Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 219 of 373
Found at i:74607200 original size:27 final size:28
Alignment explanation
Indices: 74607168--74607246 Score: 74
Period size: 27 Copynumber: 2.8 Consensus size: 28
74607158 TTCTAAAAAG
*
74607168 TAATTAAATTTGTATTATTTTA-TTATT
1 TAATTAAATTTGTATTATTTTATTTATA
*
74607195 TTATTAAATCTT-TCATT-TTTTATTTATA
1 TAATTAAAT-TTGT-ATTATTTTATTTATA
74607223 TAATTAAAATTTTGTATTAATTTT
1 TAATT-AAA-TTTGTATT-ATTTT
74607247 TATAATTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
27 14 0.34
28 13 0.32
29 8 0.20
30 2 0.05
31 4 0.10
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (28 bp):
TAATTAAATTTGTATTATTTTATTTATA
Found at i:74607230 original size:28 final size:27
Alignment explanation
Indices: 74607168--74607250 Score: 73
Period size: 28 Copynumber: 3.0 Consensus size: 27
74607158 TTCTAAAAAG
*
74607168 TAATTAAATTTGTATTATTTTATTATT
1 TAATTAAATTTGTATTATTTTATTATA
*
74607195 TTATTAAATCTT-TCATT-TTTTATTTATA
1 TAATTAAAT-TTGT-ATTATTTTA-TTATA
*
74607223 TAATTAAAATTTTGTATTAATTT-TTATA
1 TAATT-AAA-TTTGTATTATTTTATTATA
74607251 ATTAAACTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
27 14 0.31
28 18 0.40
29 8 0.18
30 5 0.11
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (27 bp):
TAATTAAATTTGTATTATTTTATTATA
Found at i:74608819 original size:22 final size:21
Alignment explanation
Indices: 74608794--74608841 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
74608784 GATTACTCTT
74608794 TAAATATTAAACTTTTAAAAAA
1 TAAA-ATTAAACTTTTAAAAAA
* ** *
74608816 TAAAAATAATTTTTTAAAATA
1 TAAAATTAAACTTTTAAAAAA
74608837 TAAAA
1 TAAAA
74608842 ATTATAAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
TAAAATTAAACTTTTAAAAAA
Found at i:74609030 original size:31 final size:31
Alignment explanation
Indices: 74608993--74609055 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
74608983 ATTTAACTAA
*
74608993 ATTTTTTATTTTTTATTT-TCAATTTATATATT
1 ATTTTTTA-TTTTTATTTCTC-ATATATATATT
74609025 ATTTTTTATTTTTATTTCTCATATATATATT
1 ATTTTTTATTTTTATTTCTCATATATATATT
74609056 CCTTTTTTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 19 0.66
32 10 0.34
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (31 bp):
ATTTTTTATTTTTATTTCTCATATATATATT
Found at i:74609062 original size:31 final size:32
Alignment explanation
Indices: 74608995--74609062 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 32
74608985 TTAACTAAAT
* *
74608995 TTTTTATTTTTTATTTTCAATTTATATATTAT
1 TTTTTATTTTTTATTTTCAATATATATATTAC
*
74609027 TTTTTA-TTTTTATTTCTC-ATATATATATTCC
1 TTTTTATTTTTTATTT-TCAATATATATATTAC
74609058 TTTTT
1 TTTTT
74609063 TGAAGTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 24 0.75
32 8 0.25
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (32 bp):
TTTTTATTTTTTATTTTCAATATATATATTAC
Found at i:74609117 original size:26 final size:28
Alignment explanation
Indices: 74609074--74609125 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 28
74609064 GAAGTTTTAT
74609074 AATTTATATATTTCTTATTCTTTTAACA
1 AATTTATATATTTCTTATTCTTTTAACA
* *
74609102 AATTT-TAT-TTTTTTATTTTTTTAA
1 AATTTATATATTTCTTATTCTTTTAA
74609126 GAATGGTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 14 0.64
27 3 0.14
28 5 0.23
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (28 bp):
AATTTATATATTTCTTATTCTTTTAACA
Found at i:74610172 original size:6 final size:6
Alignment explanation
Indices: 74610161--74610207 Score: 94
Period size: 6 Copynumber: 7.8 Consensus size: 6
74610151 TCCTCAAATA
74610161 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATA
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATA
74610208 CATACATTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (6 bp):
GTATAT
Found at i:74612094 original size:6 final size:6
Alignment explanation
Indices: 74612083--74612115 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
74612073 TCTATCCCCA
74612083 GCATGG GCATGG GCATGG GCATGG GCATGG GCA
1 GCATGG GCATGG GCATGG GCATGG GCATGG GCA
74612116 GAGCAACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.18, G:0.48, T:0.15
Consensus pattern (6 bp):
GCATGG
Found at i:74617152 original size:107 final size:107
Alignment explanation
Indices: 74617030--74617244 Score: 430
Period size: 107 Copynumber: 2.0 Consensus size: 107
74617020 AAAAAATAAT
74617030 ATACAAATTAAATATAATTCTGGTTGAAATAGGTAAAAGTTAAGGGTAGAAATATTTTGAGGGTT
1 ATACAAATTAAATATAATTCTGGTTGAAATAGGTAAAAGTTAAGGGTAGAAATATTTTGAGGGTT
74617095 TATGTTGCAATTTGCAAATCTAACTCTTTGCAATTTTTTTAA
66 TATGTTGCAATTTGCAAATCTAACTCTTTGCAATTTTTTTAA
74617137 ATACAAATTAAATATAATTCTGGTTGAAATAGGTAAAAGTTAAGGGTAGAAATATTTTGAGGGTT
1 ATACAAATTAAATATAATTCTGGTTGAAATAGGTAAAAGTTAAGGGTAGAAATATTTTGAGGGTT
74617202 TATGTTGCAATTTGCAAATCTAACTCTTTGCAATTTTTTTAA
66 TATGTTGCAATTTGCAAATCTAACTCTTTGCAATTTTTTTAA
74617244 A
1 A
74617245 AAAATTGTAT
Statistics
Matches: 108, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 108 1.00
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (107 bp):
ATACAAATTAAATATAATTCTGGTTGAAATAGGTAAAAGTTAAGGGTAGAAATATTTTGAGGGTT
TATGTTGCAATTTGCAAATCTAACTCTTTGCAATTTTTTTAA
Found at i:74617300 original size:19 final size:20
Alignment explanation
Indices: 74617276--74617314 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
74617266 AAATGCTTTC
*
74617276 AAATA-TATATTTTTAATAA
1 AAATATTATACTTTTAATAA
74617295 AAATATTATACTTTTAATAA
1 AAATATTATACTTTTAATAA
74617315 TTTTATACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (20 bp):
AAATATTATACTTTTAATAA
Found at i:74621928 original size:46 final size:46
Alignment explanation
Indices: 74621868--74622131 Score: 170
Period size: 46 Copynumber: 5.6 Consensus size: 46
74621858 TCACTTGTGT
*
74621868 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTACGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACGA
* * * *
74621914 GAGCCAATGTAAGACCATGCCTGGGACATGGCAT---CAACATTGA-GA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT-ACGA
* * *
74621959 TGAGTGCTAGTATAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGTA
1 -GA--GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTACG-A
* *
74622009 -AGCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-TATGA-GA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACGA
* * * *
74622051 TGTG-TCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACAAATATACTA
1 -GAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACAT-TACGA
* * *
74622102 AAACTTGTGTAAGATCATGTCTGGGACATG
1 GAGCTAGTGTAAGA-CATGTCTGGGACATG
74622132 ACGTCGATGT
Statistics
Matches: 170, Mismatches: 24, Indels: 45
0.71 0.10 0.19
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 12 0.07
45 23 0.14
46 57 0.34
47 25 0.15
48 16 0.09
49 6 0.04
50 25 0.15
51 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACGA
Found at i:74624297 original size:20 final size:20
Alignment explanation
Indices: 74624256--74624297 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
74624246 AGAACATGTA
* *
74624256 TTCATAAAATTTTATAATTT
1 TTCATAAAATTTTACAACTT
*
74624276 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
74624296 TT
1 TT
74624298 TAGTTTAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:74628954 original size:23 final size:23
Alignment explanation
Indices: 74628927--74628973 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
74628917 TCATTTTCAG
74628927 ATCCCTATACGAGCGTGAATGTT
1 ATCCCTATACGAGCGTGAATGTT
74628950 ATCCCTATACGAGCGTGAATGTT
1 ATCCCTATACGAGCGTGAATGTT
74628973 A
1 A
74628974 ACTTTTGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
ATCCCTATACGAGCGTGAATGTT
Found at i:74635105 original size:27 final size:27
Alignment explanation
Indices: 74635075--74635252 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
74635065 ATATCGAGTC
* * * *
74635075 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
74635102 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
74635129 CGCACACTTAGTGCTTCATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
74635157 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
74635184 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
74635211 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
74635238 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74635253 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 107 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:74635214 original size:82 final size:81
Alignment explanation
Indices: 74635096--74635251 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
74635086 TGCTATATAA
**
74635096 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTTCATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
74635161 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
74635178 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
74635242 CACTTAGTGC
65 CACTTAGTGC
74635252 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:74646768 original size:42 final size:41
Alignment explanation
Indices: 74646706--74646827 Score: 127
Period size: 43 Copynumber: 2.9 Consensus size: 41
74646696 TAAGGTTAGT
* * * *
74646706 TGAGATTACGTGTAAAACCATATTTGGGATATGGCATCGATG
1 TGAGATT-CGTGTAAGACCATATCTGGGATATGGCATCAATA
* *
74646748 TGAGACTTCGTGTAAGACCATAGCTGGGCTATTGGCATCAATA
1 TGAGA-TTCGTGTAAGACCATATCTGGGATA-TGGCATCAATA
* * *
74646791 TGAGATCCAGTGTAAGACCATATCTGGAATCTGGCAT
1 TGAGATTC-GTGTAAGACCATATCTGGGATATGGCAT
74646828 TGGTATGGTA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 32 0.48
43 34 0.52
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (41 bp):
TGAGATTCGTGTAAGACCATATCTGGGATATGGCATCAATA
Found at i:74657868 original size:45 final size:45
Alignment explanation
Indices: 74657801--74657891 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
74657791 GCATAGGAGG
74657801 TCGGTCCGACAGAGGCTAAGCGGTGACCACTAGTATGGAAACCGT
1 TCGGTCCGACAGAGGCTAAGCGGTGACCACTAGTATGGAAACCGT
* * * *
74657846 TCGGTGCGACAGAGTCTCAGCGGTGACCACTATTATGGAAACCGT
1 TCGGTCCGACAGAGGCTAAGCGGTGACCACTAGTATGGAAACCGT
74657891 T
1 T
74657892 TTTAGTTAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.25, C:0.24, G:0.30, T:0.21
Consensus pattern (45 bp):
TCGGTCCGACAGAGGCTAAGCGGTGACCACTAGTATGGAAACCGT
Found at i:74659558 original size:77 final size:77
Alignment explanation
Indices: 74659467--74659609 Score: 187
Period size: 77 Copynumber: 1.9 Consensus size: 77
74659457 AACCATTGCT
* * * * *
74659467 AAATAATGATTCGATGCTACTTACTCAAGTTGCCGAGAATCCACAACTTATGTTAGATCTTAGCC
1 AAATAATAATTCGATGCTACTCACTCAAGCTACCAAGAATCCACAACTTATGTTAGATCTTAGCC
74659532 ACAGTGGATCGC
66 ACAGTGGATCGC
* * * * * *
74659544 AAATAATAATTCGATGTTTCTCACTCAAGCTATCAAGAATTCACAATTTATGTTGGATCTTAGCC
1 AAATAATAATTCGATGCTACTCACTCAAGCTACCAAGAATCCACAACTTATGTTAGATCTTAGCC
74659609 A
66 A
74659610 TCAAATAAAT
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
77 55 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.31
Consensus pattern (77 bp):
AAATAATAATTCGATGCTACTCACTCAAGCTACCAAGAATCCACAACTTATGTTAGATCTTAGCC
ACAGTGGATCGC
Found at i:74660635 original size:21 final size:21
Alignment explanation
Indices: 74660611--74660650 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
74660601 TGTGCATTTT
*
74660611 CCTTTCGTTTATGTTTTAATA
1 CCTTTCATTTATGTTTTAATA
* *
74660632 CCTTTTATTTATTTTTTAA
1 CCTTTCATTTATGTTTTAA
74660651 AATTAACATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.12, G:0.05, T:0.62
Consensus pattern (21 bp):
CCTTTCATTTATGTTTTAATA
Found at i:74662356 original size:36 final size:36
Alignment explanation
Indices: 74662307--74662378 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
74662297 TGAAAACTTA
* *
74662307 AAAATTAGTTCAATTAAGTATTAATGTTAAATCTTG
1 AAAATTAGCTCAATTAAGTATCAATGTTAAATCTTG
74662343 AAAATTAGCTCAATTAAGTATCAATGTTAAATCTTG
1 AAAATTAGCTCAATTAAGTATCAATGTTAAATCTTG
74662379 CCCGTTGACC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (36 bp):
AAAATTAGCTCAATTAAGTATCAATGTTAAATCTTG
Found at i:74663025 original size:3 final size:3
Alignment explanation
Indices: 74663012--74663049 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
74663002 TTTTCTCTTA
* *
74663012 TCC TTC TCC TCC TCC TCC TCC TCC TTC TCC TCC TCC TC
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
74663050 TTCTTCTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (3 bp):
TCC
Found at i:74667807 original size:62 final size:62
Alignment explanation
Indices: 74667739--74667862 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
74667729 ATGCAAAGTT
*
74667739 TTCCTACCAAGATGCTACCTATCAGCACAGAAATATGAAAACTACTCGCATATCAGTTATGA
1 TTCCTACCAAGATGCTACCTATCAACACAGAAATATGAAAACTACTCGCATATCAGTTATGA
74667801 TTCCTACCAAGATGCTACCTATCAACACAGAAATATGAAAACTACTCGCATATCAGTTATGA
1 TTCCTACCAAGATGCTACCTATCAACACAGAAATATGAAAACTACTCGCATATCAGTTATGA
74667863 AAGTAAGGAC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (62 bp):
TTCCTACCAAGATGCTACCTATCAACACAGAAATATGAAAACTACTCGCATATCAGTTATGA
Found at i:74672918 original size:31 final size:31
Alignment explanation
Indices: 74672880--74672948 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
74672870 TTTTTATTGA
74672880 TATTCTTTGCAGCCTGATCAATACACAGTCT
1 TATTCTTTGCAGCCTGATCAATACACAGTCT
74672911 TATTCTTTGCAGCCTGATCAATACACAGTCT
1 TATTCTTTGCAGCCTGATCAATACACAGTCT
74672942 TACTTCT
1 TA-TTCT
74672949 CCTCGGTAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 33 0.89
32 4 0.11
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.38
Consensus pattern (31 bp):
TATTCTTTGCAGCCTGATCAATACACAGTCT
Found at i:74686463 original size:18 final size:18
Alignment explanation
Indices: 74686440--74686475 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
74686430 GTGAGTCCCG
74686440 TAGTGAACCAGATTTTCT
1 TAGTGAACCAGATTTTCT
74686458 TAGTGAACCAGATTTTCT
1 TAGTGAACCAGATTTTCT
74686476 AAGTCACTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.39
Consensus pattern (18 bp):
TAGTGAACCAGATTTTCT
Found at i:74691100 original size:18 final size:18
Alignment explanation
Indices: 74691077--74691113 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
74691067 AGTAGCATAC
74691077 TTGTGTTAGAATAACCAT
1 TTGTGTTAGAATAACCAT
*
74691095 TTGTGTTAGAATAATCAT
1 TTGTGTTAGAATAACCAT
74691113 T
1 T
74691114 CTTCCTAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.43
Consensus pattern (18 bp):
TTGTGTTAGAATAACCAT
Found at i:74691416 original size:21 final size:21
Alignment explanation
Indices: 74691370--74691427 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 21
74691360 AGCACACAAG
74691370 TATTTTTTCAATTAATTAAAA
1 TATTTTTTCAATTAATTAAAA
* * *
74691391 CATTTTTT-AGATTAATTCATA
1 TATTTTTTCA-ATTAATTAAAA
*
74691412 TATTTCTTCACATTAA
1 TATTTTTTCA-ATTAA
74691428 ACATGCATAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
20 1 0.03
21 22 0.76
22 6 0.21
ACGTcount: A:0.36, C:0.10, G:0.02, T:0.52
Consensus pattern (21 bp):
TATTTTTTCAATTAATTAAAA
Found at i:74699995 original size:117 final size:117
Alignment explanation
Indices: 74699789--74700033 Score: 481
Period size: 117 Copynumber: 2.1 Consensus size: 117
74699779 ATGAAACCAT
74699789 CTCTGGACATAGAAGGTTGTTCACATACTAAAAACTGATTCTAATTCTGAAAGGGTTGGATTGAT
1 CTCTGGACATAGAAGGTTGTTCACATACTAAAAACTGATTCTAATTCTGAAAGGGTTGGATTGAT
74699854 TAGATTAAAATTAAGTGAAGTGAGCAAGTATTCGATTGACACTTGTAGTCGA
66 TAGATTAAAATTAAGTGAAGTGAGCAAGTATTCGATTGACACTTGTAGTCGA
74699906 CTCTGGACATAGAAGGTTGTTCACATACTAAAAACTGATTCTAATTCTGAAAGGGTTGGATTGAT
1 CTCTGGACATAGAAGGTTGTTCACATACTAAAAACTGATTCTAATTCTGAAAGGGTTGGATTGAT
74699971 TAGATTAAAATTAAGTGAAGTGAGCAAGTATTCGATTGACACTTGTAGTCGA
66 TAGATTAAAATTAAGTGAAGTGAGCAAGTATTCGATTGACACTTGTAGTCGA
*
74700023 CTCTAGACATA
1 CTCTGGACATA
74700034 AAGTCATGAT
Statistics
Matches: 127, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
117 127 1.00
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.31
Consensus pattern (117 bp):
CTCTGGACATAGAAGGTTGTTCACATACTAAAAACTGATTCTAATTCTGAAAGGGTTGGATTGAT
TAGATTAAAATTAAGTGAAGTGAGCAAGTATTCGATTGACACTTGTAGTCGA
Found at i:74707365 original size:32 final size:32
Alignment explanation
Indices: 74707275--74707433 Score: 149
Period size: 32 Copynumber: 4.9 Consensus size: 32
74707265 TTTTTGAGTG
* * **
74707275 GTACACACAAAGTATACCTTTCCTTTTCATA-T
1 GTACACACAAAGTGTACATAACCTTTTCA-AGT
* * * **
74707307 GGTATACACAAAGTATACCTTTCCTTTTCAAGT
1 -GTACACACAAAGTGTACATAACCTTTTCAAGT
* *
74707340 GTACACAGAAAGTGTACATAGCCTTTTCAAGT
1 GTACACACAAAGTGTACATAACCTTTTCAAGT
*
74707372 GTACACACAAAGTGTACATAACCTTTTCATGT
1 GTACACACAAAGTGTACATAACCTTTTCAAGT
* * *
74707404 GGTATACACAAAGTATACCTAACCTTTTCA
1 -GTACACACAAAGTGTACATAACCTTTTCA
74707434 CATTCAATAG
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
32 56 0.50
33 55 0.50
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (32 bp):
GTACACACAAAGTGTACATAACCTTTTCAAGT
Found at i:74707432 original size:33 final size:33
Alignment explanation
Indices: 74707271--74707433 Score: 179
Period size: 33 Copynumber: 5.0 Consensus size: 33
74707261 TTTCTTTTTG
**
74707271 AGTGGTACACACAAAGTATACCTTTCCTTTTCA
1 AGTGGTACACACAAAGTATACCTAACCTTTTCA
* **
74707304 TA-TGGTATACACAAAGTATACCTTTCCTTTTCA
1 -AGTGGTACACACAAAGTATACCTAACCTTTTCA
* * * *
74707337 AGT-GTACACAGAAAGTGTACATAGCCTTTTCA
1 AGTGGTACACACAAAGTATACCTAACCTTTTCA
* *
74707369 AGT-GTACACACAAAGTGTACATAACCTTTTCA
1 AGTGGTACACACAAAGTATACCTAACCTTTTCA
* *
74707401 TGTGGTATACACAAAGTATACCTAACCTTTTCA
1 AGTGGTACACACAAAGTATACCTAACCTTTTCA
74707434 CATTCAATAG
Statistics
Matches: 114, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
32 56 0.49
33 57 0.50
34 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (33 bp):
AGTGGTACACACAAAGTATACCTAACCTTTTCA
Found at i:74707472 original size:29 final size:29
Alignment explanation
Indices: 74707426--74707553 Score: 202
Period size: 29 Copynumber: 4.4 Consensus size: 29
74707416 GTATACCTAA
* **
74707426 CCTTTTCACATTCAATAGCAAAAGCTATC
1 CCTTTTCACATTCGATAGCCGAAGCTATC
*
74707455 CCTTTCCACATTCGATAGCCGAAGCTATCC
1 CCTTTTCACATTCGATAGCCGAAGCTAT-C
*
74707485 CCTTTTTACATTCGATAGCCGAAGCTATC
1 CCTTTTCACATTCGATAGCCGAAGCTATC
74707514 CCTTTTCACATTCGATAGCCGAAGCTATC
1 CCTTTTCACATTCGATAGCCGAAGCTATC
74707543 CCTTTTCACAT
1 CCTTTTCACAT
74707554 GGTACACACA
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
29 64 0.70
30 27 0.30
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (29 bp):
CCTTTTCACATTCGATAGCCGAAGCTATC
Found at i:74707503 original size:59 final size:58
Alignment explanation
Indices: 74707426--74707553 Score: 202
Period size: 59 Copynumber: 2.2 Consensus size: 58
74707416 GTATACCTAA
74707426 CCTTTTCACATTCAATAGCAAAAGCTATCCCTTTCCACATTCGATAGCCGAAGCTATCC
1 CCTTTTCACATTCAATAGCAAAAGCTATCCCTTTCCACATTCGATAGCCGAAGCTAT-C
* * ** *
74707485 CCTTTTTACATTCGATAGCCGAAGCTATCCCTTTTCACATTCGATAGCCGAAGCTATC
1 CCTTTTCACATTCAATAGCAAAAGCTATCCCTTTCCACATTCGATAGCCGAAGCTATC
74707543 CCTTTTCACAT
1 CCTTTTCACAT
74707554 GGTACACACA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
58 11 0.17
59 52 0.83
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (58 bp):
CCTTTTCACATTCAATAGCAAAAGCTATCCCTTTCCACATTCGATAGCCGAAGCTATC
Found at i:74712667 original size:13 final size:13
Alignment explanation
Indices: 74712651--74712683 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
74712641 TTTAATTAAA
*
74712651 TTAGTTAATTAGT
1 TTAGATAATTAGT
74712664 TTAGATAATTAGT
1 TTAGATAATTAGT
74712677 TTA-ATAA
1 TTAGATAA
74712684 ACAAACCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:74732755 original size:23 final size:23
Alignment explanation
Indices: 74732729--74732776 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
74732719 TATTTGTATG
*
74732729 ATTTATTAATGG-ATGATAATTTC
1 ATTTATTAATGGCATGA-AATATC
*
74732752 ATTTATTATTGGCATGAAATATC
1 ATTTATTAATGGCATGAAATATC
74732775 AT
1 AT
74732777 AGAAGTGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.46
Consensus pattern (23 bp):
ATTTATTAATGGCATGAAATATC
Found at i:74734597 original size:39 final size:39
Alignment explanation
Indices: 74734537--74734712 Score: 307
Period size: 39 Copynumber: 4.5 Consensus size: 39
74734527 ATTTAAGCCT
*
74734537 GGATATAATTCCAGCTCATAGCCTGCGGACCTGAAGTCC
1 GGATATAATTCCAGCACATAGCCTGCGGACCTGAAGTCC
* *
74734576 GGATAAAATTCCAGCATATAGCCTGCGGACCTGAAGTCC
1 GGATATAATTCCAGCACATAGCCTGCGGACCTGAAGTCC
74734615 GGATATAATTCCAGCACATAGCCTGCGGACCTGAAGTCC
1 GGATATAATTCCAGCACATAGCCTGCGGACCTGAAGTCC
*
74734654 AGATATAATTCCAGCACATAGCCTGCGGACCTGAAGTCC
1 GGATATAATTCCAGCACATAGCCTGCGGACCTGAAGTCC
*
74734693 GGATATAATTTCAGCACATA
1 GGATATAATTCCAGCACATA
74734713 CAATTATGAT
Statistics
Matches: 129, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 129 1.00
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (39 bp):
GGATATAATTCCAGCACATAGCCTGCGGACCTGAAGTCC
Found at i:74748015 original size:68 final size:68
Alignment explanation
Indices: 74747916--74748042 Score: 148
Period size: 68 Copynumber: 1.9 Consensus size: 68
74747906 TGGATTATAT
* * *
74747916 TGTGTAAAACCATAGCTTGACTATGGCAACATAAAGAGTCCACTAGGACATTAAACATGGGGCAA
1 TGTGTAAAACCATAGCTAGACCATGGAAACATAAAGAGTCCACTAGGACATTAAACATGGGGCAA
74747981 TGA
66 TGA
* ** *** *
74747984 TGTGTAAGACCATAGCTCAG-CCATGGAAACATTGAGAGTCTGTTGGGACATTAAACATG
1 TGTGTAAAACCATAGCT-AGACCATGGAAACATAAAGAGTCCACTAGGACATTAAACATG
74748043 AGGTGGCCAC
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
68 47 0.98
69 1 0.02
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (68 bp):
TGTGTAAAACCATAGCTAGACCATGGAAACATAAAGAGTCCACTAGGACATTAAACATGGGGCAA
TGA
Found at i:74752901 original size:45 final size:45
Alignment explanation
Indices: 74752829--74752919 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
74752819 CTAAAACATG
* * *
74752829 TGTCACATACATCATGAATTCAGACCACAACTCAATGAGCTCAGA
1 TGTCACATACATCATGAACTCAAACCACAACTCAATCAGCTCAGA
* *
74752874 TGTCACATATATCATGAACTCAAACCACAACTCAATCAGTTCAGA
1 TGTCACATACATCATGAACTCAAACCACAACTCAATCAGCTCAGA
74752919 T
1 T
74752920 CACATAATTC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.38, C:0.26, G:0.11, T:0.24
Consensus pattern (45 bp):
TGTCACATACATCATGAACTCAAACCACAACTCAATCAGCTCAGA
Found at i:74754337 original size:44 final size:44
Alignment explanation
Indices: 74754288--74754376 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
74754278 TCCTTTAACG
* *
74754288 ATTACTTCCTCAATTTTCATTCTTATACTCACGTTCATTTCCAT
1 ATTACTTCCTCAATTGTCATTCTTATACTCACGCTCATTTCCAT
74754332 ATTACTTCCTCAATTGTCATTCTTATACTCACGCTCATTTCCAT
1 ATTACTTCCTCAATTGTCATTCTTATACTCACGCTCATTTCCAT
74754376 A
1 A
74754377 CCTTACCCTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.24, C:0.28, G:0.03, T:0.45
Consensus pattern (44 bp):
ATTACTTCCTCAATTGTCATTCTTATACTCACGCTCATTTCCAT
Found at i:74755111 original size:25 final size:25
Alignment explanation
Indices: 74755039--74755115 Score: 75
Period size: 26 Copynumber: 3.0 Consensus size: 25
74755029 TGCCTCGAAG
* *
74755039 GCTTCCATTCTAGATATCTCACAAAG
1 GCTTCCATTTTAGATATC-CACAAAA
* * *
74755065 GTTTCCTTTTTACATACTCCACAAAA
1 GCTTCCATTTTAGATA-TCCACAAAA
74755091 GCTTCC-TTTTAGATATGCCACAAAA
1 GCTTCCATTTTAGATAT-CCACAAAA
74755116 ACTTTCTTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
24 1 0.02
25 16 0.38
26 23 0.55
27 2 0.05
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (25 bp):
GCTTCCATTTTAGATATCCACAAAA
Found at i:74755126 original size:26 final size:25
Alignment explanation
Indices: 74755070--74755126 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
74755060 CAAAGGTTTC
*
74755070 CTTTTTACATACTCCACAAAAGCTT
1 CTTTTTACATACTCCACAAAAACTT
* *
74755095 CCTTTTAGATA-TGCCACAAAAACTTT
1 CTTTTTACATACT-CCACAAAAAC-TT
74755121 CTTTTT
1 CTTTTT
74755127 CTGGCATGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 1 0.04
25 18 0.69
26 7 0.27
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.40
Consensus pattern (25 bp):
CTTTTTACATACTCCACAAAAACTT
Found at i:74757605 original size:17 final size:17
Alignment explanation
Indices: 74757583--74757621 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
74757573 AAAATGGGCT
**
74757583 CACACGCCCATGTGGCC
1 CACACGCCCACCTGGCC
*
74757600 CACACGCCTACCTGGCC
1 CACACGCCCACCTGGCC
74757617 CACAC
1 CACAC
74757622 AGCCTAGAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.21, C:0.51, G:0.18, T:0.10
Consensus pattern (17 bp):
CACACGCCCACCTGGCC
Found at i:74757634 original size:29 final size:29
Alignment explanation
Indices: 74757601--74757663 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
74757591 CATGTGGCCC
*
74757601 ACACGCCTACCTGGCCCACAC-AGCCTAGA
1 ACACGCCCACCTGGCCCACACGA-CCTAGA
** *
74757630 ACACGCCCGTCTGGCCCATACGACCTAGA
1 ACACGCCCACCTGGCCCACACGACCTAGA
74757659 ACACG
1 ACACG
74757664 TCTGTGTGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 28 0.97
30 1 0.03
ACGTcount: A:0.27, C:0.43, G:0.19, T:0.11
Consensus pattern (29 bp):
ACACGCCCACCTGGCCCACACGACCTAGA
Found at i:74782313 original size:18 final size:18
Alignment explanation
Indices: 74782292--74782346 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
74782282 TCCTGATCGA
74782292 GAAATAACTGACGATGTT
1 GAAATAACTGACGATGTT
* *
74782310 GAAAGTAA-TG-CGCTGCT
1 GAAA-TAACTGACGATGTT
74782327 --AATAACTGACGATGTT
1 GAAATAACTGACGATGTT
74782343 GAAA
1 GAAA
74782347 GTAATGCACT
Statistics
Matches: 28, Mismatches: 4, Indels: 10
0.67 0.10 0.24
Matches are distributed among these distances:
14 3 0.11
15 4 0.14
16 5 0.18
17 5 0.18
18 8 0.29
19 3 0.11
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (18 bp):
GAAATAACTGACGATGTT
Found at i:74786462 original size:27 final size:27
Alignment explanation
Indices: 74786431--74786608 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
74786421 TAAATTGTAC
74786431 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
74786458 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
74786484 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
74786512 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
74786540 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
74786567 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
74786594 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
74786609 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:74786545 original size:82 final size:81
Alignment explanation
Indices: 74786432--74786587 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
74786422 AAATTGTACA
* *
74786432 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
74786496 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
74786513 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
74786578 TGCGAGTTGA
65 TGCGAATTGA
74786588 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:74786599 original size:82 final size:81
Alignment explanation
Indices: 74786428--74786608 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
74786418 GATTAAATTG
* *
74786428 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
74786493 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
74786509 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
74786573 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
74786591 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
74786609 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:74793948 original size:18 final size:18
Alignment explanation
Indices: 74793906--74793948 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
74793896 GCCCATTCCG
* *
74793906 AAGTATATATATATACAT
1 AAGTATGTATATATACAC
74793924 ATA-TATGTATATATACAC
1 A-AGTATGTATATATACAC
74793942 AAGTATG
1 AAGTATG
74793949 CCCATTCGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (18 bp):
AAGTATGTATATATACAC
Found at i:74794456 original size:27 final size:27
Alignment explanation
Indices: 74794425--74794602 Score: 207
Period size: 27 Copynumber: 6.6 Consensus size: 27
74794415 TAAATTGTAC
74794425 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
74794452 TGCACTAAGTGTGCGAAGTGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
74794478 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
74794506 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
74794534 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
74794561 AGCACTAAGTGTGCGAGTTGA-TCATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
*
74794588 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
74794603 GACTCAATAT
Statistics
Matches: 130, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.01
27 106 0.82
28 23 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:74794593 original size:82 final size:81
Alignment explanation
Indices: 74794422--74794602 Score: 247
Period size: 82 Copynumber: 2.2 Consensus size: 81
74794412 GATTAAATTG
*
74794422 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAGTGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAGTGAATATGATGCACTAA
74794487 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
74794503 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAGTGAATATGAT-GCACT
* *
74794567 AAGTGTGCGAGTTGATCA
64 AAGTGTGCGAATTGACCA
* *
74794585 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
74794603 GACTCAATAT
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
81 18 0.21
82 68 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAGTGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:74819076 original size:22 final size:22
Alignment explanation
Indices: 74819037--74819081 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
74819027 TATGCATTTC
*
74819037 ATGCATTTTCATGCCATTAATA
1 ATGCATTATCATGCCATTAATA
*
74819059 ATGCAATTATCATG-CATTCATA
1 ATGC-ATTATCATGCCATTAATA
74819081 A
1 A
74819082 ATCATACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (22 bp):
ATGCATTATCATGCCATTAATA
Found at i:74841911 original size:43 final size:42
Alignment explanation
Indices: 74841842--74841928 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 42
74841832 TATGTCATTG
*
74841842 ATATGGAAATGGCACAGATGAGAAATGAATATGAGATGAGAAA
1 ATATGGAAATGGCAAAGATGAGAAATGAATATGAGATGA-AAA
* * * *
74841885 ATATTGAAATGGCAAATATGATAAATGATTATGAGATGAAAA
1 ATATGGAAATGGCAAAGATGAGAAATGAATATGAGATGAAAA
74841927 AT
1 AT
74841929 GAAATATGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 5 0.13
43 34 0.87
ACGTcount: A:0.49, C:0.03, G:0.23, T:0.24
Consensus pattern (42 bp):
ATATGGAAATGGCAAAGATGAGAAATGAATATGAGATGAAAA
Found at i:74848541 original size:184 final size:184
Alignment explanation
Indices: 74848232--74848603 Score: 744
Period size: 184 Copynumber: 2.0 Consensus size: 184
74848222 AGACCTCGCC
74848232 CATTGGCAGACATTATTCCCTATTAGGAACCCGCATAAGACGAACACAAGTCATAACTACTCTAT
1 CATTGGCAGACATTATTCCCTATTAGGAACCCGCATAAGACGAACACAAGTCATAACTACTCTAT
74848297 TTGTATGTTGCATTATGGACTACCCCTTTTATGACAATTTCTTGTGCTTTTTACACTTTCATGCA
66 TTGTATGTTGCATTATGGACTACCCCTTTTATGACAATTTCTTGTGCTTTTTACACTTTCATGCA
74848362 ATGTCCACACATTATTTAACATGATATACACCATTTTTATTAGTATACCCCGTT
131 ATGTCCACACATTATTTAACATGATATACACCATTTTTATTAGTATACCCCGTT
74848416 CATTGGCAGACATTATTCCCTATTAGGAACCCGCATAAGACGAACACAAGTCATAACTACTCTAT
1 CATTGGCAGACATTATTCCCTATTAGGAACCCGCATAAGACGAACACAAGTCATAACTACTCTAT
74848481 TTGTATGTTGCATTATGGACTACCCCTTTTATGACAATTTCTTGTGCTTTTTACACTTTCATGCA
66 TTGTATGTTGCATTATGGACTACCCCTTTTATGACAATTTCTTGTGCTTTTTACACTTTCATGCA
74848546 ATGTCCACACATTATTTAACATGATATACACCATTTTTATTAGTATACCCCGTT
131 ATGTCCACACATTATTTAACATGATATACACCATTTTTATTAGTATACCCCGTT
74848600 CATT
1 CATT
74848604 TTTATAAATG
Statistics
Matches: 188, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
184 188 1.00
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.37
Consensus pattern (184 bp):
CATTGGCAGACATTATTCCCTATTAGGAACCCGCATAAGACGAACACAAGTCATAACTACTCTAT
TTGTATGTTGCATTATGGACTACCCCTTTTATGACAATTTCTTGTGCTTTTTACACTTTCATGCA
ATGTCCACACATTATTTAACATGATATACACCATTTTTATTAGTATACCCCGTT
Found at i:74850802 original size:39 final size:39
Alignment explanation
Indices: 74850731--74850810 Score: 108
Period size: 39 Copynumber: 2.1 Consensus size: 39
74850721 AACCGGTGGC
* *
74850731 GGTAGTAGTAGATGATGATGCAGAGGCCGTTCCCGAGCA
1 GGTAGTAGCAGATGATGATGCAGAGGCCGTTCCCGAACA
* *
74850770 GGTAGTAGCAGATGATGATGTAGCA-GCGGTTCCCGAACA
1 GGTAGTAGCAGATGATGATGCAG-AGGCCGTTCCCGAACA
74850809 GG
1 GG
74850811 AGGATGATAG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
39 35 0.97
40 1 0.03
ACGTcount: A:0.26, C:0.17, G:0.36, T:0.20
Consensus pattern (39 bp):
GGTAGTAGCAGATGATGATGCAGAGGCCGTTCCCGAACA
Found at i:74850990 original size:55 final size:55
Alignment explanation
Indices: 74850903--74851013 Score: 195
Period size: 55 Copynumber: 2.0 Consensus size: 55
74850893 ATTTTTCATA
* *
74850903 TATTCTACTTAGATGCTTGGCTGCAAGTCATTATATTAAGGGGCTTTTAAAACTT
1 TATTCTACTTAGATGCTCGGCTGCAAGACATTATATTAAGGGGCTTTTAAAACTT
*
74850958 TATTCTACTTAGATGCTCGGCTGCATGACATTATATTAAGGGGCTTTTAAAACTT
1 TATTCTACTTAGATGCTCGGCTGCAAGACATTATATTAAGGGGCTTTTAAAACTT
74851013 T
1 T
74851014 TCTTCTTTTG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (55 bp):
TATTCTACTTAGATGCTCGGCTGCAAGACATTATATTAAGGGGCTTTTAAAACTT
Found at i:74852862 original size:38 final size:38
Alignment explanation
Indices: 74852811--74852885 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
74852801 TTTAATGCAC
74852811 AAAATCAATGCTTTCAATGGCTCAAAATGTCTTCCAAT
1 AAAATCAATGCTTTCAATGGCTCAAAATGTCTTCCAAT
*
74852849 AAAATCAATGCTTTCAATGGCTCCAAATGTCTTCCAA
1 AAAATCAATGCTTTCAATGGCTCAAAATGTCTTCCAA
74852886 GTGATTAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.31
Consensus pattern (38 bp):
AAAATCAATGCTTTCAATGGCTCAAAATGTCTTCCAAT
Found at i:74874878 original size:40 final size:40
Alignment explanation
Indices: 74874823--74875040 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
74874813 CGGATGATAA
* * *
74874823 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
74874863 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
74874903 CTGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
74874943 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
74874983 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
74875023 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74875041 TACCTGGCTT
Statistics
Matches: 159, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 16 0.10
40 143 0.90
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:74878856 original size:57 final size:57
Alignment explanation
Indices: 74878767--74878897 Score: 133
Period size: 57 Copynumber: 2.3 Consensus size: 57
74878757 GTTATGGTTT
* *
74878767 GATTTAGCCTGGA-TGGGTAATCCAGATCAAGCTCTT-TAGAGCATATGTCATAAAAAG
1 GATTTAGCCTGGACT-GGCAATCCAGATCAAGCT-TTATAGAGCATATATCATAAAAAG
* * * ** * *
74878824 GATTTAGCCTGGACTGGCAATCCTGA-CTAAGCTTTATTGAGTATATATTGTAGACAG
1 GATTTAGCCTGGACTGGCAATCCAGATC-AAGCTTTATAGAGCATATATCATAAAAAG
74878881 GATTTAGCCTGGACTGG
1 GATTTAGCCTGGACTGG
74878898 TATCCTGTTG
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
56 3 0.05
57 58 0.94
58 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (57 bp):
GATTTAGCCTGGACTGGCAATCCAGATCAAGCTTTATAGAGCATATATCATAAAAAG
Found at i:74879744 original size:21 final size:21
Alignment explanation
Indices: 74879720--74879765 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
74879710 TATTGGTCAT
74879720 ATTGGCATATAAATGTAAATG
1 ATTGGCATATAAATGTAAATG
** *
74879741 ATTGTTATGTAAATGTAAATG
1 ATTGGCATATAAATGTAAATG
74879762 ATTG
1 ATTG
74879766 TTGTAATCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.02, G:0.20, T:0.39
Consensus pattern (21 bp):
ATTGGCATATAAATGTAAATG
Found at i:74883466 original size:29 final size:29
Alignment explanation
Indices: 74883421--74883705 Score: 312
Period size: 29 Copynumber: 9.8 Consensus size: 29
74883411 GATGCAATCT
74883421 AAGGAAGCCTTTGTGGC-AATCTCTATTA
1 AAGGAAGCCTTTGTGGCTAATCTCTATTA
* * *
74883449 ATTGGAAGCCTTTATGGCT-ATCCCTATTA
1 A-AGGAAGCCTTTGTGGCTAATCTCTATTA
*
74883478 AATGGAAGCCTTTGTGGCT-ATCTCTGTTA
1 AA-GGAAGCCTTTGTGGCTAATCTCTATTA
*
74883507 AATGGAAGCCTTTGTGGCTAATCTCTGTTA
1 AA-GGAAGCCTTTGTGGCTAATCTCTATTA
* *
74883537 AAGGGAAGCCTTTGTGGCTAAACTCTATCA
1 AA-GGAAGCCTTTGTGGCTAATCTCTATTA
* *
74883567 AAGGAAGCCTTTGTGGCTAATCTTTGTTA
1 AAGGAAGCCTTTGTGGCTAATCTCTATTA
*
74883596 AAGGAATCCTTTGTGGCTAATCTCTATTA
1 AAGGAAGCCTTTGTGGCTAATCTCTATTA
* * *
74883625 AAGGAAGCCTTTGTAGG-TAATCTTTGTTC
1 AAGGAAGCCTTTGT-GGCTAATCTCTATTA
* * *
74883654 AAGGAAGCTTTTGTGGC-GATCTTTATTA
1 AAGGAAGCCTTTGTGGCTAATCTCTATTA
*
74883682 AA-GATAGCCTTTATGGCTATATCT
1 AAGGA-AGCCTTTGTGGCTA-ATCT
74883706 GTTAAAAGGA
Statistics
Matches: 219, Mismatches: 29, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
27 2 0.01
28 23 0.11
29 150 0.68
30 44 0.20
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (29 bp):
AAGGAAGCCTTTGTGGCTAATCTCTATTA
Found at i:74883547 original size:88 final size:87
Alignment explanation
Indices: 74883421--74883636 Score: 303
Period size: 88 Copynumber: 2.5 Consensus size: 87
74883411 GATGCAATCT
* * *
74883421 AAGGAAGCCTTTGTGGC-AATCTCTATTAATTGGAAGCCTTTATGGCT-ATCCCTATTAAATGGA
1 AAGGAAGCCTTTGTGGCTAATCTCTATTAA-AGGAAGCCTTTATGGCTAAACCCTATCAAA-GGA
74883484 AGCCTTTGTGGCT-ATCTCTGTTA
64 AGCCTTTGTGGCTAATCTCTGTTA
* * *
74883507 AATGGAAGCCTTTGTGGCTAATCTCTGTTAAAGGGAAGCCTTTGTGGCTAAACTCTATCAAAGGA
1 AA-GGAAGCCTTTGTGGCTAATCTCTATTAAA-GGAAGCCTTTATGGCTAAACCCTATCAAAGGA
*
74883572 AGCCTTTGTGGCTAATCTTTGTTA
64 AGCCTTTGTGGCTAATCTCTGTTA
*
74883596 AAGGAATCCTTTGTGGCTAATCTCTATTAAAGGAAGCCTTT
1 AAGGAAGCCTTTGTGGCTAATCTCTATTAAAGGAAGCCTTT
74883637 GTAGGTAATC
Statistics
Matches: 116, Mismatches: 9, Indels: 9
0.87 0.07 0.07
Matches are distributed among these distances:
86 2 0.02
87 25 0.22
88 69 0.59
89 20 0.17
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.35
Consensus pattern (87 bp):
AAGGAAGCCTTTGTGGCTAATCTCTATTAAAGGAAGCCTTTATGGCTAAACCCTATCAAAGGAAG
CCTTTGTGGCTAATCTCTGTTA
Found at i:74894756 original size:21 final size:21
Alignment explanation
Indices: 74894732--74894773 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
74894722 TCATCAGATC
*
74894732 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
74894753 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
74894774 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:74897047 original size:30 final size:30
Alignment explanation
Indices: 74897002--74897061 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
74896992 ATTTAATACG
* *
74897002 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
* *
74897032 AACTTTTGCATAATTACACTTTTACCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
74897062 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTACCCCTA
Found at i:74899496 original size:27 final size:27
Alignment explanation
Indices: 74899466--74899532 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 27
74899456 AATACCTTCA
* * *
74899466 TAGGGTAGAATGACCGGAATACCCCTG
1 TAGGGTAAAATGAACGGAATACCCCAG
* * *
74899493 TAGGCTAAAATGAATGTAATACCCCAG
1 TAGGGTAAAATGAACGGAATACCCCAG
*
74899520 TAAGGTAAAATGA
1 TAGGGTAAAATGA
74899533 TAGATTTTTT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (27 bp):
TAGGGTAAAATGAACGGAATACCCCAG
Found at i:74902663 original size:17 final size:17
Alignment explanation
Indices: 74902616--74902663 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
74902606 CTATTCCTAA
**
74902616 AAAAATAAAAATTGTCC
1 AAAAATAAAAATAATCC
* **
74902633 AAAATTAATTATAATCC
1 AAAAATAAAAATAATCC
74902650 AAAAATAAAAATAA
1 AAAAATAAAAATAA
74902664 AAAGTTTGGT
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.65, C:0.08, G:0.02, T:0.25
Consensus pattern (17 bp):
AAAAATAAAAATAATCC
Found at i:74903995 original size:11 final size:11
Alignment explanation
Indices: 74903979--74904003 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
74903969 AGTTTAGTGG
74903979 TTTTGAGAGGT
1 TTTTGAGAGGT
74903990 TTTTGAGAGGT
1 TTTTGAGAGGT
74904001 TTT
1 TTT
74904004 AAGGCTAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.52
Consensus pattern (11 bp):
TTTTGAGAGGT
Found at i:74906918 original size:79 final size:81
Alignment explanation
Indices: 74906817--74907001 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
74906807 GCTACTCGTT
* * *
74906817 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
74906880 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
74906897 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
74906961 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
74906977 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74907002 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:74907001 original size:40 final size:40
Alignment explanation
Indices: 74906817--74907001 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
74906807 GCTACTCGTT
* *
74906817 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
74906857 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
74906897 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
74906936 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
74906977 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74907002 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:74908867 original size:28 final size:28
Alignment explanation
Indices: 74908835--74908889 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
74908825 AGCCTGTATG
74908835 GATCAATGATTGGCTAAACATGTTTTCA
1 GATCAATGATTGGCTAAACATGTTTTCA
74908863 GATCAATGATTGGCTAAACATGTTTTC
1 GATCAATGATTGGCTAAACATGTTTTC
74908890 TTCTCCTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (28 bp):
GATCAATGATTGGCTAAACATGTTTTCA
Found at i:74909915 original size:26 final size:28
Alignment explanation
Indices: 74909860--74909916 Score: 66
Period size: 26 Copynumber: 2.1 Consensus size: 28
74909850 AACACGATTG
* *
74909860 AAAAGAACTGAAAAGAAATCTAAACCCT
1 AAAAGAACAGAAAAGAAATCTAAACACT
74909888 AAAAGAA-AGAAAA-AAATCTGAAA-ACT
1 AAAAGAACAGAAAAGAAATCT-AAACACT
74909914 AAA
1 AAA
74909917 TTACAAAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
26 11 0.42
27 8 0.31
28 7 0.27
ACGTcount: A:0.65, C:0.12, G:0.11, T:0.12
Consensus pattern (28 bp):
AAAAGAACAGAAAAGAAATCTAAACACT
Found at i:74910191 original size:21 final size:21
Alignment explanation
Indices: 74910165--74910220 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
74910155 GCTTCAGGGG
* *
74910165 TGTGTTGTGATATCCTATGGC
1 TGTGTTGTGACACCCTATGGC
*
74910186 TGTGTTGTGACACCCTATGGT
1 TGTGTTGTGACACCCTATGGC
*
74910207 TGTGTAGTGACACC
1 TGTGTTGTGACACC
74910221 AAAGGCAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.16, C:0.18, G:0.29, T:0.38
Consensus pattern (21 bp):
TGTGTTGTGACACCCTATGGC
Found at i:74921983 original size:29 final size:29
Alignment explanation
Indices: 74921903--74922039 Score: 132
Period size: 29 Copynumber: 4.6 Consensus size: 29
74921893 AGTCTGCAAT
*
74921903 GGAAGCCTTTGTGGCTAATCTCTGTTAAA
1 GGAAGCCTTTGTGGCTAATCTATGTTAAA
* *
74921932 TGGAAGCCTTTTTTGAGAATAATCTATGTTAAA
1 -GGAAGCC-TTTGTG-G-CTAATCTATGTTAAA
* * *
74921965 GGAAGTCTTTGTGGCTAATCTCTGTTATA
1 GGAAGCCTTTGTGGCTAATCTATGTTAAA
*
74921994 GGAAGCCATTGTGGC-AATCTATGTTAAAA
1 GGAAGCCTTTGTGGCTAATCTATGTT-AAA
* **
74922023 GGATGTGTTTGTGGCTA
1 GGAAGCCTTTGTGGCTA
74922040 TCTCAGTTAA
Statistics
Matches: 86, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
28 9 0.10
29 38 0.44
30 9 0.10
31 10 0.12
32 7 0.08
33 13 0.15
ACGTcount: A:0.26, C:0.12, G:0.25, T:0.36
Consensus pattern (29 bp):
GGAAGCCTTTGTGGCTAATCTATGTTAAA
Found at i:74922042 original size:29 final size:28
Alignment explanation
Indices: 74921903--74922060 Score: 102
Period size: 29 Copynumber: 5.3 Consensus size: 28
74921893 AGTCTGCAAT
* *
74921903 GGAAGCCTTTGTGGCTAATCTCTGTTAAA
1 GGAAGTCTTTGTGGCT-ATCTATGTTAAA
* * *
74921932 TGGAAGCCTTTTTTGAGAATAATCTATGTTAAA
1 -GGAAGTC-TTTGTG-G-CT-ATCTATGTTAAA
* *
74921965 GGAAGTCTTTGTGGCTAATCTCTGTTATA
1 GGAAGTCTTTGTGGCT-ATCTATGTTAAA
* * *
74921994 GGAAGCCATTGTGGCAATCTATGTTAAAA
1 GGAAGTCTTTGTGGCTATCTATGTT-AAA
* *
74922023 GGATGTGTTTGTGGCTATCTCA-GTTAAA
1 GGAAGTCTTTGTGGCTATCT-ATGTTAAA
*
74922051 TGAATGTCTT
1 GGAA-GTCTT
74922061 GTGAAAAACT
Statistics
Matches: 101, Mismatches: 21, Indels: 13
0.75 0.16 0.10
Matches are distributed among these distances:
28 13 0.13
29 49 0.49
30 9 0.09
31 10 0.10
32 7 0.07
33 13 0.13
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (28 bp):
GGAAGTCTTTGTGGCTATCTATGTTAAA
Found at i:74922063 original size:57 final size:57
Alignment explanation
Indices: 74921903--74922050 Score: 154
Period size: 62 Copynumber: 2.5 Consensus size: 57
74921893 AGTCTGCAAT
* * * * *
74921903 GGAAGCCTTTGTGGCTAATCTCTGTTAAATGGAAGCCTTTTTTGAGAATAATCTATGTTAAA
1 GGAAGTCTTTGTGGCTAATCTCAGTTAAA-GGAAGCC-ATTGTG-G--CAATCTATGTTAAA
* *
74921965 GGAAGTCTTTGTGGCTAATCTCTGTTATAGGAAGCCATTGTGGCAATCTATGTTAAAA
1 GGAAGTCTTTGTGGCTAATCTCAGTTAAAGGAAGCCATTGTGGCAATCTATGTT-AAA
* *
74922023 GGATGTGTTTGTGGCT-ATCTCAGTTAAA
1 GGAAGTCTTTGTGGCTAATCTCAGTTAAA
74922051 TGAATGTCTT
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
57 20 0.26
58 17 0.22
59 1 0.01
60 4 0.05
61 7 0.09
62 27 0.36
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (57 bp):
GGAAGTCTTTGTGGCTAATCTCAGTTAAAGGAAGCCATTGTGGCAATCTATGTTAAA
Found at i:74926445 original size:48 final size:48
Alignment explanation
Indices: 74926378--74926610 Score: 194
Period size: 48 Copynumber: 4.9 Consensus size: 48
74926368 CACATAGTAG
* * * *
74926378 GATGCCCATGCCATATCCCAGATATGGTCTTACATGATATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATC
* * *
74926426 GATGCCAATGCTATGTCCCAGACATGGTCTTATATGGGATCATGCATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGAGATCA--CATATC
* * * * *
74926476 GA----AAT-CAATAG-CCTAG-CTATGGTCTTACACGATG-TCTCATATT
1 GATGCCAATGCCAT-GTCCCAGAC-ATGGTCTTACATGA-GATCACATATC
* * * *
74926519 GATGCCAATGCCATGTCCCAGGCATGGTCTTACATGGGATCACATTTA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATC
* * *
74926567 TATGCCAATGCCATTTCCCAGAAATGGTCTTACATGAGATCACA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGAGATCACA
74926611 CATATCCCTA
Statistics
Matches: 146, Mismatches: 26, Indels: 26
0.74 0.13 0.13
Matches are distributed among these distances:
43 7 0.05
44 1 0.01
45 20 0.14
46 5 0.03
47 5 0.03
48 99 0.68
49 1 0.01
50 8 0.05
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATC
Found at i:74930354 original size:28 final size:28
Alignment explanation
Indices: 74930317--74930388 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
74930307 TTGGGCCTGA
*
74930317 TGGGCTATATGAATGTGATTAGGCCTAG
1 TGGGCCATATGAATGTGATTAGGCCTAG
* *
74930345 TGGGCCATATAAATGTGATTGGGCCTAG
1 TGGGCCATATGAATGTGATTAGGCCTAG
* *
74930373 TGGGTCATATGCATGT
1 TGGGCCATATGAATGT
74930389 ATGTAGAATT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.24, C:0.12, G:0.32, T:0.32
Consensus pattern (28 bp):
TGGGCCATATGAATGTGATTAGGCCTAG
Found at i:74932275 original size:27 final size:27
Alignment explanation
Indices: 74932244--74932654 Score: 376
Period size: 27 Copynumber: 15.3 Consensus size: 27
74932234 TTACACTACA
*
74932244 AGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
74932271 GGGGTGTTTC-AGTAATTTTACAAATCA
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
74932298 AAGGTATTT-TAGTAATTTTACAAATAG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
74932325 AGGATATTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
*
74932352 AGGGTATTTC-AGTAATTTTACAAATCA
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * * *
74932379 AGGATGTTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * * *
74932406 AAGGTGTTTC-AGTAATTTCATAAATTG
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
74932433 -GGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
74932459 AGGGTATTT-TAGTAA-TTT-CATAATCG
1 AGGGTATTTCGA-TAATTTTACA-AATCG
*
74932485 AGGGTATTTCGATAATTTTACAAAT-T
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
74932511 AGGGGTATTTCAATAATTTCAC-AATCA
1 A-GGGTATTTCGATAATTTTACAAATCG
* * *
74932538 AGGGTATTTTGGTAATTTTATAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
74932565 -GGGTTGTTTCGATAATTTTACAAATCG
1 AGGG-TATTTCGATAATTTTACAAATCG
* * * *
74932592 AGGGTGTTTCGGTAATTTCATAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
74932619 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
74932646 AGGGTATTT
1 AGGGTATTT
74932655 TAGTAATTTC
Statistics
Matches: 313, Mismatches: 53, Indels: 36
0.78 0.13 0.09
Matches are distributed among these distances:
25 2 0.01
26 64 0.20
27 241 0.77
28 6 0.02
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:74936173 original size:28 final size:28
Alignment explanation
Indices: 74936142--74936269 Score: 154
Period size: 29 Copynumber: 4.6 Consensus size: 28
74936132 TAGCTATCAA
*
74936142 TGTTAATGGAAGCCTTTGTGG-TGAGCTC
1 TGTTAATGGAAGCCTTTGTGGCT-ATCTC
*
74936170 TGTTAAAAGGAAGCCTTTGTGGCTATCTC
1 TGTT-AATGGAAGCCTTTGTGGCTATCTC
* * *
74936199 TATTAATGGAAGCCTTT-T-GCGATCTT
1 TGTTAATGGAAGCCTTTGTGGCTATCTC
*
74936225 TGTTAAAAGGAAGCCTTTGTGGCTATCTC
1 TGTT-AATGGAAGCCTTTGTGGCTATCTC
74936254 TGTTAATGGAAGCCTT
1 TGTTAATGGAAGCCTT
74936270 GTTTCAATAA
Statistics
Matches: 84, Mismatches: 11, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
26 9 0.11
27 13 0.15
28 28 0.33
29 33 0.39
30 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.37
Consensus pattern (28 bp):
TGTTAATGGAAGCCTTTGTGGCTATCTC
Found at i:74936186 original size:29 final size:28
Alignment explanation
Indices: 74936119--74936269 Score: 146
Period size: 28 Copynumber: 5.4 Consensus size: 28
74936109 GGCGTAATCT
* * * **
74936119 AAGGAATCCTTTTTAGCTATCAATGTTA
1 AAGGAAGCCTTTGTGGCTATCTCTGTTA
* *
74936147 ATGGAAGCCTTTGTGG-TGAGCTCTGTTAA
1 AAGGAAGCCTTTGTGGCT-ATCTCTGTT-A
*
74936176 AAGGAAGCCTTTGTGGCTATCTCTATTA
1 AAGGAAGCCTTTGTGGCTATCTCTGTTA
* * *
74936204 ATGGAAGCCTTT-T-GCGATCTTTGTTAA
1 AAGGAAGCCTTTGTGGCTATCTCTGTT-A
74936231 AAGGAAGCCTTTGTGGCTATCTCTGTTA
1 AAGGAAGCCTTTGTGGCTATCTCTGTTA
*
74936259 ATGGAAGCCTT
1 AAGGAAGCCTT
74936270 GTTTCAATAA
Statistics
Matches: 99, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
26 9 0.09
27 14 0.14
28 42 0.42
29 33 0.33
30 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (28 bp):
AAGGAAGCCTTTGTGGCTATCTCTGTTA
Found at i:74936245 original size:55 final size:57
Alignment explanation
Indices: 74936144--74936269 Score: 202
Period size: 55 Copynumber: 2.2 Consensus size: 57
74936134 GCTATCAATG
*
74936144 TTAATGGAAGCCTTTGTGGTGAGCTCTGTTAAAAGGAAGCCTTTGTGGCTATCTCTA
1 TTAATGGAAGCCTTTGTGGCGAGCTCTGTTAAAAGGAAGCCTTTGTGGCTATCTCTA
* * *
74936201 TTAATGGAAGCCTTT-T-GCGATCTTTGTTAAAAGGAAGCCTTTGTGGCTATCTCTG
1 TTAATGGAAGCCTTTGTGGCGAGCTCTGTTAAAAGGAAGCCTTTGTGGCTATCTCTA
74936256 TTAATGGAAGCCTT
1 TTAATGGAAGCCTT
74936270 GTTTCAATAA
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
55 49 0.75
56 1 0.02
57 15 0.23
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.37
Consensus pattern (57 bp):
TTAATGGAAGCCTTTGTGGCGAGCTCTGTTAAAAGGAAGCCTTTGTGGCTATCTCTA
Found at i:74936354 original size:61 final size:61
Alignment explanation
Indices: 74936284--74936408 Score: 160
Period size: 61 Copynumber: 2.0 Consensus size: 61
74936274 CAATAATCTA
* * *
74936284 AAGGCAAAGTCTATATGGCAAGTACTGAATGTTAAAGGAATGCCTTTGTGGCAATACTTTG
1 AAGGCAAAGTCTATATGACAAGTACTGAATGCTAAAGGAATGCCTTGGTGGCAATACTTTG
* * * * * * *
74936345 AAGGGAAAGTGTTTGTGATAAGTATTGAATGCTAAAGGAATGTCTTGGTGGCAATACTTTG
1 AAGGCAAAGTCTATATGACAAGTACTGAATGCTAAAGGAATGCCTTGGTGGCAATACTTTG
74936406 AAG
1 AAG
74936409 TTAAGATGTT
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 54 1.00
ACGTcount: A:0.33, C:0.10, G:0.27, T:0.30
Consensus pattern (61 bp):
AAGGCAAAGTCTATATGACAAGTACTGAATGCTAAAGGAATGCCTTGGTGGCAATACTTTG
Found at i:74937849 original size:42 final size:43
Alignment explanation
Indices: 74937686--74937893 Score: 208
Period size: 43 Copynumber: 4.8 Consensus size: 43
74937676 GCATAGGATT
* * * *
74937686 TCGATATGTGATTTCATGTACGACCTTGTCTGGGACAGTGGCA
1 TCGATATTTGATTACATGTAAGACCATGTCTGGGACAGTGGCA
* * *
74937729 TCGATATTTGATTACGTGTAACACCATGTCTGGGA-TGTTGGCA
1 TCGATATTTGATTACATGTAAGACCATGTCTGGGACAG-TGGCA
* * *
74937772 TC-AAATTGAGATTTACGTGTAAGACCATGTCTGGGACA-TCGGCA
1 TCGATATT-TGA-TTACATGTAAGACCATGTCTGGGACAGT-GGCA
* * * *
74937816 TCG-TATTTGGTTTCATGTAAGACCCTGTTTGGGACAGTGGCA
1 TCGATATTTGATTACATGTAAGACCATGTCTGGGACAGTGGCA
* *
74937858 TCGATATTTGATTACATGTAAGACCACGTCTAGGAC
1 TCGATATTTGATTACATGTAAGACCATGTCTGGGAC
74937894 GTTAGCATCG
Statistics
Matches: 133, Mismatches: 24, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
42 34 0.26
43 67 0.50
44 32 0.24
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TCGATATTTGATTACATGTAAGACCATGTCTGGGACAGTGGCA
Found at i:74938113 original size:19 final size:20
Alignment explanation
Indices: 74938081--74938119 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
74938071 TATGACAATG
74938081 AATGATATGAATG-TATATA
1 AATGATATGAATGTTATATA
74938100 AATGA-ATGATATGTTATATA
1 AATGATATGA-ATGTTATATA
74938120 CGCTCATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 8 0.44
20 6 0.33
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (20 bp):
AATGATATGAATGTTATATA
Found at i:74940923 original size:53 final size:53
Alignment explanation
Indices: 74940854--74941110 Score: 286
Period size: 53 Copynumber: 4.8 Consensus size: 53
74940844 GGCACTTAAG
* * * * * *
74940854 GACCATATTGTCTAAGAATATAACTGGTAGGTCATGGCATCATATGGAAAAAA
1 GACCATATTGTGTAAGACTGTAATTGGTGGGTTATGGCATCATATGGAAAAAA
* *
74940907 GACCATATCGTGTAAGA-TCGTAATTGGTGGGTTATGGCATCAAATGGAAAGAAA
1 GACCATATTGTGTAAGACT-GTAATTGGTGGGTTATGGCATCATATGGAAA-AAA
** * * * * *
74940961 -ACCATATCATGTAATACTGTAACTGATGGGTTATGGCATTATAT-TAAAAGAA
1 GACCATATTGTGTAAGACTGTAATTGGTGGGTTATGGCATCATATGGAAAA-AA
* * *
74941013 GACCATATTGTGTAAGACCGTAATTGGTGGGTTATGACATCATATGGAAAGAA
1 GACCATATTGTGTAAGACTGTAATTGGTGGGTTATGGCATCATATGGAAAAAA
* *
74941066 GACTATATTGTGTAAGACTGTAATTGGTGGGTTATGACATCATAT
1 GACCATATTGTGTAAGACTGTAATTGGTGGGTTATGGCATCATAT
74941111 AATAAATTAA
Statistics
Matches: 172, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
51 1 0.01
52 6 0.03
53 158 0.92
54 7 0.04
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.30
Consensus pattern (53 bp):
GACCATATTGTGTAAGACTGTAATTGGTGGGTTATGGCATCATATGGAAAAAA
Found at i:74945185 original size:40 final size:40
Alignment explanation
Indices: 74944981--74945185 Score: 236
Period size: 40 Copynumber: 5.1 Consensus size: 40
74944971 CGGAATTTAA
** *
74944981 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
74945021 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
74945061 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
74945101 CCGGATTTAGTAACTCGCACAAATGCATTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
74945141 CCGGATATGGTCACTTAGCACAAA-GCCTTCGAGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
74945181 CCGGA
1 CCGGA
74945186 CATCATTCAA
Statistics
Matches: 144, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 4 0.03
40 130 0.90
41 10 0.07
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:74947360 original size:23 final size:23
Alignment explanation
Indices: 74947330--74947415 Score: 84
Period size: 23 Copynumber: 3.7 Consensus size: 23
74947320 AATACATCAT
*
74947330 AAAGGCTTTATAGAACACACCAC
1 AAAGGCTTTACAGAACACACCAC
* **
74947353 AAAGGCTTTACAGAATATGCCAC
1 AAAGGCTTTACAGAACACACCAC
* * **
74947376 ATAGGCTTTACCA-AATATGCCAC
1 AAAGGCTTTA-CAGAACACACCAC
74947399 AAAGGCTTTACAGAACA
1 AAAGGCTTTACAGAACA
74947416 TTATGTGTTT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
22 2 0.04
23 50 0.93
24 2 0.04
ACGTcount: A:0.41, C:0.23, G:0.15, T:0.21
Consensus pattern (23 bp):
AAAGGCTTTACAGAACACACCAC
Found at i:74959460 original size:23 final size:23
Alignment explanation
Indices: 74959426--74959515 Score: 90
Period size: 23 Copynumber: 3.9 Consensus size: 23
74959416 CAAGATACGT
74959426 CACAAAGGCTTTACAGAACATGC
1 CACAAAGGCTTTACAGAACATGC
* * *
74959449 CACAAAGACTTTACAGAATATAC
1 CACAAAGGCTTTACAGAACATGC
* * * * *
74959472 AACACATGCTTTACTGAATATGC
1 CACAAAGGCTTTACAGAACATGC
* *
74959495 CTCAAAGGCTTTAGAGAACAT
1 CACAAAGGCTTTACAGAACAT
74959516 TACGTGTTTA
Statistics
Matches: 51, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.40, C:0.22, G:0.14, T:0.23
Consensus pattern (23 bp):
CACAAAGGCTTTACAGAACATGC
Found at i:74961231 original size:23 final size:23
Alignment explanation
Indices: 74961196--74961254 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 23
74961186 TAGTACACGT
* * *
74961196 CACAAAGGTTTTATACA-ATATGC
1 CACAAAAGCTTTA-ACAGATATAC
* *
74961219 CACACAAGCTTTACCAGATATAC
1 CACAAAAGCTTTAACAGATATAC
74961242 CACAAAAGCTTTA
1 CACAAAAGCTTTA
74961255 CAAAACATAC
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
22 2 0.07
23 27 0.93
ACGTcount: A:0.41, C:0.24, G:0.10, T:0.25
Consensus pattern (23 bp):
CACAAAAGCTTTAACAGATATAC
Found at i:74961264 original size:23 final size:23
Alignment explanation
Indices: 74961218--74961264 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
74961208 ATACAATATG
* * * *
74961218 CCACACAAGCTTTACCAGATATA
1 CCACAAAAGCTTTACAAAACATA
74961241 CCACAAAAGCTTTACAAAACATA
1 CCACAAAAGCTTTACAAAACATA
74961264 C
1 C
74961265 GTGTTTACTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.45, C:0.30, G:0.06, T:0.19
Consensus pattern (23 bp):
CCACAAAAGCTTTACAAAACATA
Found at i:74963463 original size:19 final size:19
Alignment explanation
Indices: 74963439--74963478 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
74963429 GTGAACATGC
74963439 ATATGTGTGATAAGGCCGA
1 ATATGTGTGATAAGGCCGA
74963458 ATATGTGTGATAAGGCCGA
1 ATATGTGTGATAAGGCCGA
74963477 AT
1 AT
74963479 GGCCAATGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (19 bp):
ATATGTGTGATAAGGCCGA
Found at i:74963498 original size:66 final size:66
Alignment explanation
Indices: 74963392--74963525 Score: 241
Period size: 66 Copynumber: 2.0 Consensus size: 66
74963382 GTGAGCATGC
74963392 ATATATGTGATAAGGCCGAATGACCAAAGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGACCAAAGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
74963457 A
66 A
* * *
74963458 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGACCAAAGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
74963523 A
66 A
74963524 AT
1 AT
74963526 GGCCAATGTG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.25
Consensus pattern (66 bp):
ATATATGTGATAAGGCCGAATGACCAAAGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
A
Found at i:74963514 original size:47 final size:47
Alignment explanation
Indices: 74963458--74963634 Score: 345
Period size: 47 Copynumber: 3.8 Consensus size: 47
74963448 ATAAGGCCGA
*
74963458 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
74963505 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
74963552 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
74963599 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAA
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAA
74963635 CGTGGAAGTG
Statistics
Matches: 129, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.25
Consensus pattern (47 bp):
ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
Found at i:74963669 original size:94 final size:94
Alignment explanation
Indices: 74963458--74963654 Score: 306
Period size: 94 Copynumber: 2.1 Consensus size: 94
74963448 ATAAGGCCGA
* *
74963458 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
1 ATATATGTGAGAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
* *
74963523 AATGGCCAATGTGATGAATGTGAGCATGC
66 AATGGCCAATGTGATGAACGTGAGAATGC
* * *
74963552 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGAGAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
*
74963617 AATGGCCAATGTGATGAACGTG-GAAGTGT
66 AATGGCCAATGTGATGAACGTGAGAA-TGC
74963646 ATATATGTG
1 ATATATGTG
74963655 GCGAAGCTGA
Statistics
Matches: 97, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
93 2 0.02
94 95 0.98
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.26
Consensus pattern (94 bp):
ATATATGTGAGAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCG
AATGGCCAATGTGATGAACGTGAGAATGC
Found at i:74963719 original size:46 final size:46
Alignment explanation
Indices: 74963664--74963784 Score: 161
Period size: 46 Copynumber: 2.6 Consensus size: 46
74963654 GGCGAAGCTG
* *
74963664 AATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTAAAGCCG
1 AATGGCTAATGCGAAATGTGTATGAGATGGATACGAGGTAAAGCCA
* * * *
74963710 AGTGGCTAATGCAAAACGTGTATGAGATGGATACGTGGTAAAGCCA
1 AATGGCTAATGCGAAATGTGTATGAGATGGATACGAGGTAAAGCCA
* * *
74963756 AATGGCTAATGTGAGATATGTATGAGATG
1 AATGGCTAATGCGAAATGTGTATGAGATG
74963785 TGTATATATA
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 63 1.00
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
AATGGCTAATGCGAAATGTGTATGAGATGGATACGAGGTAAAGCCA
Found at i:74965330 original size:40 final size:40
Alignment explanation
Indices: 74965275--74965588 Score: 517
Period size: 40 Copynumber: 7.9 Consensus size: 40
74965265 ATTGAGAGTT
74965275 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
74965315 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
74965355 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
74965395 ATATATCCGGGCTGAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
74965435 ACATATCTGGGCTAA-TCCCGAAGAGCATTCGTGCTCGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
74965474 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
74965514 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
74965554 ATATATCTGTGCTAA-ACCTCGAAG-GCATTCGTGCT
1 ATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCT
74965589 GGAATTATGA
Statistics
Matches: 258, Mismatches: 14, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
39 49 0.19
40 209 0.81
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:74965502 original size:119 final size:119
Alignment explanation
Indices: 74965275--74965588 Score: 531
Period size: 119 Copynumber: 2.6 Consensus size: 119
74965265 ATTGAGAGTT
*
74965275 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCTGGGCTAA-TCCCGAAGA
74965340 GCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
65 GCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
74965395 ATATATCCGGGCTGAGTCCCGAAGAGCATTCGTGCTAGTGACATATCTGGGCTAATCCCGAAGAG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCTGGGCTAATCCCGAAGAG
* *
74965460 CATTCGTGCTCGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
66 CATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
74965514 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCTGTGCTAAACCTCGAAG-
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCTGGGCTAATCC-CGAAGA
74965578 GCATTCGTGCT
65 GCATTCGTGCT
74965589 GGAATTATGA
Statistics
Matches: 183, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
119 126 0.69
120 57 0.31
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (119 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCTGGGCTAATCCCGAAGAG
CATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:74965716 original size:28 final size:28
Alignment explanation
Indices: 74965628--74965717 Score: 76
Period size: 28 Copynumber: 3.2 Consensus size: 28
74965618 CTTCAACCGA
*
74965628 GCACTATGTGTGCCAGATCAGT-AGTTGAG
1 GCACTATGTGTGCAAGATCAGTCAG-TG-G
* * * * *
74965657 GCACTATGTGTGGAAGTTC-TTCAATCGA
1 GCACTATGTGTGCAAGATCAGTCAGT-GG
*
74965685 GCACTATGTGTGCAAAATCAGTCAGTGG
1 GCACTATGTGTGCAAGATCAGTCAGTGG
74965713 GCACT
1 GCACT
74965718 GTGTATGCGA
Statistics
Matches: 46, Mismatches: 12, Indels: 7
0.71 0.18 0.11
Matches are distributed among these distances:
28 24 0.52
29 22 0.48
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCAAGATCAGTCAGTGG
Found at i:74965730 original size:57 final size:58
Alignment explanation
Indices: 74965596--74965730 Score: 179
Period size: 57 Copynumber: 2.4 Consensus size: 58
74965586 GCTGGAATTA
* * *
74965596 TGAGGCACTGTGTGTGC-AAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTGTGTGTGCGAAGTTCTTCAACCGAGCACTATGTGTGCAAAATCAGTAGT
* *
74965653 TGAGGCACTATGTGTG-GAAGTTCTTCAATCGAGCACTATGTGTGCAAAATCAGTCAG-
1 TGAGGCACTGTGTGTGCGAAGTTCTTCAACCGAGCACTATGTGTGCAAAATCAGT-AGT
*
74965710 TG-GGCACTGTGTATGCGAAGT
1 TGAGGCACTGTGTGTGCGAAGT
74965731 GTGTTTCATG
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
56 11 0.16
57 55 0.81
58 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.27
Consensus pattern (58 bp):
TGAGGCACTGTGTGTGCGAAGTTCTTCAACCGAGCACTATGTGTGCAAAATCAGTAGT
Found at i:74968572 original size:47 final size:47
Alignment explanation
Indices: 74968517--74968762 Score: 411
Period size: 47 Copynumber: 5.2 Consensus size: 47
74968507 TTAGGATTTT
* * *
74968517 AATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGACC
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
74968564 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
*
74968611 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCTGAATGGCC
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
* *
74968658 AATGTGATGAATGTGAGCATGCATATGTGTTATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
* **
74968705 AATGTGATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCC
1 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
74968752 AATGTGATGAA
1 AATGTGATGAA
74968763 CGTGGAAGTG
Statistics
Matches: 187, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 187 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
Found at i:74968652 original size:25 final size:25
Alignment explanation
Indices: 74968577--74968652 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
74968567 GTGATGAATG
74968577 TGAACATGCATATGTGTGATAAGGC
1 TGAACATGCATATGTGTGATAAGGC
* *
74968602 CG-A-ATGGCCA-A--TGTGATGAATG-
1 TGAACAT-G-CATATGTGTGAT-AAGGC
74968624 TGAACATGCATATGTGTGATAAGGC
1 TGAACATGCATATGTGTGATAAGGC
74968649 TGAA
1 TGAA
74968653 TGGCCAATGT
Statistics
Matches: 38, Mismatches: 4, Indels: 18
0.63 0.07 0.30
Matches are distributed among these distances:
22 9 0.24
23 8 0.21
24 8 0.21
25 13 0.34
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (25 bp):
TGAACATGCATATGTGTGATAAGGC
Found at i:74968795 original size:47 final size:47
Alignment explanation
Indices: 74968517--74968802 Score: 324
Period size: 47 Copynumber: 6.1 Consensus size: 47
74968507 TTAGGATTTT
* * * *
74968517 AATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGACC
1 AATGTGATGAACGTGAACATGCATATATGTGAGAAGGCCGAATGGCC
* * *
74968564 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAACGTGAACATGCATATATGTGAGAAGGCCGAATGGCC
* * * *
74968611 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCTGAATGGCC
1 AATGTGATGAACGTGAACATGCATATATGTGAGAAGGCCGAATGGCC
* * * * *
74968658 AATGTGATGAATGTGAGCATGCATATGTGTTATAAGGCCGAATGGCC
1 AATGTGATGAACGTGAACATGCATATATGTGAGAAGGCCGAATGGCC
* * **
74968705 AATGTGATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCC
1 AATGTGATGAACGTGAACATGCATATATGTGAGAAGGCCGAATGGCC
* * * *
74968752 AATGTGATGAACGTGGAA-GTGTATATATGTGGCGAA-GCCGAATGGCT
1 AATGTGATGAACGT-GAACATGCATATATGT-GAGAAGGCCGAATGGCC
74968799 AATG
1 AATG
74968803 CAAAATGTGT
Statistics
Matches: 217, Mismatches: 20, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
47 211 0.97
48 6 0.03
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
AATGTGATGAACGTGAACATGCATATATGTGAGAAGGCCGAATGGCC
Found at i:74968795 original size:141 final size:141
Alignment explanation
Indices: 74968517--74968802 Score: 414
Period size: 141 Copynumber: 2.0 Consensus size: 141
74968507 TTAGGATTTT
74968517 AATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAC
* * * * *
74968582 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAG
66 ATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCATATATGTGAGAAG
*
74968647 GCTGAATGGCC
131 GCCGAATGGCC
* * *
74968658 AATGTGATGAATGTGAGCATGCATATGTGTTATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAC
* * * *
74968723 ATGCATATATGTGATAAGGTAGAATGGCCAATGTGATGAACGTGGAA-GTGTATATATGTGGCGA
66 ATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGT-GAACATGCATATATGT-GAGA
*
74968787 A-GCCGAATGGCT
129 AGGCCGAATGGCC
74968799 AATG
1 AATG
74968803 CAAAATGTGT
Statistics
Matches: 129, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
141 123 0.95
142 6 0.05
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.27
Consensus pattern (141 bp):
AATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAC
ATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCATATATGTGAGAAG
GCCGAATGGCC
Found at i:74968836 original size:46 final size:46
Alignment explanation
Indices: 74968786--74968912 Score: 173
Period size: 46 Copynumber: 2.8 Consensus size: 46
74968776 ATATGTGGCG
*
74968786 AAGCCGAATGGCTAATGCAAAATGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCAAAATGTGTATGAGATGGATACGAGGTA
* * *
74968832 AAGCCGAGTGGCTAATGCAAAACGTGTATGAGATGGATACGTGGTA
1 AAGCCGAATGGCTAATGCAAAATGTGTATGAGATGGATACGAGGTA
* ** * *
74968878 AAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 AAGCCGAATGGCTAATGCAAAATGTGTATGAGATG
74968913 TGTATATATA
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.35, C:0.10, G:0.31, T:0.24
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCAAAATGTGTATGAGATGGATACGAGGTA
Found at i:74975131 original size:32 final size:32
Alignment explanation
Indices: 74975090--74975161 Score: 144
Period size: 32 Copynumber: 2.2 Consensus size: 32
74975080 TTAGAGAGTT
74975090 ACACGCCCATGTGTGTTGAATCCTATGGTCAC
1 ACACGCCCATGTGTGTTGAATCCTATGGTCAC
74975122 ACACGCCCATGTGTGTTGAATCCTATGGTCAC
1 ACACGCCCATGTGTGTTGAATCCTATGGTCAC
74975154 ACACGCCC
1 ACACGCCC
74975162 GTGCGGCTTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.25
Consensus pattern (32 bp):
ACACGCCCATGTGTGTTGAATCCTATGGTCAC
Found at i:74976989 original size:49 final size:50
Alignment explanation
Indices: 74976891--74977179 Score: 276
Period size: 49 Copynumber: 5.8 Consensus size: 50
74976881 AATCGAAGCT
* * ** * **
74976891 ATCTGGTACGCATAGTAGCCTATACTTAGTACTACACATGCAACC-AACA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACA
* *
74976940 ATCCGATACACGTAGTAGCCTGCACTTAG-ACTACACACGTGACCTAACA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACA
* * * **
74976989 ATCTGATACACATAGTAGTCTGCACTTAGTACTACACACGTGATCGAAGTT
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CA
* * * * * * * *
74977040 GTCGGGTACGCATAGTAGCATGCACTTAGTACTACACATGCGACCTAACT
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACA
* * * *
74977090 ATTTGATACACGTAGTAGCCTGTACTTAGTACTACACACGTGACCTAAAACC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACA
* * *
74977142 ATCTTAAACACATAGTAGCCTGCACATAGTACTACACA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACA
74977180 TGTGTTCTCA
Statistics
Matches: 191, Mismatches: 44, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
48 12 0.06
49 53 0.28
50 53 0.28
51 38 0.20
52 35 0.18
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (50 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACA
Found at i:74977099 original size:101 final size:100
Alignment explanation
Indices: 74976952--74977132 Score: 281
Period size: 101 Copynumber: 1.8 Consensus size: 100
74976942 CCGATACACG
* * *
74976952 TAGTAGCCTGCACTTAGACTACACACGTGACCTAACAATCTGATACACATAGTAGTCTGCACTTA
1 TAGTAGCATGCACTTAGACTACACACGCGACCTAACAATCTGATACACATAGTAGCCTGCACTTA
74977017 GTACTACACACGTGATCGAAGTTGTCGGGTACGCA
66 GTACTACACACGTGATCGAAGTTGTCGGGTACGCA
* * * * *
74977052 TAGTAGCATGCACTTAGTACTACACATGCGACCTAACTATTTGATACACGTAGTAGCCTGTACTT
1 TAGTAGCATGCACTTAG-ACTACACACGCGACCTAACAATCTGATACACATAGTAGCCTGCACTT
74977117 AGTACTACACACGTGA
65 AGTACTACACACGTGA
74977133 CCTAAAACCA
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 16 0.22
101 56 0.78
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (100 bp):
TAGTAGCATGCACTTAGACTACACACGCGACCTAACAATCTGATACACATAGTAGCCTGCACTTA
GTACTACACACGTGATCGAAGTTGTCGGGTACGCA
Found at i:74977123 original size:50 final size:50
Alignment explanation
Indices: 74976901--74977179 Score: 253
Period size: 50 Copynumber: 5.6 Consensus size: 50
74976891 ATCTGGTACG
** * ** **
74976901 CATAGTAGCCTATACTTAGTACTACACATGCAACC-AACAATCCGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATTTGATACA
* *
74976950 CGTAGTAGCCTGCACTTAG-ACTACACACGTGACCTAACAATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATTTGATACA
* * * * * *
74976999 CATAGTAGTCTGCACTTAGTACTACACACGTGATC-GA-AGTTGTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATT-T--GATACA
* * * *
74977050 CATAGTAGCATGCACTTAGTACTACACATGCGACCTAACTATTTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATTTGATACA
* * * *
74977100 CGTAGTAGCCTGTACTTAGTACTACACACGTGACCTAAAACCATCTT-AAACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACAAT-TTGATACA
*
74977152 CATAGTAGCCTGCACATAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
74977180 TGTGTTCTCA
Statistics
Matches: 185, Mismatches: 35, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
48 14 0.08
49 48 0.26
50 49 0.26
51 34 0.18
52 36 0.19
53 4 0.02
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATTTGATACA
Found at i:74980398 original size:29 final size:30
Alignment explanation
Indices: 74980357--74980433 Score: 111
Period size: 33 Copynumber: 2.5 Consensus size: 30
74980347 CTATCTGTAT
74980357 TTATCAACCCATTCTCAATCACTAATCATGC
1 TTAT-AACCCATTCTCAATCACTAATCATGC
74980388 TTATAACCATTCATTCTCAATCACTAATCATGC
1 TTATAACC---CATTCTCAATCACTAATCATGC
74980421 TTATAA-CCATTCT
1 TTATAACCCATTCT
74980434 ATCACTGAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
29 6 0.14
30 4 0.09
31 4 0.09
32 1 0.02
33 28 0.65
ACGTcount: A:0.32, C:0.29, G:0.03, T:0.36
Consensus pattern (30 bp):
TTATAACCCATTCTCAATCACTAATCATGC
Found at i:74980404 original size:33 final size:33
Alignment explanation
Indices: 74980366--74980432 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
74980356 TTTATCAACC
74980366 CATTCTCAATCACTAATCATGCTTATAACCATT
1 CATTCTCAATCACTAATCATGCTTATAACCATT
74980399 CATTCTCAATCACTAATCATGCTTATAACCATT
1 CATTCTCAATCACTAATCATGCTTATAACCATT
74980432 C
1 C
74980433 TATCACTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.33, C:0.28, G:0.03, T:0.36
Consensus pattern (33 bp):
CATTCTCAATCACTAATCATGCTTATAACCATT
Found at i:74983524 original size:22 final size:22
Alignment explanation
Indices: 74983497--74983574 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
74983487 TTAGTACTAC
74983497 ACACGTGACCTAACCATCTGAT
1 ACACGTGACCTAACCATCTGAT
* * *
74983519 ACACGTAGTAGCCTACACTTAGTAC-CAC
1 ACACGT-G-A-CCTA-AC-CA-T-CTGAT
74983547 ACACGTGACCTAACCATCTGAT
1 ACACGTGACCTAACCATCTGAT
74983569 ACACGT
1 ACACGT
74983575 AGTAGCATGC
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 1 0.02
22 14 0.33
23 2 0.05
24 3 0.07
25 8 0.19
26 3 0.07
27 2 0.05
28 8 0.19
29 1 0.02
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.22
Consensus pattern (22 bp):
ACACGTGACCTAACCATCTGAT
Found at i:74983532 original size:50 final size:50
Alignment explanation
Indices: 74983413--74983702 Score: 289
Period size: 50 Copynumber: 5.8 Consensus size: 50
74983403 CACCAAAGCT
* * * *
74983413 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * *
74983462 ATCCGGTACACGTAGTAGCCTGTACTTAGTACTACACACGTGACCTAACC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * *
74983512 ATCTGATACACGTAGTAGCCTACACTTAGTACCACACACGTGACCTAACC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * * *
74983562 ATCTGATACACGTAGTAGCATGCACTTAGTACTACACACAG-GATCGAA-G
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACAC-GTGACCTAACC
* * * * *
74983611 TTGTTGGGTACGCATAGTAGCCTGCACTTAGTACTACGCACGTGACCTAAAACC
1 AT-CT-GATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACC
* * * *
74983665 ATCTTAAACACATAGTAGCCTACACATAGTACTACACA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACA
74983703 TGTGTTCTCA
Statistics
Matches: 197, Mismatches: 36, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
49 41 0.21
50 91 0.46
51 34 0.17
52 27 0.14
53 3 0.02
54 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (50 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:74986755 original size:26 final size:27
Alignment explanation
Indices: 74986721--74986862 Score: 164
Period size: 27 Copynumber: 5.3 Consensus size: 27
74986711 GGGCATAATC
* *
74986721 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
74986748 GTCA-TTTACCCTAC-GAGGACATTACG
1 GTCATTTTACCCTACAG-GGGCATTACG
** *
74986774 GTTGTTTTACCCTAC-GAGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
74986800 GTCATTTTACCCTACAGAGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
74986827 GTCATTTTATCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
74986854 GTTATTTTA
1 GTCATTTTA
74986863 TCTACTTCGG
Statistics
Matches: 99, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
25 1 0.01
26 40 0.40
27 58 0.59
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:74986810 original size:53 final size:54
Alignment explanation
Indices: 74986721--74986862 Score: 164
Period size: 53 Copynumber: 2.7 Consensus size: 54
74986711 GGGCATAATC
* * * *
74986721 GTCATTTTACCATACAGGGGTATTACGGTCA-TTTACCCTAC-GAGGACATTACG
1 GTCATTTTACCCTATAGAGGCATTACGGTCATTTTACCCTACAGAGG-CATTACG
** *
74986774 GTTGTTTTACCCTA-CGAGGCATTACGGTCATTTTACCCTACAGAGGCATTACG
1 GTCATTTTACCCTATAGAGGCATTACGGTCATTTTACCCTACAGAGGCATTACG
* * *
74986827 GTCATTTTATCCTATAGGGGCATTACGGTTATTTTA
1 GTCATTTTACCCTATAGAGGCATTACGGTCATTTTA
74986863 TCTACTTCGG
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
52 13 0.18
53 39 0.53
54 22 0.30
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (54 bp):
GTCATTTTACCCTATAGAGGCATTACGGTCATTTTACCCTACAGAGGCATTACG
Found at i:74990329 original size:6 final size:6
Alignment explanation
Indices: 74990318--74990349 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
74990308 TTGAAAAGAT
74990318 AATAAA AATAAA AATAAA AATAAA AATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AA
74990350 ATCATAACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:74995034 original size:35 final size:34
Alignment explanation
Indices: 74994994--74995127 Score: 162
Period size: 35 Copynumber: 3.8 Consensus size: 34
74994984 TCATATGGTC
*
74994994 GAATATACAAATTCAATATAATCTCACATGTAACT
1 GAATATACAAGTTCAATATAA-CTCACATGTAACT
74995029 GAATATACAAGTTCAATATAAGCTCACATGTAA-T
1 GAATATACAAGTTCAATATAA-CTCACATGTAACT
* * * *
74995063 CGAATACACAAGTTCAATATAACTTCACATGCAGCC
1 -GAATATACAAGTTCAATATAAC-TCACATGTAACT
*
74995099 AAATATACAAGTTCAATATAACCTCACAT
1 GAATATACAAGTTCAATATAA-CTCACAT
74995128 ATACTTACCT
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
34 2 0.02
35 84 0.97
36 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (34 bp):
GAATATACAAGTTCAATATAACTCACATGTAACT
Found at i:74995040 original size:70 final size:70
Alignment explanation
Indices: 74994914--74995129 Score: 188
Period size: 70 Copynumber: 3.1 Consensus size: 70
74994904 TTATATTATT
* * * * * * *
74994914 TCATATGGCCGAATATATAAGTTCAATAT-ATCATCATAGGTAACCTAATGTTCAAGTTTAATA-
1 TCATATGGTCGAATATACAAGTTCAATATAATCATCACATGTAA-CTAATATACAAGTTCAATAT
74994977 AAACATC
65 AAAC-TC
*
74994984 TCATATGGTCGAATATACAAATTCAATATAATC-TCACATGTAACTGAATATACAAGTTCAATAT
1 TCATATGGTCGAATATACAAGTTCAATATAATCATCACATGTAACT-AATATACAAGTTCAATAT
*
74995048 AAGCTC
65 AAACTC
* * ** * * * * *
74995054 ACATGTAATCGAATACACAAGTTCAATATAA-CTTCACATGCAGCCAAATATACAAGTTCAATAT
1 TCATATGGTCGAATATACAAGTTCAATATAATCATCACATGTA-ACTAATATACAAGTTCAATAT
*
74995118 AACCTC
65 AAACTC
*
74995124 ACATAT
1 TCATAT
74995130 ACTTACCTAT
Statistics
Matches: 121, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
69 3 0.02
70 111 0.92
71 7 0.06
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.30
Consensus pattern (70 bp):
TCATATGGTCGAATATACAAGTTCAATATAATCATCACATGTAACTAATATACAAGTTCAATATA
AACTC
Found at i:75002564 original size:35 final size:35
Alignment explanation
Indices: 75002518--75002720 Score: 192
Period size: 35 Copynumber: 5.8 Consensus size: 35
75002508 CATATGGCCG
* * *
75002518 AATATATAAGTTCAATATATCATCACATGTAACCT
1 AATATACAAGTTCAATATAACATCACATGTAACCA
* * * * * * ** *
75002553 AATGTTCAAGTTTAATAAAACATCTCATATGGCCG
1 AATATACAAGTTCAATATAACATCACATGTAACCA
* * *
75002588 AATATACAAATTCAATATAATC-TCACATGTAATCG
1 AATATACAAGTTCAATATAA-CATCACATGTAACCA
** *
75002623 AATATACAAGTTCAATATAAGTTCACATGTAATCA
1 AATATACAAGTTCAATATAACATCACATGTAACCA
* * *
75002658 AATACACAAGTTCAATATAACCTCACATGTAGCCA
1 AATATACAAGTTCAATATAACATCACATGTAACCA
*
75002693 AATATACAAGTTCAATATAACCTCACAT
1 AATATACAAGTTCAATATAACATCACAT
75002721 ATACTTACCT
Statistics
Matches: 136, Mismatches: 30, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
35 135 0.99
36 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (35 bp):
AATATACAAGTTCAATATAACATCACATGTAACCA
Found at i:75002634 original size:105 final size:105
Alignment explanation
Indices: 75002516--75002720 Score: 248
Period size: 105 Copynumber: 2.0 Consensus size: 105
75002506 TTCATATGGC
* * * *** * *
75002516 CGAATATATAAGTTCAATATATCATCACATGTAACCTAATGTTCAAGTTTAATAAAACATCTCAT
1 CGAATATACAAGTTCAATATAACATCACATGTAACCAAATACACAAGTTCAATAAAACATCACAT
* * *
75002581 ATGGCCGAATATACAAATTCAATATAATCTCACATGTAAT
66 ATAGCCAAATATACAAATTCAATATAACCTCACATGTAAT
** * * *
75002621 CGAATATACAAGTTCAATATAAGTTCACATGTAATCAAATACACAAGTTCAATATAACCTCACAT
1 CGAATATACAAGTTCAATATAACATCACATGTAACCAAATACACAAGTTCAATAAAACATCACAT
* *
75002686 GTAGCCAAATATACAAGTTCAATATAACCTCACAT
66 ATAGCCAAATATACAAATTCAATATAACCTCACAT
75002721 ATACTTACCT
Statistics
Matches: 82, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
105 82 1.00
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (105 bp):
CGAATATACAAGTTCAATATAACATCACATGTAACCAAATACACAAGTTCAATAAAACATCACAT
ATAGCCAAATATACAAATTCAATATAACCTCACATGTAAT
Found at i:75003646 original size:28 final size:28
Alignment explanation
Indices: 75003573--75003635 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
75003563 CTCAAAATCT
*
75003573 TCAAAAGCTCAAATTCAAAACATGTCAA
1 TCAAAAGCTCAAATTTAAAACATGTCAA
75003601 TCAAAAGCTCAAATTTAAAACATGTCAA
1 TCAAAAGCTCAAATTTAAAACATGTCAA
75003629 TCTAAAA
1 TC-AAAA
75003636 CATATTTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 29 0.88
29 4 0.12
ACGTcount: A:0.51, C:0.19, G:0.06, T:0.24
Consensus pattern (28 bp):
TCAAAAGCTCAAATTTAAAACATGTCAA
Found at i:75025954 original size:9 final size:9
Alignment explanation
Indices: 75025940--75025964 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
75025930 GATCAAGTAA
75025940 AATTAAATT
1 AATTAAATT
75025949 AATTAAATT
1 AATTAAATT
75025958 AATTAAA
1 AATTAAA
75025965 ATAAATATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
AATTAAATT
Found at i:75026429 original size:11 final size:11
Alignment explanation
Indices: 75026380--75026432 Score: 51
Period size: 12 Copynumber: 5.1 Consensus size: 11
75026370 TAAATTTAAT
75026380 ATTTAAT-TTA
1 ATTTAATATTA
75026390 ATTTAATACTTA
1 ATTTAATA-TTA
* *
75026402 TTTTAATAGT-
1 ATTTAATATTA
75026412 A-TT-ATATTA
1 ATTTAATATTA
75026421 ATTTAATATTA
1 ATTTAATATTA
75026432 A
1 A
75026433 AGTAATTATC
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
8 4 0.12
9 3 0.09
10 9 0.26
11 8 0.24
12 10 0.29
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (11 bp):
ATTTAATATTA
Found at i:75026571 original size:58 final size:60
Alignment explanation
Indices: 75026448--75026563 Score: 150
Period size: 61 Copynumber: 2.0 Consensus size: 60
75026438 TTATCTTAAC
* * **
75026448 ATTAAATTTAATTTAATATTTATCTTATAGATAAATATTTTATTAATTTAATAAATTTCAT
1 ATTAAATTTAATCTAATATTTATCTTATAGATAAATATTATATTAATTTAAT-AATTAAAT
*
75026509 ATTAAATTTAATCTAATATTTATC-T-T-GATAAGTATTATATTAATTTAAT-ATTAAA
1 ATTAAATTTAATCTAATATTTATCTTATAGATAAATATTATATTAATTTAATAATTAAA
75026564 GTGATTAAGT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
56 4 0.08
58 21 0.42
59 1 0.02
60 1 0.02
61 23 0.46
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (60 bp):
ATTAAATTTAATCTAATATTTATCTTATAGATAAATATTATATTAATTTAATAATTAAAT
Done.