Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 220 of 373
Found at i:75050521 original size:5 final size:5
Alignment explanation
Indices: 75050511--75050612 Score: 127
Period size: 5 Copynumber: 19.6 Consensus size: 5
75050501 GTAATACTTA
*
75050511 TATAT TATAT TAT-T T-TAT GTATTAGT AATAGT TATAT ATTATAT TATAT
1 TATAT TATAT TATAT TATAT -TA-TA-T TATA-T TATAT --TATAT TATAT
75050560 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
75050610 TAT
1 TAT
75050613 CTTTGAAGTT
Statistics
Matches: 88, Mismatches: 2, Indels: 14
0.85 0.02 0.13
Matches are distributed among these distances:
3 1 0.01
4 3 0.03
5 68 0.77
6 7 0.08
7 8 0.09
8 1 0.01
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:75050538 original size:34 final size:33
Alignment explanation
Indices: 75050463--75050609 Score: 118
Period size: 30 Copynumber: 4.7 Consensus size: 33
75050453 TTTGTTATAA
*
75050463 TTTA-TATT-GTAATAATAATA-ATTATA-TAT
1 TTTATTATTAGTAATAATTATATATTATATTAT
* *
75050492 TATATT-TTAGTAATACTTATATATTATATTAT
1 TTTATTATTAGTAATAATTATATATTATATTAT
*
75050524 TTTATGTATTAGTAATAGTTATATATTATATTAT
1 TTTAT-TATTAGTAATAATTATATATTATATTAT
* *
75050558 ATTA-TATTA-T-ATTA-TATTATATTATATTAT
1 TTTATTATTAGTAATAATTA-TATATTATATTAT
* *
75050588 ATTA-TATTA-TATTATATTATAT
1 TTTATTATTAGTAATA-ATTATAT
75050610 TATCTTTGAA
Statistics
Matches: 98, Mismatches: 10, Indels: 17
0.78 0.08 0.14
Matches are distributed among these distances:
29 7 0.07
30 36 0.37
31 8 0.08
32 16 0.16
33 3 0.03
34 28 0.29
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.56
Consensus pattern (33 bp):
TTTATTATTAGTAATAATTATATATTATATTAT
Found at i:75050705 original size:16 final size:17
Alignment explanation
Indices: 75050684--75050716 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
75050674 ATAATTATAG
75050684 TATTAAA-AATATTTTA
1 TATTAAATAATATTTTA
75050700 TATTAAATTAATATTTT
1 TATTAAA-TAATATTTT
75050717 TAAAATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TATTAAATAATATTTTA
Found at i:75051482 original size:8 final size:8
Alignment explanation
Indices: 75051471--75051580 Score: 80
Period size: 8 Copynumber: 12.9 Consensus size: 8
75051461 AGAAAAATGT
75051471 TAAAAATA
1 TAAAAATA
75051479 TAAAATATTA
1 TAAAA-A-TA
75051489 TAAAAATTA
1 TAAAAA-TA
*
75051498 TAAAAAAA
1 TAAAAATA
*
75051506 TAAAAA-C
1 TAAAAATA
*
75051513 TAAAAATT
1 TAAAAATA
*
75051521 TAAATATA
1 TAAAAATA
75051529 T-AAAATA
1 TAAAAATA
75051536 TAAAAAATTA
1 T-AAAAA-TA
*
75051546 TATGAAATTA
1 TA--AAAATA
75051556 TATAAAATGA
1 TA-AAAAT-A
75051566 TAAAAATA
1 TAAAAATA
75051574 TAAAAAT
1 TAAAAAT
75051581 TATCATAATT
Statistics
Matches: 84, Mismatches: 9, Indels: 18
0.76 0.08 0.16
Matches are distributed among these distances:
7 12 0.14
8 27 0.32
9 25 0.30
10 17 0.20
11 3 0.04
ACGTcount: A:0.67, C:0.01, G:0.02, T:0.30
Consensus pattern (8 bp):
TAAAAATA
Found at i:75051499 original size:9 final size:9
Alignment explanation
Indices: 75051471--75051628 Score: 100
Period size: 10 Copynumber: 17.8 Consensus size: 9
75051461 AGAAAAATGT
75051471 TAAAAA-TA
1 TAAAAATTA
75051479 TAAAATATTA
1 TAAAA-ATTA
75051489 TAAAAATTA
1 TAAAAATTA
*
75051498 TAAAAA-AA
1 TAAAAATTA
*
75051506 TAAAAA--C
1 TAAAAATTA
75051513 TAAAAATT-
1 TAAAAATTA
*
75051521 TAAATA-TA
1 TAAAAATTA
75051529 T-AAAA-TA
1 TAAAAATTA
75051536 TAAAAAATTA
1 T-AAAAATTA
*
75051546 TATGAAATTA
1 TA-AAAATTA
*
75051556 TATAAAATGA
1 TA-AAAATTA
75051566 TAAAAA-TA
1 TAAAAATTA
75051574 TAAAAATTA
1 TAAAAATTA
* * *
75051583 TCATAATTTT
1 T-AAAAATTA
*
75051593 TAAAAAAATA
1 T-AAAAATTA
*
75051603 TAAAAGTTA
1 TAAAAATTA
75051612 TTAAAAATTA
1 -TAAAAATTA
75051622 TAAAAAT
1 TAAAAAT
75051629 AATTCTTTTG
Statistics
Matches: 119, Mismatches: 19, Indels: 23
0.74 0.12 0.14
Matches are distributed among these distances:
7 13 0.11
8 25 0.21
9 36 0.30
10 45 0.38
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (9 bp):
TAAAAATTA
Found at i:75051505 original size:38 final size:37
Alignment explanation
Indices: 75051405--75051507 Score: 100
Period size: 38 Copynumber: 2.7 Consensus size: 37
75051395 ACAAATTTAG
*
75051405 AAATTTATAAAATTTATAAAGAAAACTATAGAAAAATTA
1 AAATTTATAAAAATTATAAA-AAAA-TATAGAAAAATTA
* * * * * *
75051444 AAATTGAAAAAAATAATAGAAAAATGT-TAAAAATATA
1 AAATTTATAAAAATTATAAAAAAATATAGAAAAAT-TA
75051481 AAATATTATAAAAATTATAAAAAAATA
1 AAAT-TTATAAAAATTATAAAAAAATA
75051508 AAAACTAAAA
Statistics
Matches: 50, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
36 6 0.12
37 8 0.16
38 21 0.42
39 15 0.30
ACGTcount: A:0.66, C:0.01, G:0.05, T:0.28
Consensus pattern (37 bp):
AAATTTATAAAAATTATAAAAAAATATAGAAAAATTA
Found at i:75051606 original size:37 final size:36
Alignment explanation
Indices: 75051485--75051623 Score: 103
Period size: 37 Copynumber: 3.9 Consensus size: 36
75051475 AATATAAAAT
* * *
75051485 ATTATAAAAATTATAAAAAAATAAAAACTA-A--AA
1 ATTATAAAAAATATAAAAATATAAAAATTATATGAA
*
75051518 ATT-T-AAATATAT-AAAATATAAAAAATTATATGAA
1 ATTATAAAAAATATAAAAATAT-AAAAATTATATGAA
*
75051552 ATTATATAAAATGATAAAAATATAAAAATTATCAT-AA
1 ATTATAAAAAAT-ATAAAAATATAAAAATTAT-ATGAA
* * *
75051589 TTTTTAAAAAAATATAAAAGTTATTAAAAATTATA
1 ATTAT-AAAAAATATAAAA-ATA-TAAAAATTATA
75051624 AAAATAATTC
Statistics
Matches: 84, Mismatches: 10, Indels: 19
0.74 0.09 0.17
Matches are distributed among these distances:
30 6 0.07
31 13 0.15
32 2 0.02
33 3 0.04
34 5 0.06
35 1 0.01
36 4 0.05
37 22 0.26
38 18 0.21
39 10 0.12
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.33
Consensus pattern (36 bp):
ATTATAAAAAATATAAAAATATAAAAATTATATGAA
Found at i:75051625 original size:29 final size:29
Alignment explanation
Indices: 75051530--75051627 Score: 78
Period size: 29 Copynumber: 3.4 Consensus size: 29
75051520 TTAAATATAT
* *
75051530 AAAA-TATAAAAAATTATATGAAATTAT-A
1 AAAATTATAAAAAAATATA-AAAATTATCA
*
75051558 TAAAATGAT--AAAAATATAAAAATTATCA
1 -AAAATTATAAAAAAATATAAAAATTATCA
* * * * *
75051586 TAATTTTTAAAAAAATATAAAAGTTATTA
1 AAAATTATAAAAAAATATAAAAATTATCA
75051615 AAAATTATAAAAA
1 AAAATTATAAAAA
75051628 TAATTCTTTT
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
27 11 0.21
28 9 0.17
29 31 0.58
30 2 0.04
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (29 bp):
AAAATTATAAAAAAATATAAAAATTATCA
Found at i:75051627 original size:20 final size:18
Alignment explanation
Indices: 75051471--75051628 Score: 100
Period size: 19 Copynumber: 8.9 Consensus size: 18
75051461 AGAAAAATGT
75051471 TAAAAA-TATAAAATATTA
1 TAAAAATTATAAAA-ATTA
*
75051489 TAAAAATTATAAAAA-AA
1 TAAAAATTATAAAAATTA
*
75051506 TAAAAA--CTAAAAATT-
1 TAAAAATTATAAAAATTA
*
75051521 TAAATA-TAT-AAAA-TA
1 TAAAAATTATAAAAATTA
*
75051536 TAAAAAATTATATGAAATTA
1 T-AAAAATTATA-AAAATTA
*
75051556 TATAAAATGATAAAAA-TA
1 TA-AAAATTATAAAAATTA
* * *
75051574 TAAAAATTATCATAATTTT
1 TAAAAATTAT-AAAAATTA
* *
75051593 TAAAAAAATATAAAAGTTA
1 T-AAAAATTATAAAAATTA
75051612 TTAAAAATTATAAAAAT
1 -TAAAAATTATAAAAAT
75051629 AATTCTTTTG
Statistics
Matches: 107, Mismatches: 19, Indels: 27
0.70 0.12 0.18
Matches are distributed among these distances:
14 1 0.01
15 16 0.15
16 5 0.05
17 17 0.16
18 14 0.13
19 34 0.32
20 20 0.19
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (18 bp):
TAAAAATTATAAAAATTA
Found at i:75055397 original size:27 final size:27
Alignment explanation
Indices: 75055356--75055474 Score: 116
Period size: 27 Copynumber: 4.4 Consensus size: 27
75055346 GGATAAGTTG
*
75055356 TAGAATTACCGAAATA-CCTCTGTAGGA
1 TAGAATTACCAAAATACCCT-TGTAGGA
*
75055383 TAGAATTACCAAAATACCCTTGTAGGG
1 TAGAATTACCAAAATACCCTTGTAGGA
*
75055410 TAGAAATACCAAAATACCCTTGTAAGG-
1 TAGAATTACCAAAATACCCTTGT-AGGA
* * * * * *
75055437 TAGAATCACCGAGATATCCTTGTGGGG
1 TAGAATTACCAAAATACCCTTGTAGGA
*
75055464 TAAAATTACCA
1 TAGAATTACCA
75055475 TTTTGCCCCT
Statistics
Matches: 77, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
26 2 0.03
27 69 0.90
28 6 0.08
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (27 bp):
TAGAATTACCAAAATACCCTTGTAGGA
Found at i:75055441 original size:54 final size:54
Alignment explanation
Indices: 75055355--75055474 Score: 129
Period size: 54 Copynumber: 2.2 Consensus size: 54
75055345 TGGATAAGTT
* * *
75055355 GTAGAATTACCGAAATACCTCTGTAGGATAGAATTACCAAAATACCCTTGTAGG
1 GTAGAAATACCAAAATACCTCTGTAGGATAGAATCACCAAAATACCCTTGTAGG
* * * *
75055409 GTAGAAATACCAAAATACC-CTTGTAAGG-TAGAATCACCGAGATATCCTTGTGGG
1 GTAGAAATACCAAAATACCTC-TGT-AGGATAGAATCACCAAAATACCCTTGTAGG
75055463 GTA-AAATTACCA
1 GTAGAAA-TACCA
75055475 TTTTGCCCCT
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
53 4 0.07
54 49 0.88
55 3 0.05
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (54 bp):
GTAGAAATACCAAAATACCTCTGTAGGATAGAATCACCAAAATACCCTTGTAGG
Found at i:75056156 original size:27 final size:26
Alignment explanation
Indices: 75056112--75056163 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
75056102 CTCGCTGCAA
*
75056112 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
75056139 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
75056164 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:75059319 original size:27 final size:27
Alignment explanation
Indices: 75059289--75059539 Score: 236
Period size: 27 Copynumber: 9.3 Consensus size: 27
75059279 TTAGTTTACC
75059289 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
75059316 AAATTACTAAAATACTCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75059343 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
75059370 AAATTATCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
75059397 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
75059424 GAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** **
75059451 AAATTACTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*** * **
75059478 AAATTATTGAAATA-CCTTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* * *
75059505 AAATTACCAAAGTACCCCTGATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75059532 GAATTACC
1 AAATTACC
75059540 GATTTACCCT
Statistics
Matches: 186, Mismatches: 36, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 4 0.02
27 179 0.96
28 3 0.02
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:75059547 original size:27 final size:28
Alignment explanation
Indices: 75059517--75059685 Score: 197
Period size: 27 Copynumber: 6.2 Consensus size: 28
75059507 ATTACCAAAG
* *
75059517 TACCCCT-GATTTATAGAATTACCGATT
1 TACCCCTCGATTTACAGAATTACCGTTT
75059544 TA-CCCTCGATTTACAGAATTACCGTTT
1 TACCCCTCGATTTACAGAATTACCGTTT
* *
75059571 TA-CCCTTGATTTACAGAATTACTGTTT
1 TACCCCTCGATTTACAGAATTACCGTTT
75059598 TA-CCCTCGATTTACAGAATTACCGTTT
1 TACCCCTCGATTTACAGAATTACCGTTT
* * *
75059625 TA-CCCGCGATTTATAGAATTATCGTTT
1 TACCCCTCGATTTACAGAATTACCGTTT
* * * *
75059652 TA-ACCTCGATTTATAAAATTACCATTT
1 TACCCCTCGATTTACAGAATTACCGTTT
75059679 TACCCCT
1 TACCCCT
75059686 AGGTGTTAAA
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
26 4 0.03
27 118 0.94
28 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (28 bp):
TACCCCTCGATTTACAGAATTACCGTTT
Found at i:75059575 original size:54 final size:54
Alignment explanation
Indices: 75059517--75059685 Score: 241
Period size: 54 Copynumber: 3.1 Consensus size: 54
75059507 ATTACCAAAG
*
75059517 TACCCCTGATTTATAGAATTACCGATTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCCTGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
* * *
75059571 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCCTGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
* * * * *
75059625 TACCCGC-GATTTATAGAATTATCGTTTTAACCTCGATTTATAAAATTACCATTT
1 TACCC-CTGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
75059679 TACCCCT
1 TACCCCT
75059686 AGGTGTTAAA
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 100 0.99
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (54 bp):
TACCCCTGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:75059680 original size:81 final size:80
Alignment explanation
Indices: 75059520--75059683 Score: 220
Period size: 81 Copynumber: 2.0 Consensus size: 80
75059510 ACCAAAGTAC
* * * *
75059520 CCCTGATTTATAGAATTACCGATTTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTTAC
1 CCCTGATTTACAGAATTACCGATTTACCCGCGATTTACAGAATTACCGTTTTAACCTCGATTTAC
* **
75059585 AGAATTACTGTTTTA
66 AAAATTACCATTTTA
* * *
75059600 CCCTCGATTTACAGAATTACCGTTTTACCCGCGATTTATAGAATTATCGTTTTAACCTCGATTTA
1 CCCT-GATTTACAGAATTACCGATTTACCCGCGATTTACAGAATTACCGTTTTAACCTCGATTTA
*
75059665 TAAAATTACCATTTTA
65 CAAAATTACCATTTTA
75059681 CCC
1 CCC
75059684 CTAGGTGTTA
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 4 0.06
81 68 0.94
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (80 bp):
CCCTGATTTACAGAATTACCGATTTACCCGCGATTTACAGAATTACCGTTTTAACCTCGATTTAC
AAAATTACCATTTTA
Found at i:75060058 original size:27 final size:26
Alignment explanation
Indices: 75060017--75060076 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
75060007 ATATATAAAT
*
75060017 ATATCTGTTCTGGTGACCTAGCCACA
1 ATATCTGATCTGGTGACCTAGCCACA
* * *
75060043 ATATCTGAATCTGGTGACTTTGTCACA
1 ATATCTG-ATCTGGTGACCTAGCCACA
75060070 ATATCTG
1 ATATCTG
75060077 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (26 bp):
ATATCTGATCTGGTGACCTAGCCACA
Found at i:75060230 original size:31 final size:31
Alignment explanation
Indices: 75060195--75060273 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
75060185 TTGCATTCAC
* *
75060195 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
* * *
75060226 ATTCTGATTCTGATTTTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
75060257 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
75060274 AGTTCTGATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTA
Found at i:75060237 original size:6 final size:6
Alignment explanation
Indices: 75060195--75060282 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
75060185 TTGCATTCAC
* * * *
75060195 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTA ATTCTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
75060244 -TCACCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
75060283 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:75062054 original size:8 final size:8
Alignment explanation
Indices: 75062041--75062082 Score: 57
Period size: 8 Copynumber: 5.0 Consensus size: 8
75062031 TGTGGGCCCA
75062041 ATGGGCCT
1 ATGGGCCT
*
75062049 ATGGGCCCA
1 ATGGG-CCT
75062058 ATGGGCCT
1 ATGGGCCT
75062066 ATGGGCCT
1 ATGGGCCT
75062074 AATGGGCCT
1 -ATGGGCCT
75062083 TGTGGGCCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
8 15 0.50
9 15 0.50
ACGTcount: A:0.17, C:0.26, G:0.36, T:0.21
Consensus pattern (8 bp):
ATGGGCCT
Found at i:75062055 original size:17 final size:17
Alignment explanation
Indices: 75062033--75062094 Score: 97
Period size: 17 Copynumber: 3.6 Consensus size: 17
75062023 AGGGGCCATG
75062033 TGGGCCCAATGGGCCTA
1 TGGGCCCAATGGGCCTA
75062050 TGGGCCCAATGGGCCTA
1 TGGGCCCAATGGGCCTA
* *
75062067 TGGGCCTAATGGGCCTTG
1 TGGGCCCAATGGGCC-TA
75062085 TGGGCCCAAT
1 TGGGCCCAAT
75062095 TGGATAAGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
17 31 0.76
18 10 0.24
ACGTcount: A:0.16, C:0.27, G:0.35, T:0.21
Consensus pattern (17 bp):
TGGGCCCAATGGGCCTA
Found at i:75062082 original size:9 final size:9
Alignment explanation
Indices: 75062033--75062082 Score: 68
Period size: 9 Copynumber: 5.8 Consensus size: 9
75062023 AGGGGCCATG
*
75062033 TGGGCCCAA
1 TGGGCCTAA
75062042 TGGGCCT-A
1 TGGGCCTAA
*
75062050 TGGGCCCAA
1 TGGGCCTAA
75062059 TGGGCCT-A
1 TGGGCCTAA
75062067 TGGGCCTAA
1 TGGGCCTAA
75062076 TGGGCCT
1 TGGGCCT
75062083 TGTGGGCCCA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
8 15 0.42
9 21 0.58
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.20
Consensus pattern (9 bp):
TGGGCCTAA
Found at i:75062296 original size:27 final size:27
Alignment explanation
Indices: 75062266--75062516 Score: 236
Period size: 27 Copynumber: 9.3 Consensus size: 27
75062256 TTAGTTTACC
75062266 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
75062293 AAATTACTAAAATACTCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75062320 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
75062347 AAATTATCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
75062374 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
75062401 GAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** **
75062428 AAATTACTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*** * **
75062455 AAATTATTGAAATA-CCTTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* * *
75062482 AAATTACCAAAGTACCCCTGATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75062509 GAATTACC
1 AAATTACC
75062517 GATTTACCCT
Statistics
Matches: 186, Mismatches: 36, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 4 0.02
27 179 0.96
28 3 0.02
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:75062524 original size:27 final size:28
Alignment explanation
Indices: 75062494--75062662 Score: 197
Period size: 27 Copynumber: 6.2 Consensus size: 28
75062484 ATTACCAAAG
* *
75062494 TACCCCT-GATTTATAGAATTACCGATT
1 TACCCCTCGATTTACAGAATTACCGTTT
75062521 TA-CCCTCGATTTACAGAATTACCGTTT
1 TACCCCTCGATTTACAGAATTACCGTTT
* *
75062548 TA-CCCTTGATTTACAGAATTACTGTTT
1 TACCCCTCGATTTACAGAATTACCGTTT
75062575 TA-CCCTCGATTTACAGAATTACCGTTT
1 TACCCCTCGATTTACAGAATTACCGTTT
* * *
75062602 TA-CCCGCGATTTATAGAATTATCGTTT
1 TACCCCTCGATTTACAGAATTACCGTTT
* * * *
75062629 TA-ACCTCGATTTATAAAATTACCATTT
1 TACCCCTCGATTTACAGAATTACCGTTT
75062656 TACCCCT
1 TACCCCT
75062663 AGGTGTTAAA
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
26 4 0.03
27 118 0.94
28 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (28 bp):
TACCCCTCGATTTACAGAATTACCGTTT
Found at i:75062552 original size:54 final size:54
Alignment explanation
Indices: 75062494--75062662 Score: 241
Period size: 54 Copynumber: 3.1 Consensus size: 54
75062484 ATTACCAAAG
*
75062494 TACCCCTGATTTATAGAATTACCGATTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCCTGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
* * *
75062548 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCCTGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
* * * * *
75062602 TACCCGC-GATTTATAGAATTATCGTTTTAACCTCGATTTATAAAATTACCATTT
1 TACCC-CTGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
75062656 TACCCCT
1 TACCCCT
75062663 AGGTGTTAAA
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 100 0.99
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (54 bp):
TACCCCTGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:75062657 original size:81 final size:80
Alignment explanation
Indices: 75062497--75062660 Score: 220
Period size: 81 Copynumber: 2.0 Consensus size: 80
75062487 ACCAAAGTAC
* * * *
75062497 CCCTGATTTATAGAATTACCGATTTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTTAC
1 CCCTGATTTACAGAATTACCGATTTACCCGCGATTTACAGAATTACCGTTTTAACCTCGATTTAC
* **
75062562 AGAATTACTGTTTTA
66 AAAATTACCATTTTA
* * *
75062577 CCCTCGATTTACAGAATTACCGTTTTACCCGCGATTTATAGAATTATCGTTTTAACCTCGATTTA
1 CCCT-GATTTACAGAATTACCGATTTACCCGCGATTTACAGAATTACCGTTTTAACCTCGATTTA
*
75062642 TAAAATTACCATTTTA
65 CAAAATTACCATTTTA
75062658 CCC
1 CCC
75062661 CTAGGTGTTA
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 4 0.06
81 68 0.94
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (80 bp):
CCCTGATTTACAGAATTACCGATTTACCCGCGATTTACAGAATTACCGTTTTAACCTCGATTTAC
AAAATTACCATTTTA
Found at i:75063035 original size:27 final size:26
Alignment explanation
Indices: 75062994--75063053 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
75062984 ATATATAAAT
*
75062994 ATATCTGTTCTGGTGACCTAGCCACA
1 ATATCTGATCTGGTGACCTAGCCACA
* * *
75063020 ATATCTGAATCTGGTGACTTTGTCACA
1 ATATCTG-ATCTGGTGACCTAGCCACA
75063047 ATATCTG
1 ATATCTG
75063054 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (26 bp):
ATATCTGATCTGGTGACCTAGCCACA
Found at i:75063207 original size:31 final size:31
Alignment explanation
Indices: 75063172--75063250 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
75063162 TTGCATTCAC
* *
75063172 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
* * *
75063203 ATTCTGATTCTGATTTTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
75063234 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
75063251 AGTTCTGATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTA
Found at i:75063214 original size:6 final size:6
Alignment explanation
Indices: 75063172--75063259 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
75063162 TTGCATTCAC
* * * *
75063172 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTA ATTCTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
75063221 -TCACCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
75063260 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:75065033 original size:8 final size:8
Alignment explanation
Indices: 75065020--75065061 Score: 57
Period size: 8 Copynumber: 5.0 Consensus size: 8
75065010 TGTGGGCCCA
75065020 ATGGGCCT
1 ATGGGCCT
*
75065028 ATGGGCCCA
1 ATGGG-CCT
75065037 ATGGGCCT
1 ATGGGCCT
75065045 ATGGGCCT
1 ATGGGCCT
75065053 AATGGGCCT
1 -ATGGGCCT
75065062 TGTGGGCCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
8 15 0.50
9 15 0.50
ACGTcount: A:0.17, C:0.26, G:0.36, T:0.21
Consensus pattern (8 bp):
ATGGGCCT
Found at i:75065034 original size:17 final size:17
Alignment explanation
Indices: 75065012--75065073 Score: 97
Period size: 17 Copynumber: 3.6 Consensus size: 17
75065002 AGGGGCCATG
75065012 TGGGCCCAATGGGCCTA
1 TGGGCCCAATGGGCCTA
75065029 TGGGCCCAATGGGCCTA
1 TGGGCCCAATGGGCCTA
* *
75065046 TGGGCCTAATGGGCCTTG
1 TGGGCCCAATGGGCC-TA
75065064 TGGGCCCAAT
1 TGGGCCCAAT
75065074 TGGATAAGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
17 31 0.76
18 10 0.24
ACGTcount: A:0.16, C:0.27, G:0.35, T:0.21
Consensus pattern (17 bp):
TGGGCCCAATGGGCCTA
Found at i:75065061 original size:9 final size:9
Alignment explanation
Indices: 75065012--75065061 Score: 68
Period size: 9 Copynumber: 5.8 Consensus size: 9
75065002 AGGGGCCATG
*
75065012 TGGGCCCAA
1 TGGGCCTAA
75065021 TGGGCCT-A
1 TGGGCCTAA
*
75065029 TGGGCCCAA
1 TGGGCCTAA
75065038 TGGGCCT-A
1 TGGGCCTAA
75065046 TGGGCCTAA
1 TGGGCCTAA
75065055 TGGGCCT
1 TGGGCCT
75065062 TGTGGGCCCA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
8 15 0.42
9 21 0.58
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.20
Consensus pattern (9 bp):
TGGGCCTAA
Found at i:75065275 original size:27 final size:27
Alignment explanation
Indices: 75065245--75065495 Score: 236
Period size: 27 Copynumber: 9.3 Consensus size: 27
75065235 TTAGTTTACC
75065245 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
75065272 AAATTACTAAAATACTCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75065299 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
75065326 AAATTATCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
75065353 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
75065380 GAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** **
75065407 AAATTACTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*** * **
75065434 AAATTATTGAAATA-CCTTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* * *
75065461 AAATTACCAAAGTACCCCTGATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75065488 GAATTACC
1 AAATTACC
75065496 GATTTACCCT
Statistics
Matches: 186, Mismatches: 36, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 4 0.02
27 179 0.96
28 3 0.02
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:75065503 original size:27 final size:28
Alignment explanation
Indices: 75065473--75065641 Score: 197
Period size: 27 Copynumber: 6.2 Consensus size: 28
75065463 ATTACCAAAG
* *
75065473 TACCCCT-GATTTATAGAATTACCGATT
1 TACCCCTCGATTTACAGAATTACCGTTT
75065500 TA-CCCTCGATTTACAGAATTACCGTTT
1 TACCCCTCGATTTACAGAATTACCGTTT
* *
75065527 TA-CCCTTGATTTACAGAATTACTGTTT
1 TACCCCTCGATTTACAGAATTACCGTTT
75065554 TA-CCCTCGATTTACAGAATTACCGTTT
1 TACCCCTCGATTTACAGAATTACCGTTT
* * *
75065581 TA-CCCGCGATTTATAGAATTATCGTTT
1 TACCCCTCGATTTACAGAATTACCGTTT
* * * *
75065608 TA-ACCTCGATTTATAAAATTACCATTT
1 TACCCCTCGATTTACAGAATTACCGTTT
75065635 TACCCCT
1 TACCCCT
75065642 AGGTGTTAAA
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
26 4 0.03
27 118 0.94
28 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (28 bp):
TACCCCTCGATTTACAGAATTACCGTTT
Found at i:75065531 original size:54 final size:54
Alignment explanation
Indices: 75065473--75065641 Score: 241
Period size: 54 Copynumber: 3.1 Consensus size: 54
75065463 ATTACCAAAG
*
75065473 TACCCCTGATTTATAGAATTACCGATTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCCTGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
* * *
75065527 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCCTGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
* * * * *
75065581 TACCCGC-GATTTATAGAATTATCGTTTTAACCTCGATTTATAAAATTACCATTT
1 TACCC-CTGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
75065635 TACCCCT
1 TACCCCT
75065642 AGGTGTTAAA
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 100 0.99
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (54 bp):
TACCCCTGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:75065636 original size:81 final size:80
Alignment explanation
Indices: 75065476--75065639 Score: 220
Period size: 81 Copynumber: 2.0 Consensus size: 80
75065466 ACCAAAGTAC
* * * *
75065476 CCCTGATTTATAGAATTACCGATTTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATTTAC
1 CCCTGATTTACAGAATTACCGATTTACCCGCGATTTACAGAATTACCGTTTTAACCTCGATTTAC
* **
75065541 AGAATTACTGTTTTA
66 AAAATTACCATTTTA
* * *
75065556 CCCTCGATTTACAGAATTACCGTTTTACCCGCGATTTATAGAATTATCGTTTTAACCTCGATTTA
1 CCCT-GATTTACAGAATTACCGATTTACCCGCGATTTACAGAATTACCGTTTTAACCTCGATTTA
*
75065621 TAAAATTACCATTTTA
65 CAAAATTACCATTTTA
75065637 CCC
1 CCC
75065640 CTAGGTGTTA
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 4 0.06
81 68 0.94
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (80 bp):
CCCTGATTTACAGAATTACCGATTTACCCGCGATTTACAGAATTACCGTTTTAACCTCGATTTAC
AAAATTACCATTTTA
Found at i:75066014 original size:27 final size:26
Alignment explanation
Indices: 75065973--75066032 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
75065963 ATATATAAAT
*
75065973 ATATCTGTTCTGGTGACCTAGCCACA
1 ATATCTGATCTGGTGACCTAGCCACA
* * *
75065999 ATATCTGAATCTGGTGACTTTGTCACA
1 ATATCTG-ATCTGGTGACCTAGCCACA
75066026 ATATCTG
1 ATATCTG
75066033 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (26 bp):
ATATCTGATCTGGTGACCTAGCCACA
Found at i:75066186 original size:31 final size:31
Alignment explanation
Indices: 75066151--75066229 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
75066141 TTGCATTCAC
* *
75066151 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
* * *
75066182 ATTCTGATTCTGATTTTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
75066213 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
75066230 AGTTCTGATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTA
Found at i:75066193 original size:6 final size:6
Alignment explanation
Indices: 75066151--75066238 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
75066141 TTGCATTCAC
* * * *
75066151 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTA ATTCTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
75066200 -TCACCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
75066239 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:75068003 original size:9 final size:9
Alignment explanation
Indices: 75067963--75068039 Score: 59
Period size: 9 Copynumber: 8.6 Consensus size: 9
75067953 TGGCTACTTC
75067963 GGGCCACAAT
1 GGGCC-CAAT
* *
75067973 GGGCCGAAA
1 GGGCCCAAT
* *
75067982 GGGGCCATGT
1 GGGCCCA-AT
75067992 GGGCCCAAT
1 GGGCCCAAT
*
75068001 GGG-CCTAT
1 GGGCCCAAT
75068009 GGGCCCAAT
1 GGGCCCAAT
*
75068018 GGG-CCTAT
1 GGGCCCAAT
*
75068026 GGGCCTAAT
1 GGGCCCAAT
75068035 GGGCC
1 GGGCC
75068040 TTGTGGGCCC
Statistics
Matches: 51, Mismatches: 13, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
8 14 0.27
9 26 0.51
10 11 0.22
ACGTcount: A:0.19, C:0.27, G:0.39, T:0.14
Consensus pattern (9 bp):
GGGCCCAAT
Found at i:75068012 original size:8 final size:8
Alignment explanation
Indices: 75067999--75068040 Score: 57
Period size: 8 Copynumber: 5.0 Consensus size: 8
75067989 TGTGGGCCCA
75067999 ATGGGCCT
1 ATGGGCCT
*
75068007 ATGGGCCCA
1 ATGGG-CCT
75068016 ATGGGCCT
1 ATGGGCCT
75068024 ATGGGCCT
1 ATGGGCCT
75068032 AATGGGCCT
1 -ATGGGCCT
75068041 TGTGGGCCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
8 15 0.50
9 15 0.50
ACGTcount: A:0.17, C:0.26, G:0.36, T:0.21
Consensus pattern (8 bp):
ATGGGCCT
Found at i:75068013 original size:17 final size:17
Alignment explanation
Indices: 75067991--75068052 Score: 97
Period size: 17 Copynumber: 3.6 Consensus size: 17
75067981 AGGGGCCATG
75067991 TGGGCCCAATGGGCCTA
1 TGGGCCCAATGGGCCTA
75068008 TGGGCCCAATGGGCCTA
1 TGGGCCCAATGGGCCTA
* *
75068025 TGGGCCTAATGGGCCTTG
1 TGGGCCCAATGGGCC-TA
75068043 TGGGCCCAAT
1 TGGGCCCAAT
75068053 TGGATAAGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
17 31 0.76
18 10 0.24
ACGTcount: A:0.16, C:0.27, G:0.35, T:0.21
Consensus pattern (17 bp):
TGGGCCCAATGGGCCTA
Found at i:75068040 original size:9 final size:9
Alignment explanation
Indices: 75067991--75068040 Score: 68
Period size: 9 Copynumber: 5.8 Consensus size: 9
75067981 AGGGGCCATG
*
75067991 TGGGCCCAA
1 TGGGCCTAA
75068000 TGGGCCT-A
1 TGGGCCTAA
*
75068008 TGGGCCCAA
1 TGGGCCTAA
75068017 TGGGCCT-A
1 TGGGCCTAA
75068025 TGGGCCTAA
1 TGGGCCTAA
75068034 TGGGCCT
1 TGGGCCT
75068041 TGTGGGCCCA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
8 15 0.42
9 21 0.58
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.20
Consensus pattern (9 bp):
TGGGCCTAA
Found at i:75068288 original size:27 final size:27
Alignment explanation
Indices: 75068224--75068474 Score: 218
Period size: 27 Copynumber: 9.3 Consensus size: 27
75068214 TCAGTTTACC
*
75068224 AAATTACCAAAATACCC-TAATTTGTA
1 AAATTACCAAAATACCCTTAGTTTGTA
* * * *
75068250 AAATTACTAAAATACCCTTGGTTTATG
1 AAATTACCAAAATACCCTTAGTTTGTA
* * *
75068277 AAATCACCAAAATACCCCTATTTTGTA
1 AAATTACCAAAATACCCTTAGTTTGTA
* **
75068304 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTAGTTTGTA
*
75068331 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTAGTTTGTA
* * *
75068358 AAATTACCAAAATAACCTTAATTTGTG
1 AAATTACCAAAATACCCTTAGTTTGTA
* * **
75068385 AAATTACTAAAATACCC-TCGACCTGTA
1 AAATTACCAAAATACCCTTAG-TTTGTA
** * **
75068412 AAATTATTAAAATACCCTCAACTTGTA
1 AAATTACCAAAATACCCTTAGTTTGTA
* * * *
75068439 AAATTACCAAAGTACCCCTAATTTATA
1 AAATTACCAAAATACCCTTAGTTTGTA
*
75068466 GAATTACCA
1 AAATTACCA
75068475 TTTTACCTTC
Statistics
Matches: 176, Mismatches: 46, Indels: 5
0.78 0.20 0.02
Matches are distributed among these distances:
26 17 0.10
27 159 0.90
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTAGTTTGTA
Found at i:75068309 original size:54 final size:53
Alignment explanation
Indices: 75068224--75068474 Score: 243
Period size: 54 Copynumber: 4.7 Consensus size: 53
75068214 TCAGTTTACC
*
75068224 AAATTACCAAAATA-CCCTAATTTGTAAAATTACTAAAATACCCTTGGTTTATG
1 AAATTACCAAAATACCCCT-ATTTGTAAAATTACCAAAATACCCTTGGTTTATG
* **
75068277 AAATCACCAAAATACCCCTATTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTA-TTTGTAAAATTACCAAAATACCCTTGGTTTATG
* ** *
75068331 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATAACCTTAATTTGTG
1 AAATTACCAAAATACCCCTA-TTTGTAAAATTACCAAAATACCCTTGGTTTATG
* * ** ** **** * *
75068385 AAATTACTAAAATACCCTCGACCTGTAAAATTATTAAAATACCCTCAACTTGTA
1 AAATTACCAAAATACCC-CTATTTGTAAAATTACCAAAATACCCTTGGTTTATG
* * *
75068439 AAATTACCAAAGTACCCCTAATTTATAGAATTACCA
1 AAATTACCAAAATACCCCT-ATTTGTAAAATTACCA
75068475 TTTTACCTTC
Statistics
Matches: 163, Mismatches: 31, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
53 15 0.09
54 146 0.90
55 2 0.01
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.31
Consensus pattern (53 bp):
AAATTACCAAAATACCCCTATTTGTAAAATTACCAAAATACCCTTGGTTTATG
Found at i:75068367 original size:81 final size:81
Alignment explanation
Indices: 75068224--75068474 Score: 263
Period size: 81 Copynumber: 3.1 Consensus size: 81
75068214 TCAGTTTACC
* * * * * *
75068224 AAATTACCAAAATACCC-TAATTTGTAAAATTACTAAAATACCCTTGGTTTATGAAATCACCAAA
1 AAATTACCAAAATACCCTTGATTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAA
*
75068288 ATACCCCTATTTTGTA
66 ATACCCCTAATTTGTA
* ** *
75068304 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTTGATTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAA
* * *
75068369 ATAACCTTAATTTGTG
66 ATACCCCTAATTTGTA
* * ** * **
75068385 AAATTACTAAAATACCCTCGACCTGTAAAATTATTAAAATA-CCCTCAACTTGTAAAATTACCAA
1 AAATTACCAAAATACCCTTGATTTGTAAAATTACTAAAATACCCCT-AGTTTGTAAAATTACCAA
* *
75068449 AGTACCCCTAATTTATA
65 AATACCCCTAATTTGTA
*
75068466 GAATTACCA
1 AAATTACCA
75068475 TTTTACCTTC
Statistics
Matches: 137, Mismatches: 32, Indels: 3
0.80 0.19 0.02
Matches are distributed among these distances:
80 21 0.15
81 116 0.85
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCTTGATTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAA
ATACCCCTAATTTGTA
Found at i:75068481 original size:27 final size:27
Alignment explanation
Indices: 75068459--75068698 Score: 273
Period size: 27 Copynumber: 8.9 Consensus size: 27
75068449 AGTACCCCTA
* * *
75068459 ATTTATAGAATTACCATTTTACCTTCC
1 ATTTATAAAATTACCATTTTACCCTCG
* *
75068486 ATTTACAAAATTACCGTTTTACCCTCG
1 ATTTATAAAATTACCATTTTACCCTCG
** *
75068513 ATTTATAAAATTATTATTTTACCCGCG
1 ATTTATAAAATTACCATTTTACCCTCG
* *
75068540 ATTTATAGAATTACCATTTTACCCTCA
1 ATTTATAAAATTACCATTTTACCCTCG
* * *
75068567 ATTTACAAAATTACTATTTTATCCTCG
1 ATTTATAAAATTACCATTTTACCCTCG
* * *
75068594 ATTTACAAAATTACTATTTTTCCCTCG
1 ATTTATAAAATTACCATTTTACCCTCG
* **
75068621 ATTTATAGAATTACTGTTTTACCCTCG
1 ATTTATAAAATTACCATTTTACCCTCG
* * * *
75068648 ATTTACAGAATTACCGTTTTACCCTCA
1 ATTTATAAAATTACCATTTTACCCTCG
75068675 ATTTATAAAATTACCATTTTACCC
1 ATTTATAAAATTACCATTTTACCC
75068699 CTAGGGTGTT
Statistics
Matches: 181, Mismatches: 32, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 181 1.00
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.42
Consensus pattern (27 bp):
ATTTATAAAATTACCATTTTACCCTCG
Found at i:75068509 original size:54 final size:54
Alignment explanation
Indices: 75068454--75068698 Score: 303
Period size: 54 Copynumber: 4.6 Consensus size: 54
75068444 ACCAAAGTAC
* * * * *
75068454 CCCT-AATTTATAGAATTACCATTTTACCTTCCATTTACAAAATTACCGTTTTA
1 CCCTCAATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTA
* * * * *
75068507 CCCTCGATTTATAAAATTATTATTTTACCCGCGATTTATAGAATTACCATTTTA
1 CCCTCAATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTA
* * * *
75068561 CCCTCAATTTACAAAATTACTATTTTATCCTCGATTTACAAAATTACTATTTTT
1 CCCTCAATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTA
* * * * *
75068615 CCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCAATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTA
*
75068669 CCCTCAATTTATAAAATTACCATTTTACCC
1 CCCTCAATTTATAAAATTACTATTTTACCC
75068699 CTAGGGTGTT
Statistics
Matches: 159, Mismatches: 32, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
53 4 0.03
54 155 0.97
ACGTcount: A:0.31, C:0.22, G:0.05, T:0.42
Consensus pattern (54 bp):
CCCTCAATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTA
Found at i:75068509 original size:81 final size:81
Alignment explanation
Indices: 75068424--75068700 Score: 306
Period size: 81 Copynumber: 3.4 Consensus size: 81
75068414 ATTATTAAAA
* * ** * * *
75068424 TACCCTCAACTTGTAAAATTACCAAAGTACCCCTAATTTATAGAATTACCATTTTACCTTCCATT
1 TACCCTCAATTTATAAAATTACCAATTTACCCCTGATTTATAGAATTACCATTTTACCCTCAATT
75068489 TACAAAATTACCGTTT
66 TACAAAATTACCGTTT
* ** *
75068505 TACCCTCGATTTATAAAATTATTATTTTACCCGC-GATTTATAGAATTACCATTTTACCCTCAAT
1 TACCCTCAATTTATAAAATTACCAATTTACCC-CTGATTTATAGAATTACCATTTTACCCTCAAT
**
75068569 TTACAAAATTACTATTT
65 TTACAAAATTACCGTTT
* * * * ** ** *
75068586 TATCCTCGATTTACAAAATTA-CTATTTTTCCCTCGATTTATAGAATTACTGTTTTACCCTCGAT
1 TACCCTCAATTTATAAAATTACCAATTTACCCCT-GATTTATAGAATTACCATTTTACCCTCAAT
*
75068650 TTACAGAATTACCGTTT
65 TTACAAAATTACCGTTT
*
75068667 TACCCTCAATTTATAAAATTACCATTTTACCCCT
1 TACCCTCAATTTATAAAATTACCAATTTACCCCT
75068701 AGGGTGTTAA
Statistics
Matches: 159, Mismatches: 33, Indels: 7
0.80 0.17 0.04
Matches are distributed among these distances:
79 1 0.01
80 5 0.03
81 144 0.91
82 9 0.06
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.40
Consensus pattern (81 bp):
TACCCTCAATTTATAAAATTACCAATTTACCCCTGATTTATAGAATTACCATTTTACCCTCAATT
TACAAAATTACCGTTT
Found at i:75068721 original size:81 final size:81
Alignment explanation
Indices: 75068459--75068698 Score: 311
Period size: 81 Copynumber: 3.0 Consensus size: 81
75068449 AGTACCCCTA
** * *
75068459 ATTTATAGAATTACCATTTTACCTTCCATTTACAAAATTACCGTTTTACCCTCGATTTATAAAAT
1 ATTTATAGAATTACTGTTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTATAAAAT
*
75068524 TATTATTTTACCC-GCG
66 TACTATTTTACCCTG-G
** ** * *
75068540 ATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTACTATTTTATCCTCGATTTACAAAAT
1 ATTTATAGAATTACTGTTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTATAAAAT
* *
75068605 TACTATTTTTCCCTCG
66 TACTATTTTACCCTGG
* * *
75068621 ATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTATAAAAT
1 ATTTATAGAATTACTGTTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTATAAAAT
*
75068686 TACCATTTTACCC
66 TACTATTTTACCC
75068699 CTAGGGTGTT
Statistics
Matches: 138, Mismatches: 20, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
81 138 1.00
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.42
Consensus pattern (81 bp):
ATTTATAGAATTACTGTTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTATAAAAT
TACTATTTTACCCTGG
Found at i:75069631 original size:6 final size:6
Alignment explanation
Indices: 75069600--75069675 Score: 68
Period size: 6 Copynumber: 12.3 Consensus size: 6
75069590 TTGCATTCAC
* *
75069600 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
75069649 -TCTCCTG ATTCTG ATTCT- AGTTCTG AT
1 AT-T-CTG ATTCTG ATTCTG A-TTCTG AT
75069676 AATGTTTCTT
Statistics
Matches: 58, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
5 4 0.07
6 44 0.76
7 8 0.14
8 2 0.03
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:75069635 original size:31 final size:31
Alignment explanation
Indices: 75069600--75069675 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
75069590 TTGCATTCAC
*
75069600 ATTCTGATTTTGATTCTGT-TACCTGATACTG
1 ATTCTGATTCTGATTCTGTCT-CCTGATACTG
*
75069631 ATTCTGATTCTGATTCTGTCTCCTGATTCTG
1 ATTCTGATTCTGATTCTGTCTCCTGATACTG
75069662 ATTCT-AGTTCTGAT
1 ATTCTGA-TTCTGAT
75069676 AATGTTTCTT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
30 1 0.02
31 39 0.95
32 1 0.02
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCTCCTGATACTG
Found at i:75073031 original size:37 final size:37
Alignment explanation
Indices: 75072970--75073085 Score: 162
Period size: 37 Copynumber: 3.1 Consensus size: 37
75072960 TTATTACGAA
* * * * *
75072970 GTCTTACCCAGACATAA-TCTCCACATGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGTAGTCATCGG
75073007 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
*
75073044 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
75073081 GTCTT
1 GTCTT
75073086 TAGAGCTCGG
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
37 70 0.97
38 2 0.03
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
Found at i:75073282 original size:47 final size:47
Alignment explanation
Indices: 75073204--75073649 Score: 766
Period size: 47 Copynumber: 9.4 Consensus size: 47
75073194 CCCTTCGGGA
* * * * * * *
75073204 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75073251 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75073298 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75073345 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75073394 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75073441 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75073488 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75073537 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75073584 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75073631 CCTATCACATATATACACT
1 CTTATCACATATATACACT
75073650 GTCTTGGCTG
Statistics
Matches: 383, Mismatches: 12, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 289 0.75
49 94 0.25
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75073401 original size:96 final size:94
Alignment explanation
Indices: 75073204--75073649 Score: 766
Period size: 96 Copynumber: 4.7 Consensus size: 94
75073194 CCCTTCGGGA
* * * * * * * * *
75073204 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGACCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
75073269 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
75073298 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
75073363 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
75073394 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
75073459 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
75073488 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
75073553 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
75073584 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
75073649 T
66 T
75073650 GTCTTGGCTG
Statistics
Matches: 338, Mismatches: 10, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
94 150 0.44
96 188 0.56
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:75073473 original size:143 final size:143
Alignment explanation
Indices: 75073204--75073645 Score: 789
Period size: 143 Copynumber: 3.1 Consensus size: 143
75073194 CCCTTCGGGA
* * * * * * * *
75073204 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGACCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
75073267 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
75073332 TCGGCCATTAGGC
131 TCGGCCATTAGGC
75073345 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
75073410 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
75073475 TCGGCCATTAGGC
131 TCGGCCATTAGGC
75073488 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
75073553 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
75073618 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
75073631 CCTATCACATATATA
1 CTTATCACATATATA
75073646 CACTGTCTTG
Statistics
Matches: 290, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
141 10 0.03
142 1 0.00
143 279 0.96
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:75075907 original size:27 final size:27
Alignment explanation
Indices: 75075877--75076055 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
75075867 TTAGTTTACC
75075877 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * * *
75075904 AAATTACTAAAATACTCTTCGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
75075931 AAATCACCAAAATACCCATGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
75075958 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75075985 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
75076012 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
75076039 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
75076056 TCGACCTGTA
Statistics
Matches: 128, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:75075942 original size:54 final size:54
Alignment explanation
Indices: 75075867--75076028 Score: 252
Period size: 54 Copynumber: 3.0 Consensus size: 54
75075857 TTAGAATACT
* * *
75075867 TTAGTTTACCAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACTC
1 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* * * *
75075921 TTCGTTTATAAAATCACCAAAATACCCATGGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
*
75075975 TTAGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
75076029 CTGATTTGTG
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 96 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.31
Consensus pattern (54 bp):
TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
Found at i:75076069 original size:27 final size:27
Alignment explanation
Indices: 75076007--75076099 Score: 107
Period size: 27 Copynumber: 3.4 Consensus size: 27
75075997 TACCCCTAGT
** *
75076007 TTGTAAAATTACCAAAATACCC-CTGAT
1 TTGTAAAATTACTGAAATACCCTC-GAC
*
75076034 TTGTGAAATTACTGAAATACCCTCGAC
1 TTGTAAAATTACTGAAATACCCTCGAC
* * *
75076061 CTGTAAAATTATTGAAATACGCTCGAC
1 TTGTAAAATTACTGAAATACCCTCGAC
75076088 TTGTAAAATTAC
1 TTGTAAAATTAC
75076100 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
27 54 0.98
28 1 0.02
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCTCGAC
Found at i:75076069 original size:81 final size:79
Alignment explanation
Indices: 75075877--75076127 Score: 225
Period size: 81 Copynumber: 3.1 Consensus size: 79
75075867 TTAGTTTACC
** * * * *
75075877 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACTCTTCGTTTATAAAATCACCAAA
1 AAATTACCAAAATA-CCCT-GACTGTAAAATTACTAAAATACCCCTCGTTTGTAAAATTACCAAA
* *
75075942 ATACCCATGGTTTGTA
64 ATACCCCTGATTTGTA
* * * * *
75075958 AAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTGACTGT--AAAATTACTAAAATACCCCTCGTTTGTAAAATTACCAAA
*
75076023 ATACCCCTGATTTGTG
64 ATACCCCTGATTTGTA
** * * * *
75076039 AAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAATA-CGCTCGACTTGTAAAATTACCAA
1 AAATTACCAAAATACCCT-GA-CTGTAAAATTACTAAAATACCCCTCG-TTTGTAAAATTACCAA
* *
75076103 AGTACCCCTGATTTATA
63 AATACCCCTGATTTGTA
*
75076120 GAATTACC
1 AAATTACC
75076128 GATTTACCCT
Statistics
Matches: 136, Mismatches: 29, Indels: 10
0.78 0.17 0.06
Matches are distributed among these distances:
79 2 0.01
80 8 0.06
81 123 0.90
82 1 0.01
83 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (79 bp):
AAATTACCAAAATACCCTGACTGTAAAATTACTAAAATACCCCTCGTTTGTAAAATTACCAAAAT
ACCCCTGATTTGTA
Found at i:75076163 original size:54 final size:54
Alignment explanation
Indices: 75076108--75076352 Score: 334
Period size: 54 Copynumber: 4.6 Consensus size: 54
75076098 ACCAAAGTAC
*
75076108 CCCT-GATTTATAGAATTACCGA-TTTACCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAAAATTA-CGATTTTACCCTCGATTTACAAAATTACCGTTTTA
* ** * *
75076161 CCCTCGATTTATAGAATTATTATTTTACCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACGATTTTACCCTCGATTTACAAAATTACCGTTTTA
* *
75076215 CCCTCGATTTACAAAATTACTG-TTTTACCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAAAATTAC-GATTTTACCCTCGATTTACAAAATTACCGTTTTA
* *
75076269 CCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTATAAAATTACGATTTTACCCTCGATTTACAAAATTACCGTTTTA
* **
75076323 CCCTCAATTTATAAAATTATTATTTTACCC
1 CCCTCGATTTATAAAATTACGATTTTACCC
75076353 CTAGGATGTT
Statistics
Matches: 173, Mismatches: 15, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
53 5 0.03
54 168 0.97
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (54 bp):
CCCTCGATTTATAAAATTACGATTTTACCCTCGATTTACAAAATTACCGTTTTA
Found at i:75076167 original size:81 final size:81
Alignment explanation
Indices: 75076108--75076352 Score: 350
Period size: 81 Copynumber: 3.0 Consensus size: 81
75076098 ACCAAAGTAC
*
75076108 CCCT-GATTTATAGAATTACCGA-TTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTT
1 CCCTCGATTTATAGAATTACC-ATTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTT
* **
75076171 ATAGAATTATTATTTTA
65 ATAAAATTACCATTTTA
*
75076188 CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTA
* * *
75076253 CAGAATTACCGTTTTA
66 TAAAATTACCATTTTA
* * *
75076269 CCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCAATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTA
**
75076334 TAAAATTATTATTTTA
66 TAAAATTACCATTTTA
75076350 CCC
1 CCC
75076353 CTAGGATGTT
Statistics
Matches: 148, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
80 5 0.03
81 143 0.97
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTA
TAAAATTACCATTTTA
Found at i:75076338 original size:27 final size:27
Alignment explanation
Indices: 75076108--75076352 Score: 303
Period size: 27 Copynumber: 9.1 Consensus size: 27
75076098 ACCAAAGTAC
* * * *
75076108 CCCT-GATTTATAGAATTACCGATTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
*
75076134 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
* * * *
75076161 CCCTCGATTTATAGAATTATTATTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
* **
75076188 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
75076215 CCCTCGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
* *
75076242 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
* *
75076269 CCCTCGATTTATAAAATTACTATTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
75076296 CCCTCGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
* * * *
75076323 CCCTCAATTTATAAAATTATTATTTTA
1 CCCTCGATTTACAAAATTACTGTTTTA
75076350 CCC
1 CCC
75076353 CTAGGATGTT
Statistics
Matches: 192, Mismatches: 26, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
26 4 0.02
27 188 0.98
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACTGTTTTA
Found at i:75076374 original size:81 final size:78
Alignment explanation
Indices: 75076130--75076380 Score: 297
Period size: 81 Copynumber: 3.1 Consensus size: 78
75076120 GAATTACCGA
*
75076130 TTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTATTATTTTACCCTCGA
1 TTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTATTATTTTACCCTCGA
*
75076195 TTTACA-GAATTACCAT
66 TTTAAATG-ATT---AT
* ***
75076211 TTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGA
1 TTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTATTATTTTACCCTCGA
* *
75076276 TTTATAAAATTACTAT
66 -TT-T-AAATGATTAT
* * *
75076292 TTTACCCTCGATTTACAAAATTACTGTTTTACCCTCAATTTATAAAATTATTATTTTACCCCTAG
1 TTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTATTATTTTA-CCCT-C
75076357 GATGTTAAATGATTAT
64 GAT-TTAAATGATTAT
*
75076373 TTTTCCCT
1 TTTACCCT
75076381 TGTGCGCAAG
Statistics
Matches: 145, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
81 129 0.89
82 8 0.06
83 4 0.03
84 4 0.03
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.42
Consensus pattern (78 bp):
TTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTATTATTTTACCCTCGA
TTTAAATGATTAT
Found at i:75076894 original size:6 final size:6
Alignment explanation
Indices: 75076863--75076950 Score: 83
Period size: 6 Copynumber: 14.3 Consensus size: 6
75076853 TTGTATTCAC
* *
75076863 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
75076912 -TCTCCTG ATTCTA ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT-T-CTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
75076951 AATGTTTCTT
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.79
7 8 0.12
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:75076898 original size:31 final size:31
Alignment explanation
Indices: 75076863--75076941 Score: 115
Period size: 31 Copynumber: 2.5 Consensus size: 31
75076853 TTGTATTCAC
* *
75076863 ATTCTGATTTTGATTCTGT-TACCTGATACTG
1 ATTCTGATTCTGATTCTGTCT-CCTGATACTA
*
75076894 ATTCTGATTCTGATTCTGTCTCCTGATTCTA
1 ATTCTGATTCTGATTCTGTCTCCTGATACTA
75076925 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
75076942 AGTTCTGATA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
31 43 0.98
32 1 0.02
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCTCCTGATACTA
Found at i:75078930 original size:27 final size:27
Alignment explanation
Indices: 75078900--75079150 Score: 234
Period size: 27 Copynumber: 9.3 Consensus size: 27
75078890 TTAGTTTACC
75078900 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
75078927 AAATTACTAAAATACTCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75078954 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
75078981 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75079008 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
75079035 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** * ***
75079062 AAATTACTGAAATACCCTTGACCTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*** ***
75079089 AAATTATTGAAATA-CCCTCAACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* * *
75079116 AAATTACCAAAGTACCCCTGATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
75079143 GAATTACC
1 AAATTACC
75079151 GATTTACCCT
Statistics
Matches: 184, Mismatches: 38, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
26 3 0.02
27 177 0.96
28 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:75078965 original size:54 final size:54
Alignment explanation
Indices: 75078893--75079054 Score: 270
Period size: 54 Copynumber: 3.0 Consensus size: 54
75078883 GAATACTTTA
* * *
75078893 GTTTACCAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACTCTTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
* *
75078947 GTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
*
75079001 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
75079055 ATTTGTGAAA
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 100 1.00
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.31
Consensus pattern (54 bp):
GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
Found at i:75079066 original size:54 final size:54
Alignment explanation
Indices: 75078900--75079177 Score: 268
Period size: 54 Copynumber: 5.1 Consensus size: 54
75078890 TTAGTTTACC
* *
75078900 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACTCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
75078954 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *
75079008 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
** * *** *** **** *
75079062 AAATTACTGAAATACCCTTGACCTGTAAAATTATTGAAATACCCTCAACTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * * ** * * *
75079116 AAATTACCAAAGTACCCCTGATTTATAGAATTACCGATTTACCCTCGATTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
75079170 AAATTACC
1 AAATTACC
75079178 GTTTTACCCT
Statistics
Matches: 184, Mismatches: 40, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 184 1.00
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:75079158 original size:27 final size:27
Alignment explanation
Indices: 75079131--75079317 Score: 187
Period size: 27 Copynumber: 7.0 Consensus size: 27
75079121 ACCAAAGTAC
*
75079131 CCCT-GATTTATAGAATTACCGATTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
75079157 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
75079184 CCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * **
75079211 CCCTCGATTTACAAAATTATTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* ** * * **
75079238 CCTTTAATTTACAGAATTTCTATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
75079265 CCCTCGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
75079292 ACCTCGATTTATAAAATTACCATTTT
1 CCCTCGATTTATAGAATTACCGTTTT
75079318 CCCCCTAGGG
Statistics
Matches: 132, Mismatches: 28, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
26 4 0.03
27 128 0.97
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.43
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:75079173 original size:81 final size:81
Alignment explanation
Indices: 75078952--75079177 Score: 231
Period size: 81 Copynumber: 2.8 Consensus size: 81
75078942 TCTTGGTTTA
* * * * *
75078952 TAAAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCA
1 TAAAATTACCAAAATACCCCTGATTTGTAGAATTACCGAAATACCCTTGATTTACAAAATTACCA
**
75079017 AAATACCCCTAGTTTG
66 AAATACCCCTAACTTG
* * ** ** **
75079033 TAAAATTACCAAAATACCCTTGATTTGT-GAAATTACTGAAATACCCTTGACCTGTAAAATTATT
1 TAAAATTACCAAAATACCCCTGATTTGTAG-AATTACCGAAATACCCTTGATTTACAAAATTACC
*
75079097 GAAATA-CCCTCAACTTG
65 AAAATACCCCT-AACTTG
* * ** *
75079114 TAAAATTACCAAAGTACCCCTGATTTATAGAATTACCGATTTACCCTCGATTTACAAAATTACC
1 TAAAATTACCAAAATACCCCTGATTTGTAGAATTACCGAAATACCCTTGATTTACAAAATTACC
75079178 GTTTTACCCT
Statistics
Matches: 113, Mismatches: 29, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
80 4 0.04
81 108 0.96
82 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCCTGATTTGTAGAATTACCGAAATACCCTTGATTTACAAAATTACCA
AAATACCCCTAACTTG
Found at i:75079213 original size:81 final size:81
Alignment explanation
Indices: 75079131--75079316 Score: 216
Period size: 81 Copynumber: 2.3 Consensus size: 81
75079121 ACCAAAGTAC
* * *
75079131 CCCT-GATTTATAGAATTACCGATTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAAAATTACCGATTTACCCTCAATTTACAAAATTACCATTTTACCCTCGATTTA
*
75079195 TAGAATTA-CTGTTTTA
66 CAGAATTATC-GTTTTA
* ** * * * * * *
75079211 CCCTCGATTTACAAAATTATTGTTTTACCTTTAATTTACAGAATTTCTATTTTACCCTCGATTTA
1 CCCTCGATTTATAAAATTACCGATTTACCCTCAATTTACAAAATTACCATTTTACCCTCGATTTA
75079276 CAGAATTATCGTTTTA
66 CAGAATTATCGTTTTA
*
75079292 ACCTCGATTTATAAAATTACC-ATTT
1 CCCTCGATTTATAAAATTACCGATTT
75079317 TCCCCCTAGG
Statistics
Matches: 86, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
80 7 0.08
81 78 0.91
82 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (81 bp):
CCCTCGATTTATAAAATTACCGATTTACCCTCAATTTACAAAATTACCATTTTACCCTCGATTTA
CAGAATTATCGTTTTA
Found at i:75079317 original size:54 final size:54
Alignment explanation
Indices: 75079135--75079317 Score: 226
Period size: 54 Copynumber: 3.4 Consensus size: 54
75079125 AAGTACCCCT
* *
75079135 GATTTATAGAATTACCGA-TTTACCCTCGATTTACAAAATTACCGTTTTACCCTC
1 GATTTATAGAATTACC-ATTTTACCCTCGATTTACAAAATTATCGTTTTAACCTC
** * *
75079189 GATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTATTGTTTT-ACCTTT
1 GATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTTTTAACC-TC
* * * * *
75079243 AATTTACAGAATTTCTATTTTACCCTCGATTTACAGAATTATCGTTTTAACCTC
1 GATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTTTTAACCTC
*
75079297 GATTTATAAAATTACCATTTT
1 GATTTATAGAATTACCATTTT
75079318 CCCCCTAGGG
Statistics
Matches: 108, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
53 2 0.02
54 103 0.95
55 3 0.03
ACGTcount: A:0.30, C:0.19, G:0.08, T:0.43
Consensus pattern (54 bp):
GATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTTTTAACCTC
Found at i:75079601 original size:27 final size:26
Alignment explanation
Indices: 75079557--75079608 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
75079547 CTCGCTGCAA
*
75079557 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
75079584 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
75079609 GCAGCCTCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:75086426 original size:43 final size:43
Alignment explanation
Indices: 75086374--75086471 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 43
75086364 ATATCCCAGT
* * * *
75086374 ATGGTCTTACATGTAATC-ATATATCGATGCCATTGTCCCAGAC
1 ATGGTCTTACACGAAATCGAT-TAACGATGCCAATGTCCCAGAC
* *
75086417 A-GTGTCTTACACGAAATCGATTAACGGTGCTAATGTCCCAGAC
1 ATG-GTCTTACACGAAATCGATTAACGATGCCAATGTCCCAGAC
75086460 ATGGTCTTACAC
1 ATGGTCTTACAC
75086472 ATAATCTGAA
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
42 1 0.02
43 42 0.91
44 3 0.07
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCGATTAACGATGCCAATGTCCCAGAC
Found at i:75091202 original size:33 final size:32
Alignment explanation
Indices: 75091141--75091202 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 32
75091131 AAATAGACTG
* *
75091141 GGCCTGAGCCCTTCACAGAAACAGTATCAGCT
1 GGCCTGAGCCCTTAACAGAAACAATATCAGCT
* *
75091173 GGCCTTAGCCCATTAACAGAATCAATATCA
1 GGCCTGAGCCC-TTAACAGAAACAATATCA
75091203 AATGCAGATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 10 0.40
33 15 0.60
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (32 bp):
GGCCTGAGCCCTTAACAGAAACAATATCAGCT
Found at i:75096549 original size:93 final size:93
Alignment explanation
Indices: 75096437--75096607 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
75096427 GCCCATAAGT
* *
75096437 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75096502 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
75096530 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGTACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
75096595 CGAGTTTGGATGC
66 CGAGCTCGGATGC
75096608 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:75096600 original size:46 final size:45
Alignment explanation
Indices: 75096429--75096598 Score: 200
Period size: 46 Copynumber: 3.7 Consensus size: 45
75096419 TGTAACCCGC
*
75096429 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
*
75096475 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
75096521 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
75096568 CCATAAGTGAACTCGTACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
75096599 TTTGGATGCT
Statistics
Matches: 104, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 61 0.59
47 32 0.31
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:75099403 original size:33 final size:33
Alignment explanation
Indices: 75099361--75099437 Score: 136
Period size: 33 Copynumber: 2.3 Consensus size: 33
75099351 TAAGCCCATG
75099361 CAGGATGTCATATCATGGTAACATACGTGAATA
1 CAGGATGTCATATCATGGTAACATACGTGAATA
*
75099394 CAGGATGTCATATCATGGTAACATACGTGAATG
1 CAGGATGTCATATCATGGTAACATACGTGAATA
*
75099427 CAAGATGTCAT
1 CAGGATGTCAT
75099438 GCTCAGTATC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (33 bp):
CAGGATGTCATATCATGGTAACATACGTGAATA
Found at i:75103339 original size:43 final size:43
Alignment explanation
Indices: 75103286--75103432 Score: 176
Period size: 43 Copynumber: 3.4 Consensus size: 43
75103276 TATCCCAAAT
75103286 ATGGTCTTACATGTAATCATATATCGATG-CAACTGTCCCAGAC
1 ATGGTCTTACATGTAATCATATATCGATGCCAA-TGTCCCAGAC
** * *
75103329 CGGGTCTTACATGAAATCGAT-TAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATC-ATATATCGATGCCAATGTCCCAGAC
* **
75103372 ATGGTCTTACACGTAATC-TCA-ATAAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCAT-ATATCGATGCCAATGTCCCAGAC
75103414 ATGGTCTTACATGTAATCA
1 ATGGTCTTACATGTAATCA
75103433 CATCTTGATG
Statistics
Matches: 87, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 35 0.40
43 46 0.53
44 5 0.06
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCATATATCGATGCCAATGTCCCAGAC
Found at i:75105620 original size:53 final size:53
Alignment explanation
Indices: 75105539--75105689 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
75105529 CTTACACGGT
* *
75105539 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
75105594 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
75105647 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
75105690 GCACACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:75112360 original size:47 final size:47
Alignment explanation
Indices: 75112301--75112694 Score: 576
Period size: 47 Copynumber: 8.4 Consensus size: 47
75112291 TATCACATTT
* * *
75112301 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCTTATCTCAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
75112346 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
75112393 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * * *
75112440 ATATACATGTTTACTTTCATCACATTGGCCATTCGGCTTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
75112487 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * **
75112534 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACGT
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
75112581 ATACACCTATTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
75112628 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAT
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
75112675 ATACACCTATTCACATTCAT
1 ATACACATGTTCACATTCAT
75112695 TCAATTAGAC
Statistics
Matches: 317, Mismatches: 30, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
45 6 0.02
46 1 0.00
47 310 0.98
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:75112462 original size:25 final size:25
Alignment explanation
Indices: 75112433--75112557 Score: 68
Period size: 25 Copynumber: 5.2 Consensus size: 25
75112423 ATTCGGCCTT
*
75112433 ATCACACATATACATGTTTACTTTC
1 ATCACACATATACATGTTCACTTTC
* *** *
75112458 ATCACA-TTGGCCA--TTCGGCTTT-
1 ATCACACATATACATGTTC-ACTTTC
75112480 ATCACACATATACATGTTCACTTTC
1 ATCACACATATACATGTTCACTTTC
* *** * *
75112505 ATCACA-TTGGCCA--TTCGGCCTT-
1 ATCACACATATACATGTTC-ACTTTC
75112527 ATCACACATATACATGTTCACTTTC
1 ATCACACATATACATGTTCACTTTC
75112552 ATCACA
1 ATCACA
75112558 TTGGCCATTC
Statistics
Matches: 67, Mismatches: 23, Indels: 20
0.61 0.21 0.18
Matches are distributed among these distances:
22 17 0.25
23 13 0.19
24 13 0.19
25 24 0.36
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.35
Consensus pattern (25 bp):
ATCACACATATACATGTTCACTTTC
Found at i:75112624 original size:22 final size:22
Alignment explanation
Indices: 75112552--75112626 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
75112542 GTTCACTTTC
75112552 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
*** * *
75112574 ATCACGTATACACCTATTC-ACATT
1 ATCAC--ATTGGCC-ATTCGGCCTT
75112598 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
75112621 ATCACA
1 ATCACA
75112627 CATATACATG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.39
23 7 0.18
24 7 0.18
25 9 0.24
ACGTcount: A:0.25, C:0.32, G:0.12, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:75118226 original size:53 final size:53
Alignment explanation
Indices: 75118145--75118295 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
75118135 CTTACACGGT
* *
75118145 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
* *
75118200 TCACATTATACCGATGCCATAGCCCAGCTATGGCCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
75118253 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
75118296 GCACATTTAT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
52 1 0.01
53 79 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:75122363 original size:43 final size:43
Alignment explanation
Indices: 75122243--75122364 Score: 113
Period size: 43 Copynumber: 2.8 Consensus size: 43
75122233 AGCTCGTACA
* **
75122243 ATGCCAATGTCCCAAATGTGGTCTTACACGT-AATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACA-GTAAATCAAATATCG
* * * * * **
75122286 ATACCATTGTCCTAGACAGGGTTTTACACAAAATCAAATAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACAGTAAATCAAATATCG
*
75122328 ATGCCAATGTCCCAGACATGGTCTTATATGTAAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACA-GTAAATCA
75122365 TAAGTCGATT
Statistics
Matches: 59, Mismatches: 18, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
42 23 0.39
43 36 0.61
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACAGTAAATCAAATATCG
Found at i:75124118 original size:42 final size:41
Alignment explanation
Indices: 75124039--75124188 Score: 162
Period size: 41 Copynumber: 3.6 Consensus size: 41
75124029 GAGCTTGGTC
75124039 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
*
75124080 TCGAAGGGCTTTTTAGAGCCAGTG-TCATAACCGAACTTAGTT
1 TCGAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTT
* * * * * * *
75124122 CCGAAGGGCCTTCGAGCCAGTAGTCTAAT--CTGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTT
*
75124163 TCGAAGGGCTTTTGAGCCGGTGCTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
75124189 GAGTCGGACT
Statistics
Matches: 91, Mismatches: 13, Indels: 12
0.78 0.11 0.10
Matches are distributed among these distances:
39 4 0.04
40 9 0.10
41 37 0.41
42 29 0.32
43 12 0.13
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:75126166 original size:8 final size:8
Alignment explanation
Indices: 75126153--75126177 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
75126143 AAATTAACCC
75126153 TCACATTT
1 TCACATTT
75126161 TCACATTT
1 TCACATTT
75126169 TCACATTT
1 TCACATTT
75126177 T
1 T
75126178 AGTCCCTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (8 bp):
TCACATTT
Found at i:75133298 original size:43 final size:42
Alignment explanation
Indices: 75133229--75133385 Score: 136
Period size: 43 Copynumber: 3.7 Consensus size: 42
75133219 CTCGTACAAC
* * *
75133229 GCCAATGTCCCAAATATGGTCTTACACGTAATCAAATATCAAT
1 GCCAATGTCCCAGACAGGGTCTTACACGTAATCAAATAT-AAT
* * * ** *
75133272 GCCATTGTCCTAGACAGGGTTTTACACAAAATCAAATATGAT
1 GCCAATGTCCCAGACAGGGTCTTACACGTAATCAAATATAAT
* * **
75133314 GCCAATGTCCCAGACATGGTCTTACATGTAAATCATAAGT-CGAT
1 GCCAATGTCCCAGACAGGGTCTTACACGT-AATCA-AA-TATAAT
* *
75133358 TCCAATGTCCCAGACAAGGTCTTACACG
1 GCCAATGTCCCAGACAGGGTCTTACACG
75133386 AAAGCACATA
Statistics
Matches: 91, Mismatches: 20, Indels: 5
0.78 0.17 0.04
Matches are distributed among these distances:
42 24 0.26
43 36 0.40
44 30 0.33
45 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.27
Consensus pattern (42 bp):
GCCAATGTCCCAGACAGGGTCTTACACGTAATCAAATATAAT
Found at i:75148638 original size:56 final size:56
Alignment explanation
Indices: 75148566--75148679 Score: 156
Period size: 56 Copynumber: 2.0 Consensus size: 56
75148556 TCTTACATGT
* *
75148566 AATCACATATCGATGCCAACGTCCCAAACGTGGTCTTACTCACACACATATATAAA
1 AATCACATATCAATGCCAACGTACCAAACGTGGTCTTACTCACACACATATATAAA
* ** * * *
75148622 AATCACATATCAATGCCAATGTATTAAACGTGGTCTTACTCGCACAGATATATGAA
1 AATCACATATCAATGCCAACGTACCAAACGTGGTCTTACTCACACACATATATAAA
75148678 AA
1 AA
75148680 CCATGGTCTT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.25
Consensus pattern (56 bp):
AATCACATATCAATGCCAACGTACCAAACGTGGTCTTACTCACACACATATATAAA
Found at i:75154139 original size:22 final size:21
Alignment explanation
Indices: 75154113--75154157 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
75154103 TTAGTTTAAA
*
75154113 AAAAAGATGATAATTATTAATAT
1 AAAATGAT-ATAATTA-TAATAT
*
75154136 AAAATTATATAATTATAATAT
1 AAAATGATATAATTATAATAT
75154157 A
1 A
75154158 TATTAATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 7 0.35
23 6 0.30
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (21 bp):
AAAATGATATAATTATAATAT
Found at i:75154164 original size:16 final size:15
Alignment explanation
Indices: 75154124--75154167 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
75154114 AAAAGATGAT
75154124 AATTATTAA-TATAA
1 AATTATTAATTATAA
75154138 AATTATATAATTATAA
1 AATTAT-TAATTATAA
*
75154154 TATATATTAATTAT
1 AAT-TATTAATTAT
75154168 TATCAACTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
14 6 0.23
15 3 0.12
16 14 0.54
17 3 0.12
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
AATTATTAATTATAA
Found at i:75168372 original size:12 final size:12
Alignment explanation
Indices: 75168355--75168379 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
75168345 AGCAAAATAG
75168355 GCTTTTAGCGGC
1 GCTTTTAGCGGC
75168367 GCTTTTAGCGGC
1 GCTTTTAGCGGC
75168379 G
1 G
75168380 TTTGGACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.24, G:0.36, T:0.32
Consensus pattern (12 bp):
GCTTTTAGCGGC
Found at i:75168856 original size:154 final size:152
Alignment explanation
Indices: 75168510--75168937 Score: 450
Period size: 154 Copynumber: 2.7 Consensus size: 152
75168500 GCTTATGTAG
* * * *
75168510 AAAACGCCGCAAAAAATAAAGCATTAGCGGCGTTTATAAAAGAACGCTGCAATGGCTGACACATT
1 AAAACGCCGCAAAAATTCAAGCATTAGCGGCGTTT-TAAAA-AACGCCGCAATGG-TGACGCATT
* * * *
75168575 AGCGGCGGTTGTCAAAAAATGCCGCAAAAGTGTTGAGCAAAACGGTGCCGTATGTTGGTGAGCTC
63 AGCGGCGGTT-TCTAAAAACGCCGCAAAAGTGTTGAGCAAAACGGCGCCGTATGTAGGTGAGC-C
* *
75168640 TTTTGAGGCATTAGCGGCTTTTTACCA
126 TATTGAGGCATTAGCGGCTTTCTACCA
* * *
75168667 AAAATGCCGCTATAACTTCAAGCATTAGCGGCGTTTTACCAAAAACGCCGCAATAGGTGACGCAT
1 AAAACGCCGC-AAAAATTCAAGCATTAGCGGCGTTTTA--AAAAACGCCGCAAT-GGTGACGCAT
* * * *
75168732 TAGCGGCGGTTTCTACAAACGTCGCAAAAG-ATTGAGCAAAACGGCGCCGTGTGTAGGTGAG-CT
62 TAGCGGCGGTTTCTAAAAACGCCGCAAAAGTGTTGAGCAAAACGGCGCCGTATGTAGGTGAGCCT
**
75168795 ATTGAGGCATTAGCGGCGTTTCT-CGT
127 ATTGAGGCATTAGCGGC-TTTCTACCA
** * *
75168821 AAAACGCCGCAAAAAGTTCAAGCATTAGCGGCGTTTTTGTAAAA-GTACCGCAATGGGTGAAGTA
1 AAAACGCCGCAAAAA-TTCAAGCATTAGCGGCG-TTTTAAAAAACG--CCGCAAT-GGTGACGCA
** *
75168885 TTAGCGGCATTTTTCTAAAAACGCCGCAAAAGTGTTGAGCAAAACGGCACCGT
61 TTAGCGGC-GGTTTCTAAAAACGCCGCAAAAGTGTTGAGCAAAACGGCGCCGT
75168938 CCATTAGTTA
Statistics
Matches: 227, Mismatches: 33, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
152 1 0.00
153 7 0.03
154 67 0.30
155 27 0.12
156 45 0.20
157 26 0.11
158 49 0.22
159 5 0.02
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.23
Consensus pattern (152 bp):
AAAACGCCGCAAAAATTCAAGCATTAGCGGCGTTTTAAAAAACGCCGCAATGGTGACGCATTAGC
GGCGGTTTCTAAAAACGCCGCAAAAGTGTTGAGCAAAACGGCGCCGTATGTAGGTGAGCCTATTG
AGGCATTAGCGGCTTTCTACCA
Found at i:75173595 original size:14 final size:13
Alignment explanation
Indices: 75173572--75173601 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
75173562 ATTACTATAA
75173572 TAATTATATGAAG
1 TAATTATATGAAG
75173585 TAATATATATGAAG
1 TAAT-TATATGAAG
75173599 TAA
1 TAA
75173602 AATTATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (13 bp):
TAATTATATGAAG
Found at i:75173981 original size:183 final size:183
Alignment explanation
Indices: 75173672--75174040 Score: 675
Period size: 183 Copynumber: 2.0 Consensus size: 183
75173662 GATATAGTTC
*
75173672 CATGTGTCTATATTAGTGAATTAATGTTGTATATGTTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
*
75173737 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGGTATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
75173802 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGTTACTCTTATAATCTTA
131 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
* *
75173855 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
*
75173920 GCTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
75173985 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
75174038 CAT
1 CAT
75174041 CTGTTCTAGG
Statistics
Matches: 179, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
183 179 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (183 bp):
CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
Found at i:75174261 original size:15 final size:15
Alignment explanation
Indices: 75174241--75174269 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
75174231 GGAGTAGACC
75174241 AGGTACGTTTTATTA
1 AGGTACGTTTTATTA
75174256 AGGTACGTTTTATT
1 AGGTACGTTTTATT
75174270 TCAAAATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (15 bp):
AGGTACGTTTTATTA
Found at i:75175188 original size:273 final size:274
Alignment explanation
Indices: 75174531--75175753 Score: 2218
Period size: 273 Copynumber: 4.5 Consensus size: 274
75174521 CCAACCTTAT
75174531 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
75174596 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
75174661 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATGTACTTATA
75174726 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTT-TATATAATAA
196 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTATAT-TAATAA
75174790 TGTTTGATTTTAATA
260 TGTTTGATTTTAATA
* * *
75174805 TTTAAATATTTTAAAGATTCAAAGTATACAGGCTGGAAACCTGATGGGTTGCCTTATATGGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
* *
75174870 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCCCGTATGATGAATCTTAAAAAATTCGA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
75174935 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATGTACTTATA
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATGTACTTATA
75175000 AAAATTAAACTACGATTC-TTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAAT
196 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAAT
75175064 GTTTGATTTTAATA
261 GTTTGATTTTAATA
*
75175078 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATGTCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
* * *
75175143 GCAAGATATAATGGATCCTCCCTAGGTGTAACACCGCCACGTATGATGAATCTCAAAAAATTAAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
* *
75175208 AAAGACTTGAAAAAAGTTCTACCGAGCTCATTTACTATTGAATATTTATTTCTAATGTACTTATA
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATGTACTTATA
75175273 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
196 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTA-TTTTTTATATTAATAA
75175338 TGTTTGATTTTAATA
260 TGTTTGATTTTAATA
*
75175353 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGAGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
* *
75175418 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACATATTATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
* *
75175483 AAAGACTTGAAAAATGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATGTACTTATA
*
75175548 AAAATTAAACTACGATTC-TTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAGTAAT
196 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAAT
75175612 GTTTGATTTTAATA
261 GTTTGATTTTAATA
75175626 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
* * *
75175691 GCAAGATATATTGGATCCTCCCTAGGTGTAACAACACCGCGTATGATGAATCTTAAAAAATTC
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
75175754 TCCGTCTTAT
Statistics
Matches: 911, Mismatches: 35, Indels: 7
0.96 0.04 0.01
Matches are distributed among these distances:
273 410 0.45
274 268 0.29
275 233 0.26
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.38
Consensus pattern (274 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATGTACTTATA
AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAAT
GTTTGATTTTAATA
Found at i:75175590 original size:548 final size:547
Alignment explanation
Indices: 75174531--75175752 Score: 2246
Period size: 548 Copynumber: 2.2 Consensus size: 547
75174521 CCAACCTTAT
75174531 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
75174596 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTAAA
* *
75174661 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTTACTTATA
131 AAAGACTTGAAAAAAGTTCTACCGAGCTCATTTACTATTGAATATTTATTTCCAATGTACTTATA
75174726 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATAATAAT
196 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATAATAAT
* *
75174791 GTTTGATTTTAATATTTAAATATTTTAAAGATTCAAAGTATACAGGCTGGAAACCTGATGGGTTG
261 GTTTGATTTTAATATTTAAATATTTTAAAGATTCAAAGTATACAGGCTGGAAACCTGACGAGTTG
* * *
75174856 CCTTATATGGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCCCGTATGATGAAT
326 CCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACATATGATGAAT
*
75174921 CTTAAAAAATTCGAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTT
391 CTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTT
75174986 CCAATGTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTT
456 CCAATGTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTT
75175051 TTATATTAATAATGTTTGATTTTAATA
521 TTATATTAATAATGTTTGATTTTAATA
*
75175078 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATGTCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
* *
75175143 GCAAGATATAATGGATCCTCCCTAGGTGTAACACCGCCACGTATGATGAATCTCAAAAAATTAAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTAAA
*
75175208 AAAGACTTGAAAAAAGTTCTACCGAGCTCATTTACTATTGAATATTTATTTCTAATGTACTTATA
131 AAAGACTTGAAAAAAGTTCTACCGAGCTCATTTACTATTGAATATTTATTTCCAATGTACTTATA
75175273 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAA
196 AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATA-TAATAA
*
75175338 TGTTTGATTTTAATATTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGAGTT
260 TGTTTGATTTTAATATTTAAATATTTTAAAGATTCAAAGTATACAGGCTGGAAACCTGACGAGTT
*
75175403 GCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACATATTATGAA
325 GCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACATATGATGAA
*
75175468 TCTTAAAAAATTCAAAAAGACTTGAAAAATGTTCTATCGAGCTCATTTACTATTGAATATTTATT
390 TCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATT
*
75175533 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTT
455 TCCAATGTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTT
*
75175598 TTTATATTAGTAATGTTTGATTTTAATA
520 TTTATATTAATAATGTTTGATTTTAATA
75175626 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
* * *
75175691 GCAAGATATATTGGATCCTCCCTAGGTGTAACAACACCGCGTATGATGAATCTTAAAAAATT
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATT
75175753 CTCCGTCTTA
Statistics
Matches: 650, Mismatches: 24, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
547 246 0.38
548 404 0.62
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.38
Consensus pattern (547 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTAAA
AAAGACTTGAAAAAAGTTCTACCGAGCTCATTTACTATTGAATATTTATTTCCAATGTACTTATA
AAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATAATAAT
GTTTGATTTTAATATTTAAATATTTTAAAGATTCAAAGTATACAGGCTGGAAACCTGACGAGTTG
CCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACATATGATGAAT
CTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTT
CCAATGTACTTATAAAAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTT
TTATATTAATAATGTTTGATTTTAATA
Found at i:75176007 original size:15 final size:15
Alignment explanation
Indices: 75175963--75176018 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
75175953 AACGACATGT
*
75175963 ATATTACTTAATTAAA
1 ATATTATTTAATT-AA
75175979 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
75175992 ATATTATTTAATTAA
1 ATATTATTTAATTAA
75176007 ATATTATTTAAT
1 ATATTATTTAAT
75176019 CCCGCTACTT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
12 3 0.09
13 7 0.20
14 2 0.06
15 16 0.46
16 4 0.11
17 3 0.09
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:75176163 original size:9 final size:9
Alignment explanation
Indices: 75176124--75176294 Score: 60
Period size: 9 Copynumber: 18.4 Consensus size: 9
75176114 ATTTGATATC
*
75176124 ATAATTTAT
1 ATAACTTAT
*
75176133 ATAACTTAC
1 ATAACTTAT
* * *
75176142 AAAACGTAC
1 ATAACTTAT
75176151 ATAACTTAT
1 ATAACTTAT
*
75176160 ATAACTTAC
1 ATAACTTAT
*
75176169 ATAA-ATAT
1 ATAACTTAT
*
75176177 ATAACTTAC
1 ATAACTTAT
75176186 ATAATACTTAAAT
1 AT-A-ACTT--AT
**
75176199 ATATTTTATAT
1 ATA-ACT-TAT
* *
75176210 CATAATTTAC
1 -ATAACTTAT
*
75176220 ATAACTTAC
1 ATAACTTAT
75176229 ATAACTTAT
1 ATAACTTAT
*
75176238 ATAACTTAG
1 ATAACTTAT
*
75176247 ATAA-ATAT
1 ATAACTTAT
* *
75176255 ATAATTTAC
1 ATAACTTAT
*
75176264 ATAA-ATAT
1 ATAACTTAT
* *
75176272 ATATCATAT
1 ATAACTTAT
*
75176281 CATAACTTAC
1 -ATAACTTAT
75176291 ATAA
1 ATAA
75176295 TACTTAAATA
Statistics
Matches: 122, Mismatches: 30, Indels: 20
0.71 0.17 0.12
Matches are distributed among these distances:
8 17 0.14
9 78 0.64
10 9 0.07
11 8 0.07
12 6 0.05
13 4 0.03
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.39
Consensus pattern (9 bp):
ATAACTTAT
Found at i:75176179 original size:17 final size:18
Alignment explanation
Indices: 75176148--75176274 Score: 84
Period size: 17 Copynumber: 6.8 Consensus size: 18
75176138 TTACAAAACG
75176148 TACATAACT-TATATAACT
1 TACATAA-TATATATAACT
75176166 TACATAA-ATATATAACT
1 TACATAATATATATAACT
**
75176183 TACATAATACTTAAATATATTTT
1 TACATAATA--T--ATATA-ACT
* *
75176206 ATATCATAATTTACATAACT
1 -TA-CATAATATATATAACT
75176226 TACATAACT-TATATAACT
1 TACATAA-TATATATAACT
* *
75176244 TAGATAA-ATATATAATT
1 TACATAATATATATAACT
75176261 TACATAA-ATATATA
1 TACATAATATATATA
75176275 TCATATCATA
Statistics
Matches: 88, Mismatches: 10, Indels: 23
0.73 0.08 0.19
Matches are distributed among these distances:
17 37 0.42
18 27 0.31
19 3 0.03
20 2 0.02
21 4 0.05
22 5 0.06
23 2 0.02
24 2 0.02
25 6 0.07
ACGTcount: A:0.48, C:0.11, G:0.01, T:0.40
Consensus pattern (18 bp):
TACATAATATATATAACT
Found at i:75176202 original size:24 final size:25
Alignment explanation
Indices: 75176151--75176202 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
75176141 CAAAACGTAC
*
75176151 ATAACTTATATAACTTACATAAATAT
1 ATAACTTACATAAC-TACATAAATAT
*
75176177 ATAACTTACATAA-TACTTAAATAT
1 ATAACTTACATAACTACATAAATAT
75176201 AT
1 AT
75176203 TTTATATCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 12 0.50
26 12 0.50
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (25 bp):
ATAACTTACATAACTACATAAATAT
Found at i:75176222 original size:34 final size:34
Alignment explanation
Indices: 75176173--75176318 Score: 127
Period size: 34 Copynumber: 4.2 Consensus size: 34
75176163 ACTTACATAA
* *
75176173 ATAT-ATAACTTACATAATACTTAAATATATTTT
1 ATATCATAACTTACATAATACTTAAATATATATC
* * * *
75176206 ATATCATAATTTACATAACTTACATAACTTATATAAC
1 ATATCATAACTTACATAA--TACTTAA-ATATATATC
* * * * *
75176243 TTA-GATAA-ATATATAATTTACATAAATATATATC
1 ATATCATAACTTACATAA--TACTTAAATATATATC
75176277 ATATCATAACTTACATAATACTTAAATATATATC
1 ATATCATAACTTACATAATACTTAAATATATATC
75176311 ATATCATA
1 ATATCATA
75176319 CATAACTAGC
Statistics
Matches: 89, Mismatches: 18, Indels: 11
0.75 0.15 0.09
Matches are distributed among these distances:
33 4 0.04
34 44 0.49
35 18 0.20
36 16 0.18
37 7 0.08
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.40
Consensus pattern (34 bp):
ATATCATAACTTACATAATACTTAAATATATATC
Found at i:75176242 original size:87 final size:87
Alignment explanation
Indices: 75176092--75176250 Score: 255
Period size: 87 Copynumber: 1.8 Consensus size: 87
75176082 TGAAATAAAA
*
75176092 AACTTACATAATACATAAATATATTTGATATCATAATTTATATAACTTACAAAACGTACATAACT
1 AACTTACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACGTACATAACT
*
75176157 TATATAACTTACATAAATATAT
66 TAGATAACTTACATAAATATAT
* * * * *
75176179 AACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTACATAACTTATATAACT
1 AACTTACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACGTACATAACT
75176244 TAGATAA
66 TAGATAA
75176251 ATATATAATT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 65 1.00
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (87 bp):
AACTTACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACGTACATAACT
TAGATAACTTACATAAATATAT
Found at i:75176286 original size:44 final size:45
Alignment explanation
Indices: 75176206--75176294 Score: 110
Period size: 44 Copynumber: 2.0 Consensus size: 45
75176196 AATATATTTT
* * *
75176206 ATATCATAATTTACATAACTTACATAACTTATATAACTTAGATAA
1 ATATCATAATTTACATAACATACATAACATATATAACTTACATAA
* *
75176251 ATAT-ATAATTTACATAA-ATATATATCATATCATAACTTACATAA
1 ATATCATAATTTACATAACATACATAACATAT-ATAACTTACATAA
75176295 TACTTAAATA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
43 9 0.24
44 25 0.66
45 4 0.11
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.38
Consensus pattern (45 bp):
ATATCATAATTTACATAACATACATAACATATATAACTTACATAA
Found at i:75181485 original size:13 final size:14
Alignment explanation
Indices: 75181469--75181497 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
75181459 TTCTAAATAT
75181469 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
75181482 TTATAATTGTTTAA
1 TTATAATTGTTTAA
75181496 TT
1 TT
75181498 GAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:75181934 original size:21 final size:21
Alignment explanation
Indices: 75181909--75181949 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
75181899 TTAGAGCGGA
75181909 GGCAGCAGAGAGGGAGGCAGC
1 GGCAGCAGAGAGGGAGGCAGC
*
75181930 GGCAGCAGCGAGGGAGGCAG
1 GGCAGCAGAGAGGGAGGCAG
75181950 AGCATAGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.20, G:0.54, T:0.00
Consensus pattern (21 bp):
GGCAGCAGAGAGGGAGGCAGC
Found at i:75182357 original size:43 final size:43
Alignment explanation
Indices: 75182310--75182405 Score: 122
Period size: 43 Copynumber: 2.2 Consensus size: 43
75182300 CCAAAATTAA
* *
75182310 CGGCG-TTTGTGGGAAAAATGCCGCTAAAGGCCACGACTTTTAG
1 CGGCGCTTT-TGGCAAAAACGCCGCTAAAGGCCACGACTTTTAG
** **
75182353 CGGCGCTTTTTTCCCAAACGCCGCTAAAGGCCACGACTTTTAG
1 CGGCGCTTTTGGCAAAAACGCCGCTAAAGGCCACGACTTTTAG
75182396 CGGCGCTTTT
1 CGGCGCTTTT
75182406 TTTAATAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 43 0.93
44 3 0.07
ACGTcount: A:0.21, C:0.27, G:0.26, T:0.26
Consensus pattern (43 bp):
CGGCGCTTTTGGCAAAAACGCCGCTAAAGGCCACGACTTTTAG
Found at i:75188481 original size:64 final size:64
Alignment explanation
Indices: 75188400--75188583 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
75188390 AGACATTATG
* * *
75188400 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATATAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
75188464 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
75188529 AA
63 AA
* * * *
75188531 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
75188584 CAAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 8 0.08
66 16 0.16
67 30 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:75192890 original size:68 final size:67
Alignment explanation
Indices: 75192818--75192965 Score: 176
Period size: 67 Copynumber: 2.2 Consensus size: 67
75192808 CATCATGTGT
* * * *
75192818 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC-AG-CA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
75192880 ATGTAG
62 ATGTAG
* * *
75192886 ACAAGAGAGCTACAGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
75192951 AG
66 AG
75192953 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
75192966 GAGATAAACT
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 3 0.04
67 27 0.39
68 13 0.19
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:75211526 original size:6 final size:6
Alignment explanation
Indices: 75211515--75211547 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
75211505 TAAGATACAC
*
75211515 AGAGGA AGAGGA AGAAGA AGAGGA AGAGGA AGA
1 AGAGGA AGAGGA AGAGGA AGAGGA AGAGGA AGA
75211548 TATTTCCACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (6 bp):
AGAGGA
Found at i:75214960 original size:22 final size:21
Alignment explanation
Indices: 75214917--75214960 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
75214907 TTTTTCTCTC
*
75214917 TATTCTCTTGTTATTTATTGT
1 TATTCTCTTGTTATTTAATGT
75214938 TATT-TCTTGTTAATTTGAATGT
1 TATTCTCTTGTT-ATTT-AATGT
75214960 T
1 T
75214961 TCTGATGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 7 0.35
21 8 0.40
22 5 0.25
ACGTcount: A:0.18, C:0.07, G:0.11, T:0.64
Consensus pattern (21 bp):
TATTCTCTTGTTATTTAATGT
Found at i:75220040 original size:49 final size:46
Alignment explanation
Indices: 75219837--75220051 Score: 151
Period size: 46 Copynumber: 4.6 Consensus size: 46
75219827 TTATGAGAGC
* * * *
75219837 CAGTGTAAGACCATGTCTGGGACATCGCATC-GATATTAAGA-CGAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-CAAGATCTA-T
* * * *
75219883 GCTAGTGTAAGA-CATGTCTGGGACA-CGCATCAGCCT-CGAGA-CGTAAG
1 -C-AGTGTAAGACCATGTCTGGGACATGGCATC-GGCTACAAGATC-T-AT
* *
75219930 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACAAGATGTGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACAAGATCTAT
*
75219975 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACAGATATACTAT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACA-AGAT-CTAT
*
75220022 ACTTGTGTAAGACCATGTCTGGGACATGGC
1 -C-AGTGTAAGACCATGTCTGGGACATGGC
75220052 GTCGATGTTT
Statistics
Matches: 139, Mismatches: 15, Indels: 26
0.77 0.08 0.14
Matches are distributed among these distances:
44 9 0.06
45 21 0.15
46 55 0.40
47 16 0.12
48 12 0.09
49 26 0.19
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACAAGATCTAT
Found at i:75220040 original size:140 final size:139
Alignment explanation
Indices: 75219788--75220047 Score: 330
Period size: 140 Copynumber: 1.9 Consensus size: 139
75219778 CACTTGTGTG
75219788 AGCTAGGGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGT
1 AGCTAGGGTAAGACATGTCTAGGACATGCATCGGCCACA-TATGAGAGCCAGTGTAAGACCATGT
* * *
75219853 CTGGGACATCGCATCGATATTAAGACGAGTGCTAGTGTAAGACATGTCTGGGACACGCATCAGCC
65 CTGGGACATCGCATCGACAATAAGACGAGTACTAGTGTAAGACATGTCTGGGACACGCATCAGCC
75219918 TCGAGACGTA
130 TCGAGACGTA
* * * * *
75219928 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACA-A-GATGTGTCAGTGTAAGACCATGT
1 AGCTAGGGTAAGACATGTCTAGGACATGCATCGGCCACATATGA-GAGCCAGTGTAAGACCATGT
* * * *
75219991 CTGGGACATGGCATCGGCACAGAT-ATACTA-TACTTGTGTAAGACCATGTCTGGGACA
65 CTGGGACATCGCATC-G-ACA-ATAAGACGAGTACTAGTGTAAGA-CATGTCTGGGACA
75220048 TGGCGTCGAT
Statistics
Matches: 103, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
137 2 0.02
138 33 0.32
139 12 0.12
140 55 0.53
141 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (139 bp):
AGCTAGGGTAAGACATGTCTAGGACATGCATCGGCCACATATGAGAGCCAGTGTAAGACCATGTC
TGGGACATCGCATCGACAATAAGACGAGTACTAGTGTAAGACATGTCTGGGACACGCATCAGCCT
CGAGACGTA
Found at i:75227117 original size:30 final size:30
Alignment explanation
Indices: 75227083--75227164 Score: 146
Period size: 30 Copynumber: 2.7 Consensus size: 30
75227073 ATTTTCGGGC
*
75227083 CTAGGGGTAAAATGGTCATTTTGTTAAAGT
1 CTAGGGGCAAAATGGTCATTTTGTTAAAGT
75227113 CTAGGGGCAAAATGGTCATTTTGTTAAAGT
1 CTAGGGGCAAAATGGTCATTTTGTTAAAGT
*
75227143 CTATGGGCAAAATGGTCATTTT
1 CTAGGGGCAAAATGGTCATTTT
75227165 ACCAAAGATA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.35
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTGTTAAAGT
Found at i:75227644 original size:46 final size:46
Alignment explanation
Indices: 75227507--75227720 Score: 186
Period size: 46 Copynumber: 4.6 Consensus size: 46
75227497 TCACTTGTGT
* ** * *
75227507 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCC-AAATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGA
* * ** *
75227553 GAGCCAGTGTAAGACCATGTCGGGGACATGGCATCGGTATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGA
* *
75227601 GTGCTAGTGTAAGACATGTCTGGGATATGCATCGGCCTCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-A
* * * *
75227648 -AGCTAGTGTAAGACATGTCTGGAACATGCACCGG-CTACGAGATGT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGA
*
75227693 G-TC-AGTGTAAGACGATGTCTGGGACATG
1 GAGCTAGTGTAAGAC-ATGTCTGGGACATG
75227721 GCATTAGCAC
Statistics
Matches: 137, Mismatches: 24, Indels: 15
0.78 0.14 0.09
Matches are distributed among these distances:
44 10 0.07
45 16 0.12
46 63 0.46
47 26 0.19
48 21 0.15
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGA
Found at i:75242142 original size:30 final size:30
Alignment explanation
Indices: 75242097--75242156 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
75242087 ATTTAATACG
75242097 AACTTTGGCAAAATTACA-TTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTT-CCCCTA
* * *
75242127 AACTTTTGCATAATTATACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTTCCCCTA
75242157 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTTCCCCTA
Found at i:75246696 original size:49 final size:49
Alignment explanation
Indices: 75246566--75246747 Score: 247
Period size: 49 Copynumber: 3.7 Consensus size: 49
75246556 TCTATTGTGA
* * * ** *
75246566 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCTAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-T
* *
75246617 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
75246666 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
75246715 GGTCGCATGTGTAGTACTATGTGCAGCCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
75246748 TGCGTACCAG
Statistics
Matches: 118, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
49 78 0.66
50 1 0.01
51 39 0.33
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:75250136 original size:49 final size:48
Alignment explanation
Indices: 75250063--75250250 Score: 223
Period size: 49 Copynumber: 3.8 Consensus size: 48
75250053 TAGCCGAAGC
*
75250063 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGTCCAA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGTCCAA
* * * *
75250111 TAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAG
1 T-ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCG-TC-CAA
* * ** *
75250162 TTTTTGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGTCCAA
* *
75250211 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 -TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
75250251 CGTTACCTCA
Statistics
Matches: 115, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
48 1 0.01
49 71 0.62
50 7 0.06
51 36 0.31
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (48 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGTCCAA
Done.