTG
128 AGTTGGGAGCTTG
* * * * * ** *
74136573 AGCTCTCGGTAACTATTTTGGAGGCTGTAATATTGAA-CT-TGCAAGCCTTTGGGTTACAGCTAG
1 AGCTCACGCTAACTATTTTGGAGGTTGCAGTATTGAACCTATG--AGCCTTAAGGTTACAACTAG
* * * * * * * * * *
74136636 GAGCTTGATCTCGTGCTAACTATTTTGGAGACTGTGGTATTGAAACTGCAAGCTTTAAGATTACA
64 GAGCTTGAGCTTGCGCTAACTATTTTGGAGGCTATAGTATTGAACCTACAAGCCTTAAGGTTACA
*
74136701 GTTGGGAGTTTG
129 GTTGGGAGCTTG
* * *
74136713 AGCTCACGCTAACTATGTTGGAGGTTG-TGATATTGAA--TATGCGAGCCTTAAGGTTACAACTG
1 AGCTCACGCTAACTATTTTGGAGGTTGCAG-TATTGAACCTAT--GAGCCTTAAGGTTACAACTA
* * * ** *
74136775 GGAGTTTAAGCTTACGCTAACTATTTTGGAGGCTATAGTATTGAACCTGTAAGCCTTAGGGTTAC
63 GGAGCTTGAGCTTGCGCTAACTATTTTGGAGGCTATAGTATTGAACCTACAAGCCTTAAGGTTAC
*
74136840 AGCTGGGAGCTTG
128 AGTTGGGAGCTTG
* * * * *
74136853 AGCTCGCACTAACTGTTTTGGAGGTTACAGTATTGAACCTTTGAGCC
1 AGCTCACGCTAACTATTTTGGAGGTTGCAGTATTGAACCTATGAGCC
74136900 ATGGTAATAT
Statistics
Matches: 473, Mismatches: 115, Indels: 38
0.76 0.18 0.06
Matches are distributed among these distances:
138 3 0.01
139 104 0.22
140 260 0.55
141 100 0.21
142 5 0.01
143 1 0.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (140 bp):
AGCTCACGCTAACTATTTTGGAGGTTGCAGTATTGAACCTATGAGCCTTAAGGTTACAACTAGGA
GCTTGAGCTTGCGCTAACTATTTTGGAGGCTATAGTATTGAACCTACAAGCCTTAAGGTTACAGT
TGGGAGCTTG
Found at i:74150874 original size:11 final size:11
Alignment explanation
Indices: 74150849--74150881 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
74150839 TATAAAATTT
74150849 AAATTT-ATCA
1 AAATTTCATCA
*
74150859 AAATTTCATGA
1 AAATTTCATCA
74150870 AAATTTCATCA
1 AAATTTCATCA
74150881 A
1 A
74150882 CTTCTCATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 6 0.30
11 14 0.70
ACGTcount: A:0.48, C:0.12, G:0.03, T:0.36
Consensus pattern (11 bp):
AAATTTCATCA
Found at i:74154382 original size:30 final size:30
Alignment explanation
Indices: 74154348--74154405 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
74154338 TCCTAAACTC
74154348 GAAACACAAAAAT-CTCAGGATAAAATTTTT
1 GAAACACAAAAATCCT-AGGATAAAATTTTT
* * *
74154378 GAAACCCAAGAATCCTGGGATAAAATTT
1 GAAACACAAAAATCCTAGGATAAAATTT
74154406 ACATCACATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.47, C:0.16, G:0.14, T:0.24
Consensus pattern (30 bp):
GAAACACAAAAATCCTAGGATAAAATTTTT
Found at i:74154792 original size:5 final size:5
Alignment explanation
Indices: 74154782--74154814 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
74154772 GGAGATTGTG
74154782 AAAAT AAAAT AAAAT AAAAT AAAGA- AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAA-AT AAAAT AAA
74154815 TTTTTACGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 1 0.04
5 24 0.92
6 1 0.04
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:74155198 original size:13 final size:13
Alignment explanation
Indices: 74155180--74155207 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
74155170 ACATATTATA
74155180 AATATTTTGTGTT
1 AATATTTTGTGTT
74155193 AATATTTTGTGTT
1 AATATTTTGTGTT
74155206 AA
1 AA
74155208 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:74156645 original size:40 final size:40
Alignment explanation
Indices: 74156597--74156842 Score: 372
Period size: 40 Copynumber: 6.2 Consensus size: 40
74156587 GGACTAAGAT
74156597 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
74156637 CCGAAGGCATTTGTGCTAGTTACTATAACCGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAG-TC
* * *
74156677 TCGAAGGCATTTGTGCTAGTTACTATAACCGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAG-TC
74156717 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
74156757 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
74156797 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
74156836 CTGAAGG
1 CCGAAGG
74156843 TACTTGGGTT
Statistics
Matches: 194, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
39 15 0.08
40 178 0.92
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:74156794 original size:120 final size:120
Alignment explanation
Indices: 74156581--74156842 Score: 431
Period size: 120 Copynumber: 2.2 Consensus size: 120
74156571 TATTCGGATG
74156581 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
* *
74156646 TTTGTGCTAGTTACTATAACCGGACTAAGAT-TCGAAGGCATTTGTGCTAGTTACT
66 TTTGTGCTAGTTACTATAACCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
74156701 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
* * *
74156766 TTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
66 TTTGTGCTAGTTACTATAACCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74156821 ATATCCGG-CTAA-ATCCTGAAGG
1 ATAACCGGACTAAGATCC-GAAGG
74156843 TACTTGGGTT
Statistics
Matches: 134, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
118 4 0.03
119 10 0.07
120 120 0.90
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.28
Consensus pattern (120 bp):
ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTTACTATAACCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:74163365 original size:13 final size:13
Alignment explanation
Indices: 74163347--74163374 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
74163337 ACATATTATA
74163347 AATATTTTGTGTT
1 AATATTTTGTGTT
74163360 AATATTTTGTGTT
1 AATATTTTGTGTT
74163373 AA
1 AA
74163375 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:74164836 original size:40 final size:39
Alignment explanation
Indices: 74164788--74165033 Score: 336
Period size: 40 Copynumber: 6.2 Consensus size: 39
74164778 GGACTAAGAT
74164788 CCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCC-GGCTAAGTC
*
74164828 CCGAAGGCATTTGTGCTAGTTACTATAACCGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGG-CTAAG-TC
* *
74164868 CTGAAGGCATTT-TGGCTAGTTACTATAACCGGACTAAGAT-
1 CCGAAGGCATTTGT-GCTAGTTACTATATCCGG-CTAAG-TC
*
74164908 CCGAAGGCATTTGTGCTATTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCC-GGCTAAGTC
74164948 CCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCC-GGCTAAGTC
* * *
74164988 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGCTAAGTC
74165027 CCGAAGG
1 CCGAAGG
74165034 TACTTGGGTT
Statistics
Matches: 190, Mismatches: 10, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 19 0.10
40 167 0.88
41 4 0.02
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGCTAAGTC
Found at i:74164985 original size:120 final size:120
Alignment explanation
Indices: 74164772--74165033 Score: 390
Period size: 120 Copynumber: 2.2 Consensus size: 120
74164762 TATTCGGATG
74164772 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAGTCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAGTCCCGAAGGCA
* *
74164837 TTTGTGCTAGTTACTATAACCGGACTAAGAT-CTGAAGGCATTT-TGGCTAGTTACT
66 TTTGTGCTAGTTACTATAACCGGACTAAG-TCCCGAAGGCATTTGT-GCGAGTTACT
* *
74164892 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTATTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAGTCCCGAAGGCA
* *
74164957 TTTGTGCTAGTTACTATATCCAGG-CTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
66 TTTGTGCTAGTTACTATAACC-GGACTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
74165012 ATATCCGG-CTAA-ATCCCGAAGG
1 ATAACCGGACTAAGAT-CCGAAGG
74165034 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
118 2 0.02
119 12 0.09
120 114 0.87
121 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (120 bp):
ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTTACTATAACCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:74171505 original size:13 final size:13
Alignment explanation
Indices: 74171483--74171530 Score: 69
Period size: 13 Copynumber: 3.7 Consensus size: 13
74171473 TATTGAAATA
74171483 AAATGGTTATATG
1 AAATGGTTATATG
*
74171496 AAATGATTATATG
1 AAATGGTTATATG
*
74171509 AAGTGGTTATATG
1 AAATGGTTATATG
*
74171522 AATTGGTTA
1 AAATGGTTA
74171531 CATAGAAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.40
Consensus pattern (13 bp):
AAATGGTTATATG
Found at i:74173426 original size:24 final size:24
Alignment explanation
Indices: 74173372--74173501 Score: 70
Period size: 24 Copynumber: 5.4 Consensus size: 24
74173362 TGGCTATCCG
* * *
74173372 GAGCTTCCC-ATTATTGTTCTTTGT
1 GAGCTTCCCGATTATGGCTC-TTAT
*
74173396 GAACTTCCCGATTATGGCTCTTAT
1 GAGCTTCCCGATTATGGCTCTTAT
* * * * **
74173420 GAGCTTCCTGTTATATAGCCCGGAT
1 GAGCTTCCCGAT-TATGGCTCTTAT
* *
74173445 AAGCTTCTCGA-TA-GGCTCTTTAT
1 GAGCTTCCCGATTATGGCTC-TTAT
* *
74173468 GAGCTTCCCGA-AATGGCTCTATGT
1 GAGCTTCCCGATTATGGCTCT-TAT
74173492 GAGCTTCCCG
1 GAGCTTCCCG
74173502 TTACAAGACT
Statistics
Matches: 78, Mismatches: 23, Indels: 10
0.70 0.21 0.09
Matches are distributed among these distances:
22 3 0.04
23 15 0.19
24 37 0.47
25 23 0.29
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (24 bp):
GAGCTTCCCGATTATGGCTCTTAT
Found at i:74175075 original size:24 final size:24
Alignment explanation
Indices: 74175022--74175075 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
74175012 TAAATAGTGT
** *
74175022 TTTGGTATATGTGTGTTATGATCA
1 TTTGGTATATGTAAGTTATGATAA
*
74175046 TCTGGTATATGTAAGTTATGATAA
1 TTTGGTATATGTAAGTTATGATAA
74175070 TTTGGT
1 TTTGGT
74175076 TACGTTTGTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.04, G:0.24, T:0.48
Consensus pattern (24 bp):
TTTGGTATATGTAAGTTATGATAA
Found at i:74182248 original size:53 final size:53
Alignment explanation
Indices: 74182071--74182277 Score: 198
Period size: 53 Copynumber: 3.8 Consensus size: 53
74182061 ATTAGGGTTT
* * * * * *
74182071 AAGGATACCAAGTAAGACCATGCCAAGGCATAGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * *
74182125 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATAAACTACGATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
74182180 AAAGATTCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * *
74182233 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
74182278 TAAAAAGAAA
Statistics
Matches: 120, Mismatches: 31, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
53 45 0.38
54 36 0.30
55 39 0.32
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:74184805 original size:43 final size:43
Alignment explanation
Indices: 74184725--74184842 Score: 107
Period size: 43 Copynumber: 2.7 Consensus size: 43
74184715 CAATGCCAAC
* * *
74184725 GTCCCAGATGTGGTCTTACATGTAATCACATGCCGATGTC-ACT
1 GTCCCAGATGTGGTCTTACACGTAATCACATGACGATGCCGA-T
*
74184768 GTCCCAGATAG-GGTCTTACACG-AATCACAATTACGATGCCGAT
1 GTCCCAGAT-GTGGTCTTACACGTAATCAC-ATGACGATGCCGAT
** * * *
74184811 GTCCCAGACATGGTATTACTCGAAATCACATG
1 GTCCCAGATGTGGTCTTACACGTAATCACATG
74184843 TTGATGCCAA
Statistics
Matches: 61, Mismatches: 9, Indels: 10
0.76 0.11 0.12
Matches are distributed among these distances:
42 6 0.10
43 47 0.77
44 8 0.13
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (43 bp):
GTCCCAGATGTGGTCTTACACGTAATCACATGACGATGCCGAT
Found at i:74191704 original size:55 final size:56
Alignment explanation
Indices: 74191636--74191764 Score: 145
Period size: 55 Copynumber: 2.3 Consensus size: 56
74191626 GTATATATGT
* * * * * *
74191636 GCACGCCCATGTTATTTTGA-CAGCTTCGACCACGGGTGGTAGGCATGGGCGTGTC
1 GCACGCCCGTGTTAATTTGATCAGCTTCGACCACGGGTGATAGCCACGAGCGTGTC
* * * * *
74191691 GCACGCCCGTGTTAATTT-ATCAGTTTCTACCACGGTTTATAGCCACGAGCGTGTT
1 GCACGCCCGTGTTAATTTGATCAGCTTCGACCACGGGTGATAGCCACGAGCGTGTC
74191746 GCACGCCCGTGTTAATTTG
1 GCACGCCCGTGTTAATTTG
74191765 GTAGGATTAC
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 60 0.98
ACGTcount: A:0.18, C:0.26, G:0.27, T:0.29
Consensus pattern (56 bp):
GCACGCCCGTGTTAATTTGATCAGCTTCGACCACGGGTGATAGCCACGAGCGTGTC
Found at i:74195241 original size:17 final size:18
Alignment explanation
Indices: 74195221--74195254 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
74195211 ACACACAAAT
74195221 TAATTCAG-CACATTAAC
1 TAATTCAGACACATTAAC
*
74195238 TAATTTAGACACATTAA
1 TAATTCAGACACATTAA
74195255 TTTTTGGCTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.32
Consensus pattern (18 bp):
TAATTCAGACACATTAAC
Found at i:74195545 original size:24 final size:23
Alignment explanation
Indices: 74195509--74195562 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
74195499 ATTAAGACCT
*
74195509 AATTAACTAATTTAACTAACAGCA
1 AATTAAATAATTTAA-TAACAGCA
* * **
74195533 AATTAAATGATTTTATTCCAGCA
1 AATTAAATAATTTAATAACAGCA
74195556 AATTAAA
1 AATTAAA
74195563 CGAAAAAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 13 0.52
24 12 0.48
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (23 bp):
AATTAAATAATTTAATAACAGCA
Found at i:74202510 original size:24 final size:23
Alignment explanation
Indices: 74202474--74202527 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
74202464 ATTAAGACCT
*
74202474 AATTAACTAATTTAACTAACAGTA
1 AATTAAATAATTTAA-TAACAGTA
* * **
74202498 AATTAAATGATTTTATTCCAGTA
1 AATTAAATAATTTAATAACAGTA
74202521 AATTAAA
1 AATTAAA
74202528 CGAAAAAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 13 0.52
24 12 0.48
ACGTcount: A:0.48, C:0.09, G:0.06, T:0.37
Consensus pattern (23 bp):
AATTAAATAATTTAATAACAGTA
Found at i:74210040 original size:43 final size:42
Alignment explanation
Indices: 74209873--74210042 Score: 141
Period size: 43 Copynumber: 4.0 Consensus size: 42
74209863 ATATCGTACA
* * * * *
74209873 ATGCTAACGTCCCAGACCTGGTCTTACATGTAATCACATGTTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATG-AAACACATATCG
* * *
74209916 ATGCC-ACTGTCCTAGACAG-GGTCTTACACGAATCACA-ATTACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAACACATA-T-CG
* * *
74209959 ATGCCGATGTCCCAGACATGGTCTTAC-TCGAAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACAT-GAAA-CACATATCG
74210002 ATGCCAACGTCCCAGACGTGGTCTTACATGAGAACACATAT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGA-AACACATAT
74210043 TGGAAATCCT
Statistics
Matches: 102, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
42 10 0.10
43 82 0.80
44 9 0.09
45 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAACACATATCG
Found at i:74215430 original size:16 final size:18
Alignment explanation
Indices: 74215398--74215431 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
74215388 TATTTTTCAC
74215398 AATAACATATATTATTAT
1 AATAACATATATTATTAT
74215416 AATAACAT-T-TTATTAT
1 AATAACATATATTATTAT
74215432 TTATTTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 1 0.06
18 8 0.50
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (18 bp):
AATAACATATATTATTAT
Found at i:74217016 original size:275 final size:273
Alignment explanation
Indices: 74216529--74217077 Score: 945
Period size: 275 Copynumber: 2.0 Consensus size: 273
74216519 TCAATGTTCT
* *
74216529 CGGTTTGATCCCGAACCATTCTAATTGCATGTTTTAGGGCCTTAAAGGCCCTTTTTATGGATTTA
1 CGGTTTGATCCCGAACCATTCTAATTGCACGTTTTAGGGCCTTAAAGGCCCTTTTTAGGGATTTA
74216594 TTGGATGAATACGAGGGAATTAATTTAAAAAAAATTATGCCCCGAACAAGTAAGATAAGTCTGGT
66 TTGGATGAATACGAGGGAATTAATTTAAAAAAAATTATGCCCCGAACAAGTAAGATAAGTCTGGT
* * *
74216659 AACGTCTCGTGCTCGACTCTGGTGACGATCTTGGGTATGGGGTGATACAAGGTCGACTAAAATCT
131 AACGCCTCGTGCTCGACTCTGGTGACGATCTCGGGTATGGGGTGATACAAGCTCGACTAAAATCT
74216724 AGTCGAACACCCAAGAATATGAATATTTGGGAGAAGATAGACCAATCAATATTATGCAATTATTG
196 AGTCGAACACCCAAGAATATGAATATTTGGGAGAAGATAGACCAATCAATATTATGCAATTATTG
74216789 TAGGAACCTAGGG
261 TAGGAACCTAGGG
* * * *
74216802 CGGTTTGATCTCGAACCGTTCTAATTGTACGTTTTAGGGCCTTGAAGGCCCTTTTTAGGGATTTA
1 CGGTTTGATCCCGAACCATTCTAATTGCACGTTTTAGGGCCTTAAAGGCCCTTTTTAGGGATTTA
74216867 TTGGATGAATACGAGGGAATTAATTTAAAAAAAAATTTATGCCCCGAACAAGTAAGATAAGTCTG
66 TTGGATGAATACGAGGGAATTAATTT-AAAAAAAA-TTATGCCCCGAACAAGTAAGATAAGTCTG
* * * *
74216932 GTAACGCCTCGTGCTTGACTCTGGTGATGGTCTCGGGTATGGGGTGTTACAAGCTCGACTAAAAT
129 GTAACGCCTCGTGCTCGACTCTGGTGACGATCTCGGGTATGGGGTGATACAAGCTCGACTAAAAT
* *
74216997 CTAGTCGAATACGCAAGAATATGAATATTTGGGAGAAGATAGACCAATCAATATTATGCAATTAT
194 CTAGTCGAACACCCAAGAATATGAATATTTGGGAGAAGATAGACCAATCAATATTATGCAATTAT
74217062 TGTAGGAACCTAGGG
259 TGTAGGAACCTAGGG
74217077 C
1 C
74217078 ATAGTAAGAC
Statistics
Matches: 259, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
273 85 0.33
274 8 0.03
275 166 0.64
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (273 bp):
CGGTTTGATCCCGAACCATTCTAATTGCACGTTTTAGGGCCTTAAAGGCCCTTTTTAGGGATTTA
TTGGATGAATACGAGGGAATTAATTTAAAAAAAATTATGCCCCGAACAAGTAAGATAAGTCTGGT
AACGCCTCGTGCTCGACTCTGGTGACGATCTCGGGTATGGGGTGATACAAGCTCGACTAAAATCT
AGTCGAACACCCAAGAATATGAATATTTGGGAGAAGATAGACCAATCAATATTATGCAATTATTG
TAGGAACCTAGGG
Found at i:74226218 original size:110 final size:108
Alignment explanation
Indices: 74226072--74226290 Score: 366
Period size: 110 Copynumber: 2.0 Consensus size: 108
74226062 CAACAACACT
* *
74226072 ATTGGCCAATTGGGCCACTAAATGACTAAAAACGAGGCATTTATACTTATTAGCTTAAAATCTAA
1 ATTGGCCAATTGGGCCACCAAATGACTAAAAACGAGGCATTTACACTTATTAGCTTAAAATCTAA
74226137 AAATTAAGAAAAAGACACTACTTTTCTTGAGAATAAGCTCCTTA
66 AAATTAAG-AAAAGACACTACTTTTCTTGAGAATAAGCTCCTTA
*
74226181 ATTGGCCAAGTTGGGCCTCCAAATGACTAAAAACGAGGCATTTACACTTATTAGCTTAAAATCTA
1 ATTGGCCAA-TTGGGCCACCAAATGACTAAAAACGAGGCATTTACACTTATTAGCTTAAAATCTA
* * *
74226246 AAAGTTACGAAAAGACACTACTTTTCTTGAGAATAAGCTCTTTA
65 AAAATTAAGAAAAGACACTACTTTTCTTGAGAATAAGCTCCTTA
74226290 A
1 A
74226291 GTATATCGGG
Statistics
Matches: 103, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
109 44 0.43
110 59 0.57
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (108 bp):
ATTGGCCAATTGGGCCACCAAATGACTAAAAACGAGGCATTTACACTTATTAGCTTAAAATCTAA
AAATTAAGAAAAGACACTACTTTTCTTGAGAATAAGCTCCTTA
Found at i:74232045 original size:20 final size:20
Alignment explanation
Indices: 74232012--74232063 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
74232002 CGGGTAGGGG
*
74232012 ACACGGGAGTGTCCCAAAGC
1 ACACGGGCGTGTCCCAAAGC
*
74232032 ACATGGGCGTGTCCCAAAGC
1 ACACGGGCGTGTCCCAAAGC
74232052 ACACGGGCGTGT
1 ACACGGGCGTGT
74232064 GCATTGCCTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.25, C:0.29, G:0.33, T:0.13
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAAGC
Found at i:74242841 original size:33 final size:33
Alignment explanation
Indices: 74242799--74242865 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
74242789 TTGTGTTTTC
74242799 GAAAATAGATTTGAGATCAGGCTATTATCAGTT
1 GAAAATAGATTTGAGATCAGGCTATTATCAGTT
*
74242832 GAAAATAGATTTGAGGTCAGGCTATTATCAGTT
1 GAAAATAGATTTGAGATCAGGCTATTATCAGTT
74242865 G
1 G
74242866 CGAGTAAAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.33
Consensus pattern (33 bp):
GAAAATAGATTTGAGATCAGGCTATTATCAGTT
Found at i:74264848 original size:43 final size:42
Alignment explanation
Indices: 74264713--74264861 Score: 113
Period size: 43 Copynumber: 3.5 Consensus size: 42
74264703 TGTGTTTTTG
* * * *
74264713 TGTAAGGCCACGTCTGGGACATTGGCATCGGCT-TATGATTTACA
1 TGTAAGACCATGTCTGGGACA-TGGCATC-GATATTTGA-TTACA
* ** * * *
74264757 TGTAAGACAATGTCTGGGACATCAACATC-TTATTTGATTTCG
1 TGTAAGACCATGTCTGGGACAT-GGCATCGATATTTGATTACA
* *
74264799 TATAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACA-TGGCATCGATATTTGATTACA
* *
74264842 TGTAAGACCACGTTTGGGAC
1 TGTAAGACCATGTCTGGGAC
74264862 GTTGGCATTG
Statistics
Matches: 80, Mismatches: 21, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
42 26 0.32
43 32 0.40
44 22 0.28
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATGGCATCGATATTTGATTACA
Found at i:74269175 original size:18 final size:17
Alignment explanation
Indices: 74269147--74269180 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
74269137 TTAATCGCTT
74269147 TAATATTAAATTTAATC
1 TAATATTAAATTTAATC
74269164 TAATATTTAAATTTAAT
1 TAATA-TTAAATTTAAT
74269181 ATTAAATCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
TAATATTAAATTTAATC
Found at i:74270352 original size:86 final size:86
Alignment explanation
Indices: 74270257--74270432 Score: 352
Period size: 86 Copynumber: 2.0 Consensus size: 86
74270247 TTATCTCATT
74270257 GTCACCATTGTGTTCTTAATGATTAATATGAGATCTGTCAACAAATGACTGCGATAAATTGCTCA
1 GTCACCATTGTGTTCTTAATGATTAATATGAGATCTGTCAACAAATGACTGCGATAAATTGCTCA
74270322 TTCAAGAATAAGCAACCCTTG
66 TTCAAGAATAAGCAACCCTTG
74270343 GTCACCATTGTGTTCTTAATGATTAATATGAGATCTGTCAACAAATGACTGCGATAAATTGCTCA
1 GTCACCATTGTGTTCTTAATGATTAATATGAGATCTGTCAACAAATGACTGCGATAAATTGCTCA
74270408 TTCAAGAATAAGCAACCCTTG
66 TTCAAGAATAAGCAACCCTTG
74270429 GTCA
1 GTCA
74270433 TGTTCCATAT
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 90 1.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (86 bp):
GTCACCATTGTGTTCTTAATGATTAATATGAGATCTGTCAACAAATGACTGCGATAAATTGCTCA
TTCAAGAATAAGCAACCCTTG
Found at i:74274803 original size:11 final size:10
Alignment explanation
Indices: 74274782--74274812 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
74274772 ATTATCATGC
74274782 AAAATATATT
1 AAAATATATT
74274792 AAAATAATATT
1 AAAAT-ATATT
74274803 AAAATATATT
1 AAAATATATT
74274813 TTTGGACTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
AAAATATATT
Found at i:74278315 original size:12 final size:12
Alignment explanation
Indices: 74278298--74278333 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
74278288 AAATGATCCA
74278298 TAAATATTTTAT
1 TAAATATTTTAT
74278310 TAAATATTTTAT
1 TAAATATTTTAT
74278322 TAAATATTTTAT
1 TAAATATTTTAT
74278334 ATATGGGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TAAATATTTTAT
Found at i:74280422 original size:29 final size:29
Alignment explanation
Indices: 74280386--74280515 Score: 188
Period size: 29 Copynumber: 4.5 Consensus size: 29
74280376 TTTTTGTATC
* *
74280386 GAAGCCTTTGTCGCTATCTTTGTTAAAAG
1 GAAGCCTTTGTGGCTATCTCTGTTAAAAG
* *
74280415 GAAGCCTTTATGGCTATCTTTGTTAAAAG
1 GAAGCCTTTGTGGCTATCTCTGTTAAAAG
* * *
74280444 AAAGCCTTTGTGTCGATCTCTGTTAAAAG
1 GAAGCCTTTGTGGCTATCTCTGTTAAAAG
*
74280473 GAAGCCTTTATGGCTATCTCTGTTAAAAG
1 GAAGCCTTTGTGGCTATCTCTGTTAAAAG
74280502 GAAGCCTTTGTGGC
1 GAAGCCTTTGTGGC
74280516 GATTGTAAAC
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.35
Consensus pattern (29 bp):
GAAGCCTTTGTGGCTATCTCTGTTAAAAG
Done.