Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 221 of 373
Found at i:75250191 original size:100 final size:100
Alignment explanation
Indices: 75250068--75250253 Score: 336
Period size: 100 Copynumber: 1.9 Consensus size: 100
75250058 GAAGCTATCT
* *
75250068 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGTCCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
75250133 TGCACTTAGTACTACACACGTGATCACAGTTTTTG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTTG
* *
75250168 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
75250233 TGCACTTAGTACTACACACGT
66 TGCACTTAGTACTACACACGT
75250254 TACCTCACAA
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTTG
Found at i:75254655 original size:43 final size:43
Alignment explanation
Indices: 75254486--75254656 Score: 136
Period size: 43 Copynumber: 4.0 Consensus size: 43
75254476 ACATAGGATC
* ** * *
75254486 CGATATGTGATTTTGTGTATGATCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
* * * * *
75254529 TGACT-TATGATTTATGTGTAAGACCACGTCT-GGACATTAGCAT
1 CGA-TATTTGA-TTACGTGTAAGACCACGTCTGGGACGTTGGCAT
* * *
75254572 CG-TATTTGATTTCGTGTAAGATCC-TGTCTGGGATAG-TGGCAT
1 CGATATTTGATTACGTGTAAGA-CCACGTCTGGGA-CGTTGGCAT
* *
75254614 CGATATTTGGTTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
75254657 TGTACGAGCT
Statistics
Matches: 99, Mismatches: 20, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
41 15 0.15
42 19 0.19
43 47 0.47
44 18 0.18
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (43 bp):
CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:75254804 original size:34 final size:32
Alignment explanation
Indices: 75254723--75254786 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
75254713 GCATTCAGAG
75254723 AAAAGAATGAATATATAACAATTCAGGTACGT
1 AAAAGAATGAATATATAACAATTCAGGTACGT
*
75254755 AAAAGAATGAATATATAGCAATTCAGGTACGT
1 AAAAGAATGAATATATAACAATTCAGGTACGT
75254787 TTGAAAAGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.48, C:0.09, G:0.17, T:0.25
Consensus pattern (32 bp):
AAAAGAATGAATATATAACAATTCAGGTACGT
Found at i:75254917 original size:22 final size:22
Alignment explanation
Indices: 75254891--75254962 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
75254881 TGAATTGGAA
75254891 ATATGAGAAATGTATATGAACT
1 ATATGAGAAATGTATATGAACT
*** *
75254913 ATATGA-TTTTTTATAATTGGAA--
1 ATATGAGAAATGTAT-A-T-GAACT
75254935 ATATGAGAAATGTATATGAACT
1 ATATGAGAAATGTATATGAACT
75254957 ATATGA
1 ATATGA
75254963 TTTTTTTAGT
Statistics
Matches: 36, Mismatches: 8, Indels: 12
0.64 0.14 0.21
Matches are distributed among these distances:
20 3 0.08
21 5 0.14
22 20 0.56
23 5 0.14
24 3 0.08
ACGTcount: A:0.43, C:0.03, G:0.17, T:0.38
Consensus pattern (22 bp):
ATATGAGAAATGTATATGAACT
Found at i:75254933 original size:44 final size:44
Alignment explanation
Indices: 75254883--75254968 Score: 172
Period size: 44 Copynumber: 2.0 Consensus size: 44
75254873 TGTGCAAATG
75254883 AATTGGAAATATGAGAAATGTATATGAACTATATGATTTTTTAT
1 AATTGGAAATATGAGAAATGTATATGAACTATATGATTTTTTAT
75254927 AATTGGAAATATGAGAAATGTATATGAACTATATGATTTTTT
1 AATTGGAAATATGAGAAATGTATATGAACTATATGATTTTTT
75254969 TAGTATTTGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.41, C:0.02, G:0.16, T:0.41
Consensus pattern (44 bp):
AATTGGAAATATGAGAAATGTATATGAACTATATGATTTTTTAT
Found at i:75268621 original size:47 final size:47
Alignment explanation
Indices: 75268565--75268707 Score: 259
Period size: 47 Copynumber: 3.0 Consensus size: 47
75268555 GTTGAATTTA
75268565 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
75268612 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
* * *
75268659 AAGCTTGTTAAATTTGCTCTTAACATTTCCGAATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
75268706 AA
1 AA
75268708 AGAAAATTTT
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 93 1.00
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
Found at i:75269648 original size:43 final size:44
Alignment explanation
Indices: 75269510--75269727 Score: 228
Period size: 44 Copynumber: 5.0 Consensus size: 44
75269500 ATATCATACA
* * * * *
75269510 ATACTATTCGGGCCTTTGAGCCTAACAGGCGAAATACCGGTAAG
1 ATACTATTCGGGCCTTCGAGCCTAGCAGGCAAAATGCCGGTGAG
* * * *
75269554 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGGCAGTGAG
1 ATACTATTCGGGCCTTCGAGCCTAGCAGGC-AAAATGCCGGTGAG
* * *
75269599 ATACTATTTGGG-CTTCGAGCCTAGCAGGAAAAATGCTGGTGAG
1 ATACTATTCGGGCCTTCGAGCCTAGCAGGCAAAATGCCGGTGAG
* * * *
75269642 ATACTATTCGGGCCATCGAGCGTAGCAGGCTATAATGCCGGTGAA
1 ATACTATTCGGGCCTTCGAGCCTAGCAGGC-AAAATGCCGGTGAG
*
75269687 ATGA-TA-TCGGG-CTTCGAGCCTAGCAGGCGAAATGCCGGTGA
1 AT-ACTATTCGGGCCTTCGAGCCTAGCAGGCAAAATGCCGGTGA
75269728 ATGAATTTGG
Statistics
Matches: 145, Mismatches: 25, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
42 11 0.08
43 36 0.25
44 63 0.43
45 34 0.23
46 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (44 bp):
ATACTATTCGGGCCTTCGAGCCTAGCAGGCAAAATGCCGGTGAG
Found at i:75269676 original size:88 final size:88
Alignment explanation
Indices: 75269509--75269727 Score: 280
Period size: 88 Copynumber: 2.5 Consensus size: 88
75269499 AATATCATAC
* * * * * *
75269509 AATACTATTCGGGCCTTTGAGCCTAACAGGCGAAATACCGGTAAGATACTATTCGGGCCTTTGAG
1 AATACTATTCGGG-CTTCGAGCCTAGCAGGCGAAATGCCGGTGAGATACTATTCGGGCCATCGAG
*
75269574 CCTAGCAGGCTATAATGGCAGTGA
65 CCTAGCAGGCTATAATGCCAGTGA
* * ** *
75269598 GATACTATTTGGGCTTCGAGCCTAGCAGGAAAAATGCTGGTGAGATACTATTCGGGCCATCGAGC
1 AATACTATTCGGGCTTCGAGCCTAGCAGGCGAAATGCCGGTGAGATACTATTCGGGCCATCGAGC
* *
75269663 GTAGCAGGCTATAATGCCGGTGA
66 CTAGCAGGCTATAATGCCAGTGA
75269686 AATGA-TA-TCGGGCTTCGAGCCTAGCAGGCGAAATGCCGGTGA
1 AAT-ACTATTCGGGCTTCGAGCCTAGCAGGCGAAATGCCGGTGA
75269728 ATGAATTTGG
Statistics
Matches: 110, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
87 31 0.28
88 67 0.61
89 12 0.11
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (88 bp):
AATACTATTCGGGCTTCGAGCCTAGCAGGCGAAATGCCGGTGAGATACTATTCGGGCCATCGAGC
CTAGCAGGCTATAATGCCAGTGA
Found at i:75270287 original size:16 final size:18
Alignment explanation
Indices: 75270256--75270288 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
75270246 AACTCGTCAC
75270256 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
75270274 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
75270289 AGCCTGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:75271610 original size:41 final size:44
Alignment explanation
Indices: 75271565--75271673 Score: 116
Period size: 45 Copynumber: 2.5 Consensus size: 44
75271555 TCCCAAATAG
* *
75271565 GGTCTTACACGAATCA-A-ATA-CGATACCGATGTCCCAGACAT
1 GGTCTTACACGAACCACATATATCGATACCAATGTCCCAGACAT
* * * *
75271606 GGTCTTACACATAACCACATATATTGATGCCAATGTCCCAGACGT
1 GGTCTTACAC-GAACCACATATATCGATACCAATGTCCCAGACAT
*
75271651 GGTCTTACACGAGAACACATATA
1 GGTCTTACACGA-ACCACATATA
75271674 AAAAATCCTA
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
41 10 0.18
42 4 0.07
43 1 0.02
44 4 0.07
45 36 0.65
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.24
Consensus pattern (44 bp):
GGTCTTACACGAACCACATATATCGATACCAATGTCCCAGACAT
Found at i:75274514 original size:48 final size:49
Alignment explanation
Indices: 75274443--75274758 Score: 339
Period size: 48 Copynumber: 6.6 Consensus size: 49
75274433 TAAAGTACCA
*
75274443 ATGCCATGTCCCCA-ACATGGTCTTACA-TGAATC-CATATATCATCGCTG
1 ATGCCATGT-CCCAGACATGGTCTTACACTG-AGCACATATATCATCGCTG
* *
75274491 ATGCCATGTCCAAGACATGGTCTTACACTG-GCACATATATCATTG-TCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAGCACATATATCATCGCT-G
* * * *
75274539 ATGCCATGTCCCGGACATGATCTTACACTG-GCACATACATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAGCACATATATCATCGCTG
*
75274587 ATGCCATGTCCCAGACATGGTCTTACACTG-GCACATATATCATCG-TC
1 ATGCCATGTCCCAGACATGGTCTTACACTGAGCACATATATCATCGCTG
* * * * * *
75274634 ATTGCCATGTCCCAGACATGGTCTTACATTG-GCATACATATTAACGCCG
1 A-TGCCATGTCCCAGACATGGTCTTACACTGAGCACATATATCATCGCTG
* * *
75274683 ATGCCATGTCCCAGACATGGTCTTACAC-AAGCACCTATCTCGGAT-GCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAGCACATATATC--ATCGCTG
*
75274732 ATGCCATGTCCCTGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
75274759 TGGAATCTCA
Statistics
Matches: 227, Mismatches: 31, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
47 6 0.03
48 188 0.83
49 32 0.14
50 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGAGCACATATATCATCGCTG
Found at i:75274607 original size:96 final size:96
Alignment explanation
Indices: 75274443--75274758 Score: 374
Period size: 96 Copynumber: 3.3 Consensus size: 96
75274433 TAAAGTACCA
* * *
75274443 ATGCCATGTCCCCA-ACATGGTCTTACA-T-GAATCCATATATCATCGCTGATGCCATGTCCAAG
1 ATGCCATGT-CCCAGACATGGTCTTACACTGGCA--CATATATCATCGCCGATGCCATGTCCCAG
75274505 ACATGGTCTTACACTGGCACATATATCATTGTCG
63 ACATGGTCTTACACTGGCACATATATCATTGTCG
* * *
75274539 ATGCCATGTCCCGGACATGATCTTACACTGGCACATACATCATCGCCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCGATGCCATGTCCCAGACA
*
75274604 TGGTCTTACACTGGCACATATATCATCGTC-
66 TGGTCTTACACTGGCACATATATCATTGTCG
* * * * *
75274634 ATTGCCATGTCCCAGACATGGTCTTACATTGGCATACATATTAACGCCGATGCCATGTCCCAGAC
1 A-TGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCGATGCCATGTCCCAGAC
** * *
75274699 ATGGTCTTACACAAGCACCTATCTCGGA-TG-CTG
65 ATGGTCTTACACTGGCACATATATC--ATTGTC-G
*
75274732 ATGCCATGTCCCTGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
75274759 TGGAATCTCA
Statistics
Matches: 191, Mismatches: 21, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
95 4 0.02
96 156 0.82
97 27 0.14
98 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCACATATATCATTGTCG
Found at i:75274707 original size:144 final size:143
Alignment explanation
Indices: 75274443--75274760 Score: 376
Period size: 144 Copynumber: 2.2 Consensus size: 143
75274433 TAAAGTACCA
*
75274443 ATGCCATGTCCCCA-ACATGGTCTTACATGAATCCATATATCATCGCTGATGCCATGTCCAAGAC
1 ATGCCATGT-CCCAGACATGGTCTTACATGAA-CCATATATCATCGCTCATGCCATGTCCAAGAC
* ** * * **
75274507 ATGGTCTTACACTGGCACATATATCATTGTCGATGCCATGTCCCGGACATGATCTTACACTGGCA
64 ATGGTCTTACACTGGCACACATATCAACGCCGATGCCATGTCCCAGACATGATCTTACACAAGCA
75274572 CATA-CATC-ATCGCCG
129 CATATC-TCGAT-GCCG
* *
75274587 ATGCCATGTCCCAGACATGGTCTTACACTG-GCACATATATCATCG-TCATTGCCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACA-TGAAC-CATATATCATCGCTCA-TGCCATGTCCAAGA
* * * *
75274650 CATGGTCTTACATTGGCATACATATTAACGCCGATGCCATGTCCCAGACATGGTCTTACACAAGC
63 CATGGTCTTACACTGGCACACATATCAACGCCGATGCCATGTCCCAGACATGATCTTACACAAGC
* *
75274715 ACCTATCTCGGATGCTG
128 ACATATCTC-GATGCCG
*
75274732 ATGCCATGTCCCTGACATGGTCTTACATG
1 ATGCCATGTCCCAGACATGGTCTTACATG
75274761 GAATCTCATT
Statistics
Matches: 150, Mismatches: 17, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
143 7 0.05
144 109 0.73
145 32 0.21
146 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (143 bp):
ATGCCATGTCCCAGACATGGTCTTACATGAACCATATATCATCGCTCATGCCATGTCCAAGACAT
GGTCTTACACTGGCACACATATCAACGCCGATGCCATGTCCCAGACATGATCTTACACAAGCACA
TATCTCGATGCCG
Found at i:75278720 original size:51 final size:51
Alignment explanation
Indices: 75278637--75278783 Score: 204
Period size: 51 Copynumber: 2.9 Consensus size: 51
75278627 GGATACATGA
* * *
75278637 TGGCCTTCACATAGTACCACCCTTGTAGCCAAAGCTATTTTATTCACAAAG
1 TGGCATTCACATAGTACCACACTTGTATCCAAAGCTATTTTATTCACAAAG
* * * *
75278688 TGGCTTTCACACAGTACCACACTTGTATCCAAAGCTATTATATTCATAAAG
1 TGGCATTCACATAGTACCACACTTGTATCCAAAGCTATTTTATTCACAAAG
* * *
75278739 TGGCATTCACATAGTACCACACTTCTGTCCAAAGCTAGTTTATTC
1 TGGCATTCACATAGTACCACACTTGTATCCAAAGCTATTTTATTC
75278784 CTAAGGTTCA
Statistics
Matches: 84, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 84 1.00
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (51 bp):
TGGCATTCACATAGTACCACACTTGTATCCAAAGCTATTTTATTCACAAAG
Found at i:75278844 original size:28 final size:28
Alignment explanation
Indices: 75278807--75278901 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
75278797 GGGAAATTTC
*
75278807 TCACGTAGCACAATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
* * * *
75278835 TCAGTTAGCACATTACCGTGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
75278863 TCACTTAG----ATGCCATGGTCTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
75278887 TCACTTAGCACAATG
1 TCACTTAGCACAATG
75278902 TCATATCCTA
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
24 20 0.38
28 33 0.62
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (28 bp):
TCACTTAGCACAATGCCATGGACTTATT
Found at i:75282387 original size:15 final size:17
Alignment explanation
Indices: 75282357--75282388 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
75282347 TTGATACTTG
75282357 TGAATGTGACTTTGGTA
1 TGAATGTGACTTTGGTA
75282374 TGAAT-TGA-TTTGGTA
1 TGAATGTGACTTTGGTA
75282389 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.03, G:0.28, T:0.44
Consensus pattern (17 bp):
TGAATGTGACTTTGGTA
Found at i:75284223 original size:28 final size:28
Alignment explanation
Indices: 75284191--75284274 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
75284181 AACTTCGATC
75284191 ACGTGTGTAGTACTGAGTGCAGGCTACT
1 ACGTGTGTAGTACTGAGTGCAGGCTACT
* *
75284219 ACGTGTATCAG-A-TG-GT-TAGG-T-C-
1 ACGTGTGT-AGTACTGAGTGCAGGCTACT
*
75284241 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTGAGTGCAGGCTACT
75284269 ACGTGT
1 ACGTGT
75284275 ACTGGATAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 16
0.67 0.08 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 3 0.07
28 14 0.33
29 2 0.05
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTGAGTGCAGGCTACT
Found at i:75284260 original size:50 final size:50
Alignment explanation
Indices: 75284086--75284331 Score: 253
Period size: 49 Copynumber: 4.9 Consensus size: 50
75284076 ATCTATTGTG
* * *
75284086 AGGTCACGTGTGTAGTATTAAGTGTAGGCTACTACGTGTACCTGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
75284136 -GGTCGCATGTGTGGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
75284186 CGATCACGTGTGTAGTACTGAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
**
75284236 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * * *
75284286 -GGTCGCATGTGTAGTATTGAGTGCAGGCTGCTATGCGTACCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
75284332 TCCTTGTCTA
Statistics
Matches: 158, Mismatches: 36, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
49 76 0.48
50 46 0.29
51 36 0.23
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:75284283 original size:101 final size:98
Alignment explanation
Indices: 75284089--75284331 Score: 279
Period size: 100 Copynumber: 2.4 Consensus size: 98
75284079 TATTGTGAGG
* * * * *
75284089 TCACGTGTGTAGTATTAAGTGTAGGCTACTACGTGTACCTGATAATTGGTCGCATGTGTGGTACT
1 TCACGTGTGTAGTATTGAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
*
75284154 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCCGATAA-TT-GA
* * ** *
75284189 TCACGTGTGTAGTACTGAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTATTGAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* ** *
75284254 TAAGTGCAGGCTACTACGTGTACTGGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCCGATAATTGA
* * * * *
75284288 TCGCATGTGTAGTATTGAGTGCAGGCTGCTATGCGTACCAGATA
1 TCACGTGTGTAGTATTGAGTGCAGGCTACTACGTGTACCAGATA
75284332 TCCTTGTCTA
Statistics
Matches: 119, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
99 37 0.31
100 42 0.35
101 40 0.34
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTATTGAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCCGATAATTGA
Found at i:75292641 original size:47 final size:47
Alignment explanation
Indices: 75292589--75293321 Score: 1214
Period size: 47 Copynumber: 15.6 Consensus size: 47
75292579 GATAATTGTG
* *
75292589 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75292636 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75292683 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75292730 ATGTGATAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75292777 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75292824 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75292871 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75292918 ATGTGATAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75292965 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
75293012 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75293059 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75293106 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75293155 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75293202 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
75293249 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75293296 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
75293322 TCCCGAAGGG
Statistics
Matches: 648, Mismatches: 36, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 603 0.93
49 45 0.07
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:75294953 original size:10 final size:10
Alignment explanation
Indices: 75294938--75294963 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
75294928 ACGCATAAAA
75294938 TGTTTTAGGC
1 TGTTTTAGGC
75294948 TGTTTTAGGC
1 TGTTTTAGGC
75294958 TGTTTT
1 TGTTTT
75294964 GTCGTAGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.08, G:0.27, T:0.58
Consensus pattern (10 bp):
TGTTTTAGGC
Found at i:75295687 original size:33 final size:34
Alignment explanation
Indices: 75295620--75295692 Score: 96
Period size: 33 Copynumber: 2.2 Consensus size: 34
75295610 TTTTGTACTG
* *
75295620 ATACTGTTACTGAATTGGGCTAAGGCCTGCACTA
1 ATACTGTTACTGAATAGGGCTAAGGCCTGAACTA
75295654 ATACTGTTACTGAA-AGGGCTAAGGCCCT-AACTA
1 ATACTGTTACTGAATAGGGCTAAGG-CCTGAACTA
*
75295687 AGACTG
1 ATACTG
75295693 GACTGATATT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
33 18 0.51
34 17 0.49
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (34 bp):
ATACTGTTACTGAATAGGGCTAAGGCCTGAACTA
Found at i:75298901 original size:20 final size:20
Alignment explanation
Indices: 75298878--75298921 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
75298868 TGTTACCGAA
* *
75298878 GGCTGTGTGCCGTTATTGTG
1 GGCTGTGTACCGATATTGTG
* *
75298898 GGCTTTGTATCGATATTGTG
1 GGCTGTGTACCGATATTGTG
75298918 GGCT
1 GGCT
75298922 TTCTGCCGAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.09, C:0.14, G:0.36, T:0.41
Consensus pattern (20 bp):
GGCTGTGTACCGATATTGTG
Found at i:75298931 original size:20 final size:20
Alignment explanation
Indices: 75298885--75298931 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
75298875 GAAGGCTGTG
* *
75298885 TGCCGTTATTGTGGGCTTTG
1 TGCCGATATTGTGGGCTTTC
**
75298905 TATCGATATTGTGGGCTTTC
1 TGCCGATATTGTGGGCTTTC
75298925 TGCCGAT
1 TGCCGAT
75298932 TATAGACCCG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.11, C:0.17, G:0.30, T:0.43
Consensus pattern (20 bp):
TGCCGATATTGTGGGCTTTC
Found at i:75301824 original size:6 final size:6
Alignment explanation
Indices: 75301815--75301858 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
75301805 TTGCATTCAC
* *
75301815 ATTCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
75301859 AATCTTTCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 1 0.03
6 30 0.94
7 1 0.03
ACGTcount: A:0.18, C:0.16, G:0.14, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:75304060 original size:16 final size:16
Alignment explanation
Indices: 75304039--75304069 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75304029 CAAATATGGG
*
75304039 CATGACATTTTGCATA
1 CATGACATGTTGCATA
75304055 CATGACATGTTGCAT
1 CATGACATGTTGCAT
75304070 GGGTTGGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:75307333 original size:6 final size:6
Alignment explanation
Indices: 75307315--75307435 Score: 97
Period size: 6 Copynumber: 19.7 Consensus size: 6
75307305 AAGAAACATT
* *
75307315 ATCAGA A-CTAGA ATCAGA ATCAAA ATCAGA ATCA-A GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
75307364 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
75307415 AT-AGA ATCAAA ATCAGA ATCA
1 ATCAGA ATCAGA ATCAGA ATCA
75307436 ATATCAGGTA
Statistics
Matches: 92, Mismatches: 12, Indels: 22
0.73 0.10 0.17
Matches are distributed among these distances:
5 8 0.09
6 71 0.77
7 8 0.09
8 5 0.05
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:75307380 original size:37 final size:31
Alignment explanation
Indices: 75307299--75307454 Score: 190
Period size: 31 Copynumber: 5.1 Consensus size: 31
75307289 TAACCCATTA
* * *
75307299 CAGAATAAGAAACATTATCA-G-AACTAGAAT
1 CAGAATCAGAATCAGTATCAGGTAAC-AGAAT
* * * *
75307329 CAGAATCAAAATCAGAATCAAGTGACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
75307360 CAGAATCAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
* *
75307391 CAAAATCAGAATCAGTATCAGGTAATAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
* *
75307422 CAAAATCAGAATCAATATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
75307453 CA
1 CA
75307455 AAAATCATAA
Statistics
Matches: 110, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
30 15 0.14
31 93 0.85
32 2 0.02
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.19
Consensus pattern (31 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAAT
Found at i:75307644 original size:27 final size:27
Alignment explanation
Indices: 75307602--75307675 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
75307592 GCTAAGTTAT
*
75307602 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGACAGAGCCACCAGATA
75307629 CAGATATTGT-AGCAGAGCCACCAGA-A
1 CAGATATTGTGA-CAGAGCCACCAGATA
* * * *
75307655 TAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGACAGAGCCAC
75307676 TTAACAGAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 18 0.45
27 22 0.55
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGACAGAGCCACCAGATA
Found at i:75307673 original size:26 final size:27
Alignment explanation
Indices: 75307620--75307675 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
75307610 GTGACAGAGT
* *
75307620 CACCAGATACAGATATTGTAGCAGAGC
1 CACCAGATACAGATAATGTAGCAAAGC
* *
75307647 CACCAGA-ATAGATAATGTGGCAAAGC
1 CACCAGATACAGATAATGTAGCAAAGC
75307673 CAC
1 CAC
75307676 TTAACAGAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTAGCAAAGC
Found at i:75308381 original size:27 final size:27
Alignment explanation
Indices: 75308352--75308519 Score: 237
Period size: 27 Copynumber: 6.2 Consensus size: 27
75308342 AGGTATCTCA
* *
75308352 GTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTG
*
75308379 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTG
*
75308406 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTG
**
75308433 GTAATTCTACCCTACAGGGGTATTGCG
1 GTAATTCTACCCTACAGGGGTATTTTG
* * *
75308460 ATAATTCTATCCTACAGGAGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTG
* *
75308487 GTATTTCTACCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTG
75308514 GTAATT
1 GTAATT
75308520 TTGTAAATCG
Statistics
Matches: 126, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTTG
Found at i:75308418 original size:54 final size:54
Alignment explanation
Indices: 75308324--75308519 Score: 250
Period size: 54 Copynumber: 3.6 Consensus size: 54
75308314 AGGGGCAAAA
* * * * * *
75308324 TGGTAATTTTACCCCACA-AGGTATCTCAGTAATTCCACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
*
75308377 TAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
* * * * *
75308431 CGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTATCCTACAGGAGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
* * *
75308485 TGGTATTTCTACCCTACAAGGGTATTTTGGTAATT
1 TGGTAATTCTACCCTACAGGGGTATTTCGGTAATT
75308520 TTGTAAATCG
Statistics
Matches: 123, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
53 15 0.12
54 108 0.88
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.35
Consensus pattern (54 bp):
TGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
Found at i:75308448 original size:81 final size:80
Alignment explanation
Indices: 75308325--75308519 Score: 239
Period size: 81 Copynumber: 2.4 Consensus size: 80
75308315 GGGGCAAAAT
* * * * * *
75308325 GGTAATTTTACCCCACAAGGTATCTCAGTAATTCCACCCTACAGGGGTATTTTAG-TAATTCTAC
1 GGTAATTCTACCCTACAGGGTATTTCGGTAATTCCACCCTACAGGGGTA-TTGAGATAATTCTAC
*
75308389 CCTACAGGGGTATTTC
65 CCTACAGGAGTATTTC
* * *
75308405 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCTAT
1 GGTAATTCTACCCTACA-GGGTATTTCGGTAATTCCACCCTACAGGGGTATTGAGATAATTCTAC
*
75308470 CCTACAGGAGTATTTT
65 CCTACAGGAGTATTTC
* *
75308486 GGTATTTCTACCCTACAAGGGTATTTTGGTAATT
1 GGTAATTCTACCCTAC-AGGGTATTTCGGTAATT
75308520 TTGTAAATCG
Statistics
Matches: 99, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
80 18 0.18
81 80 0.81
82 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (80 bp):
GGTAATTCTACCCTACAGGGTATTTCGGTAATTCCACCCTACAGGGGTATTGAGATAATTCTACC
CTACAGGAGTATTTC
Found at i:75308533 original size:27 final size:27
Alignment explanation
Indices: 75308503--75308796 Score: 204
Period size: 27 Copynumber: 10.9 Consensus size: 27
75308493 CTACCCTACA
**
75308503 AGGGTATTTTGGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
**** * * **
75308530 AGGGTAAAACGATAA-TTTATTAAATTA
1 AGGGTATTTTGGTAATTTTA-CAAATCG
* *
75308557 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* *** **
75308584 AGGGTATATCAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACAAATCG
** * *
75308611 AGGGTATTTCAGTAATTTCACAAAT-T
1 AGGGTATTTTGGTAATTTTACAAATCG
75308637 AGGGGTATTTTGGTAATTTTACAAACTCG
1 A-GGGTATTTTGGTAATTTTACAAA-TCG
*
75308666 -GGGTATTTTGGTAATTTTACAAA-CTA
1 AGGGTATTTTGGTAATTTTACAAATC-G
*
75308692 AGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGTATTTTGGTAATTTTACAAATCG
* *
75308718 AGGGGTATTTTGGTAATTTTACAAACCA
1 A-GGGTATTTTGGTAATTTTACAAATCG
** * * *
75308746 AGGGTATTTTATTGATTATACAAA-CC
1 AGGGTATTTTGGTAATTTTACAAATCG
*
75308772 AGGGGTATTTTGGTAATTTGACAAA
1 A-GGGTATTTTGGTAATTTTACAAA
75308797 CTAAAGTATT
Statistics
Matches: 211, Mismatches: 46, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
25 1 0.00
26 7 0.03
27 196 0.93
28 7 0.03
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAATCG
Found at i:75308768 original size:81 final size:81
Alignment explanation
Indices: 75308558--75308799 Score: 254
Period size: 81 Copynumber: 3.0 Consensus size: 81
75308548 ATTAAATTAA
* * * * * * *** * **
75308558 GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATATCAATAATTTTACAGGTCGAGGGTATTTCA
1 GGGTATTTTGGTAATTTTACAAACTC-AGGGTATTTTAGTAATTATACAAACCAAGGGTATTTTG
*
75308622 GTAATTTCACAAATTAG
65 GTAATTTCACAAACTAG
* * * *
75308639 GGGTATTTTGGTAATTTTACAAACTCGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACTCAGGGTATTTTAGTAATTATACAAACCAAGGGTATTTTGG
*
75308704 TAATTTTACAAACTAG
66 TAATTTCACAAACTAG
* * *
75308720 GGGTATTTTGGTAATTTTACAAAC-CAAGGGTATTTTATTGATTATACAAACCAGGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACTC-AGGGTATTTTAGTAATTATACAAACCAAGGGTATTTTG
*
75308784 GTAATTTGACAAACTA
65 GTAATTTCACAAACTA
75308800 AAGTATTCTA
Statistics
Matches: 135, Mismatches: 24, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
80 1 0.01
81 130 0.96
82 4 0.03
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTCAGGGTATTTTAGTAATTATACAAACCAAGGGTATTTTGG
TAATTTCACAAACTAG
Found at i:75308797 original size:27 final size:27
Alignment explanation
Indices: 75308612--75308797 Score: 230
Period size: 27 Copynumber: 6.9 Consensus size: 27
75308602 TACAGGTCGA
** * **
75308612 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
75308639 GGGTATTTTGGTAATTTTACAAACTC-G
1 GGGTATTTTGGTAATTTTACAAAC-CAG
* *
75308666 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
75308693 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
75308720 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
75308747 GGGTATTTTATTGATTATACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
75308774 GGGTATTTTGGTAATTTGACAAAC
1 GGGTATTTTGGTAATTTTACAAAC
75308798 TAAAGTATTC
Statistics
Matches: 137, Mismatches: 20, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:75310757 original size:6 final size:6
Alignment explanation
Indices: 75310739--75310860 Score: 74
Period size: 6 Copynumber: 19.8 Consensus size: 6
75310729 AAGAAACATT
* * *
75310739 ATCAGA A-CTAGA ATCAGA ATCAAA ATCTGA ATCA-A GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
75310788 ATCA-A TATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA -ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* *
75310838 ATCAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCAGA ATCAG
75310861 GTAACAGAAT
Statistics
Matches: 90, Mismatches: 13, Indels: 26
0.70 0.10 0.20
Matches are distributed among these distances:
5 8 0.09
6 69 0.77
7 8 0.09
8 4 0.04
9 1 0.01
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:75310806 original size:19 final size:19
Alignment explanation
Indices: 75310784--75310848 Score: 63
Period size: 19 Copynumber: 3.8 Consensus size: 19
75310774 GTGACAGAAT
75310784 CAGAATCAATATCAGGTAA
1 CAGAATCAATATCAGGTAA
75310803 CAGAATCAA-A--A--T--
1 CAGAATCAATATCAGGTAA
*
75310815 CAGAATCAGTATCAGGTAA
1 CAGAATCAATATCAGGTAA
*
75310834 CAGAATCAAAATCAG
1 CAGAATCAATATCAG
75310849 AATCAGTATC
Statistics
Matches: 36, Mismatches: 3, Indels: 14
0.68 0.06 0.26
Matches are distributed among these distances:
12 8 0.22
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 22 0.61
ACGTcount: A:0.49, C:0.17, G:0.15, T:0.18
Consensus pattern (19 bp):
CAGAATCAATATCAGGTAA
Found at i:75310816 original size:31 final size:31
Alignment explanation
Indices: 75310781--75310883 Score: 179
Period size: 31 Copynumber: 3.3 Consensus size: 31
75310771 CAAGTGACAG
*
75310781 AATCAGAATCAATATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
75310812 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
*
75310843 AATCAGAATCAGTATCAGGTAACAGAATAAAA
1 AATCAGAATCAGTATCAGGTAACAGAAT-CAA
75310875 AATCAGAAT
1 AATCAGAAT
75310884 GTGACTGCAA
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
31 58 0.84
32 11 0.16
ACGTcount: A:0.51, C:0.15, G:0.15, T:0.19
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:75310823 original size:25 final size:26
Alignment explanation
Indices: 75310753--75310854 Score: 102
Period size: 25 Copynumber: 3.8 Consensus size: 26
75310743 GAACTAGAAT
* * *
75310753 CAGAATCAAAATCTGA-ATCAAGTGA
1 CAGAATCAAAATCAGATATCAGGTAA
*
75310778 CAGAATCAGAATCA-ATATCAGGTAA
1 CAGAATCAAAATCAGATATCAGGTAA
75310803 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAG----A-TATCAGGTAA
75310834 CAGAATCAAAATCAGA-ATCAG
1 CAGAATCAAAATCAGATATCAG
75310855 TATCAGGTAA
Statistics
Matches: 65, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
24 1 0.02
25 37 0.57
27 1 0.02
30 1 0.02
31 25 0.38
ACGTcount: A:0.49, C:0.17, G:0.16, T:0.19
Consensus pattern (26 bp):
CAGAATCAAAATCAGATATCAGGTAA
Found at i:75311091 original size:26 final size:27
Alignment explanation
Indices: 75311038--75311093 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
75311028 ATGACAGAGT
* *
75311038 CACCAGATACAGATATTGTAGCAGAGC
1 CACCAGATACAGATAATGTAGCAAAGC
*
75311065 CACCAGA-ACAGATAATGTGGCAAAGC
1 CACCAGATACAGATAATGTAGCAAAGC
75311091 CAC
1 CAC
75311094 TTAACAGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.39, C:0.25, G:0.21, T:0.14
Consensus pattern (27 bp):
CACCAGATACAGATAATGTAGCAAAGC
Found at i:75311280 original size:22 final size:21
Alignment explanation
Indices: 75311252--75311316 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
75311242 GCAAATACGT
*
75311252 TTGGCACACAGCCATCATCAGG
1 TTGGCACAAAGCCAT-ATCAGG
* * *
75311274 TTGGCACAGAGCAATATGTAGG
1 TTGGCACAAAGCCATAT-CAGG
*
75311296 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCAT-ATCAG
75311317 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (21 bp):
TTGGCACAAAGCCATATCAGG
Found at i:75311800 original size:27 final size:27
Alignment explanation
Indices: 75311742--75311964 Score: 232
Period size: 27 Copynumber: 8.3 Consensus size: 27
75311732 AGGGGCAAAA
* * * *
75311742 TGGTAATTTTACCCCACA-AGGTATCT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
75311768 CGGTAATTCCACTCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
75311795 TAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
75311822 TGGTAATTCTACCCTATAGTGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
75311849 CGGTAATTCTACCCTACAGTGGTATTG
1 TGGTAATTCTACCCTACAGGGGTATTT
* * * *
75311876 CGATAATTCTACCTTAGAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
75311903 CGGTAATTCTACCCTACAGGGGCATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
75311930 TGGTATTTCTACCCTACAAGGATATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
75311957 TGGTAATT
1 TGGTAATT
75311965 TTGTAAATCG
Statistics
Matches: 164, Mismatches: 32, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
26 13 0.08
27 151 0.92
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAGGGGTATTT
Found at i:75312017 original size:27 final size:27
Alignment explanation
Indices: 75311955--75312020 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
75311945 ACAAGGATAT
* *
75311955 TTTGGTAATTTTGTAAATCGAGGGTAA
1 TTTGGTAATTTTGTAAATCAAGCGTAA
*** * *
75311982 AACGATAATTTTGTAAATCAAGCGTAC
1 TTTGGTAATTTTGTAAATCAAGCGTAA
75312009 TTTGGTAATTTT
1 TTTGGTAATTTT
75312021 ACAAGTCGAG
Statistics
Matches: 28, Mismatches: 11, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
TTTGGTAATTTTGTAAATCAAGCGTAA
Found at i:75312269 original size:27 final size:27
Alignment explanation
Indices: 75312009--75312271 Score: 262
Period size: 27 Copynumber: 9.7 Consensus size: 27
75311999 TCAAGCGTAC
* *
75312009 TTTGGTAATTTTAC-AAGTCGAGGGTAT
1 TTTGGTAATTTTACAAACTAG-GGGTAT
** ** *
75312036 TTTAATAATTTTAC-AGGTCGAGGGTAT
1 TTTGGTAATTTTACAAACTAG-GGGTAT
* *
75312063 TTTTGTAATTTCACAAA-TCAGGGGTAT
1 TTTGGTAATTTTACAAACT-AGGGGTAT
*
75312090 TTTGGTAATTTTACAAATTAGGGGTAT
1 TTTGGTAATTTTACAAACTAGGGGTAT
* *
75312117 TTTGATAATTTTACAAACTAAGGGTAT
1 TTTGGTAATTTTACAAACTAGGGGTAT
75312144 TTTGGTAATTTTACAAACTAGGGGTAT
1 TTTGGTAATTTTACAAACTAGGGGTAT
*
75312171 TTTGGTAATTTTACAAACTAGGGGCAT
1 TTTGGTAATTTTACAAACTAGGGGTAT
* * **
75312198 TTTGGTAATTTTATAAACCAACGGTAT
1 TTTGGTAATTTTACAAACTAGGGGTAT
** * * *
75312225 TTTATTGATTATACAAACCAGGGGTAT
1 TTTGGTAATTTTACAAACTAGGGGTAT
* *
75312252 TTTGGTAATTTGATAAACTA
1 TTTGGTAATTTTACAAACTA
75312272 AAGTATTCTA
Statistics
Matches: 198, Mismatches: 35, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
27 195 0.98
28 3 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
TTTGGTAATTTTACAAACTAGGGGTAT
Found at i:75315083 original size:39 final size:39
Alignment explanation
Indices: 75315029--75315342 Score: 474
Period size: 39 Copynumber: 8.2 Consensus size: 39
75315019 TAATGGAGAA
75315029 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
75315068 TTATATCTGGGCTAAG-CCCGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
** *
75315106 TTATATCCGGGAGAAGTCCCGAAGTCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
75315145 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
75315184 TTATAT-CTGGCTAAG-CCCGAAGGTATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
75315221 TTATATCCGGGCTAAGT-CCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
75315259 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
75315298 TTATATCCGGGCTAAGCCCCAAAGGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
75315337 TTATAT
1 TTATAT
75315343 TCAGGCTTAA
Statistics
Matches: 247, Mismatches: 24, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
37 26 0.11
38 84 0.34
39 137 0.55
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:75315127 original size:77 final size:78
Alignment explanation
Indices: 75315029--75315342 Score: 465
Period size: 77 Copynumber: 4.1 Consensus size: 78
75315019 TAATGGAGAA
*
75315029 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCTGGGCTAAG-CCCGAAGGC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGC
*
75315093 ATTTGTGCTGGTG
66 ATTCGTGCTGGTG
** * * *
75315106 TTATATCCGGGAGAAGTCCCGAAGTCATTCGTGCTGGTGTTATATCCGAGCTAAGTCCCGAAGGC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGC
75315171 ATTCGTGCTGGTG
66 ATTCGTGCTGGTG
* * * *
75315184 TTATAT-CTGGCTAAG-CCCGAAGGTATTTGTGCTGGTGTTATATCCGGGCTAAG-TCCGAAGGC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGC
75315246 ATTCGTGCTGGTG
66 ATTCGTGCTGGTG
* *
75315259 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCAAAGGC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGC
* *
75315324 ATTCGTGCTGATA
66 ATTCGTGCTGGTG
75315337 TTATAT
1 TTATAT
75315343 TCAGGCTTAA
Statistics
Matches: 212, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
75 27 0.13
76 42 0.20
77 92 0.43
78 51 0.24
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (78 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGC
ATTCGTGCTGGTG
Found at i:75315324 original size:153 final size:155
Alignment explanation
Indices: 75315028--75315342 Score: 481
Period size: 153 Copynumber: 2.0 Consensus size: 155
75315018 ATAATGGAGA
*
75315028 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCTGGGCTAAGCCCGAAGGC
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCGAAGGC
* * *
75315093 ATTTGTGCTGGTGTTATATCCGGGAGAAGTCCCGAAGTCATTCGTGCTGGTGTTATATCCGAGCT
66 ATTCGTGCTGGTGTTATATCCAGGAGAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGAGCT
* * *
75315158 AAGTCCCGAAGGCATTCGTGCTGGT
131 AAGCCCCAAAGGCATTCGTGCTGAT
* * * * *
75315183 GTTATAT-CTGGCTAAG-CCCGAAGGTATTTGTGCTGGTGTTATATCCGGGCTAAGTCCGAAGGC
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCGAAGGC
** *
75315246 ATTCGTGCTGGTGTTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCT
66 ATTCGTGCTGGTGTTATATCCAGGAGAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGAGCT
75315311 AAGCCCCAAAGGCATTCGTGCTGAT
131 AAGCCCCAAAGGCATTCGTGCTGAT
75315336 ATTATAT
1 ATTATAT
75315343 TCAGGCTTAA
Statistics
Matches: 144, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
153 130 0.90
154 8 0.06
155 6 0.04
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.30
Consensus pattern (155 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCGAAGGC
ATTCGTGCTGGTGTTATATCCAGGAGAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGAGCT
AAGCCCCAAAGGCATTCGTGCTGAT
Found at i:75321247 original size:39 final size:39
Alignment explanation
Indices: 75321193--75321485 Score: 417
Period size: 39 Copynumber: 7.3 Consensus size: 39
75321183 TAATGGAGAA
75321193 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
75321232 TTATATCCGGGCTAAG-CCCTGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCC-GAAGGCATTCGTGCTGGTG
* *
75321271 TTATATCCGGGCTAAGTCCTGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
75321310 TTATATCCGAGCTAAGTCTCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
75321349 TTATATCCGGGCTAAGCCCCAAAGGCATTCGTGCTGGTGTTAGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC------T-GGTG
75321395 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
75321434 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
75321473 TTATATTCGGGCT
1 TTATATCCGGGCT
75321486 TAAAGTCCTG
Statistics
Matches: 230, Mismatches: 15, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
38 3 0.01
39 187 0.81
40 3 0.01
45 1 0.00
46 36 0.16
ACGTcount: A:0.19, C:0.22, G:0.30, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:75321449 original size:85 final size:85
Alignment explanation
Indices: 75321306--75321471 Score: 305
Period size: 85 Copynumber: 2.0 Consensus size: 85
75321296 CATTTGTGCT
*
75321306 GGTGTTATATCCGAGCTAAGTCTCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCAA
1 GGTGTTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCAA
75321371 AGGCATTCGTGCTGGTGTTA
66 AGGCATTCGTGCTGGTGTTA
* *
75321391 GGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGA
1 GGTGTTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCAA
75321456 AGGCATTCGTGCTGGT
66 AGGCATTCGTGCTGGT
75321472 ATTATATTCG
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 78 1.00
ACGTcount: A:0.19, C:0.22, G:0.31, T:0.28
Consensus pattern (85 bp):
GGTGTTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCAA
AGGCATTCGTGCTGGTGTTA
Found at i:75323361 original size:20 final size:20
Alignment explanation
Indices: 75323338--75323398 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
75323328 TGTGTCCCGT
75323338 TATTGTGGGCTTCGTATCGA
1 TATTGTGGGCTTCGTATCGA
*
75323358 TATTGTGGGCTTCGTATTGA
1 TATTGTGGGCTTCGTATCGA
*
75323378 TATTGTGGGCTTCGTGTCGA
1 TATTGTGGGCTTCGTATCGA
75323398 T
1 T
75323399 TATAGACCTG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.13, C:0.13, G:0.31, T:0.43
Consensus pattern (20 bp):
TATTGTGGGCTTCGTATCGA
Found at i:75325231 original size:18 final size:18
Alignment explanation
Indices: 75325208--75325263 Score: 85
Period size: 18 Copynumber: 3.1 Consensus size: 18
75325198 GGCCTTGGCC
75325208 CATTGCAGTAACAGTAAA
1 CATTGCAGTAACAGTAAA
* *
75325226 CATTGCAGTCACAGTAAT
1 CATTGCAGTAACAGTAAA
*
75325244 CAGTGCAGTAACAGTAAA
1 CATTGCAGTAACAGTAAA
75325262 CA
1 CA
75325264 GTATGCAAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (18 bp):
CATTGCAGTAACAGTAAA
Found at i:75328208 original size:53 final size:55
Alignment explanation
Indices: 75328145--75328271 Score: 165
Period size: 53 Copynumber: 2.4 Consensus size: 55
75328135 ACATACATCA
* *
75328145 CATAGGGGCAAAATAGTCATCCTACCACATAAGGGCAAAAT-AGTCA-TTT-ACCT
1 CATAAGGGCAAAATAGTCATCCTACCACATAAGGGCAAAATCA-TCATTTTAACAT
**
75328198 CATAAGGGCAAAACT-GTCATTTTACCACATAAGGGCAAAATCATCATTTTAACAT
1 CATAAGGGCAAAA-TAGTCATCCTACCACATAAGGGCAAAATCATCATTTTAACAT
75328253 -ATAAGGGCAAAATAGTCAT
1 CATAAGGGCAAAATAGTCAT
75328272 TTTACCTTAC
Statistics
Matches: 65, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
53 40 0.62
54 22 0.34
55 3 0.05
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (55 bp):
CATAAGGGCAAAATAGTCATCCTACCACATAAGGGCAAAATCATCATTTTAACAT
Found at i:75328286 original size:27 final size:27
Alignment explanation
Indices: 75328143--75328277 Score: 177
Period size: 27 Copynumber: 5.0 Consensus size: 27
75328133 AAACATACAT
* **
75328143 CACATAGGGGCAAAATAGTCATCCTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
75328170 CACATAAGGGCAAAATAGTCA-TTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
*
75328196 CTCATAAGGGCAAAACT-GTCATTTTAC
1 CACATAAGGGCAAAA-TAGTCATTTTAC
*
75328223 CACATAAGGGCAAAATCA-TCATTTTAA
1 CACATAAGGGCAAAAT-AGTCATTTTAC
*
75328250 CATATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
75328277 C
1 C
75328278 TTACAAGGGT
Statistics
Matches: 95, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
26 23 0.24
27 72 0.76
ACGTcount: A:0.39, C:0.21, G:0.15, T:0.25
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Found at i:75328351 original size:81 final size:81
Alignment explanation
Indices: 75328266--75328441 Score: 203
Period size: 81 Copynumber: 2.2 Consensus size: 81
75328256 AGGGCAAAAT
*
75328266 AGTCATTTTACCTTACAAGGGTATCACAGTCATTTTACCCTACAAGGGTAT-TACAGTCATTTCA
1 AGTCATTTTACCTTACAAGGGTATCACAGTCAATTTACCCTACAAGGGTATGT-CAGTCATTTCA
75328330 CCCTATGGGGG-TATTTC
65 CCCTA-GGGGGCTATTTC
* * ** ** *** *
75328347 AGTCATCTTACCCTACTGGGGTATTTCAGTCAATTTACCCTATGGGGGTATGTCAGTCATTTTAC
1 AGTCATTTTACCTTACAAGGGTATCACAGTCAATTTACCCTACAAGGGTATGTCAGTCATTTCAC
75328412 CCTAGGGGGCTATTTC
66 CCTAGGGGGCTATTTC
* *
75328428 GGTCATTCTACCTT
1 AGTCATTTTACCTT
75328442 CTGGCCCAAT
Statistics
Matches: 78, Mismatches: 15, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
80 5 0.06
81 72 0.92
82 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (81 bp):
AGTCATTTTACCTTACAAGGGTATCACAGTCAATTTACCCTACAAGGGTATGTCAGTCATTTCAC
CCTAGGGGGCTATTTC
Found at i:75328420 original size:27 final size:27
Alignment explanation
Indices: 75328266--75328439 Score: 179
Period size: 27 Copynumber: 6.4 Consensus size: 27
75328256 AGGGCAAAAT
* ** **
75328266 AGTCATTTTACCTTACAAGGGTATCAC
1 AGTCATTTTACCCTACGGGGGTATTTC
** *
75328293 AGTCATTTTACCCTACAAGGGTATTAC
1 AGTCATTTTACCCTACGGGGGTATTTC
* *
75328320 AGTCATTTCACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTACGGGGGTATTTC
* *
75328347 AGTCATCTTACCCTACTGGGGTATTTC
1 AGTCATTTTACCCTACGGGGGTATTTC
* * *
75328374 AGTCAATTTACCCTATGGGGGTATGTC
1 AGTCATTTTACCCTACGGGGGTATTTC
75328401 AGTCATTTTACCCTA-GGGGGCTATTTC
1 AGTCATTTTACCCTACGGGGG-TATTTC
* *
75328428 GGTCATTCTACC
1 AGTCATTTTACC
75328440 TTCTGGCCCA
Statistics
Matches: 126, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 5 0.04
27 121 0.96
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
AGTCATTTTACCCTACGGGGGTATTTC
Found at i:75331263 original size:18 final size:18
Alignment explanation
Indices: 75331240--75331294 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 18
75331230 CTTGGCCCAT
*
75331240 TGCAGTAATAGTAAATAG
1 TGCAGTAATAGTAAACAG
* * *
75331258 TGCAGTCACAGTAACCAG
1 TGCAGTAATAGTAAACAG
75331276 TGCAGTAATAGTAAACAG
1 TGCAGTAATAGTAAACAG
75331294 T
1 T
75331295 ATGCAAGTCC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.24
Consensus pattern (18 bp):
TGCAGTAATAGTAAACAG
Found at i:75331694 original size:27 final size:27
Alignment explanation
Indices: 75331623--75331740 Score: 103
Period size: 27 Copynumber: 4.4 Consensus size: 27
75331613 TACATCACAT
* * ** *
75331623 AGGGAAAAATAGTCATCCTACCACATA
1 AGGGCAAAATCGTCATTTTACCTCATA
* *
75331650 AGGGTAAAATAGTCATTTTACCTCATA
1 AGGGCAAAATCGTCATTTTACCTCATA
* * * *
75331677 AGGGCAAAACCGTGATTTTACATAATA
1 AGGGCAAAATCGTCATTTTACCTCATA
*
75331704 ATGGCAAAATCGTCATTTTAACC-CATA
1 AGGGCAAAATCGTCATTTT-ACCTCATA
*
75331731 CGGGCAAAAT
1 AGGGCAAAAT
75331741 AATAATTTTA
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
27 71 0.97
28 2 0.03
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (27 bp):
AGGGCAAAATCGTCATTTTACCTCATA
Found at i:75331816 original size:54 final size:52
Alignment explanation
Indices: 75331758--75331919 Score: 166
Period size: 54 Copynumber: 3.0 Consensus size: 52
75331748 TTATCTTACA
* * *
75331758 GGGGTATTACAGTCATTTTACCCTATCAGGATATTTCGGTCAATTTACCCTATG
1 GGGGTATTTC-GTCATTTTACCCTATC-GGATATTTCGATCATTTTACCCTATG
* * **
75331812 GGGGTATTTTTGTCATTTTACCCTAT-GGAGTATTTCGATCATTTTACCTTACA
1 GGGGTA-TTTCGTCATTTTACCCTATCGGA-TATTTCGATCATTTTACCCTATG
* *
75331865 GGGGTATTTCGTTCATTTTACCTTA-CGGGGGTATTTCGATCATTTTACCCTATG
1 GGGGTATTTCG-TCATTTTACCCTATC--GGATATTTCGATCATTTTACCCTATG
75331919 G
1 G
75331920 CCCAGAATGG
Statistics
Matches: 89, Mismatches: 13, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
52 7 0.08
53 36 0.40
54 42 0.47
55 4 0.04
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (52 bp):
GGGGTATTTCGTCATTTTACCCTATCGGATATTTCGATCATTTTACCCTATG
Found at i:75331844 original size:26 final size:27
Alignment explanation
Indices: 75331769--75331917 Score: 112
Period size: 27 Copynumber: 5.6 Consensus size: 27
75331759 GGGTATTACA
75331769 GTCATTTTACCCTATCAGGA-TA-TTTC
1 GTCATTTTACCCTAT-AGGAGTATTTTC
* * * *
75331795 GGTCAATTTACCCTATGGGGGTATTTTT
1 -GTCATTTTACCCTATAGGAGTATTTTC
75331823 GTCATTTTACCCTAT-GGAGTA-TTTC
1 GTCATTTTACCCTATAGGAGTATTTTC
* * *
75331848 GATCATTTTACCTTACAGGGGTA-TTTC
1 G-TCATTTTACCCTATAGGAGTATTTTC
* ** *
75331875 GTTCATTTTACCTTACGGGGGTA-TTTC
1 G-TCATTTTACCCTATAGGAGTATTTTC
75331902 GATCATTTTACCCTAT
1 G-TCATTTTACCCTAT
75331918 GGCCCAGAAT
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
25 4 0.04
26 19 0.18
27 77 0.75
28 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.17, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGAGTATTTTC
Found at i:75331895 original size:80 final size:80
Alignment explanation
Indices: 75331770--75331919 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
75331760 GGTATTACAG
* *
75331770 TCATTTTACCCTATCAGGATATTTCGGTCAATTTACCCTATGGGGGTATTTTTG-TCATTTTACC
1 TCATTTTACCCTATCAGGATATTTCGGTCAATTTACCCTACGGGGGTA-TTTCGATCATTTTACC
75331834 CTATGGAGTATTTCGA
65 CTATGGAGTATTTCGA
* * * * *
75331850 TCATTTTACCTTA-CAGGGGTATTTCGTTCATTTTACCTTACGGGGGTATTTCGATCATTTTACC
1 TCATTTTACCCTATCA-GGATATTTCGGTCAATTTACCCTACGGGGGTATTTCGATCATTTTACC
75331914 CTATGG
65 CTATGG
75331920 CCCAGAATGG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 6 0.10
80 55 0.90
ACGTcount: A:0.20, C:0.19, G:0.18, T:0.43
Consensus pattern (80 bp):
TCATTTTACCCTATCAGGATATTTCGGTCAATTTACCCTACGGGGGTATTTCGATCATTTTACCC
TATGGAGTATTTCGA
Found at i:75341637 original size:24 final size:23
Alignment explanation
Indices: 75341608--75341670 Score: 81
Period size: 24 Copynumber: 2.7 Consensus size: 23
75341598 AACCGAATTT
* * *
75341608 GCACACATAGTGCTTATTACACTC
1 GCACACATAGTGCATAGTAAAC-C
75341632 GCACACATAGTGCCATAGTAAACC
1 GCACACATAGTG-CATAGTAAACC
75341656 GCACACATAGTGCAT
1 GCACACATAGTGCAT
75341671 TGGATTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
23 3 0.09
24 25 0.71
25 7 0.20
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (23 bp):
GCACACATAGTGCATAGTAAACC
Found at i:75343252 original size:32 final size:32
Alignment explanation
Indices: 75343216--75343279 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
75343206 TAAAAATGAC
75343216 CAAATTAATGCTTGAAACTTTCACACATACAT
1 CAAATTAATGCTTGAAACTTTCACACATACAT
75343248 CAAATTAATGCTTGAAACTTTCACACATACAT
1 CAAATTAATGCTTGAAACTTTCACACATACAT
75343280 TTACTCACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.41, C:0.22, G:0.06, T:0.31
Consensus pattern (32 bp):
CAAATTAATGCTTGAAACTTTCACACATACAT
Found at i:75347792 original size:39 final size:40
Alignment explanation
Indices: 75347747--75347834 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 40
75347737 CGGGGTTTAG
* * *
75347747 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
75347786 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
75347826 CCGGATATA
1 CCGGATATA
75347835 GTCGCTAGCA
Statistics
Matches: 39, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
39 15 0.38
40 24 0.62
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:75347905 original size:41 final size:40
Alignment explanation
Indices: 75347770--75347914 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
75347760 CTCGCACAAG
* * * * *
75347770 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
75347810 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
75347850 GCCTT-TGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
*
75347891 GCCTTCGGGACTTAGCCTGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
75347915 TATTCGAGTA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.65
41 25 0.28
42 3 0.03
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:75357872 original size:47 final size:47
Alignment explanation
Indices: 75357821--75358061 Score: 374
Period size: 47 Copynumber: 5.1 Consensus size: 47
75357811 TTAGGATTTT
*
75357821 ATGTGATGAACGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
75357868 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGTCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
75357915 ATATGATGAATATGAACATGCATATATGTGAGAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75357962 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
75358009 ATATGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
75358056 ATGTGA
1 ATGTGA
75358062 AATATGTATG
Statistics
Matches: 173, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 173 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:75357931 original size:94 final size:94
Alignment explanation
Indices: 75357824--75358061 Score: 431
Period size: 94 Copynumber: 2.5 Consensus size: 94
75357814 GGATTTTATG
**
75357824 TGATGAACGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
1 TGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
*
75357889 ATATGTGTGATAAGTCCGAATGGCCAATA
66 ATATGTGTGATAAGGCCGAATGGCCAATA
*
75357918 TGATGAATATGAACATGCATATATGTGAGAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
1 TGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
75357983 ATATGTGTGATAAGGCCGAATGGCCAATA
66 ATATGTGTGATAAGGCCGAATGGCCAATA
*
75358012 TGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCTAATGTGA
1 TGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
75358062 AATATGTATG
Statistics
Matches: 138, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 138 1.00
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.26
Consensus pattern (94 bp):
TGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGC
ATATGTGTGATAAGGCCGAATGGCCAATA
Found at i:75358100 original size:48 final size:48
Alignment explanation
Indices: 75358031--75358165 Score: 207
Period size: 48 Copynumber: 2.8 Consensus size: 48
75358021 TGAACATGCA
* * *
75358031 TATATGTGATAAGGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
* * *
75358079 TATATGTGGTAAAGTCGAATGGCTAGTGCGAAATATGTATGAGGTATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
*
75358127 TATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
75358166 GGCGATGTGC
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 78 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
Found at i:75358420 original size:37 final size:37
Alignment explanation
Indices: 75358312--75358420 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
75358302 GGAAATATAT
*
75358312 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
75358349 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
75358386 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
75358421 CATCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:75359745 original size:40 final size:40
Alignment explanation
Indices: 75359689--75360013 Score: 544
Period size: 40 Copynumber: 8.1 Consensus size: 40
75359679 GAGAATTGAG
* *
75359689 AGTGATATATCTGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
75359729 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
75359769 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
75359809 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
75359849 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
75359889 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* ** *
75359929 AGTGATATATCCGTG-CTAAACCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCG-GACTAAGTCCCGAAGAGCATTCGTGCT
*
75359969 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
75360009 AGTGA
1 AGTGA
75360014 CATGTATTCG
Statistics
Matches: 268, Mismatches: 15, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
39 1 0.00
40 266 0.99
41 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:75360217 original size:25 final size:25
Alignment explanation
Indices: 75360177--75360227 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
75360167 GTGTAATAAC
75360177 GAATGAATAAGAGCACTATGTGTGT
1 GAATGAATAAGAGCACTATGTGTGT
*
75360202 GAATGAAT-AGAGGCACTGTGTGTGT
1 GAATGAATAAGA-GCACTATGTGTGT
75360227 G
1 G
75360228 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 3 0.12
25 21 0.88
ACGTcount: A:0.31, C:0.08, G:0.33, T:0.27
Consensus pattern (25 bp):
GAATGAATAAGAGCACTATGTGTGT
Found at i:75363255 original size:13 final size:13
Alignment explanation
Indices: 75363237--75363261 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75363227 TAATGGTATA
75363237 TTGAATCCATGAT
1 TTGAATCCATGAT
75363250 TTGAATCCATGA
1 TTGAATCCATGA
75363262 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:75365049 original size:47 final size:47
Alignment explanation
Indices: 75364864--75365939 Score: 1702
Period size: 47 Copynumber: 22.6 Consensus size: 47
75364854 TTATTCATTG
* *
75364864 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
75364911 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
75364960 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
75365009 GAATATGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
75365056 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
75365103 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
75365150 GAATGTGAAAGTGTATATATATGTGATAATGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
75365199 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
75365246 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
75365293 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCCATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
75365342 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
75365391 GAATATGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
75365438 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
75365485 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
75365532 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
75365581 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
75365628 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
75365675 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
75365724 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
75365771 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
75365818 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * * *
75365865 GAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
75365912 GGATGTGAAAGTGTATAAATGTGATAAG
1 GAATGTGAAAGTGTATATATGTGATAAG
75365940 TCCTGAAGGG
Statistics
Matches: 970, Mismatches: 49, Indels: 20
0.93 0.05 0.02
Matches are distributed among these distances:
47 653 0.67
49 317 0.33
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:75365178 original size:143 final size:141
Alignment explanation
Indices: 75364864--75365939 Score: 1729
Period size: 143 Copynumber: 7.5 Consensus size: 141
75364854 TTATTCATTG
* *
75364864 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTG--TAT
*
75364929 ATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
75364994 AATGGCCGATGTGAT
127 AATGGCCGATGTGAT
* *
75365009 GAATATGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATAT
* *
75365074 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
75365139 GCCAATGTGAT
131 GCCGATGTGAT
* *
75365150 GAATGTGAAAGTGTATATATATGTGATAATGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTAT
* *
75365215 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
75365280 TGGCCAATGTGAT
129 TGGCCGATGTGAT
* *
75365293 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTGTAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTG--T
*
75365358 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCT
62 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
75365423 AATAGCCGATGTGAT
127 AATGGCCGATGTGAT
*
75365438 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATAT
* *
75365503 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
*
75365568 TAGCCGATGTGAT
129 TGGCCGATGTGAT
75365581 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATAT
* *
75365646 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
75365711 TGGCCGATGTGAT
129 TGGCCGATGTGAT
75365724 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATAT
*
75365789 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
75365854 ACCGATGTGAT
131 GCCGATGTGAT
* * * * * * * *
75365865 GAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATAT
75365930 ATGTGATAAG
66 ATGTGATAAG
75365940 TCCTGAAGGG
Statistics
Matches: 888, Mismatches: 37, Indels: 16
0.94 0.04 0.02
Matches are distributed among these distances:
141 188 0.21
143 555 0.62
145 145 0.16
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (141 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGAT
Found at i:75365194 original size:190 final size:191
Alignment explanation
Indices: 75364864--75365939 Score: 1842
Period size: 190 Copynumber: 5.7 Consensus size: 191
75364854 TTATTCATTG
75364864 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATAT
*
75364929 ATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
65 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
* *
75364994 AATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
130 AATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
* * *
75365056 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATA
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATA
*
75365120 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAATGCCTA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
75365185 ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
131 ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
75365246 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATAT
* *
75365311 ATATGTGATAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
65 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
* *
75365376 AATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
130 AATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
* * *
75365438 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATA
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATA
75365502 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
*
75365567 ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGAT
131 ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
75365628 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATAT
* *
75365693 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
65 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
*
75365756 AATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
130 AATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
* * *
75365818 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTG-TATA
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATA
* * * * *
75365882 TATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
75365940 TCCTGAAGGG
Statistics
Matches: 838, Mismatches: 40, Indels: 16
0.94 0.04 0.02
Matches are distributed among these distances:
188 50 0.06
189 1 0.00
190 503 0.60
192 284 0.34
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (191 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATA
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
Found at i:75368791 original size:47 final size:47
Alignment explanation
Indices: 75368740--75369027 Score: 459
Period size: 47 Copynumber: 6.1 Consensus size: 47
75368730 TTAGGATTTT
*
75368740 ATGTGATGAATGTGAACATGCATATATGTGATATGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75368787 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75368834 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
75368881 ATATGATGAATATGAACATGCATATATGTGAGAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75368928 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
75368975 ATATGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
75369022 ATGTGA
1 ATGTGA
75369028 AATATGTATG
Statistics
Matches: 222, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 222 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:75369066 original size:48 final size:48
Alignment explanation
Indices: 75368997--75369131 Score: 225
Period size: 48 Copynumber: 2.8 Consensus size: 48
75368987 TGAACATGCA
* * *
75368997 TATATGTGATAAGGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
* *
75369045 TATATGTGGTAAAGCCGAATGGCTAGTGCGAAATATGTATGAGGTATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
75369093 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
75369132 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 81 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
Found at i:75369328 original size:37 final size:37
Alignment explanation
Indices: 75369278--75369390 Score: 199
Period size: 37 Copynumber: 3.1 Consensus size: 37
75369268 GGAAATATAT
*
75369278 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
75369315 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
75369352 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
75369389 TC
1 TC
75369391 TGAGCTAAAG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:75370313 original size:29 final size:29
Alignment explanation
Indices: 75370281--75370525 Score: 138
Period size: 29 Copynumber: 8.4 Consensus size: 29
75370271 ACTGTCCATG
* * *
75370281 TTCATATTCGATGGTTGAAACCATCTCTT
1 TTCATATTCGATAGTCGAAACCATCCCTT
* **
75370310 TTCATTAATCGATAGTCGTCACCATCCCTT
1 TTCA-TATTCGATAGTCGAAACCATCCCTT
* * * ** *
75370340 TTCAT-TGTTGATGGTTGTCACCATCACTT
1 TTCATAT-TCGATAGTCGAAACCATCCCTT
* * * * *
75370369 TTCATAATCAATAG-CCAAAGCTATCTCTT
1 TTCATATTCGATAGTCGAAA-CCATCCCTT
* *
75370398 TTCATA-TCTGATAGAT-GAAGCTATCCCTT
1 TTCATATTC-GATAG-TCGAAACCATCCCTT
* * * **
75370427 CTCATATTCGATGGGCGTCACCATCCCTT
1 TTCATATTCGATAGTCGAAACCATCCCTT
* * * * *
75370456 TTCATAATCGAAAGCCGAAGCTATCCCTT
1 TTCATATTCGATAGTCGAAACCATCCCTT
**
75370485 TTCATATTCGATAGTCGTCACCATCCCTT
1 TTCATATTCGATAGTCGAAACCATCCCTT
75370514 TTCATATTCGAT
1 TTCATATTCGAT
75370526 GATCACCAAT
Statistics
Matches: 159, Mismatches: 48, Indels: 18
0.71 0.21 0.08
Matches are distributed among these distances:
28 3 0.02
29 129 0.81
30 27 0.17
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (29 bp):
TTCATATTCGATAGTCGAAACCATCCCTT
Found at i:75370457 original size:58 final size:57
Alignment explanation
Indices: 75370395--75370520 Score: 180
Period size: 58 Copynumber: 2.2 Consensus size: 57
75370385 AAAGCTATCT
* * *
75370395 CTTTTCATATCTGATAGATGAAGCTATCCCTTCTCATATTCGATGGGCGTCACCATCC
1 CTTTTCATATC-GAAAGACGAAGCTATCCCTTCTCATATTCGATAGGCGTCACCATCC
* * *
75370453 CTTTTCATAATCGAAAGCCGAAGCTATCCCTTTTCATATTCGATAGTCGTCACCATCC
1 CTTTTCAT-ATCGAAAGACGAAGCTATCCCTTCTCATATTCGATAGGCGTCACCATCC
75370511 CTTTTCATAT
1 CTTTTCATAT
75370521 TCGATGATCA
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 56 0.92
59 3 0.05
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.36
Consensus pattern (57 bp):
CTTTTCATATCGAAAGACGAAGCTATCCCTTCTCATATTCGATAGGCGTCACCATCC
Found at i:75370511 original size:87 final size:86
Alignment explanation
Indices: 75370307--75370526 Score: 259
Period size: 87 Copynumber: 2.5 Consensus size: 86
75370297 GAAACCATCT
* **
75370307 CTTTTCATTAATCGATAGTCGTCACCATCCCTTTTCAT-TGTTGATGGTTGTCACCATCACTTTT
1 CTTTTCA-T-ATCGATAGTCGTCACCATCCCTTTTCATAT-TCGATGGGCGTCACCATCACTTTT
*
75370371 CATAATCAATAGCCAAAGCTATCT
63 CATAATCAATAGCCAAAGCTATCC
* * * *
75370395 CTTTTCATATCTGATAGAT-G-AAGCTATCCCTTCTCATATTCGATGGGCGTCACCATCCCTTTT
1 CTTTTCATATC-GATAG-TCGTCA-CCATCCCTTTTCATATTCGATGGGCGTCACCATCACTTTT
*
75370458 CATAATCGAA-AGCCGAAGCTATCC
63 CATAATC-AATAGCCAAAGCTATCC
75370482 CTTTTCATATTCGATAGTCGTCACCATCCCTTTTCATATTCGATG
1 CTTTTCATA-TCGATAGTCGTCACCATCCCTTTTCATATTCGATG
75370527 ATCACCAATA
Statistics
Matches: 112, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
86 5 0.04
87 93 0.83
88 14 0.12
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (86 bp):
CTTTTCATATCGATAGTCGTCACCATCCCTTTTCATATTCGATGGGCGTCACCATCACTTTTCAT
AATCAATAGCCAAAGCTATCC
Found at i:75373772 original size:42 final size:42
Alignment explanation
Indices: 75373667--75373823 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 42
75373657 ATATGTGTTA
** * *
75373667 TCGTGTAAGACCACGTCTGGGACATTGGCATCG-ACTTATGATT
1 TCGTGTAAGACCATATTTGGGACGTTGGCATCGTA-TT-TGATT
* *
75373710 TACGTGTAAGACCATGTTTGGGACGTTGGCATCGTATTTTATT
1 T-CGTGTAAGACCATATTTGGGACGTTGGCATCGTATTTGATT
*
75373753 TCGTGTAAGACCTTATTTGGGACAG-TGGCATCGATATTTGATT
1 TCGTGTAAGACCATATTTGGGAC-GTTGGCATCG-TATTTGATT
* * * * *
75373796 ACATGTAAGACCACATCTAGGACGTTGG
1 TCGTGTAAGACCATATTTGGGACGTTGG
75373824 TATTGTATGA
Statistics
Matches: 96, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
42 29 0.30
43 35 0.36
44 31 0.32
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.33
Consensus pattern (42 bp):
TCGTGTAAGACCATATTTGGGACGTTGGCATCGTATTTGATT
Found at i:75373805 original size:43 final size:43
Alignment explanation
Indices: 75373655--75373808 Score: 145
Period size: 42 Copynumber: 3.6 Consensus size: 43
75373645 ACATAGGATC
* ** * *
75373655 CGATATGTG-TTATCGTGTAAGACCACGTCTGGGACATTGGCAT
1 CGATATTTGATTA-CGTGTAAGACCATATTTGGGACAGTGGCAT
* *
75373698 CGACT-TATGATTTACGTGTAAGACCATGTTTGGGAC-GTTGGCAT
1 CGA-TATTTGA-TTACGTGTAAGACCATATTTGGGACAG-TGGCAT
* * *
75373742 CG-TATTTTATTTCGTGTAAGACCTTATTTGGGACAGTGGCAT
1 CGATATTTGATTACGTGTAAGACCATATTTGGGACAGTGGCAT
*
75373784 CGATATTTGATTACATGTAAGACCA
1 CGATATTTGATTACGTGTAAGACCA
75373809 CATCTAGGAC
Statistics
Matches: 91, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
42 31 0.34
43 28 0.31
44 29 0.32
45 3 0.03
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (43 bp):
CGATATTTGATTACGTGTAAGACCATATTTGGGACAGTGGCAT
Found at i:75378483 original size:47 final size:47
Alignment explanation
Indices: 75378431--75378985 Score: 822
Period size: 47 Copynumber: 11.6 Consensus size: 47
75378421 GATAATTGTG
* *
75378431 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75378478 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTAGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCT-A------A--T-GGCCGATGTGATGA
*
75378535 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75378582 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75378629 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75378676 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75378723 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75378770 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75378819 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75378866 ATGTGAAAGTGTATATATGTGATGAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
75378913 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75378960 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
75378986 TCCCGAAGGG
Statistics
Matches: 466, Mismatches: 30, Indels: 24
0.90 0.06 0.05
Matches are distributed among these distances:
47 371 0.80
48 2 0.00
49 45 0.10
50 1 0.00
54 1 0.00
56 2 0.00
57 44 0.09
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:75378859 original size:190 final size:190
Alignment explanation
Indices: 75378431--75378985 Score: 857
Period size: 190 Copynumber: 2.9 Consensus size: 190
75378421 GATAATTGTG
* *
75378431 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
75378496 GTGATAAGGCCTAATGGCCGATGTAGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66 GTGATAAGGCCTAAT-----A-GT----CGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* * *
75378561 GCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGT
121 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGT
75378624 GATGA
186 GATGA
75378629 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
75378694 GTGATAAGGCCTAATAGTCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
66 GTGATAAGGCCTAATAGTCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
* *
75378759 CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
75378819 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * *
75378884 GTGATGAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
66 GTGATAAGGCCTAATAGTCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
* *
75378949 CAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
131 CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
75378986 TCCCGAAGGG
Statistics
Matches: 340, Mismatches: 15, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
188 76 0.22
189 1 0.00
190 182 0.54
192 2 0.01
193 1 0.00
198 78 0.23
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (190 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATAGTCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:75386153 original size:36 final size:36
Alignment explanation
Indices: 75386106--75386177 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
75386096 ATGAATGATT
*
75386106 ATATGTGATGTATATCCGATTCAAGTACGTTCGAAA
1 ATATGTGATGTATATCCGATTCAAGTACGTCCGAAA
75386142 ATATGTGATGTATATCCGATTCAAGTACGTCCGAAA
1 ATATGTGATGTATATCCGATTCAAGTACGTCCGAAA
75386178 TGTATACTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.32
Consensus pattern (36 bp):
ATATGTGATGTATATCCGATTCAAGTACGTCCGAAA
Found at i:75386287 original size:20 final size:20
Alignment explanation
Indices: 75386262--75386301 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
75386252 CTTTATAGTG
75386262 TAAATGAATAGGAAATATGT
1 TAAATGAATAGGAAATATGT
* * *
75386282 TAAATGTATATGAACTATGT
1 TAAATGAATAGGAAATATGT
75386302 GGTTTGAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.03, G:0.17, T:0.35
Consensus pattern (20 bp):
TAAATGAATAGGAAATATGT
Found at i:75390019 original size:55 final size:55
Alignment explanation
Indices: 75389951--75390060 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
75389941 CAATGTTATA
*
75389951 AAGGACCTTGAAACAATCCATTATTACCAACAATTCACAATAAAACCCATAGATT
1 AAGGACCTAGAAACAATCCATTATTACCAACAATTCACAATAAAACCCATAGATT
75390006 AAGGACCTAGAAACAATCCATTATTACCAACAATTCACAATAAAACCCATAGATT
1 AAGGACCTAGAAACAATCCATTATTACCAACAATTCACAATAAAACCCATAGATT
75390061 TACACTTTTA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.46, C:0.24, G:0.07, T:0.23
Consensus pattern (55 bp):
AAGGACCTAGAAACAATCCATTATTACCAACAATTCACAATAAAACCCATAGATT
Found at i:75395168 original size:29 final size:28
Alignment explanation
Indices: 75395125--75395202 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
75395115 TCATGAGATT
75395125 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
75395155 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
75395182 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
75395203 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:75395477 original size:173 final size:174
Alignment explanation
Indices: 75395155--75395481 Score: 575
Period size: 173 Copynumber: 1.9 Consensus size: 174
75395145 AAATTGTACA
* *
75395155 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
75395220 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
75395285 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * *
75395329 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
75395394 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
75395458 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
75395482 ACCTTGAGTT
Statistics
Matches: 145, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
173 80 0.55
174 65 0.45
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:75399042 original size:25 final size:26
Alignment explanation
Indices: 75398988--75399042 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
75398978 TTTCATATTT
75398988 TATAATAAGGTTAAATATGTAATTAA
1 TATAATAAGGTTAAATATGTAATTAA
* *
75399014 -ATAAT-ATGTTAATATATGTTA-TAA
1 TATAATAAGGTTAA-ATATGTAATTAA
75399038 TATAA
1 TATAA
75399043 CATAAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (26 bp):
TATAATAAGGTTAAATATGTAATTAA
Found at i:75399282 original size:24 final size:25
Alignment explanation
Indices: 75399237--75399283 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
75399227 ATTTTTTATT
*
75399237 TTGATGAATATTTTGAGTTATGTCA
1 TTGATGAATATTTTGAGCTATGTCA
75399262 TTGATGAATA-TTTGAGCTATGT
1 TTGATGAATATTTTGAGCTATGT
75399284 GATGCTAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.28, C:0.04, G:0.21, T:0.47
Consensus pattern (25 bp):
TTGATGAATATTTTGAGCTATGTCA
Found at i:75399331 original size:15 final size:14
Alignment explanation
Indices: 75399311--75399340 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
75399301 TATGAAAGAT
75399311 ATGTTTTGGGTTAAC
1 ATGTTTTGGG-TAAC
75399326 ATGTTTTGGGTAAC
1 ATGTTTTGGGTAAC
75399340 A
1 A
75399341 CCCCTCACCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.23, C:0.07, G:0.27, T:0.43
Consensus pattern (14 bp):
ATGTTTTGGGTAAC
Found at i:75400014 original size:31 final size:31
Alignment explanation
Indices: 75399979--75400038 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
75399969 TATGAAAACC
75399979 TCATATCATTGGTTTCATGCATGATAGGTCA
1 TCATATCATTGGTTTCATGCATGATAGGTCA
75400010 TCATATCATTGGTTTCATGCATGATAGGT
1 TCATATCATTGGTTTCATGCATGATAGGT
75400039 TATTTCCCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (31 bp):
TCATATCATTGGTTTCATGCATGATAGGTCA
Found at i:75403719 original size:99 final size:99
Alignment explanation
Indices: 75403565--75403743 Score: 277
Period size: 99 Copynumber: 1.8 Consensus size: 99
75403555 ATCTGATACG
* * * * * *
75403565 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTCATCATCTAATACACGTAGTAGCCTGCAC
1 CATAGTAGCCTACACTTAGTACTACACATGCGACCTAACCATATAATACACGTAGTAGCCTACAC
75403630 TTAGTACTACACGTGATCGAAGTCATTGAGTACA
66 TTAGTACTACACGTGATCGAAGTCATTGAGTACA
* * *
75403664 CATAGTAGCCTACACTTAGTACTACACATGCGACTTAACCGTATGATACACGTAGTAGCCTACAC
1 CATAGTAGCCTACACTTAGTACTACACATGCGACCTAACCATATAATACACGTAGTAGCCTACAC
75403729 TTAGTACTACACGTG
66 TTAGTACTACACGTG
75403744 TATTTACAAT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
99 71 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (99 bp):
CATAGTAGCCTACACTTAGTACTACACATGCGACCTAACCATATAATACACGTAGTAGCCTACAC
TTAGTACTACACGTGATCGAAGTCATTGAGTACA
Found at i:75403725 original size:50 final size:49
Alignment explanation
Indices: 75403558--75403740 Score: 176
Period size: 50 Copynumber: 3.7 Consensus size: 49
75403548 CGAAGCTATC
* * * * * *
75403558 TGATACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTCATCATC
1 TGATACACATAGTAGCCTACACTTAGTACTACACATGTGA-CTTAACGTA
* * * *
75403608 TAATACACGTAGTAGCCTGCACTTAGTACTACAC--GTGA-TCGAA-GTCA
1 TGATACACATAGTAGCCTACACTTAGTACTACACATGTGACT-TAACGT-A
*
75403655 TTGAGTACACATAGTAGCCTACACTTAGTACTACACATGCGACTTAACCGTA
1 -TGA-TACACATAGTAGCCTACACTTAGTACTACACATGTGACTTAA-CGTA
*
75403707 TGATACACGTAGTAGCCTACACTTAGTACTACAC
1 TGATACACATAGTAGCCTACACTTAGTACTACAC
75403741 GTGTATTTAC
Statistics
Matches: 111, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
46 2 0.02
47 1 0.01
48 6 0.05
49 29 0.26
50 61 0.55
51 8 0.07
52 2 0.02
53 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (49 bp):
TGATACACATAGTAGCCTACACTTAGTACTACACATGTGACTTAACGTA
Found at i:75411406 original size:23 final size:23
Alignment explanation
Indices: 75411380--75411428 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
75411370 CTCCATAATC
75411380 CATCAAAATAAAAGCAACTCATG
1 CATCAAAATAAAAGCAACTCATG
75411403 CATCAAAATAAAAGCAACTCATG
1 CATCAAAATAAAAGCAACTCATG
75411426 CAT
1 CAT
75411429 GGGTAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.51, C:0.22, G:0.08, T:0.18
Consensus pattern (23 bp):
CATCAAAATAAAAGCAACTCATG
Found at i:75412655 original size:45 final size:43
Alignment explanation
Indices: 75412575--75412793 Score: 146
Period size: 43 Copynumber: 5.1 Consensus size: 43
75412565 ATAGGATTCC
* * * * *
75412575 GATATGTGTTTTCGTGGAAGAACACATCTGGGACGTTGGCATT
1 GATATGTGTTTTCATGTAAGACCACGTCTGAGACGTTGGCATT
75412618 GATATATGTGTTTTCATGTAAGACCACGTCTGAGACGTTGGCATT
1 G--ATATGTGTTTTCATGTAAGACCACGTCTGAGACGTTGGCATT
* * * * * * *
75412663 GATATGTGGTTACAAGTAAGACCATGTCTGAGACATCGGCATC
1 GATATGTGTTTTCATGTAAGACCACGTCTGAGACGTTGGCATT
* * * *
75412706 G-TATTTGATTTGC--GTAAGACC-CTATCTGGGACAG-TGGCATT
1 GATATGTG-TTTTCATGTAAGACCAC-GTCTGAGAC-GTTGGCATT
* * ** * *
75412747 GATATGAGATAGCATG-AAGACCACGTCTGGGACATTGGCATT
1 GATATGTGTTTTCATGTAAGACCACGTCTGAGACGTTGGCATT
75412789 G-TATG
1 GATATG
75412794 GTATATGTGA
Statistics
Matches: 139, Mismatches: 27, Indels: 22
0.74 0.14 0.12
Matches are distributed among these distances:
41 28 0.20
42 31 0.22
43 42 0.30
45 38 0.27
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
GATATGTGTTTTCATGTAAGACCACGTCTGAGACGTTGGCATT
Found at i:75416552 original size:50 final size:50
Alignment explanation
Indices: 75416431--75416672 Score: 265
Period size: 50 Copynumber: 4.8 Consensus size: 50
75416421 AGCCGAAGCT
* * * *
75416431 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * * *
75416480 ATCCGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGACCTCACC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * *
75416530 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CC
* * * *
75416581 AT-TGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAA-C
1 ATCTGA-TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* *
75416630 AGTATGGTACACATAGTAGCCTGCACTTAGTACTACACACGTG
1 A-TCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTG
75416673 TACTCACAAT
Statistics
Matches: 161, Mismatches: 27, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
49 40 0.25
50 81 0.50
51 40 0.25
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (50 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:75435252 original size:50 final size:50
Alignment explanation
Indices: 75435140--75435430 Score: 280
Period size: 50 Copynumber: 5.8 Consensus size: 50
75435130 CGAAGCTATA
* * ** **
75435140 TGGTACACATAGTAGACTGCGCTTAGTACTACACATGCAACC-AATAATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATC
*
75435189 TGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATC
* * * * ***
75435239 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CCATC
* * *
75435290 GGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATC
* * ** * *
75435340 TGGTACACGTAGTAGCCTGCACTTAGTACTATACACATAACGTAAAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACCATC
*** * *
75435392 TTAAAAACATAGTAGCCTGCACATAGTACTACACATGTG
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTG
75435431 TTCTCACAAT
Statistics
Matches: 196, Mismatches: 40, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
49 38 0.19
50 83 0.42
51 39 0.20
52 36 0.18
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (50 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATC
Found at i:75435420 original size:153 final size:150
Alignment explanation
Indices: 75435141--75435426 Score: 394
Period size: 151 Copynumber: 1.9 Consensus size: 150
75435131 GAAGCTATAT
*
75435141 GGTACACATAGTAGACTGCGCTTAGTACTACACATGCAACCAATAATCTGGTACACGTAGTAGCC
1 GGTACACATAGTAGACTGCACTTAGTACTACACATGCAACCAATAATCTGGTACACGTAGTAGCC
** * * * * *
75435206 TGCACTTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
66 TGCACTTAGTACTACACACATAACCTAACCATCTGAAAAACATAGTAGCCTGCACATAGTACTAC
75435271 ACACGTGATTGAAGTTGTCG
131 ACACGTGATTGAAGTTGTCG
* * **
75435291 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACT-ATCTGGTACACGTAGTAG
1 GGTACACATAGTAGACTGCACTTAGTACTACACATGCAACC-AA-TAATCTGGTACACGTAGTAG
* * *
75435355 CCTGCACTTAGTACTATACACATAACGTAAAACCATCTTAAAAACATAGTAGCCTGCACATAGTA
64 CCTGCACTTAGTACTACACACATAACCT--AACCATCTGAAAAACATAGTAGCCTGCACATAGTA
75435420 CTACACA
127 CTACACA
75435427 TGTGTTCTCA
Statistics
Matches: 117, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
150 36 0.31
151 43 0.37
152 1 0.01
153 37 0.32
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (150 bp):
GGTACACATAGTAGACTGCACTTAGTACTACACATGCAACCAATAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACATAACCTAACCATCTGAAAAACATAGTAGCCTGCACATAGTACTAC
ACACGTGATTGAAGTTGTCG
Found at i:75439141 original size:42 final size:44
Alignment explanation
Indices: 75438953--75439247 Score: 185
Period size: 48 Copynumber: 6.8 Consensus size: 44
75438943 TATGTGTTAT
* * *
75438953 CATGTAAGACTATATCTAGGATATGGCATT-G-ATATGAGATCC
1 CATGTAAGACCATATCTGGGACATGGCATTGGCATATGAGATCC
*
75438995 CA--TAAGACCATGTCTGGGACATGGCATTGACATCGACATATGAGATCC
1 CATGTAAGACCATATCTGGGACATGGCATTG-----G-CATATGAGATCC
* * *
75439043 CATGTAAGACAATGTCTGGGACATGGCATTGGCATCGAATGGTGATCC
1 CATGTAAGACCATATCTGGGACATGGCATTGGCAT---AT-GAGATCC
* * *
75439091 CATTTAAGACCATATCTGGGATATGGCATT-G-ATATGAGATAC
1 CATGTAAGACCATATCTGGGACATGGCATTGGCATATGAGATCC
*
75439133 CATGTAAG-----A-C-----CA-GGCATTGACATATGAGATCC
1 CATGTAAGACCATATCTGGGACATGGCATTGGCATATGAGATCC
* * *
75439165 CATGTAAGACCATGTCTTGGACATGGCATTGGCATCGAGTGGTGATCC
1 CATGTAAGACCATATCTGGGACATGGCATTGGCAT--A-T-GAGATCC
* * *
75439213 CTTGTAAGACCATATCTGTGATATGGCATTGGCAT
1 CATGTAAGACCATATCTGGGACATGGCATTGGCAT
75439248 CTTATTATGT
Statistics
Matches: 197, Mismatches: 24, Indels: 58
0.71 0.09 0.21
Matches are distributed among these distances:
30 6 0.03
31 1 0.01
32 18 0.09
36 1 0.01
37 1 0.01
38 1 0.01
40 22 0.11
42 14 0.07
43 4 0.02
44 13 0.07
45 1 0.01
46 4 0.02
47 4 0.02
48 81 0.41
50 26 0.13
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
CATGTAAGACCATATCTGGGACATGGCATTGGCATATGAGATCC
Found at i:75439149 original size:30 final size:31
Alignment explanation
Indices: 75439115--75439176 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 31
75439105 TCTGGGATAT
75439115 GGCATTG-ATATGAGATACCATGTAAGACCA
1 GGCATTGAATATGAGATACCATGTAAGACCA
*
75439145 GGCATTGACATATGAGATCCCATGTAAGACCA
1 GGCATTGA-ATATGAGATACCATGTAAGACCA
75439177 TGTCTTGGAC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 7 0.24
32 22 0.76
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (31 bp):
GGCATTGAATATGAGATACCATGTAAGACCA
Found at i:75442241 original size:46 final size:45
Alignment explanation
Indices: 75442087--75442301 Score: 159
Period size: 46 Copynumber: 4.7 Consensus size: 45
75442077 TGTGTGAGCT
* * *
75442087 AGTGTAAGACATGTCT-GGACATGCATCGACCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGTAT-A-AGCC
* * * **
75442132 AGTGTAAGACCATGTCTGGGACATGGCAGCGGCATTGAG-ACGAGCGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGTATAAGC-C
* *
75442179 TAGTGTAAGTCATGTCTGGGACATGCATCGGCCTCGAGTCATAAACC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGT-ATAAGCC
* * ** ** *
75442226 AGTGTAAGACATGTCTAGGACATGCATCGACAACGAG-ATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGTATAAGCC
*
75442270 AGTGTAAGACCATCTCTGGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
75442302 TACAGATATA
Statistics
Matches: 133, Mismatches: 27, Indels: 19
0.74 0.15 0.11
Matches are distributed among these distances:
44 12 0.09
45 21 0.16
46 59 0.44
47 22 0.17
48 18 0.14
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGTATAAGCC
Found at i:75443109 original size:30 final size:30
Alignment explanation
Indices: 75443075--75443132 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
75443065 ACACATGGGG
* * *
75443075 GTGTGTCCAGATCGTGTGTTACACACGAGC
1 GTGTGTCCAGACCGCGTGTGACACACGAGC
*
75443105 GTGTGTCTAGACCGCGTGTGACACACGA
1 GTGTGTCCAGACCGCGTGTGACACACGA
75443133 CTTGCCCTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (30 bp):
GTGTGTCCAGACCGCGTGTGACACACGAGC
Found at i:75445982 original size:15 final size:15
Alignment explanation
Indices: 75445962--75446026 Score: 66
Period size: 15 Copynumber: 4.4 Consensus size: 15
75445952 GTATCTTGGG
75445962 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
75445977 TTTCTTTATTCTAGG-
1 TTTCTTTATTCT-GGA
75445992 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
75446007 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
75446021 TTTCTT
1 TTTCTT
75446027 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 13
0.75 0.02 0.23
Matches are distributed among these distances:
14 14 0.33
15 23 0.53
16 6 0.14
ACGTcount: A:0.11, C:0.14, G:0.12, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:75447297 original size:49 final size:50
Alignment explanation
Indices: 75447223--75447418 Score: 216
Period size: 50 Copynumber: 3.9 Consensus size: 50
75447213 TAGCCGAAGC
75447223 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCACAA
* * * * *
75447271 TAGTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAAGTGACCTCAC
1 TA-TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCACAA
* ** * * * * *
75447322 CATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAG
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCACAA
* * *
75447372 TTTTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC
75447419 TCACAATAGA
Statistics
Matches: 123, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
48 2 0.02
49 39 0.32
50 45 0.37
51 37 0.30
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (50 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCACAA
Found at i:75447411 original size:101 final size:99
Alignment explanation
Indices: 75447230--75447422 Score: 262
Period size: 101 Copynumber: 1.9 Consensus size: 99
75447220 AGCTATCTGG
* *
75447230 TACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAGTCTGGTACACGTAGTAGCCTG
1 TACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATAGTCTGGTACACATAGTAGCCTG
*
75447295 CACTTAGTACTACACAAGTGACCTCACCATCTAA
66 CACTTAGTACTACACAAGCGACCTCACCATCTAA
* * * * * *
75447329 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT-TTTTGGGTACGCATAGTAGC
1 TACACATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAATAGTCT-GGTACACATAGTAGC
*
75447393 CTGCACTTAGTACTACACATGCGACCTCAC
63 CTGCACTTAGTACTACACAAGCGACCTCAC
75447423 AATAGATCGT
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
99 34 0.42
100 3 0.04
101 44 0.54
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
TACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATAGTCTGGTACACATAGTAGCCTG
CACTTAGTACTACACAAGCGACCTCACCATCTAA
Found at i:75449266 original size:50 final size:49
Alignment explanation
Indices: 75449147--75449328 Score: 179
Period size: 50 Copynumber: 3.7 Consensus size: 49
75449137 AGCTATCTAG
* * * * **
75449147 TACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGG
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTATAA
* * *
75449196 TACACGTAGTAGACTACACTTAGTACTACACACGTGACCTTACCA-TATAA
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC--AACAGTATAA
* * *
75449246 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCAGG
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG-TAT-A-A
* *
75449297 TACGCATAGTAGCCTGCACTTAGTACTACACA
1 TACACGTAGTAGCCTGCACTTAGTACTACACA
75449329 TGCGACCTCA
Statistics
Matches: 110, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
47 2 0.02
49 36 0.33
50 39 0.35
51 33 0.30
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (49 bp):
TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTATAA
Found at i:75449336 original size:101 final size:99
Alignment explanation
Indices: 75449147--75449336 Score: 247
Period size: 101 Copynumber: 1.9 Consensus size: 99
75449137 AGCTATCTAG
* * *
75449147 TACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGACTA
1 TACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCAGGTACACATAGTAGACTA
*
75449212 CACTTAGTACTACACACGTGACCTTACCATATAA
66 CACTTAGTACTACACACGCGACCTTACCATATAA
* * * * *
75449246 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCAGGTACGCATAGTAGC
1 TACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCAGGTACACATAGTAGA
* *
75449310 CTGCACTTAGTACTACACATGCGACCT
63 CTACACTTAGTACTACACACGCGACCT
75449337 CACAATAGAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
98 4 0.05
99 35 0.45
101 38 0.49
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (99 bp):
TACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCAGGTACACATAGTAGACTA
CACTTAGTACTACACACGCGACCTTACCATATAA
Found at i:75451381 original size:13 final size:13
Alignment explanation
Indices: 75451344--75451386 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
75451334 ATTATTCATT
*
75451344 TTTTAACATATTA
1 TTTTAATATATTA
75451357 TTTTAATATATTA
1 TTTTAATATATTA
75451370 TTTTGAAT-TATTGA
1 TTTT-AATATATT-A
75451384 TTT
1 TTT
75451387 CACCTTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 20 0.74
14 7 0.26
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (13 bp):
TTTTAATATATTA
Found at i:75451457 original size:16 final size:16
Alignment explanation
Indices: 75451438--75451488 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 16
75451428 TTTGAATTGT
75451438 TTTATTATATAATTTA
1 TTTATTATATAATTTA
* *
75451454 TTTATTTTA-AAATTA
1 TTTATTATATAATTTA
* *
75451469 TCTCTTATATAATTCTA
1 TTTATTATATAATT-TA
75451486 TTT
1 TTT
75451489 TTTAAAGGTT
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
15 11 0.42
16 11 0.42
17 4 0.15
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTATTATATAATTTA
Found at i:75452093 original size:16 final size:15
Alignment explanation
Indices: 75452048--75452096 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
75452038 TTGAATTTTA
75452048 TATTTTATATATTATT
1 TATTTTATAT-TTATT
*
75452064 TATTCTTATTTTTATT
1 TATT-TTATATTTATT
75452080 TATTTTATAATTTATT
1 TATTTTAT-ATTTATT
75452096 T
1 T
75452097 CAAATTTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 4 0.14
16 20 0.69
17 5 0.17
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (15 bp):
TATTTTATATTTATT
Found at i:75452771 original size:125 final size:127
Alignment explanation
Indices: 75452544--75452771 Score: 309
Period size: 127 Copynumber: 1.8 Consensus size: 127
75452534 ACTTCTCAAA
* * * * *
75452544 ACAAGGTAATATTTCGTATTTGGTAATTTGAGAAATCGTGCCCTAATGTGCTGGGTTTCGATTTT
1 ACAAGGCAATATTTCGTATTTGATAATTCGAGAAATCGTACCCTAACGTGCTGGGTTTCGATTTT
* * *
75452609 CCGTTTGACCGAATAACTAAATATCCTTTCAAGATTTCGTCTATATTTTCTTAAATTAAAAC
66 CCGTTTGACCAAATAACCAAATATCCTTTCAAAATTTCGTCTATATTTTCTTAAATTAAAAC
* * * *
75452671 ACAAGGCAATATTTCGTGTTTAGAT-ATTCGAGGAATTGTACCCTAACGTG-TTGGTTTCGATTT
1 ACAAGGCAATATTTCGTATTT-GATAATTCGAGAAATCGTACCCTAACGTGCTGGGTTTCGATTT
*
75452734 TCCG-TTGACCAAATAACCAAATATCCTTTGAAAATTTC
65 TCCGTTTGACCAAATAACCAAATATCCTTTCAAAATTTC
75452772 AATGCATGAA
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
125 30 0.34
126 16 0.18
127 39 0.45
128 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (127 bp):
ACAAGGCAATATTTCGTATTTGATAATTCGAGAAATCGTACCCTAACGTGCTGGGTTTCGATTTT
CCGTTTGACCAAATAACCAAATATCCTTTCAAAATTTCGTCTATATTTTCTTAAATTAAAAC
Found at i:75455840 original size:26 final size:26
Alignment explanation
Indices: 75455811--75455865 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
75455801 TGATAAAAAT
75455811 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75455837 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75455863 TGA
1 TGA
75455866 AGGGCATTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:75457383 original size:26 final size:26
Alignment explanation
Indices: 75457353--75457405 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
75457343 TTTATAGTTT
75457353 TACCCCTAGGAGGTAAATT-ACCGAAA
1 TACCCCTAGG-GGTAAATTGACCGAAA
* *
75457379 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGGTAAATTGACCGAAA
75457405 T
1 T
75457406 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGGTAAATTGACCGAAA
Found at i:75462541 original size:26 final size:26
Alignment explanation
Indices: 75462512--75462567 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
75462502 TGATAAAAAT
*
75462512 TGATAATGGGTTATGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75462538 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75462564 TGAT
1 TGAT
75462568 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:75474541 original size:39 final size:40
Alignment explanation
Indices: 75474364--75474541 Score: 254
Period size: 40 Copynumber: 4.5 Consensus size: 40
75474354 CGAATGATAA
* * * * *
75474364 CCGGGCTAGGTCCCGAAGGCCTTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATA-T
75474404 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
*
75474444 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
75474484 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTATAT
*
75474524 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
75474542 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
39 17 0.13
40 110 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
Found at i:75476388 original size:44 final size:45
Alignment explanation
Indices: 75476320--75476606 Score: 142
Period size: 44 Copynumber: 6.4 Consensus size: 45
75476310 AGCCACCAGC
** * *
75476320 CTTAT-TTCCCTGAGGTAGTGAGGGAATAAG-CTGAAGATTGTAG-T
1 CTTATCTT-CCTGAGGTAGCAAGGG-AGAAGACTGAAGATTGAAGAT
*
75476364 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGAAGAT
1 CTTATCTTCCTGAGGTAGCAAGGGAGAAGACTGAAGATTGAAGAT
* * * * ** **
75476409 CTTATC-TCCTTGAGATAGC-AGTGGAGCAGA-TAAAAAACGGTGAAT
1 CTTATCTTCC-TGAGGTAGCAAG-GGAGAAGACTGAAGATTGAAG-AT
* * * * ** ***** *
75476454 CTTATCTTCCCGAGGTAGCAGGGGAGCAGATTTTAGCCACCA-AC
1 CTTATCTTCCTGAGGTAGCAAGGGAGAAGACTGAAGATTGAAGAT
* * ** * *
75476498 CTTATC-TCTCTGAGGTAGCAAGAGAGCAGGTTGAAGTTTGTAG-T
1 CTTATCTTC-CTGAGGTAGCAAGGGAGAAGACTGAAGATTGAAGAT
* *
75476542 CTTATCTTTCTGAGGTAGCAAGGGAGAAGACTGAATATTGAAGAT
1 CTTATCTTCCTGAGGTAGCAAGGGAGAAGACTGAAGATTGAAGAT
* *
75476587 CTTATCTCCCTGAGATAGCA
1 CTTATCTTCCTGAGGTAGCA
75476607 GTAGAGCAGA
Statistics
Matches: 182, Mismatches: 48, Indels: 25
0.71 0.19 0.10
Matches are distributed among these distances:
43 5 0.03
44 104 0.57
45 67 0.37
46 6 0.03
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (45 bp):
CTTATCTTCCTGAGGTAGCAAGGGAGAAGACTGAAGATTGAAGAT
Found at i:75476541 original size:178 final size:178
Alignment explanation
Indices: 75476229--75476909 Score: 979
Period size: 178 Copynumber: 3.8 Consensus size: 178
75476219 GAATTCACAA
* * * *
75476229 ATCTTATCTTCTTGAGATAGCAGTGGAGCAGATCGAAGACGGTGAATCTTATTTTCCCGAGGTAG
1 ATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGGTAG
* * * ** * ** * *
75476294 CAGGGGGGCAGATTTTAGCCACCAGCCTTATTTCCCTGAGGTAGTGAGGGAATAAGCTGAAGATT
66 CAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATT
*
75476359 GTAGTCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGAAG
131 GTAGTCTTATCTTCCTGAGGTAGCAAGGGAGAAGACTGAAGATTGAAG
* ** * *
75476407 ATCTTATCTCCTTGAGATAGCAGTGGAGCAGATAAAAAACGGTGAATCTTATCTTCCCGAGGTAG
1 ATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGGTAG
* *
75476472 CAGGGGAGCAGATTTTAGCCACCAACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGTTT
66 CAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATT
* *
75476537 GTAGTCTTATCTTTCTGAGGTAGCAAGGGAGAAGACTGAATATTGAAG
131 GTAGTCTTATCTTCCTGAGGTAGCAAGGGAGAAGACTGAAGATTGAAG
* * *
75476585 ATCTTATCTCCCTGAGATAGCAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCTCGGGGTAG
1 ATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGGTAG
* * * * *
75476650 CAGAGGAGTAGATTTTAACCACCAGCCTTA-CTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGTTT
66 CAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATT
* *
75476714 GTAGTCTTATCTTCCTGAGGTAGCAAGGAAGAAGACTGAAGATTGTAG
131 GTAGTCTTATCTTCCTGAGGTAGCAAGGGAGAAGACTGAAGATTGAAG
* * * * *
75476762 ATCTTATCTCCCTAAG-TAGTAGTGGAGCAGATCGAAGATGGCGAATCTCATCTTCCCAAGGTAG
1 ATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGGTAG
* *
75476826 CAAGGGAGTAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATT
66 CAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATT
75476891 GTAGTCTTATCTTCCTGAG
131 GTAGTCTTATCTTCCTGAG
75476910 ATATTAAGGA
Statistics
Matches: 452, Mismatches: 50, Indels: 3
0.90 0.10 0.01
Matches are distributed among these distances:
176 68 0.15
177 143 0.32
178 241 0.53
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (178 bp):
ATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGGTAG
CAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATT
GTAGTCTTATCTTCCTGAGGTAGCAAGGGAGAAGACTGAAGATTGAAG
Done.