Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 223 of 373
Found at i:75758878 original size:29 final size:29
Alignment explanation
Indices: 75758735--75758882 Score: 92
Period size: 28 Copynumber: 5.3 Consensus size: 29
75758725 CAACCTCTGT
* * *** *
75758735 TAAATAAAAGCCTTTGTGGATGTTTCTAT
1 TAAATGAAAGCCTTTGTGGCTAACTCTAC
*
75758764 TAAA-GGAAGCCTTTGTGGCT-A-TCT-C
1 TAAATGAAAGCCTTTGTGGCTAACTCTAC
* * * * * *
75758789 TAAATGGATGTCTTTGTGGCTATCTTTAT
1 TAAATGAAAGCCTTTGTGGCTAACTCTAC
* * *
75758818 TAAAGGAAA-CCTTTGTGG-TGATCTCTAT
1 TAAATGAAAGCCTTTGTGGCT-AACTCTAC
*
75758846 TAAATGAAAGCCTTTGTGGCTAACTCAAC
1 TAAATGAAAGCCTTTGTGGCTAACTCTAC
75758875 TAAATGAA
1 TAAATGAA
75758883 TGTTTTGTGG
Statistics
Matches: 93, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
25 4 0.04
26 17 0.18
27 1 0.01
28 38 0.41
29 32 0.34
30 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (29 bp):
TAAATGAAAGCCTTTGTGGCTAACTCTAC
Found at i:75758906 original size:28 final size:29
Alignment explanation
Indices: 75758815--75758906 Score: 71
Period size: 28 Copynumber: 3.2 Consensus size: 29
75758805 TGGCTATCTT
* ** **
75758815 TATTAAAGGAAA-CCTTTGTGGTGATCTC
1 TATTAAATGAAAGCCTTTGTGGCAAAATC
* *
75758843 TATTAAATGAAAGCCTTTGTGGCTAACTC
1 TATTAAATGAAAGCCTTTGTGGCAAAATC
* * * *
75758872 AACTAAATGAATG-TTTTGTGGCAAAATC
1 TATTAAATGAAAGCCTTTGTGGCAAAATC
75758900 TATTAAA
1 TATTAAA
75758907 AGGACGCCTT
Statistics
Matches: 51, Mismatches: 12, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
28 28 0.55
29 23 0.45
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (29 bp):
TATTAAATGAAAGCCTTTGTGGCAAAATC
Found at i:75759618 original size:14 final size:14
Alignment explanation
Indices: 75759583--75759620 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
75759573 TGTTTCACTG
*
75759583 AAAATGACTTTCGA
1 AAAATGATTTTCGA
75759597 AAAATGATTTTCGA
1 AAAATGATTTTCGA
75759611 AAAATGATTT
1 AAAATGATTT
75759621 ACTTTTCTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (14 bp):
AAAATGATTTTCGA
Found at i:75760103 original size:15 final size:15
Alignment explanation
Indices: 75760083--75760136 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
75760073 ATACTACAAA
75760083 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
75760098 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
75760115 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
75760132 ATATT
1 ATATT
75760137 AATATTAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 7 0.22
18 1 0.03
19 9 0.28
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:75760241 original size:22 final size:22
Alignment explanation
Indices: 75760213--75760255 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
75760203 AATATTAAAT
75760213 TATTTATTAAAATAATAATTTA
1 TATTTATTAAAATAATAATTTA
* *
75760235 TATTTATTATATTAATAATTT
1 TATTTATTAAAATAATAATTT
75760256 GTTATAAGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TATTTATTAAAATAATAATTTA
Found at i:75764318 original size:34 final size:34
Alignment explanation
Indices: 75764280--75764355 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 34
75764270 AAGCATGACT
* * *
75764280 TTTGCTAC-GAAGTTGATCTGTTATAAGCATATTG
1 TTTGCTACTGAA-TCGAACTGTTATAAACATATTG
* *
75764314 TTTGCCACTGAATCGAACTGTTATAAACTTATTG
1 TTTGCTACTGAATCGAACTGTTATAAACATATTG
*
75764348 GTTGCTAC
1 TTTGCTAC
75764356 CATATTGTTC
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
34 31 0.91
35 3 0.09
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.39
Consensus pattern (34 bp):
TTTGCTACTGAATCGAACTGTTATAAACATATTG
Found at i:75767705 original size:14 final size:15
Alignment explanation
Indices: 75767686--75767714 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
75767676 ATTGAATCAC
75767686 TAAAAA-TCTAAATA
1 TAAAAATTCTAAATA
75767700 TAAAAATTCTAAATA
1 TAAAAATTCTAAATA
75767715 AATCATCTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (15 bp):
TAAAAATTCTAAATA
Found at i:75771307 original size:12 final size:13
Alignment explanation
Indices: 75771281--75771324 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 13
75771271 ATGTTATTTT
75771281 ATAAGTTAAATAATA
1 ATAAG-TAAATAA-A
75771296 ATATAGTAAATAAA
1 ATA-AGTAAATAAA
75771310 ATAAGTAAAATAAA
1 ATAAGT-AAATAAA
75771324 A
1 A
75771325 AGTATCATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 3 0.11
14 12 0.44
15 10 0.37
16 2 0.07
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (13 bp):
ATAAGTAAATAAA
Found at i:75777713 original size:23 final size:22
Alignment explanation
Indices: 75777686--75777728 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
75777676 ATAGGTTACA
*
75777686 ACGTCATGACGAGGAGGTTTCCG
1 ACGTCATAACGAGGA-GTTTCCG
*
75777709 ACGTCATAATGAGGAGTTTC
1 ACGTCATAACGAGGAGTTTC
75777729 TAGATGTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (22 bp):
ACGTCATAACGAGGAGTTTCCG
Found at i:75777837 original size:24 final size:24
Alignment explanation
Indices: 75777803--75777862 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
75777793 GTTCCCACAT
*
75777803 AAATCTGTTATCTTTTCCCAGTTA
1 AAATCTATTATCTTTTCCCAGTTA
*
75777827 AAATCTATTATCTTTTCCTAGTTA
1 AAATCTATTATCTTTTCCCAGTTA
*
75777851 AACTCTAATTAT
1 AAATCT-ATTAT
75777863 TCTAGAGATA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
24 27 0.84
25 5 0.16
ACGTcount: A:0.30, C:0.18, G:0.05, T:0.47
Consensus pattern (24 bp):
AAATCTATTATCTTTTCCCAGTTA
Found at i:75779609 original size:18 final size:18
Alignment explanation
Indices: 75779588--75779623 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
75779578 AACATTTCAA
*
75779588 TTAAAATTTATGTAAAAT
1 TTAAAAATTATGTAAAAT
*
75779606 TTAAAAATTATTTAAAAT
1 TTAAAAATTATGTAAAAT
75779624 ATAATAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (18 bp):
TTAAAAATTATGTAAAAT
Found at i:75780572 original size:8 final size:8
Alignment explanation
Indices: 75780561--75780605 Score: 54
Period size: 8 Copynumber: 5.4 Consensus size: 8
75780551 GATCAACGCT
*
75780561 TTATTTTA
1 TTATTATA
75780569 TTATTATA
1 TTATTATA
75780577 TTATATTATA
1 -T-TATTATA
*
75780587 TTAATATA
1 TTATTATA
75780595 TTATTATA
1 TTATTATA
75780603 TTA
1 TTA
75780606 ATTTCTTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
8 23 0.72
9 2 0.06
10 7 0.22
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TTATTATA
Found at i:75780583 original size:13 final size:13
Alignment explanation
Indices: 75780562--75780605 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
75780552 ATCAACGCTT
*
75780562 TATTTTATTATTA
1 TATTATATTATTA
75780575 TATTATATTA-TA
1 TATTATATTATTA
*
75780587 TTAATATATTATTA
1 -TATTATATTATTA
75780601 TATTA
1 TATTA
75780606 ATTTCTTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 2 0.08
13 22 0.85
14 2 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TATTATATTATTA
Found at i:75780602 original size:16 final size:17
Alignment explanation
Indices: 75780560--75780607 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
75780550 CGATCAACGC
* *
75780560 TTTATTTTATTATTATA
1 TTTATTATATTAATATA
75780577 TTATATTATATTAATATA
1 TT-TATTATATTAATATA
75780595 -TTATTATATTAAT
1 TTTATTATATTAAT
75780608 TTCTTAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 12 0.43
17 3 0.11
18 13 0.46
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTATTATATTAATATA
Found at i:75786025 original size:21 final size:21
Alignment explanation
Indices: 75785981--75786034 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
75785971 AAACAGTATC
* *
75785981 ACACGCCCATGTGGTTTCAGG
1 ACACGCCCATGTGGTCTCACG
75786002 ACACGCCCATGT-GTCTCTACG
1 ACACGCCCATGTGGTCTC-ACG
*
75786023 ACACGCACATGT
1 ACACGCCCATGT
75786035 TGTCACCCCG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 4 0.14
21 25 0.86
ACGTcount: A:0.22, C:0.33, G:0.22, T:0.22
Consensus pattern (21 bp):
ACACGCCCATGTGGTCTCACG
Found at i:75787612 original size:20 final size:20
Alignment explanation
Indices: 75787584--75787622 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
75787574 TCTTTCTTTT
*
75787584 CTTTCTTTTATTATTATATG
1 CTTTATTTTATTATTATATG
75787604 CTTTATTTTATTATTATAT
1 CTTTATTTTATTATTATAT
75787623 TATATTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.08, G:0.03, T:0.67
Consensus pattern (20 bp):
CTTTATTTTATTATTATATG
Found at i:75787623 original size:8 final size:8
Alignment explanation
Indices: 75787606--75787650 Score: 54
Period size: 8 Copynumber: 5.4 Consensus size: 8
75787596 ATTATATGCT
*
75787606 TTATTTTA
1 TTATTATA
75787614 TTATTATA
1 TTATTATA
75787622 TTATATTATA
1 -T-TATTATA
*
75787632 TTAATATA
1 TTATTATA
75787640 TTATTATA
1 TTATTATA
75787648 TTA
1 TTA
75787651 ATTTCTTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
8 23 0.72
9 2 0.06
10 7 0.22
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TTATTATA
Found at i:75787625 original size:16 final size:16
Alignment explanation
Indices: 75787606--75787652 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 16
75787596 ATTATATGCT
*
75787606 TTATTTTATTATTATA
1 TTATTTTATTAATATA
75787622 TTATATTATATTAATATA
1 TTAT-TT-TATTAATATA
*
75787640 TTATTATATTAAT
1 TTATTTTATTAAT
75787653 TTCTTAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 11 0.41
17 3 0.11
18 13 0.48
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTATTTTATTAATATA
Found at i:75787628 original size:13 final size:13
Alignment explanation
Indices: 75787607--75787650 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
75787597 TTATATGCTT
*
75787607 TATTTTATTATTA
1 TATTATATTATTA
75787620 TATTATATTA-TA
1 TATTATATTATTA
*
75787632 TTAATATATTATTA
1 -TATTATATTATTA
75787646 TATTA
1 TATTA
75787651 ATTTCTTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 2 0.08
13 22 0.85
14 2 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TATTATATTATTA
Found at i:75790042 original size:32 final size:32
Alignment explanation
Indices: 75790003--75790065 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
75789993 TCAACACATA
75790003 TTTTTATAGCTTTTAATTTTATCATAAAATAT
1 TTTTTATAGCTTTTAATTTTATCATAAAATAT
75790035 TTTTTATAGCTTTTAATTTTATCATAAAATA
1 TTTTTATAGCTTTTAATTTTATCATAAAATA
75790066 ATCATTTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.56
Consensus pattern (32 bp):
TTTTTATAGCTTTTAATTTTATCATAAAATAT
Found at i:75791704 original size:29 final size:29
Alignment explanation
Indices: 75791653--75791723 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 29
75791643 TATAAAGGCT
* * *
75791653 TATTCTTGT-AAATTTTCAAAAAATGGTC
1 TATTTTTGTAAAATTTTAAAAAAATGATC
75791681 TATTTTTGTAAAATTTTAAAAAAATGATC
1 TATTTTTGTAAAATTTTAAAAAAATGATC
75791710 T-TTTTTG-AAAATTT
1 TATTTTTGTAAAATTT
75791724 AGTTTGAGCA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 7 0.18
28 14 0.36
29 18 0.46
ACGTcount: A:0.38, C:0.06, G:0.08, T:0.48
Consensus pattern (29 bp):
TATTTTTGTAAAATTTTAAAAAAATGATC
Found at i:75792269 original size:11 final size:12
Alignment explanation
Indices: 75792237--75792267 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
75792227 TGTTTTTCAT
75792237 AATTTTTTATAA
1 AATTTTTTATAA
75792249 AATTTTTTATAA
1 AATTTTTTATAA
75792261 AATTTTT
1 AATTTTT
75792268 ATTATTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
AATTTTTTATAA
Found at i:75794591 original size:40 final size:40
Alignment explanation
Indices: 75794536--75794616 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
75794526 TGGAAACGTT
75794536 AGTCCCGTAATGCGAAGAAACGATGAATACTCGTTTGAGA
1 AGTCCCGTAATGCGAAGAAACGATGAATACTCGTTTGAGA
75794576 AGTCCCGTAATGCGAAGAAACGATGAATACTCGTTTGAGA
1 AGTCCCGTAATGCGAAGAAACGATGAATACTCGTTTGAGA
75794616 A
1 A
75794617 AGCTAAGCGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (40 bp):
AGTCCCGTAATGCGAAGAAACGATGAATACTCGTTTGAGA
Found at i:75795547 original size:3 final size:3
Alignment explanation
Indices: 75795541--75795582 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
75795531 TTTTTTTTCT
*
75795541 TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
75795583 CTACTATTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:75796811 original size:5 final size:5
Alignment explanation
Indices: 75796754--75796798 Score: 74
Period size: 5 Copynumber: 9.0 Consensus size: 5
75796744 AAAAATAAAG
75796754 TAATA -AATAA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAAT-A TAATA TAATA TAATA TAATA TAATA TAATA TAATA
75796799 AAGAAAAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
4 3 0.08
5 32 0.84
6 3 0.08
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
TAATA
Found at i:75798263 original size:33 final size:32
Alignment explanation
Indices: 75798196--75798271 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 32
75798186 TTGTTTCCTT
*
75798196 TTGGAAATCAAAATTTTCCGTAGTATTTGCTG
1 TTGGAAATCAAAATTTTCCGTAGTATCTGCTG
* * * *
75798228 TTGGAAATTAACAGTTTTTCGTTGTATCTGCTG
1 TTGGAAATCAA-AATTTTCCGTAGTATCTGCTG
75798261 TTGGAAATCAA
1 TTGGAAATCAA
75798272 GTACGTTAGT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
32 10 0.27
33 27 0.73
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.41
Consensus pattern (32 bp):
TTGGAAATCAAAATTTTCCGTAGTATCTGCTG
Found at i:75799847 original size:41 final size:39
Alignment explanation
Indices: 75799782--75799860 Score: 122
Period size: 41 Copynumber: 2.0 Consensus size: 39
75799772 CCTACTTACC
* *
75799782 TGGAAAAAAAATAAAAAAATAGAATTAAAAGTTTTGATA
1 TGGAAAAAAAAAAAAAAAACAGAATTAAAAGTTTTGATA
75799821 TGGAAAAAAATAAAATAAAAACAGAATTAAAAGTTTTGAT
1 TGGAAAAAAA-AAAA-AAAAACAGAATTAAAAGTTTTGAT
75799861 TGAAATTCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 10 0.28
40 3 0.08
41 23 0.64
ACGTcount: A:0.61, C:0.01, G:0.13, T:0.25
Consensus pattern (39 bp):
TGGAAAAAAAAAAAAAAAACAGAATTAAAAGTTTTGATA
Found at i:75801885 original size:13 final size:13
Alignment explanation
Indices: 75801853--75801896 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
75801843 ACACCCTAGA
*
75801853 TCAAAATCTATAACC
1 TCAAACTCTA-AA-C
75801868 TCAAACTCTAAAC
1 TCAAACTCTAAAC
*
75801881 TCAAACCCTAAAC
1 TCAAACTCTAAAC
75801894 TCA
1 TCA
75801897 TAATTTGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 16 0.59
14 2 0.07
15 9 0.33
ACGTcount: A:0.45, C:0.32, G:0.00, T:0.23
Consensus pattern (13 bp):
TCAAACTCTAAAC
Found at i:75803621 original size:11 final size:11
Alignment explanation
Indices: 75803606--75803644 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
75803596 GTTTTCTCCC
75803606 TATTTTACTAT
1 TATTTTACTAT
* *
75803617 CATTTCACTAT
1 TATTTTACTAT
*
75803628 TATGTTACTAT
1 TATTTTACTAT
75803639 TATTTT
1 TATTTT
75803645 TTTGTTATTG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.26, C:0.13, G:0.03, T:0.59
Consensus pattern (11 bp):
TATTTTACTAT
Found at i:75807522 original size:13 final size:13
Alignment explanation
Indices: 75807506--75807531 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75807496 TAATTTTTTA
75807506 AAAGAAAAAAATG
1 AAAGAAAAAAATG
75807519 AAAGAAAAAAATG
1 AAAGAAAAAAATG
75807532 TAGGAGGTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (13 bp):
AAAGAAAAAAATG
Found at i:75810348 original size:18 final size:18
Alignment explanation
Indices: 75810325--75810367 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
75810315 CCGGAAAATA
75810325 ATTTTTGAAAAATAATTT
1 ATTTTTGAAAAATAATTT
* * *
75810343 ATTTTTTTAGAAATGATTT
1 A-TTTTTGAAAAATAATTT
75810362 ATTTTT
1 ATTTTT
75810368 CTGGTGTTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (18 bp):
ATTTTTGAAAAATAATTT
Found at i:75810533 original size:18 final size:18
Alignment explanation
Indices: 75810510--75810575 Score: 60
Period size: 21 Copynumber: 3.3 Consensus size: 18
75810500 GATTTATTTA
75810510 TAAATAAATAAATCAAAT
1 TAAATAAATAAATCAAAT
*
75810528 TAAATATATAATAATACTCAATT
1 T-AA-ATA-AATAA-A-TCAAAT
*
75810551 ATAAATAAATAAATTAAAT
1 -TAAATAAATAAATCAAAT
75810570 TAAATA
1 TAAATA
75810576 TTTCAATCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 12
0.72 0.06 0.22
Matches are distributed among these distances:
18 7 0.18
19 6 0.15
20 4 0.10
21 10 0.26
22 4 0.10
23 7 0.18
24 1 0.03
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAATAAATAAATCAAAT
Found at i:75813992 original size:40 final size:40
Alignment explanation
Indices: 75813955--75814224 Score: 420
Period size: 40 Copynumber: 6.8 Consensus size: 40
75813945 GGATATAGCT
*
75813955 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGT-
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTC
* *
75813994 AGTTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 A-CTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTC
*
75814035 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
75814075 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
*
75814115 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
* *
75814155 ACTAGCACAAATGCCTTCGGGACTTAGCCTGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
*
75814195 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
75814225 CGTTATCATC
Statistics
Matches: 221, Mismatches: 7, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
39 1 0.00
40 217 0.98
41 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
Found at i:75822116 original size:40 final size:40
Alignment explanation
Indices: 75822065--75822333 Score: 382
Period size: 40 Copynumber: 6.8 Consensus size: 40
75822055 GGATATAGCT
*
75822065 ACTCGCTCAAATGCCTTCGGGACTTAGCCC-GAATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAAT-TAGTA
** *
75822105 GTTCGCACAAATGCCTTCGGGACTTAGCCC-GGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAAT-TAGTA
* *
75822145 ACTCGCACAAATACCTTCGGGACTTAGCCCAGAAATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTA
*
75822185 ACTCGCACAAATGCCTTC-GGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTA
* *
75822224 ACTCGGACAAATGCCTTCGGGACTTAGCCCAGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTA
* * *
75822264 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTA
*
75822304 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
75822334 CGTTATCATC
Statistics
Matches: 209, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 36 0.17
40 171 0.82
41 2 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTA
Found at i:75822248 original size:119 final size:120
Alignment explanation
Indices: 75822065--75822333 Score: 391
Period size: 119 Copynumber: 2.2 Consensus size: 120
75822055 GGATATAGCT
* **
75822065 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGAATATAGTAGTTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTT
* *
75822130 AGCCC-GGATATAGTAACTCGCACAAATACCTTCGGGACTTAGCCCAGAAATAGTA
66 AGCCCAGAAT-TAGTAACTAGCACAAATACCTTCGGGACTTAGCCCAGAAATAGTA
*
75822185 ACTCGCACAAATGCCTTC-GGACTTAGCCCGGAAT-TAGTAACTCGGACAAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGGACT
* * * * *
75822248 TAGCCCAGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
65 TAGCCCAGAATTAGTAACTAGCACAAATACCTTCGGGACTTAGCCCAGAAATAGTA
*
75822304 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
75822334 CGTTATCATC
Statistics
Matches: 134, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
119 99 0.74
120 35 0.26
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (120 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCAGAATTAGTAACTAGCACAAATACCTTCGGGACTTAGCCCAGAAATAGTA
Found at i:75825910 original size:18 final size:18
Alignment explanation
Indices: 75825889--75825982 Score: 57
Period size: 19 Copynumber: 4.9 Consensus size: 18
75825879 TTATATTTAT
75825889 ATTTAAAAATTATAAAAA
1 ATTTAAAAATTATAAAAA
* *
75825907 ATTTCATAAAACTATAGAAA
1 ATTT-A-AAAATTATAAAAA
* **
75825927 A-TCATAAAAGCATAAAAA
1 ATTTA-AAAATTATAAAAA
75825945 ATATTAAAAA-TATTAAAAA
1 AT-TTAAAAATTA-TAAAAA
*
75825964 ATAATAAAAATATATAAAA
1 AT-TTAAAAAT-TATAAAA
75825983 GTGAAATTAT
Statistics
Matches: 60, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
18 18 0.30
19 21 0.35
20 19 0.32
21 2 0.03
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (18 bp):
ATTTAAAAATTATAAAAA
Found at i:75825953 original size:8 final size:9
Alignment explanation
Indices: 75825941--75825982 Score: 57
Period size: 9 Copynumber: 4.4 Consensus size: 9
75825931 TAAAAGCATA
75825941 AAAAATATT
1 AAAAATATT
75825950 AAAAATATT
1 AAAAATATT
*
75825959 AAAAAATAAT
1 -AAAAATATT
75825969 AAAAATATAT
1 AAAAATAT-T
75825979 AAAA
1 AAAA
75825983 GTGAAATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
9 16 0.55
10 13 0.45
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (9 bp):
AAAAATATT
Found at i:75825961 original size:19 final size:20
Alignment explanation
Indices: 75825938--75825982 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
75825928 TCATAAAAGC
*
75825938 ATAAAAAATATTAAAAATAT
1 ATAAAAAATAATAAAAATAT
75825958 -TAAAAAATAATAAAAATAT
1 ATAAAAAATAATAAAAATAT
75825977 ATAAAA
1 ATAAAA
75825983 GTGAAATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (20 bp):
ATAAAAAATAATAAAAATAT
Found at i:75826055 original size:27 final size:27
Alignment explanation
Indices: 75826025--75826079 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
75826015 AGAAGGTATG
75826025 ATAGCATATAAGGAAACTTTGAGTTTT
1 ATAGCATATAAGGAAACTTTGAGTTTT
75826052 ATAGCATATAAGGAAACTTTGAGTTTT
1 ATAGCATATAAGGAAACTTTGAGTTTT
75826079 A
1 A
75826080 GGTTAGTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.36
Consensus pattern (27 bp):
ATAGCATATAAGGAAACTTTGAGTTTT
Found at i:75827143 original size:25 final size:25
Alignment explanation
Indices: 75827115--75827179 Score: 64
Period size: 25 Copynumber: 2.7 Consensus size: 25
75827105 CATTCTCTTT
75827115 AGCCATATAACAGGATGCTCATGTG
1 AGCCATATAACAGGATGCTCATGTG
* * *
75827140 AGCCATGA-AACAGGAAGCTTATTTG
1 AGCCAT-ATAACAGGATGCTCATGTG
*
75827165 -GGC-TATAACAGGATG
1 AGCCATATAACAGGATG
75827180 TAACATCCTT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
22 1 0.03
23 9 0.27
24 2 0.06
25 20 0.61
26 1 0.03
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (25 bp):
AGCCATATAACAGGATGCTCATGTG
Found at i:75830270 original size:23 final size:24
Alignment explanation
Indices: 75830208--75830294 Score: 70
Period size: 25 Copynumber: 3.6 Consensus size: 24
75830198 GAAGAGTTAT
*
75830208 TATCAGGAAGCTC-TGAATAGCCA
1 TATCAGGAAGCTCAAGAATAGCCA
* *
75830231 TATAACAGGAAGTTCAAGCA-AGCCA
1 TAT--CAGGAAGCTCAAGAATAGCCA
* *
75830256 TATCAGGAAGCTCAAAAACAGCCTA
1 TATCAGGAAGCTCAAGAATAGCC-A
* *
75830281 TATTAGGACGCTCA
1 TATCAGGAAGCTCA
75830295 TAAAGAGCCG
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
23 15 0.29
24 4 0.08
25 30 0.59
26 2 0.04
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.20
Consensus pattern (24 bp):
TATCAGGAAGCTCAAGAATAGCCA
Found at i:75832463 original size:41 final size:41
Alignment explanation
Indices: 75832386--75832463 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 41
75832376 TCTAATATTT
*
75832386 ATTCACCGGCAATAAGCCTGCTAGGCACGAAGCCCGATCAA
1 ATTCACCGGCAATAAGCCTGCTAGGCACGAAACCCGATCAA
* *
75832427 ATTCTCCGGCACAT-AGCTTGCTAGGCTA-GAAACCCGA
1 ATTCACCGGCA-ATAAGCCTGCTAGGC-ACGAAACCCGA
75832464 ATATCATTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
41 29 0.91
42 3 0.09
ACGTcount: A:0.29, C:0.31, G:0.22, T:0.18
Consensus pattern (41 bp):
ATTCACCGGCAATAAGCCTGCTAGGCACGAAACCCGATCAA
Found at i:75840761 original size:28 final size:28
Alignment explanation
Indices: 75840689--75840773 Score: 98
Period size: 28 Copynumber: 3.0 Consensus size: 28
75840679 AAACATGTTA
75840689 GAAAAGAATAGTCTTTGTGGCAAACTCT
1 GAAAAGAATAGTCTTTGTGGCAAACTCT
* * * *
75840717 AAAAAGATTAGTATTTGTGGCGAACTCT
1 GAAAAGAATAGTCTTTGTGGCAAACTCT
** * *
75840745 GAAAAGAATAACCTTTGTGGAAAATTCT
1 GAAAAGAATAGTCTTTGTGGCAAACTCT
75840773 G
1 G
75840774 CATAGATCGC
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (28 bp):
GAAAAGAATAGTCTTTGTGGCAAACTCT
Found at i:75843449 original size:22 final size:21
Alignment explanation
Indices: 75843406--75843449 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
75843396 CTAAGTTTAT
*
75843406 TTTGAATTTGAGTTACTGTTA
1 TTTGAATTTGAGTTACTATTA
75843427 TTTGAATTATGAGATT-CTATTA
1 TTTGAATT-TGAG-TTACTATTA
75843449 T
1 T
75843450 AGCATGATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 10 0.50
23 2 0.10
ACGTcount: A:0.27, C:0.05, G:0.16, T:0.52
Consensus pattern (21 bp):
TTTGAATTTGAGTTACTATTA
Found at i:75844623 original size:15 final size:15
Alignment explanation
Indices: 75844603--75844632 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
75844593 AACCAAAAAG
75844603 AATGAAATAGTTTCC
1 AATGAAATAGTTTCC
75844618 AATGAAATAGTTTCC
1 AATGAAATAGTTTCC
75844633 CTATCACATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (15 bp):
AATGAAATAGTTTCC
Found at i:75847933 original size:24 final size:24
Alignment explanation
Indices: 75847906--75847955 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
75847896 ATGTAACGGG
*
75847906 TAAGTTCACGACCCTCTAGGAATT
1 TAAGTCCACGACCCTCTAGGAATT
75847930 TAAGTCCACGACCCTCTAGGAATT
1 TAAGTCCACGACCCTCTAGGAATT
75847954 TA
1 TA
75847956 GACTACTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (24 bp):
TAAGTCCACGACCCTCTAGGAATT
Found at i:75850296 original size:46 final size:45
Alignment explanation
Indices: 75850211--75850329 Score: 118
Period size: 46 Copynumber: 2.6 Consensus size: 45
75850201 TCTCGTAGTT
* *
75850211 GATGCATGTCTC-AGACATGTCTTACACTAGCTTACGTCTCGAGGCC
1 GATGCATGTC-CGA-ACATGTCTTACACTAACCTACGTCTCGAGGCC
*
75850257 GATGCATGTCCCGAACATGTCTTACACTAACACTA-GTCTCGATGCC
1 GATGCATGT-CCGAACATGTCTTACACTAAC-CTACGTCTCGAGGCC
* *
75850303 TATGCCATGT-CGGACATCGTCTTACAC
1 GATG-CATGTCCGAACAT-GTCTTACAC
75850330 AAGCTCTCAT
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
45 6 0.10
46 48 0.76
47 9 0.14
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCGAACATGTCTTACACTAACCTACGTCTCGAGGCC
Found at i:75857301 original size:46 final size:45
Alignment explanation
Indices: 75857213--75857336 Score: 124
Period size: 46 Copynumber: 2.7 Consensus size: 45
75857203 TCATCTCGTA
* *
75857213 GCCGATGCATGTCCCAGACATGTCTTATACTAGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTTA-GTCTCGAG
* * *
75857259 GCCGATGCATGTCCCAAACGTGTTTTACACTAGCACTT-GTCTCGAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAG--CTTAGTCTCGAG
** *
75857305 GCATATGCCATGTCCCAGACATTGTCTTACAC
1 GCCGATG-CATGTCCCAAACA-TGTCTTACAC
75857337 AGGCTTTCAT
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
46 41 0.64
47 11 0.17
48 12 0.19
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGCTTAGTCTCGAG
Found at i:75863265 original size:19 final size:20
Alignment explanation
Indices: 75863243--75863283 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
75863233 GGATAAAGTT
*
75863243 AAATTAATTAA-CTAAATGC
1 AAATGAATTAACCTAAATGC
75863262 AAATGAATTAACCTAAATGC
1 AAATGAATTAACCTAAATGC
75863282 AA
1 AA
75863284 TAAAATGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.54, C:0.12, G:0.07, T:0.27
Consensus pattern (20 bp):
AAATGAATTAACCTAAATGC
Found at i:75864315 original size:22 final size:22
Alignment explanation
Indices: 75864289--75864333 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
75864279 ATTATGTATA
*
75864289 TTAATTCATGATATAA-TTAATT
1 TTAATTCAT-ATACAATTTAATT
75864311 TTAATTCATATACAATTTAATT
1 TTAATTCATATACAATTTAATT
75864333 T
1 T
75864334 GGATTATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.40, C:0.07, G:0.02, T:0.51
Consensus pattern (22 bp):
TTAATTCATATACAATTTAATT
Found at i:75875416 original size:14 final size:14
Alignment explanation
Indices: 75875397--75875424 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
75875387 CCTATTATAC
75875397 GACGTGTAGCTTGA
1 GACGTGTAGCTTGA
75875411 GACGTGTAGCTTGA
1 GACGTGTAGCTTGA
75875425 CAAATTAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.36, T:0.29
Consensus pattern (14 bp):
GACGTGTAGCTTGA
Found at i:75881791 original size:43 final size:42
Alignment explanation
Indices: 75881730--75881843 Score: 113
Period size: 43 Copynumber: 2.7 Consensus size: 42
75881720 GGTGTGATTT
* * * *
75881730 CATGTAAAACCATGTCTGGGACATTGGCATCGATATGAGATTA
1 CATGTAAGACCATATCTGGGACA-TGGCATCAATATGAGATAA
* * * * *
75881773 CGTGTAAGACCCTATCTGGGACAAAGACATCAATATGTGATAA
1 CATGTAAGACCATATCTGGGAC-ATGGCATCAATATGAGATAA
*
75881816 CATGTAAGACCATATC-GGGATATGGCAT
1 CATGTAAGACCATATCTGGGACATGGCAT
75881844 TGTATGCGAT
Statistics
Matches: 56, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
41 5 0.09
42 4 0.07
43 46 0.82
44 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (42 bp):
CATGTAAGACCATATCTGGGACATGGCATCAATATGAGATAA
Found at i:75886475 original size:40 final size:40
Alignment explanation
Indices: 75886415--75886598 Score: 223
Period size: 40 Copynumber: 4.6 Consensus size: 40
75886405 TATTCGAATG
75886415 ATATCCGGGCTAAG-TCCCGAAGG-ATTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCA-TTTATGCTAGTGACT
* * *
75886455 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
75886495 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
75886535 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
75886575 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
75886599 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 1 0.01
40 119 0.96
41 4 0.03
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:75886555 original size:80 final size:81
Alignment explanation
Indices: 75886415--75886598 Score: 250
Period size: 80 Copynumber: 2.3 Consensus size: 81
75886405 TATTCGAATG
* *
75886415 ATATCCGGGCTAAGTCCCGAAGG-ATTTTATGCTAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTTATGCTAGCGACTATATCCGGACTAAGATCCGAAGGC
* *
75886479 ATTTGTGCGAGTTG-CT
66 ATTTATGCGAG-TGACC
* * *
75886495 ATATTCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTTATGCTAGCGACTATATCCGGACTAAGAT-CCGAAGG
*
75886558 CATTTATGCTAGTGACC
65 CATTTATGCGAGTGACC
75886575 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
75886599 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
79 3 0.03
80 88 0.96
81 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTTATGCTAGCGACTATATCCGGACTAAGATCCGAAGGC
ATTTATGCGAGTGACC
Found at i:75890391 original size:42 final size:42
Alignment explanation
Indices: 75890326--75890405 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
75890316 ACAAGGGCAT
* * *
75890326 AGACACGGGCGTGTATCTGAGCCGTGTGTACCACACGGGAAA
1 AGACACGAGCGTGTATCTCAGCCGTGTGTACCAAACGGGAAA
* *
75890368 AGACACGAGCGTGTGTCTCAGCCGTGTGTGCCAAACGG
1 AGACACGAGCGTGTATCTCAGCCGTGTGTACCAAACGG
75890406 TCTAGAACAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.24, C:0.25, G:0.34, T:0.17
Consensus pattern (42 bp):
AGACACGAGCGTGTATCTCAGCCGTGTGTACCAAACGGGAAA
Found at i:75895067 original size:22 final size:22
Alignment explanation
Indices: 75895042--75895120 Score: 104
Period size: 22 Copynumber: 3.5 Consensus size: 22
75895032 CAGCTCCTAT
75895042 GAGCTTACTGTTTAGCTCAATA
1 GAGCTTACTGTTTAGCTCAATA
* * *
75895064 GAGCTTATTGTTCAGCTCGATA
1 GAGCTTACTGTTTAGCTCAATA
* *
75895086 GAGCTTACCGTTTCAGCTCATTA
1 GAGCTTACTGTTT-AGCTCAATA
75895109 GAGCTTACTGTT
1 GAGCTTACTGTT
75895121 CATCAACTCA
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
22 29 0.62
23 18 0.38
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (22 bp):
GAGCTTACTGTTTAGCTCAATA
Found at i:75895104 original size:23 final size:22
Alignment explanation
Indices: 75895019--75895116 Score: 101
Period size: 22 Copynumber: 4.4 Consensus size: 22
75895009 TAGATCACTG
* *
75895019 GAGCTTACCATTTCAGCTCCTA
1 GAGCTTACCGTTTCAGCTCATA
*
75895041 TGAGCTTACTGTTT-AGCTCAATA
1 -GAGCTTACCGTTTCAGCTC-ATA
**
75895064 GAGCTTATTG-TTCAGCTCGATA
1 GAGCTTACCGTTTCAGCTC-ATA
75895086 GAGCTTACCGTTTCAGCTCATTA
1 GAGCTTACCGTTTCAGCTCA-TA
75895109 GAGCTTAC
1 GAGCTTAC
75895117 TGTTCATCAA
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
21 2 0.03
22 31 0.48
23 31 0.48
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (22 bp):
GAGCTTACCGTTTCAGCTCATA
Found at i:75896998 original size:13 final size:13
Alignment explanation
Indices: 75896980--75897006 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
75896970 ATAAAGTTTG
75896980 TAAAAATTGCCCA
1 TAAAAATTGCCCA
75896993 TAAAAATTGCCCA
1 TAAAAATTGCCCA
75897006 T
1 T
75897007 TGATGATAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.26
Consensus pattern (13 bp):
TAAAAATTGCCCA
Found at i:75903860 original size:42 final size:41
Alignment explanation
Indices: 75903813--75903903 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 41
75903803 CACACGGCCA
*
75903813 AGACACACGC-TGTGTTCTAGGCCGTGTAGCACATACCAGCAG
1 AGACACACGCGTGTG-TCTAGGCCGTGTAGCACACA-CAGCAG
** * *
75903855 AGACACGGGCGTGTGTCTTGGCCGTGTAGCACACACAGCTG
1 AGACACACGCGTGTGTCTAGGCCGTGTAGCACACACAGCAG
75903896 AGACACAC
1 AGACACAC
75903904 ACCCGTGTCT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
41 11 0.27
42 26 0.63
43 4 0.10
ACGTcount: A:0.25, C:0.29, G:0.29, T:0.18
Consensus pattern (41 bp):
AGACACACGCGTGTGTCTAGGCCGTGTAGCACACACAGCAG
Found at i:75921465 original size:51 final size:51
Alignment explanation
Indices: 75921410--75921560 Score: 203
Period size: 51 Copynumber: 3.0 Consensus size: 51
75921400 TACGTACATC
* * * *
75921410 ATACCAGACTGTTATAGCCTCTTTTATCTATGGTTTTACGCCATATACCTT
1 ATACCAGACTGTCATAGCCTCTTTCATCTATGATCTTACGCCATATACCTT
* * *
75921461 ATACCAGACTGTCATAGCTTGTTTCATCTATAATCTTACGCCATATACCTT
1 ATACCAGACTGTCATAGCCTCTTTCATCTATGATCTTACGCCATATACCTT
* * * *
75921512 ATACTAGACTATCATATCCTCTTTCATCTATGATCTTATGCCATATACC
1 ATACCAGACTGTCATAGCCTCTTTCATCTATGATCTTACGCCATATACC
75921561 GTTGTCACGG
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 86 1.00
ACGTcount: A:0.26, C:0.25, G:0.09, T:0.39
Consensus pattern (51 bp):
ATACCAGACTGTCATAGCCTCTTTCATCTATGATCTTACGCCATATACCTT
Found at i:75932884 original size:16 final size:17
Alignment explanation
Indices: 75932842--75932884 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
75932832 TTATTATATA
*
75932842 ATAATAAATATTTTTAT
1 ATAATTAATATTTTTAT
*
75932859 ATAAAT-ATATTTTTAT
1 ATAATTAATATTTTTAT
75932875 -TAATTAATAT
1 ATAATTAATAT
75932885 ATTAATATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 4 0.18
16 14 0.64
17 4 0.18
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATAATTAATATTTTTAT
Found at i:75933189 original size:12 final size:12
Alignment explanation
Indices: 75933172--75933198 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
75933162 TTATTAAGAC
75933172 AAAAATTGAAAA
1 AAAAATTGAAAA
75933184 AAAAATTGAAAA
1 AAAAATTGAAAA
75933196 AAA
1 AAA
75933199 GAGAGAGTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (12 bp):
AAAAATTGAAAA
Found at i:75933843 original size:12 final size:12
Alignment explanation
Indices: 75933826--75933850 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
75933816 CACTCAGCAG
75933826 GACATATGGCAA
1 GACATATGGCAA
75933838 GACATATGGCAA
1 GACATATGGCAA
75933850 G
1 G
75933851 TTGTTGGACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.28, T:0.16
Consensus pattern (12 bp):
GACATATGGCAA
Found at i:75938493 original size:20 final size:20
Alignment explanation
Indices: 75938468--75938507 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
75938458 TGTTTTTCAA
75938468 GTTTCATCCTTTTTCATTTT
1 GTTTCATCCTTTTTCATTTT
75938488 GTTTCATCCTTTTTCATTTT
1 GTTTCATCCTTTTTCATTTT
75938508 CTTATAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.20, G:0.05, T:0.65
Consensus pattern (20 bp):
GTTTCATCCTTTTTCATTTT
Found at i:75943543 original size:43 final size:43
Alignment explanation
Indices: 75943491--75943604 Score: 156
Period size: 43 Copynumber: 2.7 Consensus size: 43
75943481 GCTGGTGAAT
*
75943491 AATATTATCGGGCTTCGGGCCTAGCAGGCTATAATACCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATACCGGTGA
* * * *
75943534 GATAATATCGGGCTTTGGGCCTAGCAAGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATACCGGTGA
* **
75943577 AATGATATCGGGCTTCAAGCCTAGCAGG
1 AATAATATCGGGCTTCGGGCCTAGCAGG
75943605 TGAAATGCTG
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (43 bp):
AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATACCGGTGA
Found at i:75947685 original size:16 final size:16
Alignment explanation
Indices: 75947664--75947696 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
75947654 CAGTTGGAGT
75947664 AGTTAGTTTGTTTAGA
1 AGTTAGTTTGTTTAGA
75947680 AGTTAGTTTGTTTAGA
1 AGTTAGTTTGTTTAGA
75947696 A
1 A
75947697 TTTGTTAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.48
Consensus pattern (16 bp):
AGTTAGTTTGTTTAGA
Found at i:75950340 original size:40 final size:40
Alignment explanation
Indices: 75950270--75950487 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
75950260 AAACCAAGTA
* * *
75950270 CCTTCGGGAATTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
75950309 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
75950349 CTTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
75950389 CCTTCGGGACTTAGCCCGGATATAGTAACCCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
75950429 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
75950469 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
75950488 TTGCCATCCG
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 14 0.09
40 150 0.91
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:75952970 original size:25 final size:25
Alignment explanation
Indices: 75952935--75953021 Score: 79
Period size: 25 Copynumber: 3.5 Consensus size: 25
75952925 TAGCTTCCTA
*
75952935 AAACAATTAAAATTAAATTATATCT
1 AAACAAATAAAATTAAATTATATCT
* *
75952960 AAACAAATAAAA-AAAATGACT-TCT
1 AAACAAATAAAATTAAATTA-TATCT
* * *
75952984 AAAAAAACCAAAATTAAATTATATAT
1 AAACAAA-TAAAATTAAATTATATCT
*
75953010 TAACAAATAAAA
1 AAACAAATAAAA
75953022 CAAATGAAAT
Statistics
Matches: 47, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
24 14 0.30
25 21 0.45
26 12 0.26
ACGTcount: A:0.63, C:0.09, G:0.01, T:0.26
Consensus pattern (25 bp):
AAACAAATAAAATTAAATTATATCT
Found at i:75953040 original size:50 final size:49
Alignment explanation
Indices: 75952943--75953040 Score: 133
Period size: 50 Copynumber: 1.9 Consensus size: 49
75952933 TAAAACAATT
* *
75952943 AAAATTAAATTATATCTAAACAAATAAAAAAAATGACTTCTAAAAAAACC
1 AAAATTAAATTATATATAAACAAATAAAAAAAATGAATTCT-AAAAAACC
* *
75952993 AAAATTAAATTATATATTAACAAATAAAACAAATGAAATTCCTAAAAA
1 AAAATTAAATTATATATAAACAAATAAAAAAAATG-AATT-CTAAAAA
75953041 TTGAAATCTA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
50 32 0.76
51 8 0.19
52 2 0.05
ACGTcount: A:0.62, C:0.10, G:0.02, T:0.26
Consensus pattern (49 bp):
AAAATTAAATTATATATAAACAAATAAAAAAAATGAATTCTAAAAAACC
Found at i:75953819 original size:30 final size:30
Alignment explanation
Indices: 75953783--75953840 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
75953773 TAAATTAATG
*
75953783 ATCACATCTAATAATAATGATTAAAAAAAT
1 ATCACATCTAATAATAATGACTAAAAAAAT
*
75953813 ATCACATTTAATAATAATGACTAAAAAA
1 ATCACATCTAATAATAATGACTAAAAAA
75953841 TAATGGTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.57, C:0.10, G:0.03, T:0.29
Consensus pattern (30 bp):
ATCACATCTAATAATAATGACTAAAAAAAT
Found at i:75957966 original size:25 final size:25
Alignment explanation
Indices: 75957932--75957979 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
75957922 ACGATTTTTC
*
75957932 TCAAAATTTTACTGGGGTAAAATCG
1 TCAAAATTTTACTGGAGTAAAATCG
75957957 TCAAAATTTTACTGGAGTAAAAT
1 TCAAAATTTTACTGGAGTAAAAT
75957980 TTGGATAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (25 bp):
TCAAAATTTTACTGGAGTAAAATCG
Found at i:75960742 original size:79 final size:79
Alignment explanation
Indices: 75960610--75960767 Score: 280
Period size: 79 Copynumber: 2.0 Consensus size: 79
75960600 AAAAGAAAGA
* *
75960610 AGAATTCCCTTGTGATCAAATGATAATTGGACCAACCCTTGTGGTAGGTATTATCATGCGATAGG
1 AGAATTCCCTTGTGATCAAATGATAATTGGACCAACCCTTATGGTAGGCATTATCATGCGATAGG
75960675 TCAAGAAATTCTAT
66 TCAAGAAATTCTAT
*
75960689 AGAATTCCCTTGTGATCAAATGATAATTGGACCAACCCTTATGGTAGGCATTATCATGTGATAGG
1 AGAATTCCCTTGTGATCAAATGATAATTGGACCAACCCTTATGGTAGGCATTATCATGCGATAGG
*
75960754 TTAAGAAATTCTAT
66 TCAAGAAATTCTAT
75960768 CTTCAAAAGA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
79 75 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (79 bp):
AGAATTCCCTTGTGATCAAATGATAATTGGACCAACCCTTATGGTAGGCATTATCATGCGATAGG
TCAAGAAATTCTAT
Found at i:75964082 original size:73 final size:73
Alignment explanation
Indices: 75963963--75964109 Score: 240
Period size: 73 Copynumber: 2.0 Consensus size: 73
75963953 TAAAATGTAG
* *
75963963 ATGAACCTTGTGGTTATAAACACTTGAAGGATGGAAAGGTGGTCTTTCTCGTTCTATATGTCGAT
1 ATGAACCTTGTGGTTACAAACACTTGAAGGATGGAAAGGTGGTCTTTCTCGTTCTATATGTCAAT
75964028 GACATTCT
66 GACATTCT
** * *
75964036 ATGAACCTTGTGGTTACAAACACTTGGGGGATGGAAAGGTGGTCTTTTTCGTTCTATCTGTCAAT
1 ATGAACCTTGTGGTTACAAACACTTGAAGGATGGAAAGGTGGTCTTTCTCGTTCTATATGTCAAT
75964101 GACATTCT
66 GACATTCT
75964109 A
1 A
75964110 CTTATTGGAA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
73 68 1.00
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (73 bp):
ATGAACCTTGTGGTTACAAACACTTGAAGGATGGAAAGGTGGTCTTTCTCGTTCTATATGTCAAT
GACATTCT
Found at i:75975120 original size:40 final size:40
Alignment explanation
Indices: 75975065--75975144 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
75975055 GAGGAAGGTA
75975065 GGTGCCGCGTCATTTCTTGATCATCCTCATGTTTAGCATG
1 GGTGCCGCGTCATTTCTTGATCATCCTCATGTTTAGCATG
75975105 GGTGCCGCGTCATTTCTTGATCATCCTCATGTTTAGCATG
1 GGTGCCGCGTCATTTCTTGATCATCCTCATGTTTAGCATG
75975145 CTCGAGATGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.15, C:0.25, G:0.23, T:0.38
Consensus pattern (40 bp):
GGTGCCGCGTCATTTCTTGATCATCCTCATGTTTAGCATG
Found at i:75981489 original size:40 final size:40
Alignment explanation
Indices: 75981419--75981596 Score: 245
Period size: 40 Copynumber: 4.5 Consensus size: 40
75981409 AAACCAAGTA
* *
75981419 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
75981458 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
75981498 CCTTCAGGACTTAGCCCGGATATAATAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
75981538 CCTTTGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
75981578 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
75981597 TTACCATCTG
Statistics
Matches: 125, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
39 15 0.12
40 110 0.88
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:75988464 original size:40 final size:40
Alignment explanation
Indices: 75988364--75988628 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
75988354 GCTCCTCGTT
* * * *
75988364 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
75988404 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
75988443 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
75988483 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
75988523 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
75988563 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
75988604 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
75988629 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75988588 original size:80 final size:80
Alignment explanation
Indices: 75988332--75988628 Score: 254
Period size: 80 Copynumber: 3.7 Consensus size: 80
75988322 AAATCACGTA
* ** * * *
75988332 CCTTC-GGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
75988393 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
75988409 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
75988472 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
75988489 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
75988553 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
75988569 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
75988629 CAGCATTCAA
Statistics
Matches: 181, Mismatches: 26, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
77 6 0.03
78 6 0.03
79 50 0.28
80 106 0.59
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:75988637 original size:41 final size:41
Alignment explanation
Indices: 75988560--75988637 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
75988550 TTTGTATCTC
* * *
75988560 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
75988601 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
75988638 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:75996364 original size:39 final size:40
Alignment explanation
Indices: 75996319--75996490 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
75996309 GCTCCTCGTT
* * *
75996319 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
75996359 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
75996398 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
75996438 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
75996478 CAAATGCCTTCGG
1 CAAATGCCTTCGG
75996491 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:75996419 original size:40 final size:39
Alignment explanation
Indices: 75996321--75996543 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
75996311 TCCTCGTTCA
* * * *
75996321 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
75996360 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
75996399 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
75996439 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
75996479 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
75996520 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
75996544 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:75996503 original size:80 final size:79
Alignment explanation
Indices: 75996319--75996543 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
75996309 GCTCCTCGTT
* * * * *
75996319 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
75996383 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
75996398 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
75996463 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
75996478 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
75996542 GA
63 GA
75996544 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:75996552 original size:41 final size:41
Alignment explanation
Indices: 75996475--75996552 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
75996465 TTTGTATCTC
* * *
75996475 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
75996516 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
75996553 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:76004051 original size:48 final size:48
Alignment explanation
Indices: 76003980--76004399 Score: 547
Period size: 48 Copynumber: 8.8 Consensus size: 48
76003970 ACCATGCTAA
76003980 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* *
76004028 ATGTGCCTGTGTAAGACCATGTCTAGGACATGGGATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
76004076 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* ** * * *
76004124 ATGTGCCTGTGTTAGATGATGTTTGGGGCATGGCATCGGCGATGGTAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * *
76004172 ATGTGCTTATCTAAGACCATGTATGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* *
76004220 GTGTG-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
1 ATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * * * *
76004268 GTGTACCAGAGTATGACCATGTTTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * *
76004316 TTGTGCCAGTGTAAGATCATGTCTAGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* ** * *
76004364 GTG-GATTCATGTAAGACCATGTCGGGGACATGGCAT
1 ATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCAT
76004400 TGGTACTTTA
Statistics
Matches: 323, Mismatches: 46, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
47 2 0.01
48 320 0.99
49 1 0.00
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
Found at i:76012625 original size:27 final size:27
Alignment explanation
Indices: 76012595--76012767 Score: 213
Period size: 27 Copynumber: 6.4 Consensus size: 27
76012585 TGGGCAAAAT
* * *
76012595 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76012622 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
76012649 GGTATTTCTACCCGACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76012676 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
76012703 AATAATTCTATCCTAC-AGGGATATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* * *
76012730 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
76012757 GGTAATTCTAC
1 GGTAATTCTAC
76012768 AACTTATCCA
Statistics
Matches: 125, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 3 0.02
27 119 0.95
28 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:76012685 original size:54 final size:54
Alignment explanation
Indices: 76012595--76012767 Score: 240
Period size: 54 Copynumber: 3.2 Consensus size: 54
76012585 TGGGCAAAAT
* *
76012595 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* *
76012649 GGTATTTCTACCCGACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
** * * * *
76012703 AATAATTCTATCCTAC-AGGGATATTTCAGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCCACAAGGG-TATTTCGGTAATTCTACCCTACAGGGGTATTTC
76012757 GGTAATTCTAC
1 GGTAATTCTAC
76012768 AACTTATCCA
Statistics
Matches: 104, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
53 4 0.04
54 100 0.96
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (54 bp):
GGTAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:76016112 original size:17 final size:18
Alignment explanation
Indices: 76016080--76016113 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76016070 CTCTCCTAAA
*
76016080 ACAATTTTGATCTTTCTC
1 ACAATTCTGATCTTTCTC
76016098 ACAATTCTG-TCTTTCT
1 ACAATTCTGATCTTTCT
76016114 GTATGCTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.24, G:0.06, T:0.50
Consensus pattern (18 bp):
ACAATTCTGATCTTTCTC
Found at i:76018521 original size:27 final size:26
Alignment explanation
Indices: 76018473--76018526 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
76018463 TCACACAAGT
*
76018473 TAGTCATTTACACACGAGGGGCAAAA
1 TAGTCATTTACACACGAAGGGCAAAA
* *
76018499 TAGTCATTTCACACCCTAAGGGCAAAA
1 TAGTCATTT-ACACACGAAGGGCAAAA
76018526 T
1 T
76018527 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (26 bp):
TAGTCATTTACACACGAAGGGCAAAA
Found at i:76018534 original size:27 final size:27
Alignment explanation
Indices: 76018491--76018547 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
76018481 TACACACGAG
*
76018491 GGGCAAAATAGTCATTTCACACCC-TAA
1 GGGCAAAATAGTAATTTCAC-CCCATAA
* *
76018518 GGGCAAAATGGTAATTTTACCCCATAA
1 GGGCAAAATAGTAATTTCACCCCATAA
76018545 GGG
1 GGG
76018548 TATCTCGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (27 bp):
GGGCAAAATAGTAATTTCACCCCATAA
Found at i:76018575 original size:27 final size:27
Alignment explanation
Indices: 76018527--76018726 Score: 247
Period size: 27 Copynumber: 7.4 Consensus size: 27
76018517 AGGGCAAAAT
* * * * *
76018527 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
76018554 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
76018581 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
76018608 GGTAATTCTATCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
76018635 GGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
76018662 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
76018689 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
76018716 GGTAATTCTAC
1 GGTAATTCTAC
76018727 AACTTATCCA
Statistics
Matches: 146, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:76018584 original size:54 final size:54
Alignment explanation
Indices: 76018526--76018726 Score: 278
Period size: 54 Copynumber: 3.7 Consensus size: 54
76018516 AAGGGCAAAA
* * *
76018526 TGGTAATTT-TACCCCATAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTT
1 TGGT-ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
* *
76018580 TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTT
1 TGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
* * *
76018634 TGGTATTTCTACCCTACAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTT
1 TGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
* * * *
76018688 CGGTAATTCTACCTTACAAGGGTATTTCGGTAATTCTAC
1 TGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTAC
76018727 AACTTATCCA
Statistics
Matches: 130, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
53 4 0.03
54 126 0.97
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
TGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
Found at i:76024560 original size:6 final size:7
Alignment explanation
Indices: 76024545--76024574 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
76024535 TGGTTCATGG
76024545 TTTTATT
1 TTTTATT
76024552 TTTTATT
1 TTTTATT
76024559 TTTTA-T
1 TTTTATT
76024565 TTTTATT
1 TTTTATT
76024572 TTT
1 TTT
76024575 GGCTTTGGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTATT
Found at i:76024567 original size:13 final size:14
Alignment explanation
Indices: 76024545--76024574 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
76024535 TGGTTCATGG
76024545 TTTTATTTTTTATT
1 TTTTATTTTTTATT
76024559 TTTTA-TTTTTATT
1 TTTTATTTTTTATT
76024572 TTT
1 TTT
76024575 GGCTTTGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (14 bp):
TTTTATTTTTTATT
Found at i:76028379 original size:42 final size:41
Alignment explanation
Indices: 76028308--76028410 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 41
76028298 TTGTGATTTG
* *
76028308 CGTGTAAGACCATGTTTGGGACATCGGCATCGTATATGAGTT
1 CGTGTAAGACCATGTCTGAGACATCGGCATCG-ATATGAGTT
* *
76028350 CGTGTAAGACCTTGTCTGAGACAGT-GGCATCGATATGTGATT
1 CGTGTAAGACCATGTCTGAGACA-TCGGCATCGATATGAG-TT
* *
76028392 ACATGTAAGACCACGTCTG
1 -CGTGTAAGACCATGTCTG
76028411 GGACGTTGGC
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
41 6 0.12
42 29 0.57
43 16 0.31
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (41 bp):
CGTGTAAGACCATGTCTGAGACATCGGCATCGATATGAGTT
Found at i:76028402 original size:43 final size:43
Alignment explanation
Indices: 76028250--76028414 Score: 158
Period size: 43 Copynumber: 3.8 Consensus size: 43
76028240 ACATAGGATT
* * *
76028250 TCGATATGTGATTTCATGTAAGACCACGTCTGGGAC-GTTGCCA
1 TCGATATGTGAGTTCATGTAAGACCATGTCTGGGACAG-TGGCA
* * * *
76028293 TCGATTTGTGATTTGCGTGTAAGACCATGTTTGGGACA-TCGGCA
1 TCGATATGTGAGTT-CATGTAAGACCATGTCTGGGACAGT-GGCA
* * * *
76028337 TCG-TATATGAGTTCGTGTAAGACCTTGTCTGAGACAGTGGCA
1 TCGATATGTGAGTTCATGTAAGACCATGTCTGGGACAGTGGCA
*
76028379 TCGATATGTGA-TTACATGTAAGACCACGTCTGGGAC
1 TCGATATGTGAGTT-CATGTAAGACCATGTCTGGGAC
76028415 GTTGGCGTTA
Statistics
Matches: 100, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
42 29 0.29
43 46 0.46
44 25 0.25
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
TCGATATGTGAGTTCATGTAAGACCATGTCTGGGACAGTGGCA
Found at i:76030490 original size:20 final size:21
Alignment explanation
Indices: 76030458--76030496 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
76030448 AATGAAACAG
76030458 ATTTAGCAAAATTA-AACACA
1 ATTTAGCAAAATTATAACACA
76030478 ATTT-GCAACAATTATAACA
1 ATTTAGCAA-AATTATAACA
76030497 TAAATAAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.51, C:0.15, G:0.05, T:0.28
Consensus pattern (21 bp):
ATTTAGCAAAATTATAACACA
Found at i:76031291 original size:7 final size:7
Alignment explanation
Indices: 76031281--76031307 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
76031271 AATGATGAAT
76031281 GATGAGG
1 GATGAGG
76031288 GATGAGG
1 GATGAGG
76031295 GATGAGG
1 GATGAGG
76031302 GATGAG
1 GATGAG
76031308 TAGAAATGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.56, T:0.15
Consensus pattern (7 bp):
GATGAGG
Found at i:76037791 original size:46 final size:46
Alignment explanation
Indices: 76037424--76037790 Score: 545
Period size: 46 Copynumber: 8.0 Consensus size: 46
76037414 TTTCTGTCAT
** * *
76037424 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
** *
76037470 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
** * * *
76037516 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTTAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
**
76037562 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
*
76037608 GTTCCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
*
76037654 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
* *
76037700 GTTTCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
* * *
76037746 GTTCCCATGGTATTTTTCAAACATGGTCTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
76037791 GAGAGCACAC
Statistics
Matches: 302, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 302 1.00
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
Found at i:76039345 original size:25 final size:23
Alignment explanation
Indices: 76039302--76039447 Score: 159
Period size: 25 Copynumber: 6.0 Consensus size: 23
76039292 TGCTTTATCA
*
76039302 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
76039326 TAGTAACTGGGGCAAAAGCCCTTTT
1 TA-TAACTGGGGCATAAGCCC-TTT
*
76039351 TATAACTGGGGCATAAACCCTTCAT
1 TATAACTGGGGCATAAGCCCTT--T
*
76039376 CATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
76039399 ATCATAACTGGGGCATAAGCCCTTT
1 -T-ATAACTGGGGCATAAGCCCTTT
* *
76039424 AATAACTGGGGCATAAGCCTTTT
1 TATAACTGGGGCATAAGCCCTTT
76039447 T
1 T
76039448 GCACTTCCTC
Statistics
Matches: 105, Mismatches: 10, Indels: 15
0.81 0.08 0.12
Matches are distributed among these distances:
23 24 0.23
24 22 0.21
25 59 0.56
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:76039355 original size:49 final size:47
Alignment explanation
Indices: 76039302--76039447 Score: 170
Period size: 49 Copynumber: 3.0 Consensus size: 47
76039292 TGCTTTATCA
* *
76039302 TATAACTGGAGGCCT-AGCCTCTTTTAGTAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTA-TAACTGGGGCATAAGCCCTTTT
* *
76039351 TATAACTGGGGCATAAACCCTTCATCATAACTGGGGCATAAGCCCTTTAT
1 TATAACTGGGGCATAAGCCCTT--TTATAACTGGGGCATAAGCCCTTT-T
* *
76039401 CATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAG-CCTTTT
1 TATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTT
76039447 T
1 T
76039448 GCACTTCCTC
Statistics
Matches: 85, Mismatches: 8, Indels: 11
0.82 0.08 0.11
Matches are distributed among these distances:
46 1 0.01
47 5 0.06
48 24 0.28
49 32 0.38
50 23 0.27
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (47 bp):
TATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTT
Found at i:76039422 original size:50 final size:47
Alignment explanation
Indices: 76039324--76039447 Score: 167
Period size: 48 Copynumber: 2.6 Consensus size: 47
76039314 CCTAGCCTCT
* * *
76039324 TTTAGTAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAACCC
1 TTTAATAACTGGGGCATAAGCCCTTTTCATAACTGGGGCATAAACCC
* *
76039371 TTCATCATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCC
1 TT--TAATAACTGGGGCATAAGCCCTTT-TCATAACTGGGGCATAAACCC
*
76039421 TTTAATAACTGGGGCATAAGCCTTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
76039448 GCACTTCCTC
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
47 3 0.04
48 22 0.33
49 21 0.31
50 21 0.31
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTCATAACTGGGGCATAAACCC
Found at i:76039520 original size:20 final size:20
Alignment explanation
Indices: 76039492--76039542 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
76039482 GCATTTATGA
*
76039492 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
76039512 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
76039532 ACATATCATGT
1 ACATATCATGT
76039543 TTATCAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:76040818 original size:27 final size:27
Alignment explanation
Indices: 76040783--76040866 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
76040773 GGGCATATTC
* *
76040783 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
76040810 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
*
76040837 GTCACTTTACCCTACAGGAGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
76040864 GTC
1 GTC
76040867 TTTTTACCTA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:76040958 original size:27 final size:27
Alignment explanation
Indices: 76040928--76041013 Score: 84
Period size: 27 Copynumber: 3.1 Consensus size: 27
76040918 GTAAATCTAC
76040928 AAACCAAAGGTATTTCAGTAATTTTGT
1 AAACCAAAGGTATTTCAGTAATTTTGT
* *
76040955 AAACCAATGGTATTTCTA-TAATTTTTAT
1 AAACCAAAGGTATTTC-AGTAA-TTTTGT
* * * *
76040983 AAAGTCAAGGGTATTTCTGTAACTTTGT
1 AAA-CCAAAGGTATTTCAGTAATTTTGT
76041011 AAA
1 AAA
76041014 TCAGGGGTAT
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
27 18 0.38
28 16 0.33
29 14 0.29
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCAGTAATTTTGT
Found at i:76041041 original size:27 final size:27
Alignment explanation
Indices: 76040963--76041143 Score: 111
Period size: 27 Copynumber: 6.6 Consensus size: 27
76040953 GTAAACCAAT
* *
76040963 GGTATTTCT-ATAATTTTTATAAAGTCAAG
1 GGTATTT-TGATAA-TTTTACAAA-TCAGG
* **
76040992 GGTATTTCTG-TAACTTTGTAAATCAGG
1 GGTATTT-TGATAATTTTACAAATCAGG
* *
76041019 GGTATCTTGATAATTTTACAAAT-TGAG
1 GGTATTTTGATAATTTTACAAATCAG-G
* * * *
76041046 GGTATTTCGATAATTTCACAAACCAAG
1 GGTATTTTGATAATTTTACAAATCAGG
* *
76041073 GGTATTTTGGTAATTTTATAAA-CTAGG
1 GGTATTTTGATAATTTTACAAATC-AGG
* * *
76041100 GGTATTTTGGTAATTTTACAAACCAAG
1 GGTATTTTGATAATTTTACAAATCAGG
*
76041127 GTTATTTT-AGTAATTTT
1 GGTATTTTGA-TAATTTT
76041144 GTAAATCGAG
Statistics
Matches: 122, Mismatches: 23, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 4 0.03
27 98 0.80
28 8 0.07
29 12 0.10
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (27 bp):
GGTATTTTGATAATTTTACAAATCAGG
Found at i:76041141 original size:81 final size:81
Alignment explanation
Indices: 76040988--76041142 Score: 181
Period size: 81 Copynumber: 1.9 Consensus size: 81
76040978 TTTATAAAGT
* ***
76040988 CAAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATCTTGATAATTTTACAAATTGAGGGTATTT
1 CAAGGGTATTTCTGTAACTTTATAAATCAGGGGTATCTTGATAATTTTACAAACCAAGGGTATTT
*
76041053 CGATAATTTCACAAAC
66 AGATAATTTCACAAAC
* * * *
76041069 CAAGGGTATTT-TGGTAATTTTATAAA-CTAGGGGTATTTTGGTAATTTTACAAACCAAGGTTAT
1 CAAGGGTATTTCT-GTAACTTTATAAATC-AGGGGTATCTTGATAATTTTACAAACCAAGGGTA-
76041132 TTTAG-TAATTT
63 TTTAGATAATTT
76041143 TGTAAATCGA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
80 2 0.03
81 56 0.90
82 4 0.06
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (81 bp):
CAAGGGTATTTCTGTAACTTTATAAATCAGGGGTATCTTGATAATTTTACAAACCAAGGGTATTT
AGATAATTTCACAAAC
Found at i:76041157 original size:54 final size:54
Alignment explanation
Indices: 76040955--76041157 Score: 164
Period size: 54 Copynumber: 3.7 Consensus size: 54
76040945 GTAATTTTGT
* * **
76040955 AAACCAATGGTATTTCTA-TAATTTTTATAAAGTCAAGGGTATTTCTG-TAACTTT-GT
1 AAACCAAGGGTATTT-TAGTAA-TTTTATAAA-TCGAGGGTATTTC-GATAA-TTTCAC
* * * * *
76041011 AAATCAGGGGTATCTT-GATAATTTTACAAATTGAGGGTATTTCGATAATTTCAC
1 AAACCAAGGGTATTTTAG-TAATTTTATAAATCGAGGGTATTTCGATAATTTCAC
* * * * *
76041065 AAACCAAGGGTATTTTGGTAATTTTATAAA-CTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTATAAATCGA-GGGTATTTCGATAATTTCAC
* *
76041119 AAACCAAGGTTATTTTAGTAATTTTGTAAATCGAGGGTA
1 AAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTA
76041158 AAACAGTAAT
Statistics
Matches: 118, Mismatches: 22, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
53 5 0.04
54 87 0.74
55 12 0.10
56 14 0.12
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.39
Consensus pattern (54 bp):
AAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTATTTCGATAATTTCAC
Found at i:76041165 original size:27 final size:27
Alignment explanation
Indices: 76041135--76041238 Score: 163
Period size: 27 Copynumber: 3.9 Consensus size: 27
76041125 AGGTTATTTT
* *
76041135 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* *
76041162 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
76041189 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
76041216 GGTAATTCTATAAATCGAGGGTA
1 AGTAATTCTATAAATCGAGGGTA
76041239 CTTTGGTAAT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (27 bp):
AGTAATTCTATAAATCGAGGGTAAAAC
Found at i:76041167 original size:54 final size:54
Alignment explanation
Indices: 76041029--76041252 Score: 153
Period size: 54 Copynumber: 4.1 Consensus size: 54
76041019 GGTATCTTGA
* * *** * * *
76041029 TAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAACCAAGGGTATTTTGG
1 TAATTTTATAAATCGAGGGTAAAACGGTAATTTTACAAACCAAGGGTATTTTAG
* **** *
76041083 TAATTTTATAAA-CTAGGGGTATTTTGGTAATTTTACAAACCAAGGTTATTTTAG
1 TAATTTTATAAATCGA-GGGTAAAACGGTAATTTTACAAACCAAGGGTATTTTAG
* * * ** * ****
76041137 TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAG
1 TAATTTTATAAATCGAGGGTAAAACGGTAATTTTACAAACCAAGGGTATTTTAG
* * * * * * *
76041191 TAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTGG
1 TAATTTTATAAATCGAGGGTAAAACGGTAATTTTACAAACCAAGGGTATTTTAG
76041245 TAATTTTA
1 TAATTTTA
76041253 CAATTTGAGG
Statistics
Matches: 133, Mismatches: 35, Indels: 4
0.77 0.20 0.02
Matches are distributed among these distances:
53 1 0.01
54 130 0.98
55 2 0.02
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (54 bp):
TAATTTTATAAATCGAGGGTAAAACGGTAATTTTACAAACCAAGGGTATTTTAG
Found at i:76043838 original size:16 final size:16
Alignment explanation
Indices: 76043819--76043857 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
76043809 AATTTTTCCC
*
76043819 TTTTTCCTTCTTTCTT
1 TTTTTCCTTCCTTCTT
76043835 TTTTTCCTTCCTTCTT
1 TTTTTCCTTCCTTCTT
*
76043851 TCTTTCC
1 TTTTTCC
76043858 CCTGCTCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTCCTTCCTTCTT
Found at i:76043906 original size:17 final size:18
Alignment explanation
Indices: 76043886--76043927 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
76043876 TCATCCTTTC
76043886 TTTCTTTTTCTATT-CTT
1 TTTCTTTTTCTATTCCTT
*
76043903 TTTCTTTTTTTATTCCTT
1 TTTCTTTTTCTATTCCTT
*
76043921 TTACTTT
1 TTTCTTT
76043928 ATATATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 13 0.59
18 9 0.41
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTCTTTTTCTATTCCTT
Found at i:76043932 original size:2 final size:2
Alignment explanation
Indices: 76043927--76043955 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
76043917 CCTTTTACTT
76043927 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
76043956 ATAACTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76045734 original size:85 final size:86
Alignment explanation
Indices: 76045579--76045736 Score: 232
Period size: 85 Copynumber: 1.8 Consensus size: 86
76045569 ATGTGATATC
* * * *
76045579 GTGTAAGACCACGTCTGGGACATTGGCATCGATTTGGTATTTACGTGTAAGACCACGTCTGGGAC
1 GTGTAAGACCACGTCTAGGACAGTGGCATCGATTTGGTATTTACATGTAAGACCACATCTGGGAC
76045644 GTTGGCATCATACTTGATTTT
66 GTTGGCATCATACTTGATTTT
*
76045665 GTGTAAGACC-CTGTCTAGGACAGTGGCATCGATATTTG-A-TTACATGTAAGACCACATCTGGG
1 GTGTAAGACCAC-GTCTAGGACAGTGGCATCGAT-TTGGTATTTACATGTAAGACCACATCTGGG
76045727 ACGTTGGCAT
64 ACGTTGGCAT
76045737 TGTACGAGGT
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
85 32 0.49
86 30 0.46
87 3 0.05
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (86 bp):
GTGTAAGACCACGTCTAGGACAGTGGCATCGATTTGGTATTTACATGTAAGACCACATCTGGGAC
GTTGGCATCATACTTGATTTT
Found at i:76045735 original size:43 final size:43
Alignment explanation
Indices: 76045578--76045736 Score: 182
Period size: 43 Copynumber: 3.7 Consensus size: 43
76045568 TATGTGATAT
* *
76045578 CGTGTAAGACCACGTCTGGGACATTGGCATCGAT-TTGGTATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTG-A-TTA
* *
76045622 CGTGTAAGACCACGTCTGGGACGTTGGCATC-ATACTTGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
* *
76045664 TGTGTAAGACC-CTGTCTAGGACAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTA
* *
76045707 CATGTAAGACCACATCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
76045737 TGTACGAGGT
Statistics
Matches: 97, Mismatches: 12, Indels: 13
0.80 0.10 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.29
43 35 0.36
44 33 0.34
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:76052178 original size:46 final size:46
Alignment explanation
Indices: 76052042--76052168 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
76052032 TATATATACA
** * *
76052042 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATAAC
1 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTCATATC
*
76052088 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTCATATC
*
76052134 CATCTCATATACGTTTCACATTAGCCATTCGGCTT
1 CATCTCATACACGTTTCACATTAGCCATTCGGCTT
76052169 CGCCACATAT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.24, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTCATATC
Found at i:76052253 original size:47 final size:47
Alignment explanation
Indices: 76052201--76052466 Score: 480
Period size: 47 Copynumber: 5.7 Consensus size: 47
76052191 GGTCATTCTA
76052201 CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
76052248 CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGG-
1 CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
* * *
76052294 TTATATCACACATATGCAAGTTCACATTCATCACATTGGCCATTCGGC
1 CT-TATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
*
76052342 CTTATCACGTATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
76052389 CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
76052436 CTTATCACATATATGCATGTTCACATTCATC
1 CTTATCACATATATGCATGTTCACATTCATC
76052467 TCATAAAATC
Statistics
Matches: 209, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 207 0.99
48 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:76052396 original size:22 final size:22
Alignment explanation
Indices: 76052323--76052445 Score: 67
Period size: 22 Copynumber: 5.3 Consensus size: 22
76052313 GTTCACATTC
76052323 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
76052345 ATCACGTATAT-G-CATGTTC-ACATT
1 ATCAC--AT-TGGCCA--TTCGGCCTT
76052369 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
76052392 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
76052416 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
76052439 ATCACAT
1 ATCACAT
76052446 ATATGCATGT
Statistics
Matches: 75, Mismatches: 10, Indels: 32
0.64 0.09 0.27
Matches are distributed among these distances:
22 26 0.35
23 15 0.20
24 15 0.20
25 19 0.25
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:76062290 original size:26 final size:26
Alignment explanation
Indices: 76062261--76062368 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
76062251 TGGTACAAAT
76062261 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
76062287 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
76062313 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
76062339 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
76062365 TGAT
1 TGAT
76062369 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:76062323 original size:52 final size:52
Alignment explanation
Indices: 76062261--76062368 Score: 198
Period size: 52 Copynumber: 2.1 Consensus size: 52
76062251 TGGTACAAAT
76062261 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTTCA
* *
76062313 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTTCA
76062365 TGAT
1 TGAT
76062369 GGGCATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTTCA
Found at i:76064048 original size:54 final size:53
Alignment explanation
Indices: 76063962--76064101 Score: 208
Period size: 54 Copynumber: 2.6 Consensus size: 53
76063952 AGGAACCATC
* * *
76063962 CTGGTGGCTATGCCATAATTATCTGATTTGGTGGCTCTGCCACATATATTTGTT
1 CTGGTGGCTATGCCA-CATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
76064016 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
76064070 CTGGTGGCTCTGCCACAATATCTGTATCTGGT
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGT
76064102 TACTTCGTCA
Statistics
Matches: 79, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
53 7 0.09
54 72 0.91
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:76064098 original size:32 final size:27
Alignment explanation
Indices: 76063962--76064101 Score: 169
Period size: 27 Copynumber: 5.2 Consensus size: 27
76063952 AGGAACCATC
* *
76063962 CTGGTGGCTATGCCATA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
* * *
76063989 TTGGTGGCTCTGCCACATATATTTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
76064016 CTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGAT
*
76064043 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
76064070 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
76064097 CTGGT
1 CTGGT
76064102 TACTTCGTCA
Statistics
Matches: 97, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 9 0.09
27 85 0.88
28 3 0.03
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Done.