Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 224 of 373
Found at i:76072468 original size:28 final size:28
Alignment explanation
Indices: 76072415--76072658 Score: 235
Period size: 28 Copynumber: 8.7 Consensus size: 28
76072405 AACACGTCAG
* *
76072415 GAAAGAATAAGCCCTTATGG-AGAACTAT
1 GAAAGAATAAGCCTTTGTGGCA-AACTAT
* *
76072443 AAAAAAATAAGCCTTTGTGGCAAACTAT
1 GAAAGAATAAGCCTTTGTGGCAAACTAT
* **
76072471 GAAAAGAATAAGCCTTTGAGGTGAACTAT
1 G-AAAGAATAAGCCTTTGTGGCAAACTAT
* ** *
76072500 GAAAGAATAAGTCTTTGTGGGGAATTA-
1 GAAAGAATAAGCCTTTGTGGCAAACTAT
* *
76072527 GAAAAGAATGAGCCTTTATGGCAAACTAT
1 G-AAAGAATAAGCCTTTGTGGCAAACTAT
*
76072556 GAAAGAATAAGTCTTTGTGG-AGAACTAT
1 GAAAGAATAAGCCTTTGTGGCA-AACTAT
* * *
76072584 GAAAGAATAAGTCTTTGTGGCGAGCTAT
1 GAAAGAATAAGCCTTTGTGGCAAACTAT
* **
76072612 GAAAGAATAAGCCTTTGTTGTGAACTAT
1 GAAAGAATAAGCCTTTGTGGCAAACTAT
*
76072640 GAAAG-ATTAGCCTTTGTGG
1 GAAAGAATAAGCCTTTGTGG
76072659 TGAACTCTGT
Statistics
Matches: 180, Mismatches: 30, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
27 14 0.08
28 140 0.78
29 26 0.14
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.27
Consensus pattern (28 bp):
GAAAGAATAAGCCTTTGTGGCAAACTAT
Found at i:76072594 original size:84 final size:84
Alignment explanation
Indices: 76072415--76072664 Score: 306
Period size: 84 Copynumber: 3.0 Consensus size: 84
76072405 AACACGTCAG
* * * * *
76072415 GAAAGAATAAGCCCTTATGGAGAACTATAAAAAAATAAGCCTTTGTGGCAAACTATGAAAAGAAT
1 GAAAGAATAAGTCTTTGTGGAGAACTAGAAAAGAATAAGCCTTTGTGGCAAACTATG-AAAGAAT
*
76072480 AAGCCTTTGAGGTGAACTAT
65 AAGCCTTTGTGGTGAACTAT
* * * *
76072500 GAAAGAATAAGTCTTTGTGGGGAATTAGAAAAGAATGAGCCTTTATGGCAAACTATGAAAGAATA
1 GAAAGAATAAGTCTTTGTGGAGAACTAGAAAAGAATAAGCCTTTGTGGCAAACTATGAAAGAATA
* *
76072565 AGTCTTTGTGGAGAACTAT
66 AGCCTTTGTGGTGAACTAT
* * * **
76072584 GAAAGAATAAGTCTTTGTGGCGAGCTATG-AAAGAATAAGCCTTTGTTGTGAACTATGAAAG-AT
1 GAAAGAATAAGTCTTTGTGGAGAACTA-GAAAAGAATAAGCCTTTGTGGCAAACTATGAAAGAAT
*
76072647 TAGCCTTTGTGGTGAACT
65 AAGCCTTTGTGGTGAACT
76072665 CTGTATGAAG
Statistics
Matches: 141, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
83 17 0.12
84 75 0.53
85 49 0.35
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.27
Consensus pattern (84 bp):
GAAAGAATAAGTCTTTGTGGAGAACTAGAAAAGAATAAGCCTTTGTGGCAAACTATGAAAGAATA
AGCCTTTGTGGTGAACTAT
Found at i:76072644 original size:56 final size:56
Alignment explanation
Indices: 76072415--76072664 Score: 272
Period size: 56 Copynumber: 4.5 Consensus size: 56
76072405 AACACGTCAG
* * * * *
76072415 GAAAGAATAAGCCCTTATGGAGAACTATAAAAAAATAAGCCTTTGTGGCA-AACTAT
1 GAAAGAATAAGCCTTTGTGGCGAACTATGAAAGAATAAGCCTTTGTGG-AGAACTAT
* * * * *
76072471 GAAAAGAATAAGCCTTTGAGGTGAACTATGAAAGAATAAGTCTTTGTGGGGAATTA-
1 G-AAAGAATAAGCCTTTGTGGCGAACTATGAAAGAATAAGCCTTTGTGGAGAACTAT
* * * *
76072527 GAAAAGAATGAGCCTTTATGGCAAACTATGAAAGAATAAGTCTTTGTGGAGAACTAT
1 G-AAAGAATAAGCCTTTGTGGCGAACTATGAAAGAATAAGCCTTTGTGGAGAACTAT
* * * *
76072584 GAAAGAATAAGTCTTTGTGGCGAGCTATGAAAGAATAAGCCTTTGTTGTGAACTAT
1 GAAAGAATAAGCCTTTGTGGCGAACTATGAAAGAATAAGCCTTTGTGGAGAACTAT
* *
76072640 GAAAG-ATTAGCCTTTGTGGTGAACT
1 GAAAGAATAAGCCTTTGTGGCGAACT
76072665 CTGTATGAAG
Statistics
Matches: 163, Mismatches: 28, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
55 16 0.10
56 102 0.63
57 45 0.28
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.27
Consensus pattern (56 bp):
GAAAGAATAAGCCTTTGTGGCGAACTATGAAAGAATAAGCCTTTGTGGAGAACTAT
Found at i:76080602 original size:22 final size:22
Alignment explanation
Indices: 76080537--76080596 Score: 102
Period size: 22 Copynumber: 2.7 Consensus size: 22
76080527 CTAGGTACTT
**
76080537 GTCTTGAGACATAAGGTGTCAA
1 GTCTTGAGACATAAAATGTCAA
76080559 GTCTTGAGACATAAAATGTCAA
1 GTCTTGAGACATAAAATGTCAA
76080581 GTCTTGAGACATAAAA
1 GTCTTGAGACATAAAA
76080597 CATCAAAGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (22 bp):
GTCTTGAGACATAAAATGTCAA
Found at i:76082160 original size:48 final size:48
Alignment explanation
Indices: 76082089--76082319 Score: 327
Period size: 48 Copynumber: 4.8 Consensus size: 48
76082079 GACACCGTGC
* *
76082089 TAAATGTGCCTGTGTAAGACCATGCCTGGGACATGGCATCGGTGATGA
1 TAAATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
* * *
76082137 TAAATGTGTCTGGGTAAGACCATGTCTGGGACATGGTATCGGCGATGA
1 TAAATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
76082185 TAAATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
1 TAAATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
* * * * * * *
76082233 TATATGTGCCAGTATAAGACCATGTTTGGGAAATGGGATCTGCGATGA
1 TAAATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
** *
76082281 TATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 TAAATGTGCCTGTGTAAGACCATGTCTGGGACATGGCAT
76082320 TGATAATGAT
Statistics
Matches: 163, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 163 1.00
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (48 bp):
TAAATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
Found at i:76082329 original size:48 final size:48
Alignment explanation
Indices: 76082092--76082366 Score: 318
Period size: 48 Copynumber: 5.7 Consensus size: 48
76082082 ACCGTGCTAA
* * * *
76082092 ATGTGCCTGTGTAAGACCATGCCTGGGACATGGCATCGGTGATGATAA
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * * *
76082140 ATGTGTCTGGGTAAGACCATGTCTGGGACATGGTATCGGCGATGATAA
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
*
76082188 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * * *
76082236 ATGTGCCAGTATAAGACCATGTTTGGGAAATGGGATCTGCGATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * ***
76082284 GTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTGATAATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * *
76082332 GTGGGTTCA-TGTAAGACCATGTCGGGGACATGGCA
1 ATGTG-CCAGTGTAAGACCATGTCTGGGACATGGCA
76082367 CCAATCCCGA
Statistics
Matches: 198, Mismatches: 28, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
48 196 0.99
49 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.27
Consensus pattern (48 bp):
ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
Found at i:76085205 original size:4 final size:4
Alignment explanation
Indices: 76085193--76085222 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
76085183 ATACATACCA
76085193 AATT GAATT AATT AATT AATT AATT AATT A
1 AATT -AATT AATT AATT AATT AATT AATT A
76085223 TAAAGTCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (4 bp):
AATT
Found at i:76086677 original size:54 final size:52
Alignment explanation
Indices: 76086598--76086801 Score: 158
Period size: 54 Copynumber: 3.8 Consensus size: 52
76086588 ATCTCAAACT
*** * *
76086598 CTTTTATTTT-CCCCAAAAAAATTACTTTTCCTCAAACCCTTAAAAATTTTTC
1 CTTTTATTTTCCCCCAAAACTTTTACTTCT-CTCAAACCCTAAAAAATTTTTC
* * **
76086650 CTTTTATTTTCCCTCCAAAATTTTTACTTCTCTAAAAACCCTCAAAACTTTTTTC
1 CTTTTATTTTCCC-CCAAAACTTTTACTTCTCT-CAAACCCT-AAAAAATTTTTC
* * * * **
76086705 CTTTTAATTTCCTTCTAAAACTTTTACTTCTCTCAAACCTCCAAAAAAAATTTC
1 CTTTTATTTTCC-CCCAAAACTTTTACTTCTCTCAAACC-CTAAAAAATTTTTC
** * * *
76086759 CTTTTGCTTTCCCCCAAAACTTTTAGTTTCTATGAAACCCTAA
1 CTTTTATTTTCCCCCAAAACTTTTA-CTTCTCTCAAACCCTAA
76086802 TTTTTTTGAA
Statistics
Matches: 119, Mismatches: 26, Indels: 13
0.75 0.16 0.08
Matches are distributed among these distances:
52 10 0.08
53 18 0.15
54 53 0.45
55 38 0.32
ACGTcount: A:0.30, C:0.26, G:0.01, T:0.42
Consensus pattern (52 bp):
CTTTTATTTTCCCCCAAAACTTTTACTTCTCTCAAACCCTAAAAAATTTTTC
Found at i:76086730 original size:55 final size:54
Alignment explanation
Indices: 76086631--76086783 Score: 159
Period size: 55 Copynumber: 2.8 Consensus size: 54
76086621 ACTTTTCCTC
* * *
76086631 AAACCCTTAAAAATTTTTCCTTTTATTTTCCCTCCAAAATTTTTACTTCTCTAA
1 AAACCCTCAAAAATTTTTCCTTTTAATTTCCCTCCAAAACTTTTACTTCTCTAA
* * * *
76086685 AAACCCTCAAAACTTTTTTCCTTTTAATTTCCTTCTAAAACTTTTACTTCTCT-C
1 AAACCCTCAAAA-ATTTTTCCTTTTAATTTCCCTCCAAAACTTTTACTTCTCTAA
** **
76086739 AAA-CCTCCAAAAAAAATTTCCTTTTGCTTTCCC-CCAAAACTTTTA
1 AAACCCT-C-AAAAATTTTTCCTTTTAATTTCCCTCCAAAACTTTTA
76086784 GTTTCTATGA
Statistics
Matches: 82, Mismatches: 14, Indels: 7
0.80 0.14 0.07
Matches are distributed among these distances:
53 14 0.17
54 29 0.35
55 39 0.48
ACGTcount: A:0.30, C:0.27, G:0.01, T:0.42
Consensus pattern (54 bp):
AAACCCTCAAAAATTTTTCCTTTTAATTTCCCTCCAAAACTTTTACTTCTCTAA
Found at i:76087053 original size:20 final size:20
Alignment explanation
Indices: 76087014--76087053 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
76087004 AAAAATCACA
*
76087014 TTTTTTTATATTTAATATAT
1 TTTTTTTATATTTAAAATAT
76087034 TTTTTTTA-ATTTCAAAATAT
1 TTTTTTTATATTT-AAAATAT
76087054 ATGGTGACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTTTTATATTTAAAATAT
Found at i:76092653 original size:26 final size:26
Alignment explanation
Indices: 76092624--76092677 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
76092614 TGAACCCCGG
76092624 TTTGCAACTT-ACTTGGCGAACACTAA
1 TTTGCAACTTAAC-TGGCGAACACTAA
* *
76092650 TTTGCAACTTAACTGGTGAACCCTAA
1 TTTGCAACTTAACTGGCGAACACTAA
76092676 TT
1 TT
76092678 CGCCAAACAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (26 bp):
TTTGCAACTTAACTGGCGAACACTAA
Found at i:76094610 original size:13 final size:13
Alignment explanation
Indices: 76094573--76094623 Score: 52
Period size: 12 Copynumber: 3.8 Consensus size: 13
76094563 GCAAAGTGCA
*
76094573 TAAAAACACAATT
1 TAAAAACATAATT
76094586 TATAAAACCATAATT
1 TA-AAAA-CATAATT
76094601 TAAAAACAT-ATCT
1 TAAAAACATAAT-T
76094614 T-AAAACATAA
1 TAAAAACATAA
76094624 ACTTGCATAG
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
12 9 0.27
13 8 0.24
14 8 0.24
15 8 0.24
ACGTcount: A:0.59, C:0.14, G:0.00, T:0.27
Consensus pattern (13 bp):
TAAAAACATAATT
Found at i:76094658 original size:12 final size:12
Alignment explanation
Indices: 76094643--76094698 Score: 58
Period size: 12 Copynumber: 4.4 Consensus size: 12
76094633 GGAGTATGCA
*
76094643 TAAAACTTATTT
1 TAAAACATATTT
76094655 TAAAACATAGCTTT
1 TAAAACATA--TTT
* *
76094669 AAAAACTTATTT
1 TAAAACATATTT
76094681 TGAAAACATATTT
1 T-AAAACATATTT
76094694 TAAAA
1 TAAAA
76094699 ACAGAGTGTC
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
12 15 0.42
13 11 0.31
14 10 0.28
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.39
Consensus pattern (12 bp):
TAAAACATATTT
Found at i:76094675 original size:26 final size:26
Alignment explanation
Indices: 76094644--76094700 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
76094634 GAGTATGCAT
76094644 AAAACTTATTTT-AAAACATAGCTTTA
1 AAAACTTATTTTGAAAACATA-CTTTA
*
76094670 AAAACTTATTTTGAAAACATATTTTA
1 AAAACTTATTTTGAAAACATACTTTA
76094696 AAAAC
1 AAAAC
76094701 AGAGTGTCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 21 0.72
27 8 0.28
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.37
Consensus pattern (26 bp):
AAAACTTATTTTGAAAACATACTTTA
Found at i:76094686 original size:13 final size:13
Alignment explanation
Indices: 76094644--76094701 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
76094634 GAGTATGCAT
*
76094644 AAAACTTATTTT-
1 AAAACATATTTTA
*
76094656 AAAACATAGCTTTA
1 AAAACATA-TTTTA
* *
76094670 AAAACTTATTTTG
1 AAAACATATTTTA
76094683 AAAACATATTTTA
1 AAAACATATTTTA
76094696 AAAACA
1 AAAACA
76094702 GAGTGTCAGA
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
12 7 0.19
13 23 0.62
14 7 0.19
ACGTcount: A:0.50, C:0.10, G:0.03, T:0.36
Consensus pattern (13 bp):
AAAACATATTTTA
Found at i:76095273 original size:26 final size:26
Alignment explanation
Indices: 76095217--76095275 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
76095207 TTGGAGAACT
76095217 CCTAGTTTGCAACTTACCTGGTGTAC
1 CCTAGTTTGCAACTTACCTGGTGTAC
*
76095243 ACTAGTTTGCAACTTTA-CTGGT-TAAC
1 CCTAGTTTGCAAC-TTACCTGGTGT-AC
76095269 CCTAGTT
1 CCTAGTT
76095276 CGCCAAATAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 1 0.03
26 25 0.86
27 3 0.10
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (26 bp):
CCTAGTTTGCAACTTACCTGGTGTAC
Found at i:76095690 original size:118 final size:118
Alignment explanation
Indices: 76095534--76095895 Score: 457
Period size: 118 Copynumber: 3.0 Consensus size: 118
76095524 CACACCATGT
*
76095534 AACATCTATTTAACATGCAATGAACGTATATGAAAATACTTACACACTTGTACAACAATATGTAG
1 AACATCTATTTAACATGCAATGAACGTACATGAAAATACTTACACACTTGTACAACAATATGTAG
* * *
76095599 CACGTTCAGTCACAATTTTTACACATAACATTGGACTTATATAACCCAGAATAC
66 CACGTTCAGTCACCATTTTTACACA-AACATTGGACTCATATGACCCAGAATAC
* * *
76095653 AACATCT-TTTAACATGCAATGAACATACATGCAAATACTCACACACTTGTACAACAATA--T-G
1 AACATCTATTTAACATGCAATGAACGTACATGAAAATACTTACACACTTGTACAACAATATGTAG
* * *
76095714 CATGTTCAGTCACCATTTTTACAC-AATATTGGAATCATATGACCCAGAATAC
66 CACGTTCAGTCACCATTTTTACACAAACATTGGACTCATATGACCCAGAATAC
* * * *
76095766 AACATTTATTTAACATGCAATGAACGTACATGTAAATA-TTCACTCACTTGTACAATAATATGTA
1 AACATCTATTTAACATGCAATGAACGTACATGAAAATACTT-ACACACTTGTACAACAATATGTA
* *
76095830 TTTGCAGCATGTTCAGTCACCATTTTTACACACAACATTGGACTCATATGACCCAAAATAA
65 ---GCA-C--GTTCAGTCACCATTTTTACACA-AACATTGGACTCATATGACCCAGAATAC
76095891 AACAT
1 AACAT
76095896 AAATCATTTA
Statistics
Matches: 209, Mismatches: 21, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
113 31 0.15
114 45 0.22
115 23 0.11
116 2 0.01
118 48 0.23
119 7 0.03
120 3 0.01
123 21 0.10
125 29 0.14
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (118 bp):
AACATCTATTTAACATGCAATGAACGTACATGAAAATACTTACACACTTGTACAACAATATGTAG
CACGTTCAGTCACCATTTTTACACAAACATTGGACTCATATGACCCAGAATAC
Found at i:76097563 original size:18 final size:18
Alignment explanation
Indices: 76097525--76097563 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
76097515 TTTGGTTTGG
* *
76097525 TTATTTTACTTAGTATTT
1 TTATTTAACTTAGTATAT
*
76097543 TTATTTAACTTAGTGTAT
1 TTATTTAACTTAGTATAT
76097561 TTA
1 TTA
76097564 CTTTTTACAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.05, G:0.08, T:0.62
Consensus pattern (18 bp):
TTATTTAACTTAGTATAT
Found at i:76099170 original size:14 final size:15
Alignment explanation
Indices: 76099144--76099172 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
76099134 AAATCAGATC
76099144 ATGTCACCAACAAAA
1 ATGTCACCAACAAAA
76099159 ATGTCA-CAACAAAA
1 ATGTCACCAACAAAA
76099173 CAATATCAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.24, G:0.07, T:0.14
Consensus pattern (15 bp):
ATGTCACCAACAAAA
Found at i:76099877 original size:19 final size:19
Alignment explanation
Indices: 76099853--76099890 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
76099843 GATAATGAAG
76099853 AATGTCACACCATTGGCTT
1 AATGTCACACCATTGGCTT
76099872 AATGTCACACCATTGGCTT
1 AATGTCACACCATTGGCTT
76099891 GATAGAAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (19 bp):
AATGTCACACCATTGGCTT
Found at i:76107578 original size:43 final size:43
Alignment explanation
Indices: 76107517--76107617 Score: 175
Period size: 43 Copynumber: 2.3 Consensus size: 43
76107507 TTGTGAATTC
*
76107517 TCCACAGCTCGTGTGAGCAGCATCGTGTAGCCTAACATCTCGA
1 TCCACAGCTCGTGTGAGCAGCATCATGTAGCCTAACATCTCGA
76107560 TCCACAGCTCGTGTGAGCAGCATCATGTAGCCTAACATCTCGA
1 TCCACAGCTCGTGTGAGCAGCATCATGTAGCCTAACATCTCGA
* *
76107603 CCCACAGCTTGTGTG
1 TCCACAGCTCGTGTG
76107618 GCCAGGCCCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.24
Consensus pattern (43 bp):
TCCACAGCTCGTGTGAGCAGCATCATGTAGCCTAACATCTCGA
Found at i:76109186 original size:42 final size:44
Alignment explanation
Indices: 76109140--76109235 Score: 160
Period size: 44 Copynumber: 2.2 Consensus size: 44
76109130 TCCTAGACTG
*
76109140 GGTCTTACACG-AAATCA-AATACGATGCCAATGTCCCAGACGT
1 GGTCTTACACGTAAATCATAATACGATGCCAACGTCCCAGACGT
*
76109182 GGTCTTACACGTAAATCATAATTCGATGCCAACGTCCCAGACGT
1 GGTCTTACACGTAAATCATAATACGATGCCAACGTCCCAGACGT
76109226 GGTCTTACAC
1 GGTCTTACAC
76109236 AAAAACACAT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
42 11 0.22
43 6 0.12
44 33 0.66
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (44 bp):
GGTCTTACACGTAAATCATAATACGATGCCAACGTCCCAGACGT
Found at i:76112226 original size:43 final size:43
Alignment explanation
Indices: 76112167--76112251 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
76112157 TGAGGTATGT
*
76112167 AGCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCA
1 AGCATCCGAGCTCGTTGAGAGGTCCGAGTTCATGATGGATGCA
*
76112210 AGCATCTGAGCTCGTTGAGAGGTCCGAGTTCATGATGGATGC
1 AGCATCCGAGCTCGTTGAGAGGTCCGAGTTCATGATGGATGC
76112252 GATTCATGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.26
Consensus pattern (43 bp):
AGCATCCGAGCTCGTTGAGAGGTCCGAGTTCATGATGGATGCA
Found at i:76119287 original size:47 final size:47
Alignment explanation
Indices: 76119221--76119363 Score: 141
Period size: 47 Copynumber: 3.0 Consensus size: 47
76119211 GATAATTGAA
* *
76119221 TCTATTTTAATATTCTACCATCTCGGATAGGCTGACAACGATGGTTT
1 TCTATTTCAATATACTACCATCTCGGATAGGCTGACAACGATGGTTT
* * *
76119268 TCT-TTTCCAATATGCTACCATCT-GGA-ATGGCCTGACAACGATAGCTT
1 TCTATTT-CAATATACTACCATCTCGGATA-GG-CTGACAACGATGGTTT
* * * *
76119315 TCTATTTTAATATACTGCCATCTCGGAT-GGCTCGAGAATGATGGTTT
1 TCTATTTCAATATACTACCATCTCGGATAGGCT-GACAACGATGGTTT
76119362 TC
1 TC
76119364 ACAATTTACT
Statistics
Matches: 78, Mismatches: 11, Indels: 14
0.76 0.11 0.14
Matches are distributed among these distances:
45 1 0.01
46 10 0.13
47 61 0.78
48 6 0.08
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.36
Consensus pattern (47 bp):
TCTATTTCAATATACTACCATCTCGGATAGGCTGACAACGATGGTTT
Found at i:76121592 original size:11 final size:11
Alignment explanation
Indices: 76121573--76121631 Score: 75
Period size: 11 Copynumber: 5.3 Consensus size: 11
76121563 AAACACAACA
76121573 AAAAGCAGCAGC
1 AAAA-CAGCAGC
76121585 AAAACAGCA-C
1 AAAACAGCAGC
76121595 TAAAACAGCAGC
1 -AAAACAGCAGC
*
76121607 AAAACAGCATC
1 AAAACAGCAGC
*
76121618 AAAACAGCACC
1 AAAACAGCAGC
76121629 AAA
1 AAA
76121632 TAGCAATAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
10 1 0.02
11 37 0.86
12 5 0.12
ACGTcount: A:0.56, C:0.27, G:0.14, T:0.03
Consensus pattern (11 bp):
AAAACAGCAGC
Found at i:76121642 original size:21 final size:21
Alignment explanation
Indices: 76121560--76121652 Score: 82
Period size: 22 Copynumber: 4.3 Consensus size: 21
76121550 CAAAAAAATA
*
76121560 ACAAAACA-CAACAAAAAGCAGC
1 ACAAAACAGCAA-TAAAA-CAGC
*
76121582 AGCAAAACAGCACTAAAACAGC
1 A-CAAAACAGCAATAAAACAGC
76121604 AGCAAAACAGC-ATCAAAACAGC
1 A-CAAAACAGCAAT-AAAACAGC
* * *
76121626 ACCAAATAGCAATAAAATAGC
1 ACAAAACAGCAATAAAACAGC
76121647 ACAAAA
1 ACAAAA
76121653 AACAGCATCG
Statistics
Matches: 60, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
21 20 0.33
22 27 0.45
23 11 0.18
24 2 0.03
ACGTcount: A:0.59, C:0.25, G:0.11, T:0.05
Consensus pattern (21 bp):
ACAAAACAGCAATAAAACAGC
Found at i:76125251 original size:18 final size:18
Alignment explanation
Indices: 76125228--76125262 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
76125218 TGGACGGTGG
76125228 AGGTGGTGGTGAGCTAGA
1 AGGTGGTGGTGAGCTAGA
76125246 AGGTGGTGGTGAGCTAG
1 AGGTGGTGGTGAGCTAG
76125263 GGATTTGGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.20, C:0.06, G:0.51, T:0.23
Consensus pattern (18 bp):
AGGTGGTGGTGAGCTAGA
Found at i:76125382 original size:11 final size:10
Alignment explanation
Indices: 76125348--76125379 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
76125338 GTTACTTTAA
76125348 AATTAAAAAT
1 AATTAAAAAT
76125358 AA--AAAAAT
1 AATTAAAAAT
76125366 AATTAAAAAT
1 AATTAAAAAT
76125376 AATT
1 AATT
76125380 TAATATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
8 8 0.40
10 12 0.60
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
AATTAAAAAT
Found at i:76125384 original size:18 final size:18
Alignment explanation
Indices: 76125343--76125390 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
76125333 GTAAAGTTAC
76125343 TTTAA-AATTAAAAATAA
1 TTTAATAATTAAAAATAA
***
76125360 AAAAATAATTAAAAATAA
1 TTTAATAATTAAAAATAA
76125378 TTTAAT-ATTAAAA
1 TTTAATAATTAAAA
76125391 TCAGGTTGGG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TTTAATAATTAAAAATAA
Found at i:76125895 original size:16 final size:17
Alignment explanation
Indices: 76125871--76125902 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
76125861 TATTTTACTT
76125871 ATTCTTAATTTTAAATC
1 ATTCTTAATTTTAAATC
76125888 ATTC-TAATTTTAAAT
1 ATTCTTAATTTTAAAT
76125903 TTAAACCTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTCTTAATTTTAAATC
Found at i:76134883 original size:7 final size:7
Alignment explanation
Indices: 76134873--76134897 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
76134863 TAAACTTAGG
76134873 GGTTTAA
1 GGTTTAA
76134880 GGTTTAA
1 GGTTTAA
76134887 GGTTTAA
1 GGTTTAA
76134894 GGTT
1 GGTT
76134898 CAAGTTCAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (7 bp):
GGTTTAA
Found at i:76146448 original size:32 final size:32
Alignment explanation
Indices: 76146412--76146475 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
76146402 ACCAAGTCCA
76146412 TAAGGGCTAAGGCAAAAGAAGTAATGGAGCCC
1 TAAGGGCTAAGGCAAAAGAAGTAATGGAGCCC
76146444 TAAGGGCTAAGGCAAAAGAAGTAATGGAGCCC
1 TAAGGGCTAAGGCAAAAGAAGTAATGGAGCCC
76146476 ATACATGTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.41, C:0.16, G:0.31, T:0.12
Consensus pattern (32 bp):
TAAGGGCTAAGGCAAAAGAAGTAATGGAGCCC
Found at i:76149467 original size:5 final size:5
Alignment explanation
Indices: 76149457--76149519 Score: 56
Period size: 5 Copynumber: 11.8 Consensus size: 5
76149447 ATTAAAAATA
*
76149457 ATTAT ATTAT ATTAT ATTAT ATTTAT ATTAAAT ATTA- ATATAT ATTCAA
1 ATTAT ATTAT ATTAT ATTAT A-TTAT ATT--AT ATTAT AT-TAT ATT-AT
*
76149506 ATTAT GTTAT ATTA
1 ATTAT ATTAT ATTA
76149520 AATAAGAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
4 2 0.04
5 30 0.62
6 11 0.23
7 5 0.10
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (5 bp):
ATTAT
Found at i:76149509 original size:23 final size:23
Alignment explanation
Indices: 76149465--76149509 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
76149455 TAATTATATT
* *
76149465 ATATTATATTATATTTATATTAA
1 ATATTATATTATATTCAAATTAA
76149488 ATATTA-ATATATATTCAAATTA
1 ATATTATAT-TATATTCAAATTA
76149510 TGTTATATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (23 bp):
ATATTATATTATATTCAAATTAA
Found at i:76149889 original size:26 final size:26
Alignment explanation
Indices: 76149853--76149912 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 26
76149843 GCGATAAGAG
76149853 TATTATATTATAA-ATGAAAAATATTA
1 TATTATATTATAACAT-AAAAATATTA
*
76149879 TATTATATTATAAGCATAAAATTATTA
1 TATTATATTATAA-CATAAAAATATTA
76149906 TATTATA
1 TATTATA
76149913 ATAAATTAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
26 13 0.42
27 16 0.52
28 2 0.06
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (26 bp):
TATTATATTATAACATAAAAATATTA
Found at i:76150441 original size:274 final size:275
Alignment explanation
Indices: 76149910--76150459 Score: 1030
Period size: 274 Copynumber: 2.0 Consensus size: 275
76149900 TTATTATATT
76149910 ATAATAAATTAGAACAATCAACTCACTATTTAATAGTAATAAAAATTTTAGTCTATATTAATTAT
1 ATAATAAATTAGAACAATCAACTCACTATTTAATAGTAATAAAAATTTTAGTCTATATTAATTAT
76149975 CCTAACTCGTTTCACCTAACTTTAGTTGCATCGACTAAATTATATATTAATACTAATACTATATA
66 CCTAACTCGTTTCACCTAACTTTAGTTGCATCGACTAAATTATATATTAATACTAATACTATATA
*
76150040 AAAAGTATAAAATTAATAATTTCTTCTATTATAATAACAAATAATAAAACTTTATCTGTTAAATG
131 AAAAGTATAAAATTAATAATTTCTTCTATTATAATAACAAATAATAAAACTTTATCAGTTAAATG
*
76150105 TGCCCGTTTTAAACTTTAAAATAGAAAATTAAAAAATTAAAAAGAATCATTTATATAACAAACAA
196 TGCCCGTTTTAAACTTTAAAATAGAAAATTAAAAAATTAAAAAGAATCATTGATATAACAAACAA
76150170 ATGGAAAAGAGAGAG
261 ATGGAAAAGAGAGAG
*
76150185 ATAATAAATTAGAACAATCAACTCACTATTTAATAGTAATAAAAATTTTAGTCTATATTGATTAT
1 ATAATAAATTAGAACAATCAACTCACTATTTAATAGTAATAAAAATTTTAGTCTATATTAATTAT
* *
76150250 CCTAACTCGTTTCACCTAACTTTAGTTGCATCGACTAAATTGTATATTGATACTAATACTATAT-
66 CCTAACTCGTTTCACCTAACTTTAGTTGCATCGACTAAATTATATATTAATACTAATACTATATA
*
76150314 AAAAGTATAAAATTAATAATTTCTTCTGTTATAATAACAAATAATAAAACTTTATCAGTTAAATG
131 AAAAGTATAAAATTAATAATTTCTTCTATTATAATAACAAATAATAAAACTTTATCAGTTAAATG
*
76150379 TGCCCGTTTTAAACTTTAAAATAGAAGATTAAAAAATTAAAAAGAATCATTGATATAACAAACAA
196 TGCCCGTTTTAAACTTTAAAATAGAAAATTAAAAAATTAAAAAGAATCATTGATATAACAAACAA
76150444 ATGGAAAAGAGAGAG
261 ATGGAAAAGAGAGAG
76150459 A
1 A
76150460 GAAAGACAAA
Statistics
Matches: 268, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
274 142 0.53
275 126 0.47
ACGTcount: A:0.46, C:0.11, G:0.08, T:0.34
Consensus pattern (275 bp):
ATAATAAATTAGAACAATCAACTCACTATTTAATAGTAATAAAAATTTTAGTCTATATTAATTAT
CCTAACTCGTTTCACCTAACTTTAGTTGCATCGACTAAATTATATATTAATACTAATACTATATA
AAAAGTATAAAATTAATAATTTCTTCTATTATAATAACAAATAATAAAACTTTATCAGTTAAATG
TGCCCGTTTTAAACTTTAAAATAGAAAATTAAAAAATTAAAAAGAATCATTGATATAACAAACAA
ATGGAAAAGAGAGAG
Found at i:76150644 original size:12 final size:13
Alignment explanation
Indices: 76150619--76150650 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
76150609 AGATGATTTT
76150619 TTTATTTTTAGAG
1 TTTATTTTTAGAG
76150632 TTTATTTTT-GAG
1 TTTATTTTTAGAG
76150644 TTT-TTTT
1 TTTATTTT
76150651 ATAATTGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 4 0.21
12 6 0.32
13 9 0.47
ACGTcount: A:0.16, C:0.00, G:0.12, T:0.72
Consensus pattern (13 bp):
TTTATTTTTAGAG
Found at i:76151245 original size:10 final size:10
Alignment explanation
Indices: 76151213--76151272 Score: 63
Period size: 9 Copynumber: 6.0 Consensus size: 10
76151203 AAATTCAAAT
76151213 AATTATAAAAA
1 AATT-TAAAAA
*
76151224 ACTATTTTAAAA
1 A--ATTTAAAAA
76151236 AATTT-AAAA
1 AATTTAAAAA
76151245 AATTT-AAAA
1 AATTTAAAAA
76151254 AATTTAAAAA
1 AATTTAAAAA
76151264 AA-TTAAAAA
1 AATTTAAAAA
76151273 TATATAAATA
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
9 25 0.56
10 10 0.22
11 1 0.02
12 6 0.13
13 3 0.07
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (10 bp):
AATTTAAAAA
Found at i:76151280 original size:10 final size:9
Alignment explanation
Indices: 76151229--76151310 Score: 83
Period size: 9 Copynumber: 8.9 Consensus size: 9
76151219 AAAAAACTAT
76151229 TTTAAAAAA
1 TTTAAAAAA
76151238 TTTAAAAAA
1 TTTAAAAAA
76151247 TTTAAAAAA
1 TTTAAAAAA
76151256 TTTAAAAAA
1 TTTAAAAAA
*
76151265 ATTAAAAATA
1 TTTAAAAA-A
* * *
76151275 TATAAATAT
1 TTTAAAAAA
*
76151284 TTGTAAAATA
1 TT-TAAAAAA
**
76151294 TTTTTAAAA
1 TTTAAAAAA
76151303 TTTAAAAA
1 TTTAAAAA
76151311 GAATAATTAA
Statistics
Matches: 57, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
9 45 0.79
10 12 0.21
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:76162930 original size:22 final size:22
Alignment explanation
Indices: 76162905--76162947 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
76162895 ATCTAATTTC
76162905 ATTAAAATGTTATATGT-TTAGA
1 ATTAAAA-GTTATATGTGTTAGA
*
76162927 ATTATAAGTTATATGTGTTAG
1 ATTAAAAGTTATATGTGTTAG
76162948 GTATTATGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (22 bp):
ATTAAAAGTTATATGTGTTAGA
Found at i:76165402 original size:24 final size:24
Alignment explanation
Indices: 76165371--76165418 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
76165361 AGAAAGTTCT
76165371 CTTTTTCCCCTATAAAGTCTATTA
1 CTTTTTCCCCTATAAAGTCTATTA
*
76165395 CTTTTTCCCCTGTAAAGTCTATTA
1 CTTTTTCCCCTATAAAGTCTATTA
76165419 GAACTTTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.23, C:0.25, G:0.06, T:0.46
Consensus pattern (24 bp):
CTTTTTCCCCTATAAAGTCTATTA
Found at i:76169045 original size:49 final size:49
Alignment explanation
Indices: 76168985--76169345 Score: 580
Period size: 47 Copynumber: 7.6 Consensus size: 49
76168975 GATAATTGTG
* *
76168985 ATGTG-AA-TGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
76169032 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
76169081 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
76169130 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
76169177 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
76169224 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * *
76169273 ATGTGAAAGTG--TATATATGTGACAGGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
76169320 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
76169346 TCCCGAAGGG
Statistics
Matches: 296, Mismatches: 12, Indels: 12
0.93 0.04 0.04
Matches are distributed among these distances:
47 147 0.50
48 3 0.01
49 146 0.49
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:76169085 original size:96 final size:96
Alignment explanation
Indices: 76168985--76169345 Score: 595
Period size: 96 Copynumber: 3.8 Consensus size: 96
76168975 GATAATTGTG
*
76168985 ATGTGAATGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
76169050 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
76169081 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
1 ATGTGAAA--GTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
*
76169144 ATATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
76169177 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
76169242 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
76169273 ATGTGAAAGTGTATATATGTGACAGGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA-A-
1 ATGTGAAAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
76169336 ATGTGATAAG
66 ATGTGATAAG
76169346 TCCCGAAGGG
Statistics
Matches: 251, Mismatches: 10, Indels: 10
0.93 0.04 0.04
Matches are distributed among these distances:
94 58 0.23
95 1 0.00
96 144 0.57
98 48 0.19
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:76172489 original size:50 final size:51
Alignment explanation
Indices: 76172358--76172497 Score: 174
Period size: 50 Copynumber: 2.8 Consensus size: 51
76172348 TGATCTATTG
* * * * *
76172358 TGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAAC
1 TGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAAAAC
* * ** **
76172409 TGTGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAG-ATGC
1 TGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAAAAC
76172459 TGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGT
1 TGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGT
76172498 CACGTGTGTA
Statistics
Matches: 76, Mismatches: 13, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
50 39 0.51
51 37 0.49
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.28
Consensus pattern (51 bp):
TGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAAAAC
Found at i:76172500 original size:33 final size:33
Alignment explanation
Indices: 76172463--76172530 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
76172453 AGATGCTGAG
*
76172463 GTCACGTGTGTAGTACTAAGTGCAGGCTACTAC
1 GTCACGTGTGTAGTACTAAGTGCAGGCCACTAC
76172496 GTCACGTGTGTAGTACTAAGTGCAGGCCACTAC
1 GTCACGTGTGTAGTACTAAGTGCAGGCCACTAC
76172529 GT
1 GT
76172531 GTACCAGACT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (33 bp):
GTCACGTGTGTAGTACTAAGTGCAGGCCACTAC
Found at i:76175459 original size:46 final size:46
Alignment explanation
Indices: 76175407--76175772 Score: 473
Period size: 46 Copynumber: 8.0 Consensus size: 46
76175397 GCTCTTTGAA
* * *
76175407 ATGAAATGTGTAAGACCATGATTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
76175453 ATGAAATGTTTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
76175499 ATGAAATGAATAAGACCATGGTTGAAAGATACCATCGCAACATTAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
76175545 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
76175591 ATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
76175637 GGGAAATGAATAAGACCATGGTTGAAGGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
76175683 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
76175729 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
76175773 TCAAAGATAA
Statistics
Matches: 286, Mismatches: 33, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.00
46 285 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:76175616 original size:21 final size:21
Alignment explanation
Indices: 76175548--76175617 Score: 54
Period size: 21 Copynumber: 3.1 Consensus size: 21
76175538 ACATTATATA
76175548 AAATGTGTAAGACCATGGTTG
1 AAATGTGTAAGACCATGGTTG
* *
76175569 AAA-G-ATACCATGACAACATGATATG
1 AAATGTGTA--A-GAC--CATGGT-TG
76175594 AAATGTGTAAGACCATGGTTG
1 AAATGTGTAAGACCATGGTTG
76175615 AAA
1 AAA
76175618 GATACTATGG
Statistics
Matches: 37, Mismatches: 4, Indels: 16
0.65 0.07 0.28
Matches are distributed among these distances:
19 2 0.05
20 1 0.03
21 9 0.24
22 8 0.22
24 8 0.22
25 6 0.16
26 1 0.03
27 2 0.05
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.24
Consensus pattern (21 bp):
AAATGTGTAAGACCATGGTTG
Found at i:76175658 original size:138 final size:138
Alignment explanation
Indices: 76175410--76175772 Score: 521
Period size: 138 Copynumber: 2.6 Consensus size: 138
76175400 CTTTGAAATG
* *
76175410 AAATGTGTAAGACCATGATTGAAAGATACCATGGCAACATGATATGAAATGTTTAAGACCATGGT
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGT
* * *
76175475 TGAAAGATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATCGCAAC
66 TGAAAGATACTATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGATACCATCGCAAC
* * *
76175540 ATTATATA
131 ATGACAGA
*
76175548 AAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGATATGAAATGTGTAAGACCATGGT
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGT
* * *
76175613 TGAAAGATACTATGGCAACATGACGGGAAATGAATAAGACCATGGTTGAAGGATACCATGGCAAC
66 TGAAAGATACTATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGATACCATCGCAAC
* *
76175678 ATGACGGG
131 ATGACAGA
** * * *
76175686 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG-AAATGTGTAAGACCATGG
* *
76175750 TTGAAAGACACTATGGCATCATG
65 TTGAAAGATACTATGGCAACATG
76175773 TCAAAGATAA
Statistics
Matches: 202, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
137 1 0.00
138 201 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (138 bp):
AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGT
TGAAAGATACTATGGCAACATGACAGGAAATGAATAAGACCATGGTTGAAAGATACCATCGCAAC
ATGACAGA
Found at i:76179305 original size:40 final size:40
Alignment explanation
Indices: 76179261--76179409 Score: 210
Period size: 40 Copynumber: 3.7 Consensus size: 40
76179251 GCTACTTGCT
* *
76179261 CAAATGTCTTCGGGACTTAGCCCTGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
76179301 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * *
76179341 CAAATGCCTTTGGGACTTAGCCCGG-AATTGGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
76179381 CAAATGCCTTCAGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
76179410 CATCCGAATA
Statistics
Matches: 97, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 95 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:76188438 original size:48 final size:46
Alignment explanation
Indices: 76188380--76188600 Score: 181
Period size: 46 Copynumber: 4.7 Consensus size: 46
76188370 TATATCGAGG
* * *
76188380 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCCCAAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGC-TCT-CATCCCAAGGC
* * * * *
76188429 CGATGCATGTCCTAGACATGTCTTACATTAGCTCTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCCCAAGGC
* * * ** *
76188475 CGATGCATGTCCCATACATGTCTTACACTGGATCTCATAACATGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCCCAAGGC
* * * ** ** *
76188521 TGATTCATGTCCCAGACATGTCTTACACTGGCTCTCATAACGTGAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCCCAAGGC
* * * *
76188567 TGATGCATGTTCTAGACATGTCTTACACTGGCTC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTC
76188601 ATATACCACC
Statistics
Matches: 145, Mismatches: 27, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
46 114 0.79
47 2 0.01
48 24 0.17
49 5 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCCCAAGGC
Found at i:76188598 original size:46 final size:45
Alignment explanation
Indices: 76188430--76188600 Score: 198
Period size: 46 Copynumber: 3.7 Consensus size: 45
76188420 TCCCAAGGCC
* * * * ** *
76188430 GATGCATGTCCTAGACATGTCTTACATTAGCTCTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAAC-ATGCT
* *
76188476 GATGCATGTCCCATACATGTCTTACACTGGATCTCATAACATGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAACAT-GCT
* *
76188522 GATTCATGTCCCAGACATGTCTTACACTGGCTCTCATAACGTGACT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAACATG-CT
* *
76188568 GATGCATGTTCTAGACATGTCTTACACTGGCTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTC
76188601 ATATACCACC
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
45 3 0.03
46 104 0.97
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.32
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAACATGCT
Found at i:76189103 original size:20 final size:19
Alignment explanation
Indices: 76189062--76189104 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
76189052 TATAGTGACC
* *
76189062 CAAAATTCCTATTATTTCA
1 CAAAATTACTATCATTTCA
*
76189081 CAAAATTACTATCCATTTTA
1 CAAAATTACTAT-CATTTCA
76189101 CAAA
1 CAAA
76189105 CTTTACAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.37
Consensus pattern (19 bp):
CAAAATTACTATCATTTCA
Found at i:76196373 original size:26 final size:26
Alignment explanation
Indices: 76196344--76196505 Score: 121
Period size: 26 Copynumber: 6.2 Consensus size: 26
76196334 ATGCTAAAAA
76196344 AGCAGGCCTTGAGCTAGTGGTTATTT
1 AGCAGGCCTTGAGCTAGTGGTTATTT
** *
76196370 AGCAGGCCTCAAGCTAATGGTTATTT
1 AGCAGGCCTTGAGCTAGTGGTTATTT
* * * * * *
76196396 AGCAGACATCGAGAT-GACGCTTATTT
1 AGCAGGCCTTGAGCTAG-TGGTTATTT
* * *
76196422 AGCAGGCCTTGAGCAAGTGTTTGTTT
1 AGCAGGCCTTGAGCTAGTGGTTATTT
* * *
76196448 AGCAGACCTTGAGTTGGTGGTTATTT
1 AGCAGGCCTTGAGCTAGTGGTTATTT
* * *
76196474 AACAGGCTTTGAGCCAGT-GTATATTT
1 AGCAGGCCTTGAGCTAGTGGT-TATTT
*
76196500 ATCAGG
1 AGCAGG
76196506 TACTATGTAT
Statistics
Matches: 102, Mismatches: 31, Indels: 6
0.73 0.22 0.04
Matches are distributed among these distances:
25 2 0.02
26 99 0.97
27 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (26 bp):
AGCAGGCCTTGAGCTAGTGGTTATTT
Found at i:76196472 original size:52 final size:52
Alignment explanation
Indices: 76196344--76196500 Score: 145
Period size: 52 Copynumber: 3.0 Consensus size: 52
76196334 ATGCTAAAAA
* * * ** *
76196344 AGCAGGCCTTGAGCTAGTGGTTATTTAGCAGGCCTCAAGCTAA-TGGTTATTT
1 AGCAGACCTTGAGATGGTGGTTATTTAGCAGGCCTTGAGC-AAGTGTTTATTT
* * ** * *
76196396 AGCAGACATCGAGATGACGCTTATTTAGCAGGCCTTGAGCAAGTGTTTGTTT
1 AGCAGACCTTGAGATGGTGGTTATTTAGCAGGCCTTGAGCAAGTGTTTATTT
* * * * *
76196448 AGCAGACCTTGAGTTGGTGGTTATTTAACAGGCTTTGAGCCAGTGTATATTT
1 AGCAGACCTTGAGATGGTGGTTATTTAGCAGGCCTTGAGCAAGTGTTTATTT
76196500 A
1 A
76196501 TCAGGTACTA
Statistics
Matches: 81, Mismatches: 23, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
51 2 0.02
52 79 0.98
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (52 bp):
AGCAGACCTTGAGATGGTGGTTATTTAGCAGGCCTTGAGCAAGTGTTTATTT
Found at i:76197749 original size:21 final size:21
Alignment explanation
Indices: 76197718--76197768 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
76197708 ACGGTCTGAG
* *
76197718 CACACGAGCGTGTGGGGTAGT
1 CACACGGGCGTGTGGGGTAGC
*
76197739 CGCACGGGCGTGTGGGGTAGC
1 CACACGGGCGTGTGGGGTAGC
76197760 CACACGGGC
1 CACACGGGC
76197769 TAGCCTCTGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.16, C:0.25, G:0.45, T:0.14
Consensus pattern (21 bp):
CACACGGGCGTGTGGGGTAGC
Found at i:76199423 original size:13 final size:13
Alignment explanation
Indices: 76199405--76199439 Score: 56
Period size: 11 Copynumber: 2.8 Consensus size: 13
76199395 GGCTCGGCCC
76199405 ATATTAATTTTTT
1 ATATTAATTTTTT
76199418 ATATT-A-TTTTT
1 ATATTAATTTTTT
76199429 ATATTAATTTT
1 ATATTAATTTT
76199440 AAAAAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 10 0.50
12 2 0.10
13 8 0.40
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
ATATTAATTTTTT
Found at i:76200025 original size:17 final size:17
Alignment explanation
Indices: 76200005--76200051 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 17
76199995 ATATGCTTTT
76200005 TTCA-TTTGAGATTTAAG
1 TTCATTTTGAG-TTTAAG
76200022 TTCATTTTGAGTTTAA-
1 TTCATTTTGAGTTTAAG
*
76200038 TT-ATTTTAAGTTTA
1 TTCATTTTGAGTTTA
76200052 GATGTTTTCG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 11 0.39
16 2 0.07
17 9 0.32
18 6 0.21
ACGTcount: A:0.28, C:0.04, G:0.13, T:0.55
Consensus pattern (17 bp):
TTCATTTTGAGTTTAAG
Found at i:76205654 original size:17 final size:17
Alignment explanation
Indices: 76205632--76205664 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
76205622 CTCTTAAAGA
76205632 CCATCC-TACTACTTGGG
1 CCATCCTTAC-ACTTGGG
76205649 CCATCCTTACACTTGG
1 CCATCCTTACACTTGG
76205665 TGGTTTAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.18, C:0.36, G:0.15, T:0.30
Consensus pattern (17 bp):
CCATCCTTACACTTGGG
Found at i:76211810 original size:28 final size:28
Alignment explanation
Indices: 76211770--76211890 Score: 224
Period size: 28 Copynumber: 4.3 Consensus size: 28
76211760 ATGTACTAGA
76211770 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
76211798 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
76211826 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* *
76211854 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
76211882 ATACCCCTA
1 ATACCCCTA
76211891 GGGTTAATTT
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 91 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:76212037 original size:28 final size:27
Alignment explanation
Indices: 76211997--76212085 Score: 108
Period size: 28 Copynumber: 3.2 Consensus size: 27
76211987 GGAAGCGTCT
76211997 TGGTGGCTA-TGCCACAAATTATCTGTTC
1 TGGTGGC-ACTGCCACAAA-TATCTGTTC
* *
76212025 TGGTGGCCCTGCCACATATATCTGTTC
1 TGGTGGCACTGCCACAAATATCTGTTC
*
76212052 TAGTGGCACTGCCACAAAATATCTGTATC
1 TGGTGGCACTGCCAC-AAATATCTGT-TC
76212081 TGGTG
1 TGGTG
76212086 ATTCTGTCAC
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
27 22 0.42
28 24 0.46
29 6 0.12
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (27 bp):
TGGTGGCACTGCCACAAATATCTGTTC
Found at i:76212057 original size:27 final size:27
Alignment explanation
Indices: 76212006--76212077 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
76211996 TTGGTGGCTA
* *
76212006 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAA-TATCTGTTCTAGTGGCAC
*
76212034 TGCCACATATATCTGTTCTAGTGGCAC
1 TGCCACAAATATCTGTTCTAGTGGCAC
76212061 TGCCACAAAATATCTGT
1 TGCCAC-AAATATCTGT
76212078 ATCTGGTGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTAGTGGCAC
Found at i:76227931 original size:16 final size:16
Alignment explanation
Indices: 76227910--76227949 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
76227900 AGTTAAATGG
76227910 ATTAAAAG-AATTTGAA
1 ATTAAAAGAAATTT-AA
76227926 ATTAAAAGAAATTTAA
1 ATTAAAAGAAATTTAA
*
76227942 ATAAAAAG
1 ATTAAAAG
76227950 TCCTTTTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 17 0.77
17 5 0.23
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (16 bp):
ATTAAAAGAAATTTAA
Found at i:76229326 original size:15 final size:16
Alignment explanation
Indices: 76229305--76229346 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
76229295 TAACCTAAAT
76229305 TAATAAAATAAAATAA
1 TAATAAAATAAAATAA
76229321 -AATAAAA-ATAAATAA
1 TAATAAAATA-AAATAA
*
76229336 TAAAAAAATAA
1 TAATAAAATAA
76229347 TATCTTCCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
14 1 0.05
15 13 0.59
16 7 0.32
17 1 0.05
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (16 bp):
TAATAAAATAAAATAA
Found at i:76238807 original size:20 final size:23
Alignment explanation
Indices: 76238784--76238826 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
76238774 CAAATACTTG
76238784 CAAACA-TAT-ACC-AGCCAATT
1 CAAACATTATAACCAAGCCAATT
76238804 CAAACATTATAACCAAGCCAATT
1 CAAACATTATAACCAAGCCAATT
76238827 TTAACATCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 3 0.15
22 3 0.15
23 8 0.40
ACGTcount: A:0.47, C:0.28, G:0.05, T:0.21
Consensus pattern (23 bp):
CAAACATTATAACCAAGCCAATT
Found at i:76244728 original size:23 final size:23
Alignment explanation
Indices: 76244712--76244837 Score: 127
Period size: 23 Copynumber: 5.6 Consensus size: 23
76244702 CAGCTTGTAT
*
76244712 GAGCTTACCGTTTCAGCTCTTAT
1 GAGCTTACCGTTTCAGCTCTTAG
*
76244735 GAGCTTACCG-TTCAGCTCTTCG
1 GAGCTTACCGTTTCAGCTCTTAG
* *
76244757 GAGCTTATCGTTTCAGTTCTTAG
1 GAGCTTACCGTTTCAGCTCTTAG
* *
76244780 GGGCTTACCGTTTCAACTC-TACG
1 GAGCTTACCGTTTCAGCTCTTA-G
*
76244803 GAGCTTACTG-TTCAGCTCAATT--
1 GAGCTTACCGTTTCAGCTC--TTAG
76244825 GAGCTTACCGTTT
1 GAGCTTACCGTTT
76244838 ATCGGCTCAA
Statistics
Matches: 84, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
22 37 0.44
23 46 0.55
25 1 0.01
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCTTAG
Found at i:76244769 original size:45 final size:44
Alignment explanation
Indices: 76244712--76244836 Score: 137
Period size: 45 Copynumber: 2.8 Consensus size: 44
76244702 CAGCTTGTAT
* *
76244712 GAGCTTACCGTTTCAGCTCTTATGAGCTTACCGTTCAGCTCTTCG
1 GAGCTTA-CGTTTCAGCTCTTATGAGCTTACCGTTCAACTCTACG
* * *
76244757 GAGCTTATCGTTTCAGTTCTTAGGGGCTTACCGTTTCAACTCTACG
1 GAGCTTA-CGTTTCAGCTCTTATGAGCTTACCG-TTCAACTCTACG
*
76244803 GAGCTTAC-TGTTCAGCTC-AATTGAGCTTACCGTT
1 GAGCTTACGT-TTCAGCTCTTA-TGAGCTTACCGTT
76244837 TATCGGCTCA
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
44 4 0.06
45 46 0.69
46 17 0.25
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.36
Consensus pattern (44 bp):
GAGCTTACGTTTCAGCTCTTATGAGCTTACCGTTCAACTCTACG
Found at i:76247263 original size:46 final size:46
Alignment explanation
Indices: 76247092--76247261 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
76247082 TGTAACACGC
* * * *
76247092 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
76247138 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
76247188 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
76247231 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
76247262 TTTGGAGGCC
Statistics
Matches: 104, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 58 0.56
47 28 0.27
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:76247286 original size:46 final size:45
Alignment explanation
Indices: 76247097--76247286 Score: 147
Period size: 46 Copynumber: 4.1 Consensus size: 45
76247087 CACGCCCATA
* * * *
76247097 AGTGAACTCGGACTCAACTCAACAAGCTCGG-GCGT-TCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGAGCCTAT-ACATCC-T
*
76247142 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGA-GCCTA--TACATC-CT
* * * *
76247192 --CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGAGCCTATACATCC-T
* * *
76247235 AAGTGAACTCGGACTCAACTCAACGAGTTTGGAGGCCCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGA-GCCTATACATCCT
76247282 AGTGA
1 AGTGA
76247287 CATGTCACTT
Statistics
Matches: 117, Mismatches: 15, Indels: 24
0.75 0.10 0.15
Matches are distributed among these distances:
42 1 0.01
43 6 0.05
45 2 0.02
46 63 0.54
47 29 0.25
48 9 0.08
50 5 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGAGCCTATACATCCT
Found at i:76249691 original size:15 final size:15
Alignment explanation
Indices: 76249662--76249711 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
76249652 CAAAGATAAC
*
76249662 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
76249676 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
76249691 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
76249706 AAGAAA
1 AAGAAA
76249712 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:76249720 original size:15 final size:15
Alignment explanation
Indices: 76249673--76249720 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
76249663 AGAAAACCGA
76249673 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
76249687 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
76249703 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
76249718 ATA
1 ATA
76249721 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:76252820 original size:46 final size:46
Alignment explanation
Indices: 76252650--76252825 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
76252640 TGTAACCCGC
** * *
76252650 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTTGGACATTTACAT
* * * *
76252696 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTG---GAC-ATTTACAT
* *
76252746 CTC-T---CGAACTCGGACTCAACTCAACGAGTTTGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTTGGACATTTACAT
76252789 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGA
76252826 TGCCCAAACA
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 2 0.02
45 1 0.01
46 60 0.56
47 25 0.23
48 1 0.01
49 1 0.01
50 7 0.07
51 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGACATTTACAT
Found at i:76257332 original size:16 final size:17
Alignment explanation
Indices: 76257303--76257346 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
76257293 ACCGATAAAA
* *
76257303 TATTTTTTTATTTTTTG
1 TATTTTCTTATTTTCTG
76257320 TATTTTCTT-TTTTCTG
1 TATTTTCTTATTTTCTG
*
76257336 TATTTTTTTAT
1 TATTTTCTTAT
76257347 CACTTTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 14 0.61
17 9 0.39
ACGTcount: A:0.11, C:0.05, G:0.05, T:0.80
Consensus pattern (17 bp):
TATTTTCTTATTTTCTG
Found at i:76268255 original size:47 final size:47
Alignment explanation
Indices: 76268201--76268438 Score: 359
Period size: 47 Copynumber: 5.1 Consensus size: 47
76268191 GATTTTATGA
** * * * *
76268201 GATGAATGTGAATGTGTATATATGAGATAAGGCCTAATGGCGAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
76268248 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATTT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
76268295 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
76268342 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* ** *
76268389 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCTAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
76268436 GAT
1 GAT
76268439 AAACGTGGAA
Statistics
Matches: 177, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 177 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:76268341 original size:22 final size:22
Alignment explanation
Indices: 76268316--76268391 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
76268306 ACATGCATAT
76268316 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
76268338 ATGTGATGAATG-TGAACAT-G-CA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
76268360 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
76268385 ATGTGAT
1 ATGTGAT
76268392 GAATGTGAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:76268350 original size:141 final size:141
Alignment explanation
Indices: 76268201--76268508 Score: 379
Period size: 141 Copynumber: 2.2 Consensus size: 141
76268191 GATTTTATGA
* *
76268201 GATGAATGTGAATGTGTATATATGAGATAAGGCCTAATGGCGAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
* * * * *
76268266 TATGTGTGATAAGGCCGAATGGCCAATTTGATGAATGT-GAACATGCATATATGT-GATAAGGCC
66 TATGTGTGATAAGGCAGAATGGCCAATGTGATAAACGTGGAA-ATGCATATATGTGGAGAA-GCC
76268329 GAATGGCCAATGT
129 GAATGGCCAATGT
** * * *
76268342 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
* * * * *
76268407 TATGTGTGATAAGGTAGAATGGCTAATGTGATAAACGTGGAAGTGTATATATGTGGCGAAGCCGA
66 TATGTGTGATAAGGCAGAATGGCCAATGTGATAAACGTGGAAATGCATATATGTGGAGAAGCCGA
*
76268472 ATGGCTAATGT
131 ATGGCCAATGT
76268483 GA-GATATGTATGAGATGTGTATATAT
1 GATGA-ATG--TGA-ATGTGTATATAT
76268509 ATATATTGTG
Statistics
Matches: 139, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
140 2 0.01
141 120 0.86
142 6 0.04
143 3 0.02
144 8 0.06
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (141 bp):
GATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
TATGTGTGATAAGGCAGAATGGCCAATGTGATAAACGTGGAAATGCATATATGTGGAGAAGCCGA
ATGGCCAATGT
Found at i:76268412 original size:23 final size:23
Alignment explanation
Indices: 76268338--76268412 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 23
76268328 CGAATGGCCA
76268338 ATGTGATGAATGTGAACATGCAT
1 ATGTGATGAATGTGAACATGCAT
* *
76268361 ATGTG-TGATAAG-G-CCGAATGGCCA-
1 ATGTGATGA-ATGTGAAC--AT-G-CAT
76268385 ATGTGATGAATGTGAACATGCAT
1 ATGTGATGAATGTGAACATGCAT
76268408 ATGTG
1 ATGTG
76268413 TGATAAGGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 18
0.64 0.07 0.30
Matches are distributed among these distances:
21 1 0.03
22 6 0.15
23 15 0.38
24 10 0.26
25 6 0.15
26 1 0.03
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCAT
Found at i:76268471 original size:94 final size:94
Alignment explanation
Indices: 76268201--76268484 Score: 320
Period size: 94 Copynumber: 3.0 Consensus size: 94
76268191 GATTTTATGA
** * * ** * * *
76268201 GATGAATGTGAATGTGTATATATGAGATAAGGCCTAATGGCGAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATAAACGTGAACATGCA
* * *
76268266 TATGTGTGATAAGGCCGAATGGCCAATTT
66 TATATGTGAGAAGGCCGAATGGCCAATGT
* * *
76268295 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATAAACGTGAACATGCA
* *
76268360 TATGTGTGATAAGGCCGAATGGCCAATGT
66 TATATGTGAGAAGGCCGAATGGCCAATGT
* * * * *
76268389 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCTAATGTGATAAACGTGGAA-GTGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATAAACGT-GAACATGC
* *
76268453 ATATATGTGGCGAA-GCCGAATGGCTAATGT
65 ATATATGT-GAGAAGGCCGAATGGCCAATGT
76268483 GA
1 GA
76268485 GATATGTATG
Statistics
Matches: 169, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
94 163 0.96
95 6 0.04
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (94 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATAAACGTGAACATGCA
TATATGTGAGAAGGCCGAATGGCCAATGT
Found at i:76272813 original size:20 final size:20
Alignment explanation
Indices: 76272788--76272827 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
76272778 TGATTAAGTA
76272788 AAACCATGACTAAGTTATTC
1 AAACCATGACTAAGTTATTC
76272808 AAACCATGACTAAGTTATTC
1 AAACCATGACTAAGTTATTC
76272828 TTGCATTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (20 bp):
AAACCATGACTAAGTTATTC
Found at i:76277996 original size:42 final size:41
Alignment explanation
Indices: 76277940--76278041 Score: 141
Period size: 42 Copynumber: 2.5 Consensus size: 41
76277930 TGCCGATAGC
* *
76277940 CCAGATATGGTCTTACACGAAATTTCATAACGGTGCCACAT
1 CCAGATATGGTCTTACACGAAATCTCATAACGATGCCACAT
* * * *
76277981 CTTAGATGTGGTCTTACACGAAATCTCATATCGATGCCATAT
1 C-CAGATATGGTCTTACACGAAATCTCATAACGATGCCACAT
76278023 CCAGATATGGTCTTACACG
1 CCAGATATGGTCTTACACG
76278042 TAGACTTAGT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 17 0.33
42 35 0.67
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (41 bp):
CCAGATATGGTCTTACACGAAATCTCATAACGATGCCACAT
Found at i:76279261 original size:21 final size:19
Alignment explanation
Indices: 76279235--76279273 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
76279225 ATGACCCCTA
*
76279235 TTTAGTGAAAAGTTTTCTAAG
1 TTTAGT-AAAA-TTTCCTAAG
76279256 TTTAGTAAAATTTCCTAA
1 TTTAGTAAAATTTCCTAA
76279274 AGATTTTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 4 0.24
21 6 0.35
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.44
Consensus pattern (19 bp):
TTTAGTAAAATTTCCTAAG
Found at i:76286831 original size:48 final size:47
Alignment explanation
Indices: 76286769--76287041 Score: 173
Period size: 48 Copynumber: 5.7 Consensus size: 47
76286759 AAAATGGTAA
* *
76286769 AATGTCGATGCCATGTCCAAGACATGGTCTTACATTGATACATATAAC
1 AATGCCGATGCCATGTCCAA-ACATGGTCTTACATTGCTACATATAAC
* * * **
76286817 AATGCTGATGCCATGTTCCAAACAAGGTCTTACACTGGCT-C-TCATATT
1 AATGCCGATGCCATG-TCCAAACATGGTCTTACA-TTGCTACAT-ATAAC
* * * * * **
76286865 GAGGCCGATGCCATGTCCCAGA-ATGGCCTTACACTGGCT-CGCATAAC
1 AATGCCGATGCCATGT-CCAAACATGGTCTTACA-TTGCTACATATAAC
* * *
76286912 AATGCCAATGCCATGTTCGAAACATGGTCTTACATTGGCTCACATATACC
1 AATGCCGATGCCATG-TCCAAACATGGTCTTACATT-GCT-ACATATAAC
** * *
76286962 GGTGCCGATGCCATGTCCCAAACATGGTCTTACA---CTAACACATATC
1 AATGCCGATGCCATGT-CCAAACATGGTCTTACATTGCT-ACATATAAC
** *
76287008 AGGGCCGATGCCATGTCCTAGACATGGTCTTACA
1 AATGCCGATGCCATGTCC-AAACATGGTCTTACA
76287042 CTGGCTCTCT
Statistics
Matches: 177, Mismatches: 36, Indels: 26
0.74 0.15 0.11
Matches are distributed among these distances:
45 2 0.01
46 37 0.21
47 37 0.21
48 59 0.33
49 9 0.05
50 33 0.19
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (47 bp):
AATGCCGATGCCATGTCCAAACATGGTCTTACATTGCTACATATAAC
Found at i:76286941 original size:95 final size:95
Alignment explanation
Indices: 76286774--76287050 Score: 276
Period size: 95 Copynumber: 2.9 Consensus size: 95
76286764 GGTAAAATGT
* * * *
76286774 CGATGCCATGT-CCAAGACATGGTCTTACATTGATACATATAACAATGCTGATGCCATGTTCCAA
1 CGATGCCATGTCCCAA-ACATGGCCTTACACT-A-ACACATAACAATGCCGATGCCATGTTCCAA
* *
76286838 ACAAGGTCTTACACTGGCTCTCATAT-TGAG-GC
63 ACATGGTCTTACACTGGCTCTCATATACG-GTGC
* ** * * *
76286870 CGATGCCATGTCCCAGA-ATGGCCTTACACTGGCTCGCATAACAATGCCAATGCCATGTTCGAAA
1 CGATGCCATGTCCCAAACATGGCCTTACACT--AACACATAACAATGCCGATGCCATGTTCCAAA
* *
76286934 CATGGTCTTACATTGGCTCACATATACCGGTGC
64 CATGGTCTTACACTGGCTCTCATATA-CGGTGC
* * ** *
76286967 CGATGCCATGTCCCAAACATGGTCTTACACTAACACATATCAGGGCCGATGCCATG-TCCTAGAC
1 CGATGCCATGTCCCAAACATGGCCTTACACTAACACATAACAATGCCGATGCCATGTTCC-AAAC
76287031 ATGGTCTTACACTGGCTCTC
65 ATGGTCTTACACTGGCTCTC
76287051 TTATCGCCAT
Statistics
Matches: 147, Mismatches: 27, Indels: 14
0.78 0.14 0.07
Matches are distributed among these distances:
95 60 0.41
96 53 0.36
97 22 0.15
98 12 0.08
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (95 bp):
CGATGCCATGTCCCAAACATGGCCTTACACTAACACATAACAATGCCGATGCCATGTTCCAAACA
TGGTCTTACACTGGCTCTCATATACGGTGC
Found at i:76293431 original size:48 final size:48
Alignment explanation
Indices: 76293357--76293623 Score: 198
Period size: 48 Copynumber: 5.6 Consensus size: 48
76293347 AACATCGGTA
*
76293357 TCGATGCCATGTCCCAGACATCGTCTTACACTGACACATATAACAATG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGACACATATAACAATG
* * * ** *** *
76293405 TCGATGCCATATTCCCA-ACATGGTCTTGCACTGACTCGCATATTGAGG
1 TCGATGCCAT-GTCCCAGACATGGTCTTACACTGACACATATAACAATG
* * * * * * **
76293453 ACAATGCCATGTCCTAGAAATGGTCTTACACTGGCTCGCATAACAATG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGACACATATAACAATG
* * * * * **
76293501 TCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCGCATATACCGGTG
1 TCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATATAACAATG
* * *
76293551 TCGATGCCATGTCCCAGACATGGTTTTACACTAACACATAT--CAAGG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGACACATATAACAATG
* * **
76293597 CCAATTTCATGTCCCAGACATGGTCTT
1 TCGATGCCATGTCCCAGACATGGTCTT
76293624 TTCCGTTAAT
Statistics
Matches: 167, Mismatches: 48, Indels: 10
0.74 0.21 0.04
Matches are distributed among these distances:
46 24 0.14
47 4 0.02
48 96 0.57
49 6 0.04
50 37 0.22
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (48 bp):
TCGATGCCATGTCCCAGACATGGTCTTACACTGACACATATAACAATG
Found at i:76293608 original size:96 final size:95
Alignment explanation
Indices: 76293309--76293623 Score: 278
Period size: 96 Copynumber: 3.3 Consensus size: 95
76293299 GTAAAATGCT
* * * * * *
76293309 GATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCAAACATCGGTATCGATGCCATGTCCCAG
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCGCATATA-CGGTGTCGATGCCATGTCCCAG
* *
76293374 ACATCGTCTTACACTGACACATATAACAATGTC
65 ACATGGTCTTACACTAACACATAT--CAATGTC
* * * * * *
76293407 GATGCCATATTCCC-AACATGGTCTTGCACT-GACTCGCATAT-TGAG-GACAATGCCATGTCCT
1 GATGCCAT-GTCCCAAACATGGTCTTACACTAG-CTCGCATATACG-GTGTCGATGCCATGTCCC
* ** * *
76293468 AGAAATGGTCTTACACTGGCTCGCATAACAATGTC
63 AGACATGGTCTTACACT--AACACATATCAATGTC
*
76293503 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCGCATATACCGGTGTCGATGCCATGTCCCAG
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCGCATATA-CGGTGTCGATGCCATGTCCCAG
* * *
76293568 ACATGGTTTTACACTAACACATATCAAGGCC
65 ACATGGTCTTACACTAACACATATCAATGTC
* ** *
76293599 AATTTCATGTCCCAGACATGGTCTT
1 GATGCCATGTCCCAAACATGGTCTT
76293624 TTCCGTTAAT
Statistics
Matches: 169, Mismatches: 38, Indels: 22
0.74 0.17 0.10
Matches are distributed among these distances:
95 3 0.02
96 97 0.57
97 4 0.02
98 61 0.36
99 4 0.02
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (95 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCGCATATACGGTGTCGATGCCATGTCCCAGA
CATGGTCTTACACTAACACATATCAATGTC
Found at i:76298577 original size:30 final size:30
Alignment explanation
Indices: 76298536--76298596 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
76298526 AAAAAATGCA
76298536 TGAATAGTAAATCATCTATCTACGGCATAC
1 TGAATAGTAAATCATCTATCTACGGCATAC
* *
76298566 TGAATATTAAATCATCTATCTACGGCGTAC
1 TGAATAGTAAATCATCTATCTACGGCATAC
76298596 T
1 T
76298597 ATATTTACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (30 bp):
TGAATAGTAAATCATCTATCTACGGCATAC
Found at i:76302179 original size:20 final size:18
Alignment explanation
Indices: 76302154--76302204 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
76302144 AAGGGCTATT
76302154 TTGTAAAGTTGTAAAATAA
1 TTGTAAA-TTGTAAAATAA
*
76302173 GTTGTAAATGTGTGAAATAA
1 -TTGTAAAT-TGTAAAATAA
76302193 TTG-AAATTGTAA
1 TTGTAAATTGTAA
76302205 GTTGCTATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 4 0.14
18 4 0.14
19 4 0.14
20 16 0.57
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (18 bp):
TTGTAAATTGTAAAATAA
Found at i:76302939 original size:48 final size:43
Alignment explanation
Indices: 76302857--76303015 Score: 156
Period size: 44 Copynumber: 3.5 Consensus size: 43
76302847 ATGTGTGCTG
* * *
76302857 GTGTAAGACATGTCTAGGACATGCATCAGTCTCGAGATATGCAAGCCA
1 GTGTAAGACCTGTCTAGGACATGCATC-GGCTC--GACATG--AGCCA
* *
76302905 GTGTAAGACCTGTCTAGGACATCGCATCGGCTCGACATGTGTCA
1 GTGTAAGACCTGTCTAGGACAT-GCATCGGCTCGACATGAGCCA
* * * *
76302949 GTGTAAGACCTGTCTGGGACATGACATCGGCTTGACATGTGTCA
1 GTGTAAGACCTGTCTAGGACATG-CATCGGCTCGACATGAGCCA
* *
76302993 ATGTAAGACCTGTCTGGGACATG
1 GTGTAAGACCTGTCTAGGACATG
76303016 GTATTGACAC
Statistics
Matches: 101, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
43 1 0.01
44 65 0.64
46 5 0.05
48 25 0.25
49 5 0.05
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (43 bp):
GTGTAAGACCTGTCTAGGACATGCATCGGCTCGACATGAGCCA
Found at i:76302963 original size:44 final size:44
Alignment explanation
Indices: 76302903--76303015 Score: 183
Period size: 44 Copynumber: 2.6 Consensus size: 44
76302893 ATATGCAAGC
*
76302903 CAGTGTAAGACCTGTCTAGGACATCG-CATCGGCTCGACATGTGT
1 CAGTGTAAGACCTGTCTGGGACAT-GACATCGGCTCGACATGTGT
*
76302947 CAGTGTAAGACCTGTCTGGGACATGACATCGGCTTGACATGTGT
1 CAGTGTAAGACCTGTCTGGGACATGACATCGGCTCGACATGTGT
*
76302991 CAATGTAAGACCTGTCTGGGACATG
1 CAGTGTAAGACCTGTCTGGGACATG
76303016 GTATTGACAC
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
43 1 0.02
44 64 0.98
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (44 bp):
CAGTGTAAGACCTGTCTGGGACATGACATCGGCTCGACATGTGT
Found at i:76307331 original size:19 final size:19
Alignment explanation
Indices: 76307295--76307333 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
76307285 TTTTCATCAT
* *
76307295 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
76307314 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
76307333 A
1 A
76307334 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:76307985 original size:28 final size:28
Alignment explanation
Indices: 76307938--76308002 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
76307928 AAATTAACCC
*
76307938 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
76307966 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
76307994 TAGGGGTAT
1 TAGGGGTAT
76308003 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:76315003 original size:19 final size:19
Alignment explanation
Indices: 76314967--76315005 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
76314957 TTTTCATCAT
* *
76314967 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
76314986 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
76315005 A
1 A
76315006 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:76315500 original size:29 final size:28
Alignment explanation
Indices: 76315467--76315529 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
76315457 GTGACAGAGT
*
76315467 CACCAGATACAGAGATTTTGTGGCAGT-GC
1 CACCAGA-ACAGAGAATTTGTGGCA-TAGC
* *
76315496 CACCAGAATAGATAATTTGTGGCATAGC
1 CACCAGAACAGAGAATTTGTGGCATAGC
76315524 CACCAG
1 CACCAG
76315530 GACGCTTCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 1 0.03
28 22 0.73
29 7 0.23
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (28 bp):
CACCAGAACAGAGAATTTGTGGCATAGC
Found at i:76315682 original size:28 final size:28
Alignment explanation
Indices: 76315638--76315699 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
76315628 TTAACCCTAA
*
76315638 GGGTATAAAGGTCATTTAGCATACATAG
1 GGGTATAAAGGTAATTTAGCATACATAG
* *
76315666 GGGTATAATGGTAATTTTGCATACATAG
1 GGGTATAAAGGTAATTTAGCATACATAG
76315694 GGGTAT
1 GGGTAT
76315700 TCTAGTAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.08, G:0.27, T:0.32
Consensus pattern (28 bp):
GGGTATAAAGGTAATTTAGCATACATAG
Found at i:76320558 original size:37 final size:37
Alignment explanation
Indices: 76320508--76320586 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
76320498 TTATTACGAA
* *
76320508 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
76320545 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
76320582 GTCTT
1 GTCTT
76320587 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:76320783 original size:47 final size:47
Alignment explanation
Indices: 76320705--76321148 Score: 717
Period size: 47 Copynumber: 9.4 Consensus size: 47
76320695 CCCTTCGGGA
* * * * * * **
76320705 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCCGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76320752 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76320799 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76320846 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76320893 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76320940 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76320987 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76321034 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76321083 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76321130 CTTATCACATATATACACT
1 CTTATCACATATATACACT
76321149 GTCTTGGCTG
Statistics
Matches: 374, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 328 0.88
49 46 0.12
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76345698 original size:40 final size:40
Alignment explanation
Indices: 76345615--76345800 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
76345605 TTGAATGATG
* * * *
76345615 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
76345655 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76345695 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76345735 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
76345776 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76345801 AACGAGGAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76345818 original size:80 final size:79
Alignment explanation
Indices: 76345615--76345833 Score: 221
Period size: 80 Copynumber: 2.7 Consensus size: 79
76345605 TTGAATGATG
** * * * *
76345615 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAA-ATCCCGAAGGCAT
76345678 TTGTGCGAGTTACTAAA
63 TTGTGCGAGTTACTAAA
* ** * *
76345695 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
76345760 GTGCGAGTTACTATAA
65 GTGCGAGTTACTA-AA
* * * *
76345776 -CTGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
76345834 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
79 16 0.14
80 91 0.77
81 11 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:76347815 original size:34 final size:34
Alignment explanation
Indices: 76347777--76347844 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
76347767 TAACTTGATC
*
76347777 TAAATAATCAAATTCAATCCATTTAGTATTCATT
1 TAAATAATCAAATTCAATCCATTTAGCATTCATT
76347811 TAAATAATCAAATTCAATCCATTTAGCATTCATT
1 TAAATAATCAAATTCAATCCATTTAGCATTCATT
76347845 CTATTTGATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.41, C:0.16, G:0.03, T:0.40
Consensus pattern (34 bp):
TAAATAATCAAATTCAATCCATTTAGCATTCATT
Found at i:76354093 original size:40 final size:40
Alignment explanation
Indices: 76354056--76354240 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
76354046 GCTACTCGTT
*
76354056 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
76354096 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
76354136 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
76354175 CAAATGCATTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
76354216 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76354241 CATCATTCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:76354167 original size:79 final size:82
Alignment explanation
Indices: 76354056--76354240 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
76354046 GCTACTCGTT
* * *
76354056 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCATTC-GGATCTTAACCC
* *
76354119 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
76354136 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCATTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCATTCGGATCTTAACCCG
* *
76354199 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
76354216 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76354241 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCATTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:76364696 original size:115 final size:115
Alignment explanation
Indices: 76364490--76364837 Score: 588
Period size: 115 Copynumber: 3.0 Consensus size: 115
76364480 TTTCCACCAC
* *
76364490 CCATTTCAAACATGTACCTACAAGCCATTTGCACCCTCGTTCAAAGCATCAAAACATACCAAAAC
1 CCATTTCAAGCATGTACCTACAAGCCATTTGCACCCTTGTTCAAAGCATCAAAACATACCAAAAC
*
76364555 ATGCATGAAATGACCAATTCACTATACCATTATTCCATCCGACCAATATG
66 ATGCATGAAATGACCAATTCACTATACCATTATTCCATCCAACCAATATG
** * * * * *
76364605 CCATTTGGAGCATGTACCTACAAGCTATTTGCACCATTTTTCAAAGTATTAAAACATACCAAAAC
1 CCATTTCAAGCATGTACCTACAAGCCATTTGCACCCTTGTTCAAAGCATCAAAACATACCAAAAC
*
76364670 ATGCATGAAATGACCAATTCAGTATACCATTATTCCATCCAACCAATATG
66 ATGCATGAAATGACCAATTCACTATACCATTATTCCATCCAACCAATATG
*
76364720 CCATTTCAAGCATGTACCTATAAGCCATTTGCACCCTTGTTCAAAGCATCAAAACATACCAAAAC
1 CCATTTCAAGCATGTACCTACAAGCCATTTGCACCCTTGTTCAAAGCATCAAAACATACCAAAAC
76364785 ATGCATGAAATGACCAATTCACTATACCATTATTCCATCCAACCAATATG
66 ATGCATGAAATGACCAATTCACTATACCATTATTCCATCCAACCAATATG
76364835 CCA
1 CCA
76364838 ATAAGGAACC
Statistics
Matches: 213, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
115 213 1.00
ACGTcount: A:0.37, C:0.27, G:0.09, T:0.26
Consensus pattern (115 bp):
CCATTTCAAGCATGTACCTACAAGCCATTTGCACCCTTGTTCAAAGCATCAAAACATACCAAAAC
ATGCATGAAATGACCAATTCACTATACCATTATTCCATCCAACCAATATG
Found at i:76377206 original size:18 final size:18
Alignment explanation
Indices: 76377176--76377243 Score: 73
Period size: 18 Copynumber: 3.6 Consensus size: 18
76377166 CAAACATATT
76377176 TCTTTTCTTCTTTCTTCTC
1 TCTTTT-TTCTTTCTTCTC
* *
76377195 TCTTTTTTCTTTTTTTTC
1 TCTTTTTTCTTTCTTCTC
76377213 TCCTTTCTTTCTTTCTTCTC
1 T-CTTT-TTTCTTTCTTCTC
* *
76377233 CCTCTTTTCTT
1 TCTTTTTTCTT
76377244 CTTTACTGCT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
18 17 0.41
19 13 0.32
20 11 0.27
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (18 bp):
TCTTTTTTCTTTCTTCTC
Found at i:76387144 original size:27 final size:26
Alignment explanation
Indices: 76387096--76387147 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
76387086 GCGAGGCTGC
*
76387096 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
76387122 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
76387148 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:76387903 original size:26 final size:27
Alignment explanation
Indices: 76387858--76387965 Score: 132
Period size: 26 Copynumber: 4.1 Consensus size: 27
76387848 GTGATTCTGT
*
76387858 AAATCAGGGGTACTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* *
76387885 AAGT-TGAGGGT-TTTTGGTAATTTTAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
76387911 AAATCAGGGGTATTTTGGTAA-TTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * *
76387937 AAACCAGGGGTATTTTAGTAATTCTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
76387964 AA
1 AA
76387966 CTTATCCACT
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
26 46 0.67
27 23 0.33
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:76387929 original size:53 final size:54
Alignment explanation
Indices: 76387808--76387939 Score: 151
Period size: 54 Copynumber: 2.5 Consensus size: 54
76387798 TCTTGCCCTA
* * * **
76387808 CAGGGGTATTTCGGTAATTTTATAAATTGAGGGTAAAATGGTGATTCTGTAAAT
1 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTAAAATGGTAATTCTACAAAT
* * *** *
76387862 CAGGGGTACTTTGGTAATTTTACAAGTTGAGGGT-TTTTGGTAATTTTACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTAAAATGGTAATTCTACAAAT
76387915 CAGGGGTATTTTGGTAA-TTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
76387940 CCAGGGGTAT
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
52 7 0.11
53 28 0.43
54 30 0.46
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.39
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTAAAATGGTAATTCTACAAAT
Found at i:76387958 original size:53 final size:53
Alignment explanation
Indices: 76387858--76387965 Score: 130
Period size: 53 Copynumber: 2.0 Consensus size: 53
76387848 GTGATTCTGT
*** * *
76387858 AAATCAGGGGTACTTTGGTAATTTTACAAGTTGAGGGTTTTTGGTAATTTTAC
1 AAATCAGGGGTACTTTGGTAATTTTACAACCAGAGGGTTTTTAGTAATTCTAC
*
76387911 AAATCAGGGGTATTTTGGTAA-TTTACAAACCAG-GGGTATTTTAGTAATTCTAC
1 AAATCAGGGGTACTTTGGTAATTTTAC-AACCAGAGGGT-TTTTAGTAATTCTAC
76387964 AA
1 AA
76387966 CTTATCCACT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
52 9 0.19
53 38 0.81
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (53 bp):
AAATCAGGGGTACTTTGGTAATTTTACAACCAGAGGGTTTTTAGTAATTCTAC
Found at i:76392421 original size:37 final size:37
Alignment explanation
Indices: 76392362--76392507 Score: 211
Period size: 37 Copynumber: 3.9 Consensus size: 37
76392352 AGCTCAGACG
* *
76392362 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
76392399 AAATCTCCATACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
76392436 TACTCTCCACACATAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
** *
76392473 TGATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
76392508 ATATATTTCC
Statistics
Matches: 98, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:76392722 original size:47 final size:47
Alignment explanation
Indices: 76392670--76392949 Score: 479
Period size: 47 Copynumber: 6.0 Consensus size: 47
76392660 TTTCACACTA
* * * *
76392670 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCAGCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
76392717 GCCATTCGGCCTTATCACACATATGCATGCTCACGTTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
76392764 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
76392811 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
76392858 GCCATTCGGCCTTATCACATATACGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
76392905 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
76392950 AAAATCCTAA
Statistics
Matches: 219, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 219 1.00
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:76398149 original size:27 final size:26
Alignment explanation
Indices: 76398101--76398152 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
76398091 GCGAGGCTGC
*
76398101 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
76398127 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
76398153 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:76398878 original size:27 final size:27
Alignment explanation
Indices: 76398808--76398936 Score: 84
Period size: 27 Copynumber: 4.8 Consensus size: 27
76398798 TCCTACCCTA
* * *
76398808 CAGGGGTATTTCGATAATTTTGTAAAT
1 CAGGGGTATTTTGGTAATTCTGTAAAT
* *** *
76398835 CAAGGGTAAAATAGTAATTCTGTAAAT
1 CAGGGGTATTTTGGTAATTCTGTAAAT
*
76398862 CAGGGGTACTTTGGTAATT-T-TACAAGT
1 CAGGGGTATTTTGGTAATTCTGTA-AA-T
* ** *
76398889 C-GAGGGTATTTTGGTAATTTTACAAAC
1 CAG-GGGTATTTTGGTAATTCTGTAAAT
*
76398916 CAGGGGTATTTTAGTAATTCT
1 CAGGGGTATTTTGGTAATTCT
76398937 ACAACTTATC
Statistics
Matches: 78, Mismatches: 18, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
25 2 0.03
26 4 0.05
27 67 0.86
28 4 0.05
29 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.37
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTCTGTAAAT
Found at i:76398939 original size:27 final size:27
Alignment explanation
Indices: 76398846--76398940 Score: 93
Period size: 27 Copynumber: 3.5 Consensus size: 27
76398836 AAGGGTAAAA
** *
76398846 TAGTAATTCTGTAAATCAGGGGTACTT
1 TAGTAATTCTACAAATCAGGGGTATTT
* * *
76398873 TGGTAATTTTACAAGTC-GAGGGTATTT
1 TAGTAATTCTACAAATCAG-GGGTATTT
* * *
76398900 TGGTAATTTTACAAACCAGGGGTATTT
1 TAGTAATTCTACAAATCAGGGGTATTT
76398927 TAGTAATTCTACAA
1 TAGTAATTCTACAA
76398941 CTTATCCACT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 1 0.02
27 54 0.96
28 1 0.02
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
TAGTAATTCTACAAATCAGGGGTATTT
Found at i:76400780 original size:37 final size:37
Alignment explanation
Indices: 76400730--76400808 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
76400720 TTATTACGAA
* * *
76400730 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
76400767 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
76400804 GTCTT
1 GTCTT
76400809 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:76401086 original size:47 final size:47
Alignment explanation
Indices: 76400926--76401291 Score: 642
Period size: 47 Copynumber: 7.7 Consensus size: 47
76400916 GCCCTTCGGG
*
76400926 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
76400976 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
76401025 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
76401072 ACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
76401119 ACTTTCACATTCTTCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
76401166 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
76401213 ACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
76401260 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
76401292 ATACTATCAT
Statistics
Matches: 309, Mismatches: 7, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
47 222 0.72
49 83 0.27
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:76406305 original size:16 final size:16
Alignment explanation
Indices: 76406284--76406334 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
76406274 ACATCCCAAC
*
76406284 TTTCAACCTTTCGGCT
1 TTTCAACTTTTCGGCT
* * *
76406300 TTTCAAATTTTTGACT
1 TTTCAACTTTTCGGCT
*
76406316 TTTCAGCTTTTCGGCT
1 TTTCAACTTTTCGGCT
76406332 TTT
1 TTT
76406335 ACTATTACAC
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.14, C:0.22, G:0.12, T:0.53
Consensus pattern (16 bp):
TTTCAACTTTTCGGCT
Found at i:76426603 original size:41 final size:41
Alignment explanation
Indices: 76426433--76426603 Score: 143
Period size: 41 Copynumber: 4.2 Consensus size: 41
76426423 GATCTAAATC
* *
76426433 CGAGCTTGGTCTCAAAGGGCTTTTGAGCCAGTGCTAATAAC
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAAT
* * * * * *
76426474 CAAACTTAGTTTCGAAGGGCTTTAGAGCCAGTG-TCATAAT
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAAT
* * * * *
76426514 CG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGTGGT-CTAAT
1 CGAG-CTTGGTCT-CGAAGGGCTTTTGAGCCAGTGCTAATAAT
* *
76426554 CCGAGCTTGGTCTCGAATGGCTTTTGAGCCAGTGCTAAGAAT
1 -CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAAT
*
76426596 CGGGCTTG
1 CGAGCTTG
76426604 ATTCCGAAGG
Statistics
Matches: 102, Mismatches: 21, Indels: 14
0.74 0.15 0.10
Matches are distributed among these distances:
39 1 0.01
40 35 0.34
41 61 0.60
42 5 0.05
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (41 bp):
CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAAT
Found at i:76428631 original size:872 final size:872
Alignment explanation
Indices: 76426947--76429563 Score: 5126
Period size: 872 Copynumber: 3.0 Consensus size: 872
76426937 ATTCGGTTAT
76426947 GGATTGGATTTAGCTGGATAAATTGGTTTCACCTTTGTGATATTAATGATAAAAGTGATATCTCG
1 GGATTGGATTTAGCTGGATAAATTGGTTTCACCTTTGTGATATTAATGATAAAAGTGATATCTCG
76427012 GTTATGTTTCTATTCGGCCAAGGGATGAAACAAACAAACTTGATATTATTATGCCATTCTTTTAA
66 GTTATGTTTCTATTCGGCCAAGGGATGAAACAAACAAACTTGATATTATTATGCCATTCTTTTAA
*
76427077 ATGATTTCATCACTTAAAACTTACTGAGCATCAAAATGCTTATTATGTTGCTTTAATTCTCTGTT
131 ATGATTTCATTACTTAAAACTTACTGAGCATCAAAATGCTTATTATGTTGCTTTAATTCTCTGTT
*
76427142 TTATAGAATTTGTTCGTCAGCTGTCGGACTTGGGAGTGTCAAAGTCGAAGTCATCCACACTATCT
196 TTATAGAATTTGTTCGTCAGCTATCGGACTTGGGAGTGTCAAAGTCGAAGTCATCCACACTATCT
76427207 AAGCCACTTTTTGGTACTCTTCAGTTGAACTTGATAATGGCATGTATAGGGCTGACCCTTGATGT
261 AAGCCACTTTTTGGTACTCTTCAGTTGAACTTGATAATGGCATGTATAGGGCTGACCCTTGATGT
76427272 TAATTAAGTATCTTTTGGTAATGTATATTCGTATAGCCATGCGAAAATGGCTTGTTTATTTTGAG
326 TAATTAAGTATCTTTTGGTAATGTATATTCGTATAGCCATGCGAAAATGGCTTGTTTATTTTGAG
*
76427337 TATAACATTACGGTCATTTTGTATATATGGTCTTATGATATGGTTATTAAGTGGTGTGGAAATGT
391 TATAACATTATGGTCATTTTGTATATATGGTCTTATGATATGGTTATTAAGTGGTGTGGAAATGT
76427402 TTGGTAATGATTAGCCATTGGAATGGCCAATCATGGTCCTATTGGTGCTACGTACGTCATGGCTA
456 TTGGTAATGATTAGCCATTGGAATGGCCAATCATGGTCCTATTGGTGCTACGTACGTCATGGCTA
76427467 ATCGTGATTATACTTGAAAATAATGTATGTCAATTTACTAATTGATTCATGGAAAATTTGAAATA
521 ATCGTGATTATACTTGAAAATAATGTATGTCAATTTACTAATTGATTCATGGAAAATTTGAAATA
76427532 GGTAAAATTTACCTTAAAAGAGATGCTGACAGCAGCAGTGATGTGAATTTGAAAAATCACTAAAA
586 GGTAAAATTTACCTTAAAAGAGATGCTGACAGCAGCAGTGATGTGAATTTGAAAAATCACTAAAA
*
76427597 ATAGTAAGAATGGAATTAAATAGTGAATAAATTATATAATTGAAGCTTGATGAGTCTATTTTCAT
651 ATAGTAGGAATGGAATTAAATAGTGAATAAATTATATAATTGAAGCTTGATGAGTCTATTTTCAT
76427662 ATGAAAGAAACGAAATGACCATATGAGCCGTATTTTATGAGATGTTTAAGTTTTCATGAAACAGG
716 ATGAAAGAAACGAAATGACCATATGAGCCGTATTTTATGAGATGTTTAAGTTTTCATGAAACAGG
76427727 GCCAGAGCGTTTTCTGGATCCCCTATGTTCTGATTTTGAAAATTTACCATAAATTAACCAGAGAC
781 GCCAGAGCGTTTTCTGGATCCCCTATGTTCTGATTTTGAAAATTTACCATAAATTAACCAGAGAC
76427792 AATTAGAAGTCATGATTTATATGTACA
846 AATTAGAAGTCATGATTTATATGTACA
76427819 GGATTGGATTTAGCTGGATAAATTGGTTTCACCTTTGTGATATTAATGATAAAAGTGATATCTCG
1 GGATTGGATTTAGCTGGATAAATTGGTTTCACCTTTGTGATATTAATGATAAAAGTGATATCTCG
*
76427884 GTTATGTTTCTATTCGGCCAAGGGATGAAACAAACAAACTTGATATTATTGTGCCATTCTTTTAA
66 GTTATGTTTCTATTCGGCCAAGGGATGAAACAAACAAACTTGATATTATTATGCCATTCTTTTAA
76427949 ATGATTTCATTACTTAAAACTTACTGAGCATCAAAATGCTTATTATGTTGCTTTAATTCTCTGTT
131 ATGATTTCATTACTTAAAACTTACTGAGCATCAAAATGCTTATTATGTTGCTTTAATTCTCTGTT
76428014 TTATAGAATTTGTTCGTCAGCTATCGGACTTGGGAGTGTCAAAGTCGAAGTCATCCACACTATCT
196 TTATAGAATTTGTTCGTCAGCTATCGGACTTGGGAGTGTCAAAGTCGAAGTCATCCACACTATCT
76428079 AAGCCACTTTTTGGTACTCTTCAGTTGAACTTGATAATGGCATGTATAGGGCTGACCCTTGATGT
261 AAGCCACTTTTTGGTACTCTTCAGTTGAACTTGATAATGGCATGTATAGGGCTGACCCTTGATGT
76428144 TAATTAAGTATCTTTTGGTAATGTATATTCGTATAGCCATGCGAAAATGGCTTGTTTATTTTGAG
326 TAATTAAGTATCTTTTGGTAATGTATATTCGTATAGCCATGCGAAAATGGCTTGTTTATTTTGAG
76428209 TATAACATTATGGTCATTTTGTATATATGGTCTTATGATATGGTTATTAAGTGGTGTGGAAATGT
391 TATAACATTATGGTCATTTTGTATATATGGTCTTATGATATGGTTATTAAGTGGTGTGGAAATGT
*
76428274 TTGGTAATGATTAGCCATTGGAATGGCCAATCATGGTCCTATTGGTGCTACGTATGTCATGGCTA
456 TTGGTAATGATTAGCCATTGGAATGGCCAATCATGGTCCTATTGGTGCTACGTACGTCATGGCTA
76428339 ATCGTGATTATACTTGAAAATAATGTATGTCAATTTACTAATTGATTCATGGAAAATTTGAAATA
521 ATCGTGATTATACTTGAAAATAATGTATGTCAATTTACTAATTGATTCATGGAAAATTTGAAATA
76428404 GGTAAAATTTACCTTAAAAGAGATGCTGACAGCAGCAGTGATGTGAATTTGAAAAATCACTAAAA
586 GGTAAAATTTACCTTAAAAGAGATGCTGACAGCAGCAGTGATGTGAATTTGAAAAATCACTAAAA
*
76428469 ATAGTAGGAATGGAATTAAATAGTGAATAAATTATATAATTGAAGTTTGATGAGTCTATTTTCAT
651 ATAGTAGGAATGGAATTAAATAGTGAATAAATTATATAATTGAAGCTTGATGAGTCTATTTTCAT
76428534 ATGAAAGAAACGAAATGACCATATGAGCCGTATTTTATGAGATGTTTAAGTTTTCATGAAACAGG
716 ATGAAAGAAACGAAATGACCATATGAGCCGTATTTTATGAGATGTTTAAGTTTTCATGAAACAGG
*
76428599 GCCATAGCGTTTTCTGGATCCCCTATGTTCTGATTTTGAAAATTTACCATAAATTAACCAGAGAC
781 GCCAGAGCGTTTTCTGGATCCCCTATGTTCTGATTTTGAAAATTTACCATAAATTAACCAGAGAC
76428664 AATTAGAAGTCATGATTTATATGTACA
846 AATTAGAAGTCATGATTTATATGTACA
76428691 GGATTGGATTTAGCTGGATAAATTGGTTTCACCTTTGTGATATTAATGATAAAAGTGATATCTCG
1 GGATTGGATTTAGCTGGATAAATTGGTTTCACCTTTGTGATATTAATGATAAAAGTGATATCTCG
*
76428756 GTTATGTTTCTATTCGGCCAAGGGATGAAACAAACAAACTTGATATTATTATGCTATTCTTTTAA
66 GTTATGTTTCTATTCGGCCAAGGGATGAAACAAACAAACTTGATATTATTATGCCATTCTTTTAA
76428821 ATGATTTCATTACTTAAAACTTACTGAGCATCAAAATGCTTATTATGTTGCTTTAATTCTCTGTT
131 ATGATTTCATTACTTAAAACTTACTGAGCATCAAAATGCTTATTATGTTGCTTTAATTCTCTGTT
76428886 TTATAGAATTTGTTCGTCAGCTATCGGACTTGGGAGTGTCAAAGTCGAAGTCATCCACACTATCT
196 TTATAGAATTTGTTCGTCAGCTATCGGACTTGGGAGTGTCAAAGTCGAAGTCATCCACACTATCT
76428951 AAGCCACTTTTTGGTACTCTTCAGTTGAACTTGATAATGGCATGTATAGGGCTGACCCTTGATGT
261 AAGCCACTTTTTGGTACTCTTCAGTTGAACTTGATAATGGCATGTATAGGGCTGACCCTTGATGT
76429016 TAATTAAGTATCTTTTGGTAATGTATATTCGTATAGCCATGCGAAAATGGCTTGTTTATTTTGAG
326 TAATTAAGTATCTTTTGGTAATGTATATTCGTATAGCCATGCGAAAATGGCTTGTTTATTTTGAG
*
76429081 TATAACATTATGGTCATTTTATATATATGGTCTTATGATATGGTTATTAAGTGGTGTGGAAATGT
391 TATAACATTATGGTCATTTTGTATATATGGTCTTATGATATGGTTATTAAGTGGTGTGGAAATGT
76429146 TTGGTAATGATTAGCCATTGGAATGGCCAATCATGGTCCTATTGGTGCTACGTACGTCATGGCTA
456 TTGGTAATGATTAGCCATTGGAATGGCCAATCATGGTCCTATTGGTGCTACGTACGTCATGGCTA
*
76429211 ATCGTGATTATACTTGAAAATAATGTATGTCAATTTCCTAATTGATTCATGGAAAATTTGAAATA
521 ATCGTGATTATACTTGAAAATAATGTATGTCAATTTACTAATTGATTCATGGAAAATTTGAAATA
*
76429276 GGTAAAATTTACCTTAAAAGAGATGCTGACAGCAGCAGTGATGTGAATTTGAAAAATCACTCAAA
586 GGTAAAATTTACCTTAAAAGAGATGCTGACAGCAGCAGTGATGTGAATTTGAAAAATCACTAAAA
76429341 ATAGTAGGAATGGAATTAAATAGTGAATAAATTATATAATTGAAGCTTGATGAGTCTATTTTCAT
651 ATAGTAGGAATGGAATTAAATAGTGAATAAATTATATAATTGAAGCTTGATGAGTCTATTTTCAT
76429406 ATGAAAGAAACGAAATGACCATATGAGCCGTATTTTATGAGATGTTTAAGTTTTCATGAAACAGG
716 ATGAAAGAAACGAAATGACCATATGAGCCGTATTTTATGAGATGTTTAAGTTTTCATGAAACAGG
76429471 GCCAGAGCGTTTTCTGGATCCCCTATGTTCTGATTTTGAAAATTTACCATAAATTAACCAGAGAC
781 GCCAGAGCGTTTTCTGGATCCCCTATGTTCTGATTTTGAAAATTTACCATAAATTAACCAGAGAC
76429536 AATTAGAAGTCATGATTTATATGTACA
846 AATTAGAAGTCATGATTTATATGTACA
76429563 G
1 G
76429564 ATTACTTTTT
Statistics
Matches: 1729, Mismatches: 16, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
872 1729 1.00
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (872 bp):
GGATTGGATTTAGCTGGATAAATTGGTTTCACCTTTGTGATATTAATGATAAAAGTGATATCTCG
GTTATGTTTCTATTCGGCCAAGGGATGAAACAAACAAACTTGATATTATTATGCCATTCTTTTAA
ATGATTTCATTACTTAAAACTTACTGAGCATCAAAATGCTTATTATGTTGCTTTAATTCTCTGTT
TTATAGAATTTGTTCGTCAGCTATCGGACTTGGGAGTGTCAAAGTCGAAGTCATCCACACTATCT
AAGCCACTTTTTGGTACTCTTCAGTTGAACTTGATAATGGCATGTATAGGGCTGACCCTTGATGT
TAATTAAGTATCTTTTGGTAATGTATATTCGTATAGCCATGCGAAAATGGCTTGTTTATTTTGAG
TATAACATTATGGTCATTTTGTATATATGGTCTTATGATATGGTTATTAAGTGGTGTGGAAATGT
TTGGTAATGATTAGCCATTGGAATGGCCAATCATGGTCCTATTGGTGCTACGTACGTCATGGCTA
ATCGTGATTATACTTGAAAATAATGTATGTCAATTTACTAATTGATTCATGGAAAATTTGAAATA
GGTAAAATTTACCTTAAAAGAGATGCTGACAGCAGCAGTGATGTGAATTTGAAAAATCACTAAAA
ATAGTAGGAATGGAATTAAATAGTGAATAAATTATATAATTGAAGCTTGATGAGTCTATTTTCAT
ATGAAAGAAACGAAATGACCATATGAGCCGTATTTTATGAGATGTTTAAGTTTTCATGAAACAGG
GCCAGAGCGTTTTCTGGATCCCCTATGTTCTGATTTTGAAAATTTACCATAAATTAACCAGAGAC
AATTAGAAGTCATGATTTATATGTACA
Found at i:76433280 original size:13 final size:13
Alignment explanation
Indices: 76433262--76433289 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
76433252 GTGTTAGTAG
76433262 CAGAATTAAAGGC
1 CAGAATTAAAGGC
76433275 CAGAATTAAAGGC
1 CAGAATTAAAGGC
76433288 CA
1 CA
76433290 AACCATTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.14
Consensus pattern (13 bp):
CAGAATTAAAGGC
Found at i:76436763 original size:28 final size:28
Alignment explanation
Indices: 76436695--76436848 Score: 220
Period size: 28 Copynumber: 5.5 Consensus size: 28
76436685 CATGAGATTG
* * * *
76436695 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
76436724 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
76436752 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
76436780 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
76436808 GCACTAAGTGTGCAAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
76436835 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
76436849 GACTTAATAT
Statistics
Matches: 114, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
27 23 0.20
28 73 0.64
29 18 0.16
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:76439990 original size:41 final size:41
Alignment explanation
Indices: 76439820--76439990 Score: 145
Period size: 41 Copynumber: 4.2 Consensus size: 41
76439810 GATCTAAATC
*
76439820 CGAGCTTGGTCTCAAAGGGCTTTTGAGCCAGTGCTAATAA-
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAAT
* * * * *
76439860 CAGAACTTAGTTTCGAAGGGCTTTAGAGCCAGTG-TCATAAT
1 C-GAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAAT
* * * * *
76439901 CG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGTGGT-CTAAT
1 CGAG-CTTGGTCT-CGAAGGGCTTTTGAGCCAGTGCTAATAAT
* *
76439941 CCGAGCTTGGTCTCGAATGGCTTTTGAGCCAGTGCTAAGAAT
1 -CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAAT
*
76439983 CGGGCTTG
1 CGAGCTTG
76439991 ATTCCGAAGG
Statistics
Matches: 104, Mismatches: 18, Indels: 17
0.75 0.13 0.12
Matches are distributed among these distances:
39 1 0.01
40 36 0.35
41 62 0.60
42 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (41 bp):
CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAAT
Found at i:76444591 original size:55 final size:54
Alignment explanation
Indices: 76444450--76444649 Score: 179
Period size: 55 Copynumber: 3.7 Consensus size: 54
76444440 ATTAGGGTTT
* * * * **
76444450 AAAGATACCAAGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAAGATACCATGTAAGACCATGTCAAGGCATGGCAATGATAACTACTACAAGGC
* * * * *
76444504 AAGGAAATCATGTAAGACCATGTCAAGACATGGCAATGATAAACTACTATAAGGC
1 AAAGATACCATGTAAGACCATGTCAAGGCATGGCAATGAT-AACTACTACAAGGC
* * * * * *
76444559 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAAT-AGTGAGTTC-ATAAGGC
1 AAAGATACCATGTAAGACCATGTCAAGGCATGGCAATGA-TAACTACTACAAGGC
* * * *
76444612 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATG
1 AAAGATACCATGTAAGACCATGTCAAGGCATGGCAATG
76444650 GTAAGTTTAA
Statistics
Matches: 117, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
53 38 0.32
54 37 0.32
55 42 0.36
ACGTcount: A:0.40, C:0.18, G:0.23, T:0.20
Consensus pattern (54 bp):
AAAGATACCATGTAAGACCATGTCAAGGCATGGCAATGATAACTACTACAAGGC
Done.