Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 227 of 373
Found at i:77094722 original size:52 final size:52
Alignment explanation
Indices: 77094609--77094783 Score: 291
Period size: 52 Copynumber: 3.4 Consensus size: 52
77094599 CCTCTTTAAT
* *
77094609 AACTAGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTTAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
77094659 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* *
77094711 AATTGGGGCATAAGCCCTTTTCAGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
77094763 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
77094784 GCACTTCCTC
Statistics
Matches: 117, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
50 9 0.08
51 25 0.21
52 83 0.71
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:77094858 original size:20 final size:20
Alignment explanation
Indices: 77094833--77094908 Score: 104
Period size: 20 Copynumber: 3.9 Consensus size: 20
77094823 TTATGAATTC
*
77094833 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
77094853 ATCATGTGCATGTCATACAT
1 ATCATGTGCATATCATACAT
77094873 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
77094893 ATCATGT--ATATCATAC
1 ATCATGTGCATATCATAC
77094909 CCCACGTATC
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
17 1 0.02
18 8 0.15
20 42 0.79
21 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:77095635 original size:27 final size:27
Alignment explanation
Indices: 77095605--77095669 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
77095595 GGGCATATTC
77095605 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
77095632 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
* *
77095659 ATCTTTTTACC
1 GTCATTTTACC
77095670 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:77095753 original size:27 final size:27
Alignment explanation
Indices: 77095700--77096032 Score: 208
Period size: 27 Copynumber: 12.3 Consensus size: 27
77095690 TTCCATCCTA
* * * *
77095700 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** *
77095727 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * * *
77095754 TAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* * *
77095783 TAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAC
* * *
77095810 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * * *
77095837 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
77095864 C-AGTGGTATTTTGGTAACTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* * *
77095891 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
77095918 CAGGGGTATTTTAGTAATTTTACAGA-
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
77095944 CTAGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAC
* *
77095971 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
77095998 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
77096025 CGAGGGTA
1 CAAGGGTA
77096033 AAACAGTAAT
Statistics
Matches: 247, Mismatches: 50, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
26 25 0.10
27 192 0.78
28 15 0.06
29 15 0.06
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:77095872 original size:54 final size:53
Alignment explanation
Indices: 77095785--77096018 Score: 245
Period size: 54 Copynumber: 4.4 Consensus size: 53
77095775 TAGAAAGTTA
* ** * *
77095785 AGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATT
1 AGGGTATTTCGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACT
* * *
77095838 GAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAACTTTACAAACT
1 -AGGGTATTTCGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACT
* * *
77095892 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAGACT
1 A-GGGTATTTCGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACT
* ** * ** *
77095946 AGGGTATTTTGGTAATTTTACTGATC-GAGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTCGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAAA-CT
**
77096000 AGGGTATTTTAGTAATTTT
1 AGGGTATTTCGGTAATTTT
77096019 GTAAATCGAG
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
52 1 0.01
53 42 0.27
54 111 0.72
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (53 bp):
AGGGTATTTCGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACT
Found at i:77095998 original size:80 final size:81
Alignment explanation
Indices: 77095811--77096018 Score: 251
Period size: 80 Copynumber: 2.6 Consensus size: 81
77095801 TTTGTAAATC
** ** *
77095811 AGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTAGTAATTTTACAAACCAGTGGTATTT
*
77095875 TGGTAACTTTACAAACT
65 TGGTAACTTTACAAACG
* *
77095892 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAGACTAG-GGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGTGGTATTTT
* * *
77095956 GGTAATTTTACTGATCG
66 GGTAACTTTAC-AAACG
** *
77095973 A-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTT
77096019 GTAAATCGAG
Statistics
Matches: 111, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
80 60 0.54
81 50 0.45
82 1 0.01
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGTGGTATTTT
GGTAACTTTACAAACG
Found at i:77096027 original size:54 final size:53
Alignment explanation
Indices: 77095702--77096032 Score: 236
Period size: 54 Copynumber: 6.1 Consensus size: 53
77095692 CCATCCTACA
* * * ** *
77095702 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAAC-C
* * * ** *
77095756 ATGGTATTTCT-ATAATTTTTAGAAAGTTAAGGGTATTTCT-GTAATTTTGTAAATC
1 AGGGTATTT-TGGTAA-TTTTACAAA-CCAAGGGTATTT-TGGTAATTTTGTAAACC
*** * ***
77095811 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACC
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAACC
* * * **
77095865 AGTGGTATTTTGGTAACTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACC
1 AG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAACC
* * * * * * *
77095919 AGGGGTATTTTAGTAATTTTACAGA-CTAGGGTATTTTGGTAATTTTACTGATCG
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTT-GTAAACC
** * *
77095973 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAA-CC
77096027 AGGGTA
1 AGGGTA
77096033 AAACAGTAAT
Statistics
Matches: 219, Mismatches: 46, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
53 40 0.18
54 128 0.58
55 18 0.08
56 33 0.15
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAACC
Found at i:77096040 original size:27 final size:27
Alignment explanation
Indices: 77096011--77096300 Score: 400
Period size: 27 Copynumber: 10.7 Consensus size: 27
77096001 GGGTATTTTA
* *
77096011 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
** ** *
77096038 GTAATTCTACAAATTAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
77096065 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
77096092 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
77096119 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
77096146 GTATTTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
77096173 ATAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
77096200 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
77096227 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
77096254 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
77096281 GTAATTCTACAAATCGAGGG
1 GTAATTCTGTAAATCGAGGG
77096301 CATTTCAGTA
Statistics
Matches: 236, Mismatches: 27, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 236 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:77097807 original size:14 final size:13
Alignment explanation
Indices: 77097777--77097818 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
77097767 CATAATTCTG
77097777 TTATTGTTTTA-TT
1 TTATT-TTTTATTT
77097790 TTATGTTTTTATTT
1 TTAT-TTTTTATTT
77097804 TTATTTATTTATTT
1 TTATTT-TTTATTT
77097818 T
1 T
77097819 CTTTATCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 11 0.42
14 15 0.58
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.79
Consensus pattern (13 bp):
TTATTTTTTATTT
Found at i:77107818 original size:6 final size:6
Alignment explanation
Indices: 77107807--77107839 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
77107797 TCAGTTTCCT
77107807 TTTTTA TTTTTA TTTTT- TATTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA T-TTTTA TTTTTA TTT
77107840 CACCTTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 1 0.04
6 23 0.92
7 1 0.04
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:77107829 original size:12 final size:12
Alignment explanation
Indices: 77107806--77107839 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
77107796 GTCAGTTTCC
77107806 TTTTTTATTTTTA
1 TTTTTTA-TTTTA
77107819 TTTTTTATTTTA
1 TTTTTTATTTTA
77107831 -TTTTTATTT
1 TTTTTTATTT
77107840 CACCTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 5 0.24
13 7 0.33
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTTATTTTA
Found at i:77109598 original size:6 final size:6
Alignment explanation
Indices: 77109579--77109613 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
77109569 ATTGAGTTCA
77109579 TTTA-T TTTATTT TTTATT TTTATT TTTATT TTTAT
1 TTTATT TTTA-TT TTTATT TTTATT TTTATT TTTAT
77109614 GTTTCTTAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 4 0.14
6 19 0.68
7 5 0.18
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTATT
Found at i:77111640 original size:103 final size:103
Alignment explanation
Indices: 77111461--77111667 Score: 353
Period size: 103 Copynumber: 2.0 Consensus size: 103
77111451 GCACATGCCC
* *
77111461 GTGTAAGCCACACGGGCTGGCCATCTGCCAATACGCAAGCCCGTGTTGATTTCGAGTCCTACTTC
1 GTGTAAGCCACACGGGCTGGCCATCTGCCAATACGCAAGCCCGTGTCGATTTCGAGCCCTACTTC
*
77111526 TCTTTTACACTGAAAAACTCAATTTTTAGGGTTTCTAA
66 TCTTTTACACTGAAAAACTCAATTTTTAGGGTTTATAA
*
77111564 GTGTAAGCCACACGGGCTGGCCA-CATGCCAATACGCGAGCCCGTGTCGATTTCGAGCCCTACTT
1 GTGTAAGCCACACGGGCTGGCCATC-TGCCAATACGCAAGCCCGTGTCGATTTCGAGCCCTACTT
*
77111628 CTCTTTTACACTGAAAAATTCAATTTTTAGGGTTTATAA
65 CTCTTTTACACTGAAAAACTCAATTTTTAGGGTTTATAA
77111667 G
1 G
77111668 CATTCTAAAG
Statistics
Matches: 98, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
102 1 0.01
103 97 0.99
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (103 bp):
GTGTAAGCCACACGGGCTGGCCATCTGCCAATACGCAAGCCCGTGTCGATTTCGAGCCCTACTTC
TCTTTTACACTGAAAAACTCAATTTTTAGGGTTTATAA
Found at i:77112232 original size:28 final size:28
Alignment explanation
Indices: 77112201--77112256 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
77112191 TTTTAATTAG
77112201 AAAGAGATTTCAATTAATCAACCTAGAT
1 AAAGAGATTTCAATTAATCAACCTAGAT
77112229 AAAGAGATTTCAATTAATCAACCTAGAT
1 AAAGAGATTTCAATTAATCAACCTAGAT
77112257 TCAGTTGTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.29
Consensus pattern (28 bp):
AAAGAGATTTCAATTAATCAACCTAGAT
Found at i:77113239 original size:14 final size:16
Alignment explanation
Indices: 77113220--77113262 Score: 54
Period size: 14 Copynumber: 2.8 Consensus size: 16
77113210 GGTAATCCAT
77113220 ATTTATTT-ATTTT-A
1 ATTTATTTAATTTTGA
77113234 ATTTATTTAATTTTGA
1 ATTTATTTAATTTTGA
*
77113250 ATTCAGTTTAATT
1 ATTTA-TTTAATT
77113263 CATGTTGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 8 0.32
15 5 0.20
16 5 0.20
17 7 0.28
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (16 bp):
ATTTATTTAATTTTGA
Found at i:77115168 original size:19 final size:19
Alignment explanation
Indices: 77115144--77115182 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
77115134 GTTATAGATG
77115144 TATGAAATAATCACATGCC
1 TATGAAATAATCACATGCC
77115163 TATGAAATAATCACATGCC
1 TATGAAATAATCACATGCC
77115182 T
1 T
77115183 GGTAATGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (19 bp):
TATGAAATAATCACATGCC
Found at i:77123616 original size:56 final size:57
Alignment explanation
Indices: 77123542--77123653 Score: 192
Period size: 56 Copynumber: 2.0 Consensus size: 57
77123532 TGAGGCCGTG
77123542 TGGAAACAGGGCAAAAATTTCC-CTAACACGGGCTACGATAAATTGCCACGACCATGT
1 TGGAAACAGGGCAAAAATTTCCTC-AACACGGGCTACGATAAATTGCCACGACCATGT
*
77123599 TGGAAACA-GGCAAAAATTTCCTCAACACGGGCTACGATAAATTGCCACGGCCATG
1 TGGAAACAGGGCAAAAATTTCCTCAACACGGGCTACGATAAATTGCCACGACCATG
77123654 CGACATGGCC
Statistics
Matches: 53, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
56 44 0.83
57 9 0.17
ACGTcount: A:0.35, C:0.25, G:0.21, T:0.19
Consensus pattern (57 bp):
TGGAAACAGGGCAAAAATTTCCTCAACACGGGCTACGATAAATTGCCACGACCATGT
Found at i:77131776 original size:21 final size:21
Alignment explanation
Indices: 77131750--77131790 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
77131740 CACGACCGTC
77131750 TGACCTATCCACATGGCCATT
1 TGACCTATCCACATGGCCATT
*
77131771 TGACCTATTCACATGGCCAT
1 TGACCTATCCACATGGCCAT
77131791 GTAGCCTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.29
Consensus pattern (21 bp):
TGACCTATCCACATGGCCATT
Found at i:77131798 original size:21 final size:21
Alignment explanation
Indices: 77131751--77131805 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
77131741 ACGACCGTCT
* *
77131751 GACCTATCCACATGGCCATTT
1 GACCTATTCACATGGCCATTA
77131772 GACCTATTCACATGGCCATGTA
1 GACCTATTCACATGGCCAT-TA
77131794 G-CCTATCTCACA
1 GACCTAT-TCACA
77131806 CAGGCACAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
21 23 0.77
22 7 0.23
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (21 bp):
GACCTATTCACATGGCCATTA
Found at i:77132922 original size:103 final size:104
Alignment explanation
Indices: 77132743--77132949 Score: 407
Period size: 103 Copynumber: 2.0 Consensus size: 104
77132733 GATTTTACGC
77132743 GGCCCAACGTTTGCTTGTTTGAGTTTCACAATTCGAAACAGCTAGAAAACTGAGGCATATCCGCC
1 GGCCCAACGTTTGCTTGTTTGAGTTTCACAATTCGAAACAGCTAGAAAACTGAGGCATATCCGCC
77132808 ACTGCCTTTCGGCATAACTTTCTCCAATTAAAA-CAAAA
66 ACTGCCTTTCGGCATAACTTTCTCCAATTAAAACCAAAA
77132846 GGCCCAACGTTTGCTTGTTTGAGTTTCACAATTCGAAACAGCTAGAAAACTGAGGCATATCCGCC
1 GGCCCAACGTTTGCTTGTTTGAGTTTCACAATTCGAAACAGCTAGAAAACTGAGGCATATCCGCC
77132911 ACTGCCTTTCGGCATAACTTTCTCCAATTAAAACCAAAA
66 ACTGCCTTTCGGCATAACTTTCTCCAATTAAAACCAAAA
77132950 ATTAGAACAA
Statistics
Matches: 103, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
103 98 0.95
104 5 0.05
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (104 bp):
GGCCCAACGTTTGCTTGTTTGAGTTTCACAATTCGAAACAGCTAGAAAACTGAGGCATATCCGCC
ACTGCCTTTCGGCATAACTTTCTCCAATTAAAACCAAAA
Found at i:77147193 original size:47 final size:47
Alignment explanation
Indices: 77147141--77147550 Score: 624
Period size: 47 Copynumber: 8.6 Consensus size: 47
77147131 GATAATTGTG
* *
77147141 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77147188 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77147237 ATGTGAAAGTGTATATATATATGTGATAAGGTCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77147288 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77147335 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77147384 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77147431 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
77147478 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
77147525 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
77147551 TCCCGAAGGG
Statistics
Matches: 338, Mismatches: 15, Indels: 19
0.91 0.04 0.05
Matches are distributed among these distances:
46 2 0.01
47 199 0.59
48 2 0.01
49 89 0.26
51 41 0.12
53 5 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:77147397 original size:96 final size:96
Alignment explanation
Indices: 77147141--77147550 Score: 645
Period size: 96 Copynumber: 4.3 Consensus size: 96
77147131 GATAATTGTG
77147141 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
77147204 ACATGTGATAAGGCCTAATGGCCGATGTGATGA
66 --ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77147237 ATGTGAAAGTGTATATATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
77147302 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
77147335 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
77147400 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77147431 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * *
77147494 ATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAG-GCCTAATGGCCGATGTGATGA
77147525 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
77147551 TCCCGAAGGG
Statistics
Matches: 295, Mismatches: 12, Indels: 16
0.91 0.04 0.05
Matches are distributed among these distances:
93 2 0.01
94 92 0.31
95 1 0.00
96 101 0.34
97 2 0.01
98 44 0.15
100 53 0.18
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:77151713 original size:20 final size:20
Alignment explanation
Indices: 77151688--77151726 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
77151678 AAGGACTAAA
* *
77151688 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
77151708 ATGAAAAATTCTAAAATTT
1 ATGAAAAATTCTAAAATTT
77151727 TATGGATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:77159576 original size:37 final size:37
Alignment explanation
Indices: 77159426--77159565 Score: 244
Period size: 37 Copynumber: 3.8 Consensus size: 37
77159416 CGAATAGTCC
* *
77159426 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
77159463 CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
77159500 CCACACGTAGTCATCGGGTCTTACCCGGACATAATTT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
77159537 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
77159566 ATATATTTCC
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:77159767 original size:48 final size:48
Alignment explanation
Indices: 77159706--77160043 Score: 622
Period size: 48 Copynumber: 7.0 Consensus size: 48
77159696 ATATACACAC
*
77159706 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
77159754 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77159802 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77159850 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77159898 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77159946 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
77159994 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77160042 AT
1 AT
77160044 ATTTATCTCG
Statistics
Matches: 282, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 282 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:77163607 original size:28 final size:28
Alignment explanation
Indices: 77163576--77163732 Score: 136
Period size: 28 Copynumber: 5.5 Consensus size: 28
77163566 CTGACTGATT
*
77163576 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
77163604 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
* *
77163633 TCACACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * ** *
77163661 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCGATTAAAGAAC
* * *
77163690 TGGCACACATAGTGCTCGGTTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* *
77163718 TTGCACACACAGTGC
1 TCGCACACATAGTGC
77163733 CTCATAACTC
Statistics
Matches: 99, Mismatches: 26, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
27 1 0.01
28 54 0.55
29 43 0.43
30 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:77163640 original size:29 final size:29
Alignment explanation
Indices: 77163603--77163704 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
77163593 GATTAAAGAA
77163603 CTCGCACACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
* * **
77163632 CTCACACACATAGTG-CTCGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* **
77163660 CTCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
77163689 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
77163705 TCGGTTGAAG
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 22 0.37
29 37 0.63
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:77163650 original size:57 final size:57
Alignment explanation
Indices: 77163579--77163736 Score: 226
Period size: 57 Copynumber: 2.8 Consensus size: 57
77163569 ACTGATTTCG
* * *
77163579 CACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATCTCA
1 CACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTCA
** **
77163636 CACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATCTGG
1 CACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTCA
* * *
77163693 CACACATAGTGCTCGGTTGAAGAACTTGCACACACAGTGCCTCA
1 CACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCA
77163737 TAACTCCAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 91 1.00
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.22
Consensus pattern (57 bp):
CACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTCA
Found at i:77163810 original size:40 final size:40
Alignment explanation
Indices: 77163764--77164014 Score: 430
Period size: 40 Copynumber: 6.3 Consensus size: 40
77163754 CTTTCGAGGT
*
77163764 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* *
77163804 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAA
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
77163844 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
77163884 TTAGCCCGGATACACCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* *
77163924 TTAGCCCGGATTCATCACTAGCATGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* *
77163964 TTAGCCCGGATTCATCACTAGCACGAATGCTCTTTGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
77164004 TTAGCCCGGAT
1 TTAGCCCGGAT
77164015 CTATATAACT
Statistics
Matches: 200, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 200 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
Found at i:77165454 original size:37 final size:37
Alignment explanation
Indices: 77165304--77165443 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
77165294 CGAATAGTCC
* * *
77165304 CCACACGTAGTTATCGGGTCTTACTCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
77165341 CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
77165378 CCACACGTAGTCATCGGGTCTTACCCGGACATAATTT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
77165415 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
77165444 ATATATTTCC
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:77165645 original size:48 final size:48
Alignment explanation
Indices: 77165584--77165921 Score: 604
Period size: 48 Copynumber: 7.0 Consensus size: 48
77165574 ATATACACAC
*
77165584 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
77165632 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
77165680 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77165728 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77165776 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
77165824 ATCTCATACATATTTCACATTAGCCATTCGGCTTGACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
77165872 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77165920 AT
1 AT
77165922 ATTTATCTTG
Statistics
Matches: 279, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 279 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:77169184 original size:26 final size:26
Alignment explanation
Indices: 77169154--77169235 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
77169144 TGAAATTCCC
77169154 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
77169180 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
77169206 TTCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
77169232 ATCA
1 ATCA
77169236 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.35, C:0.27, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:77182580 original size:31 final size:31
Alignment explanation
Indices: 77182544--77182619 Score: 134
Period size: 31 Copynumber: 2.5 Consensus size: 31
77182534 AAAGCAGGAT
*
77182544 CACACGCCCGTGTGTGTAGGCTGTGTGGTCA
1 CACACGCCCGTGTGTGTAAGCTGTGTGGTCA
77182575 CACACGCCCGTGTGTGTAAGCTGTGTGGTCA
1 CACACGCCCGTGTGTGTAAGCTGTGTGGTCA
*
77182606 CACACGCCCATGTG
1 CACACGCCCGTGTG
77182620 CTGAGGTTGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.16, C:0.29, G:0.32, T:0.24
Consensus pattern (31 bp):
CACACGCCCGTGTGTGTAAGCTGTGTGGTCA
Found at i:77189860 original size:60 final size:60
Alignment explanation
Indices: 77189784--77189913 Score: 158
Period size: 60 Copynumber: 2.2 Consensus size: 60
77189774 AACTATGTTA
* * *
77189784 ATATGGG-TAAGGCCCAATATA-TCTCGA-ATTGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCT-AGGCCCAATATACTCT-GATACTATAA-AGGGCTACGGCCCAGATTAATACTG
* * *
77189844 ATATGGGCTAGGCCCAATATACTCTGATACTATAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATACTATAAAGGGCTACGGCCCAGATTAATACTG
77189904 ATATGGGCTA
1 ATATGGGCTA
77189914 AGGACCAGTT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
60 52 0.85
61 9 0.15
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAATATACTCTGATACTATAAAGGGCTACGGCCCAGATTAATACTG
Found at i:77190616 original size:16 final size:17
Alignment explanation
Indices: 77190584--77190616 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
77190574 CATCAAGAAG
77190584 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
77190602 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
77190617 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:77193959 original size:14 final size:13
Alignment explanation
Indices: 77193929--77193965 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
77193919 ATGTTTAAAA
77193929 ACTTTTATTTTTT
1 ACTTTTATTTTTT
77193942 -CTTTTATGTTTTT
1 ACTTTTAT-TTTTT
77193955 ACTTTTATTTT
1 ACTTTTATTTT
77193966 ATTTTAAGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 7 0.32
13 8 0.36
14 7 0.32
ACGTcount: A:0.14, C:0.08, G:0.03, T:0.76
Consensus pattern (13 bp):
ACTTTTATTTTTT
Found at i:77197133 original size:35 final size:35
Alignment explanation
Indices: 77197077--77197146 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
77197067 ACACGGCCTA
* * * *
77197077 AGCCTTGCCACAATGGTAGCTCACATGCCCGTGTC
1 AGCCGTGCCACAAGGGCAGCTCACACGCCCGTGTC
77197112 AGCCGTGCCACAAGGGCAGCTCACACGCCCGTGTC
1 AGCCGTGCCACAAGGGCAGCTCACACGCCCGTGTC
77197147 TTTCGAGGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.20, C:0.37, G:0.26, T:0.17
Consensus pattern (35 bp):
AGCCGTGCCACAAGGGCAGCTCACACGCCCGTGTC
Found at i:77211323 original size:40 final size:40
Alignment explanation
Indices: 77211268--77211489 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
77211258 TATTCGAATG
* *
77211268 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
77211308 ATATCCGGGCTAAGTCCCGAAGGCCTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
77211348 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
77211388 ATATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
77211428 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
77211468 ATATCC-GACTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
77211490 TACTTGGGTT
Statistics
Matches: 165, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
39 13 0.08
40 150 0.91
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:77219441 original size:40 final size:40
Alignment explanation
Indices: 77219345--77219567 Score: 333
Period size: 40 Copynumber: 5.6 Consensus size: 40
77219335 TATTCGAATG
* *
77219345 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGAAT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
*
77219385 GATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTATTGACT
1 -ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
* *
77219426 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
77219466 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
* * *
77219506 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTA-TTGACT
*
77219546 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
77219568 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.08
40 114 0.68
41 40 0.24
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
Found at i:77234285 original size:16 final size:15
Alignment explanation
Indices: 77234255--77234293 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
77234245 CATATAAAGT
* *
77234255 TAATAATAATTAATA
1 TAATTATAATGAATA
77234270 TATATTATAATGAATA
1 TA-ATTATAATGAATA
77234286 TAATTATA
1 TAATTATA
77234294 TATTAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (15 bp):
TAATTATAATGAATA
Found at i:77234301 original size:16 final size:16
Alignment explanation
Indices: 77234260--77234301 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
77234250 AAAGTTAATA
77234260 ATAATTAATATATATT
1 ATAATTAATATATATT
*
77234276 ATAATGAATATA-ATT
1 ATAATTAATATATATT
77234291 ATATATTAATA
1 ATA-ATTAATA
77234302 ATTATCATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (16 bp):
ATAATTAATATATATT
Found at i:77234413 original size:29 final size:30
Alignment explanation
Indices: 77234356--77234413 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
77234346 GTTTTGAAAA
* * *
77234356 TATTTACAAAAAGAGGCATCTAATTTTTAT
1 TATTTACAAAAAGAGGCAACCAAATTTTAT
77234386 TATTTACAAAAAGA-GCAACCAAATTTTA
1 TATTTACAAAAAGAGGCAACCAAATTTTA
77234414 AAAATAATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCAACCAAATTTTAT
Found at i:77242155 original size:7 final size:7
Alignment explanation
Indices: 77242143--77242178 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
77242133 ATTTCTAATG
77242143 ATCCCTC
1 ATCCCTC
77242150 ATCCCTC
1 ATCCCTC
77242157 ATCCCTC
1 ATCCCTC
77242164 AT-CCTC
1 ATCCCTC
*
77242170 ATTCCTC
1 ATCCCTC
77242177 AT
1 AT
77242179 TCATTCTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.21
7 22 0.79
ACGTcount: A:0.17, C:0.50, G:0.00, T:0.33
Consensus pattern (7 bp):
ATCCCTC
Found at i:77242162 original size:14 final size:13
Alignment explanation
Indices: 77242143--77242178 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
77242133 ATTTCTAATG
77242143 ATCCCTCATCCCTC
1 ATCCCTCAT-CCTC
77242157 ATCCCTCATCCTC
1 ATCCCTCATCCTC
*
77242170 ATTCCTCAT
1 ATCCCTCAT
77242179 TCATTCTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.17, C:0.50, G:0.00, T:0.33
Consensus pattern (13 bp):
ATCCCTCATCCTC
Found at i:77245040 original size:69 final size:70
Alignment explanation
Indices: 77244909--77245040 Score: 203
Period size: 69 Copynumber: 1.9 Consensus size: 70
77244899 AGTTTATTAC
* * * * *
77244909 TAATTAATTTACTGCTGTAATGCTGTAAATTGTTGGCTGTCCAAATTAGGACAAATTTATGGTAC
1 TAATTAATATACTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
77244974 TTAGT
66 TTAGT
*
77244979 TAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 TAATTAATATACTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
77245041 GTTATGTGCT
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
69 35 0.62
70 21 0.38
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (70 bp):
TAATTAATATACTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
TTAGT
Found at i:77245852 original size:40 final size:40
Alignment explanation
Indices: 77245799--77245982 Score: 205
Period size: 39 Copynumber: 4.7 Consensus size: 40
77245789 CTTTGATGTA
** * *
77245799 TATCCGGGTTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGACTTAAAGACCCGCAGGCT-TCGTGCTGGAATTG
* *
77245839 TATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGAATTG
1 TATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
* ** *
77245879 TATCCAGACTT-AAGGTCTGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
**
77245918 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
* *
77245957 TATCCGGACTT-AAGATCCGTAGGCTT
1 TATCCGGACTTAAAGACCCGCAGGCTT
77245983 TGTGTTGGTG
Statistics
Matches: 130, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 86 0.66
40 44 0.34
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (40 bp):
TATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
Found at i:77245912 original size:39 final size:39
Alignment explanation
Indices: 77245828--77245982 Score: 220
Period size: 39 Copynumber: 3.9 Consensus size: 39
77245818 GCAGGCTATA
* * ** *
77245828 TGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTG
1 TGCTGGAATTGTATCCGGACTT-AAGGTCCGCAGGCTTCG
* *
77245868 TGCTGGAATTGTATCCAGACTTAAGGTCTGCAGGCTTCG
1 TGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCG
77245907 TGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCG
1 TGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCG
* *
77245946 TGCTGGAATTGTATCCGGACTTAAGATCCGTAGGCTT
1 TGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTT
77245983 TGTGTTGGTG
Statistics
Matches: 104, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 85 0.82
40 19 0.18
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (39 bp):
TGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCG
Found at i:77253336 original size:42 final size:43
Alignment explanation
Indices: 77253289--77253403 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 43
77253279 ACCTGTTTTG
* * * *
77253289 CGTGTAAGACCATGTTTGGGACATTGGCATCG-TATCTGATTT
1 CGTGTAAGACCATGTCTAGGACAGTGGCATCGATATCTGATTA
* * *
77253331 CGTGTAAGACCCTGTCTAGGACAGTGGCATCGATGTTTGATTA
1 CGTGTAAGACCATGTCTAGGACAGTGGCATCGATATCTGATTA
* **
77253374 CATGTAAGACCACATCTAGGAC-GCTGGCAT
1 CGTGTAAGACCATGTCTAGGACAG-TGGCAT
77253404 TATATTTTCT
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
42 29 0.48
43 31 0.52
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTAGGACAGTGGCATCGATATCTGATTA
Found at i:77255971 original size:21 final size:20
Alignment explanation
Indices: 77255945--77255986 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
77255935 GTCCTTAAGC
* *
77255945 AAACTAAACAGAAGAAACTAA
1 AAACTAAAAACAAGAAA-TAA
77255966 AAACTAAAAACAAGAAATAA
1 AAACTAAAAACAAGAAATAA
77255986 A
1 A
77255987 CATTCAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.71, C:0.12, G:0.07, T:0.10
Consensus pattern (20 bp):
AAACTAAAAACAAGAAATAA
Found at i:77257975 original size:12 final size:12
Alignment explanation
Indices: 77257958--77257983 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
77257948 TAAGAGATTA
77257958 ATTATATCTTCC
1 ATTATATCTTCC
77257970 ATTATATCTTCC
1 ATTATATCTTCC
77257982 AT
1 AT
77257984 ATTTTCTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50
Consensus pattern (12 bp):
ATTATATCTTCC
Found at i:77260639 original size:12 final size:13
Alignment explanation
Indices: 77260617--77260645 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
77260607 TAATTAAATG
77260617 AATTAAAAAGCCA
1 AATTAAAAAGCCA
77260630 AATT-AAAAGCCA
1 AATTAAAAAGCCA
77260642 AATT
1 AATT
77260646 TTATCCATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.21
Consensus pattern (13 bp):
AATTAAAAAGCCA
Found at i:77261555 original size:42 final size:42
Alignment explanation
Indices: 77261495--77261646 Score: 187
Period size: 42 Copynumber: 3.6 Consensus size: 42
77261485 AGATTAAGTC
* * * *
77261495 TAAGACGATATCTGGGATATGGTATCGATATGAGACTTCGTG
1 TAAGACCATATCTAGGATATGGCATCGATAAGAGACTTCGTG
* *
77261537 TAAGACCATATCTAGGATATGGCATAGATACGAGACTTCGTG
1 TAAGACCATATCTAGGATATGGCATCGATAAGAGACTTCGTG
* * * * * *
77261579 TAAGACCATACCTGGGCTATTGCCATCGATAAGAGATTTCATG
1 TAAGACCATATCTAGGATA-TGGCATCGATAAGAGACTTCGTG
77261622 TAAGACCATATCTAGGATATGGCAT
1 TAAGACCATATCTAGGATATGGCAT
77261647 TGGTATGGTA
Statistics
Matches: 92, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 58 0.63
43 34 0.37
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (42 bp):
TAAGACCATATCTAGGATATGGCATCGATAAGAGACTTCGTG
Found at i:77275389 original size:41 final size:43
Alignment explanation
Indices: 77275290--77275405 Score: 130
Period size: 41 Copynumber: 2.7 Consensus size: 43
77275280 GAATGCCAAC
*
77275290 GTCCCAGACGTGGTCTTACATGTAATCACATACCGAAGCCACT
1 GTCCCAGACATGGTCTTACATGTAATCACATACCGAAGCCACT
* * * * *
77275333 GTCCCAGATAGGGTCTTACATG-AATGACATA-CGATGCTGA-T
1 GTCCCAGACATGGTCTTACATGTAATCACATACCGAAGC-CACT
* *
77275374 GTCCCAGACATGGTCTTACACGTAACCACATA
1 GTCCCAGACATGGTCTTACATGTAATCACATA
77275406 TATCAATCCC
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
41 25 0.42
42 16 0.27
43 19 0.32
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGTAATCACATACCGAAGCCACT
Found at i:77275466 original size:45 final size:45
Alignment explanation
Indices: 77275372--77275460 Score: 108
Period size: 45 Copynumber: 2.0 Consensus size: 45
77275362 TACGATGCTG
* * **
77275372 ATGTCCCAGACATGGTCTTACACGTAACCACATATATCAATCCCA
1 ATGTCCTAGACATGGTCTTACACGTAAACACATATAGAAATCCCA
*
77275417 ATGTCCTAGACATGGTCTTACACG-AGAACACATATCGGAAATCC
1 ATGTCCTAGACATGGTCTTACACGTA-AACACATAT-AGAAATCC
77275461 TATGTCATGA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
44 1 0.03
45 31 0.84
46 5 0.14
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.24
Consensus pattern (45 bp):
ATGTCCTAGACATGGTCTTACACGTAAACACATATAGAAATCCCA
Found at i:77279739 original size:42 final size:42
Alignment explanation
Indices: 77279624--77279741 Score: 146
Period size: 43 Copynumber: 2.8 Consensus size: 42
77279614 ATACGAATGC
****
77279624 CATATCCCAGATATGGTCTTACATGGGATCTCATATCAATAT
1 CATATCCCAGATATGGTCTTACACAAAATCTCATATCAATAT
* * *
77279666 CAATAGCCCAGTTATGGTCTTACACAAAATCTCATATCGATAT
1 C-ATATCCCAGATATGGTCTTACACAAAATCTCATATCAATAT
* *
77279709 CATATCTCAGATATGGTCTTACACATAATCTCA
1 CATATCCCAGATATGGTCTTACACAAAATCTCA
77279742 ACTAACCATA
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 29 0.45
43 35 0.55
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.32
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACAAAATCTCATATCAATAT
Found at i:77281360 original size:17 final size:17
Alignment explanation
Indices: 77281338--77281371 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
77281328 TAGGTAAGTT
77281338 TGATTAAGGTCAATGAG
1 TGATTAAGGTCAATGAG
77281355 TGATTAAGGTCAATGAG
1 TGATTAAGGTCAATGAG
77281372 ATCAATCAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.29
Consensus pattern (17 bp):
TGATTAAGGTCAATGAG
Found at i:77283156 original size:12 final size:13
Alignment explanation
Indices: 77283134--77283162 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
77283124 TAATTAAATT
77283134 AATTAAAAAGCCA
1 AATTAAAAAGCCA
77283147 AATT-AAAAGCCA
1 AATTAAAAAGCCA
77283159 AATT
1 AATT
77283163 TTATCCATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.21
Consensus pattern (13 bp):
AATTAAAAAGCCA
Found at i:77287888 original size:42 final size:42
Alignment explanation
Indices: 77287842--77287995 Score: 202
Period size: 42 Copynumber: 3.6 Consensus size: 42
77287832 TGAGATTACT
* *
77287842 TGTAAGACCATATCTGGGATATGGCATTGATATGAGACTTTG
1 TGTAAGACCATATCTGGGATATGGCATCGATACGAGACTTTG
* *
77287884 TGTAAGACCCTATCTGGGATATGGCATCGATACGAGACTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATACGAGACTTTG
* * * *
77287926 TGTAAGACCATAGCTGGGCTATTGGCATCGACACGAGA-TTTCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATACGAGACTTT-G
*
77287969 TGTAAGACCATATCTAGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
77287996 TGGTACGGTA
Statistics
Matches: 97, Mismatches: 13, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
42 64 0.66
43 33 0.34
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATACGAGACTTTG
Found at i:77288014 original size:85 final size:84
Alignment explanation
Indices: 77287842--77288014 Score: 197
Period size: 85 Copynumber: 2.0 Consensus size: 84
77287832 TGAGATTACT
* * * * * * *
77287842 TGTAAGACCATATCTGGGATATGGCATTGATATGAGACTTTGTGTAAGACCCTATCTGGGATATG
1 TGTAAGACCATAGCTGGGATATGGCATCGACACGAGACTTTATGTAAGACCATATCTAGGATATG
**
77287907 GCATCGATACGAGACTTCG
66 GCATCGATACGAGACTGAG
*
77287926 TGTAAGACCATAGCTGGGCTATTGGCATCGACACGAGA-TTTCATGTAAGACCATATCTAGGATA
1 TGTAAGACCATAGCTGGGATA-TGGCATCGACACGAGACTTT-ATGTAAGACCATATCTAGGATA
* *
77287990 TGGCATTGGTACG-GTACTGAG
64 TGGCATCGATACGAG-ACTGAG
77288011 TGTA
1 TGTA
77288015 CGAGATTCCC
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
84 23 0.31
85 51 0.69
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (84 bp):
TGTAAGACCATAGCTGGGATATGGCATCGACACGAGACTTTATGTAAGACCATATCTAGGATATG
GCATCGATACGAGACTGAG
Found at i:77299060 original size:45 final size:45
Alignment explanation
Indices: 77298987--77299083 Score: 133
Period size: 45 Copynumber: 2.2 Consensus size: 45
77298977 TAATGAATAG
* *
77298987 AAATAGAGAAATGGAAAACATTTAGAAATGATTATAGTTTTCTCCA
1 AAATGGAGAAATGGAAAACATTTAGAAATGAATATAGTTTTCT-CA
* * *
77299033 AAATGGAGAAATGG-AACCATTTAGAAATGAATGTGGTTTTCTCA
1 AAATGGAGAAATGGAAAACATTTAGAAATGAATATAGTTTTCTCA
77299077 AAATGGA
1 AAATGGA
77299084 AATGAAAATG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 9 0.20
45 24 0.52
46 13 0.28
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.29
Consensus pattern (45 bp):
AAATGGAGAAATGGAAAACATTTAGAAATGAATATAGTTTTCTCA
Found at i:77302402 original size:10 final size:9
Alignment explanation
Indices: 77302379--77302407 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
77302369 ATTATAACAG
77302379 TAAAAAATA
1 TAAAAAATA
77302388 TAAAAAATA
1 TAAAAAATA
77302397 TAAAAAA-A
1 TAAAAAATA
77302405 TAA
1 TAA
77302408 TATATATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.20
9 16 0.80
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (9 bp):
TAAAAAATA
Found at i:77302828 original size:19 final size:19
Alignment explanation
Indices: 77302804--77302841 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
77302794 TTTGAACTTT
77302804 TATTTTTTAATAATTTTAA
1 TATTTTTTAATAATTTTAA
*
77302823 TATTTTTTTATAATTTTAA
1 TATTTTTTAATAATTTTAA
77302842 AAAGTTTAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
TATTTTTTAATAATTTTAA
Found at i:77303847 original size:2 final size:2
Alignment explanation
Indices: 77303840--77303884 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
77303830 GTCACACCTA
*
77303840 AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77303882 AT A
1 AT A
77303885 CGGTTAGGTG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:77306654 original size:42 final size:42
Alignment explanation
Indices: 77306595--77306716 Score: 165
Period size: 43 Copynumber: 2.9 Consensus size: 42
77306585 TTAGGATTAC
77306595 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
* * *
77306637 TGAGACTT-CGTGTAAGACCATAGCTGGGCTATTAGCATCGATA
1 TGAGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* * *
77306680 CGAGATTACATGTAAGACCATATCTAGGATATGGCAT
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCAT
77306717 TGGTATGGTA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 33 0.49
43 35 0.51
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:77310172 original size:15 final size:16
Alignment explanation
Indices: 77310136--77310173 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
77310126 GAAAATGTAA
77310136 TAATTAAACACGAAAC
1 TAATTAAACACGAAAC
*
77310152 TAATTAAAGAC-AAAC
1 TAATTAAACACGAAAC
*
77310167 TCATTAA
1 TAATTAA
77310174 GTGCCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.55, C:0.16, G:0.05, T:0.24
Consensus pattern (16 bp):
TAATTAAACACGAAAC
Found at i:77313138 original size:26 final size:26
Alignment explanation
Indices: 77313078--77313139 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
77313068 TCTCAAAAGT
*
77313078 ACTTCTCAAAAGTACTTTTCCACAGC
1 ACTTCTCAAAAGTACTTTTCCACAAC
* *
77313104 ATTTTTCAAAAGTACTTTTCCACAAC
1 ACTTCTCAAAAGTACTTTTCCACAAC
77313130 ACTTCTCAAA
1 ACTTCTCAAA
77313140 TGTAACGAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.34, C:0.27, G:0.05, T:0.34
Consensus pattern (26 bp):
ACTTCTCAAAAGTACTTTTCCACAAC
Found at i:77315801 original size:73 final size:72
Alignment explanation
Indices: 77315679--77315842 Score: 251
Period size: 73 Copynumber: 2.3 Consensus size: 72
77315669 GGATAGAAGC
77315679 ATGAAAAAGAGGGAGAAGGTTGGAAGGAAATGGGAAGAAGAATTGAAAAACAGAAGATGCTTCAG
1 ATGAAAAAGAGGGAGAAGGTTGGAAGGAAATGGGAAGAAGAATTGAAAAA-AGAAGATGCTTCAG
77315744 ACGA-GAGA
65 AC-ATGAGA
* * * *
77315752 ATGAAAGAGAGAGAGAAGGTTGTAAGGAAATGGGAAGAAGAA-TGAAAAAAAGAAGATGCTTCAT
1 ATGAAAAAGAGGGAGAAGGTTGGAAGGAAATGGGAAGAAGAATTG-AAAAAAGAAGATGCTTCAG
77315816 ACATGAGA
65 ACATGAGA
77315824 ATGAAAAAGAGGGAGAAGG
1 ATGAAAAAGAGGGAGAAGG
77315843 GTAAAGTTGA
Statistics
Matches: 83, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
71 1 0.01
72 38 0.46
73 44 0.53
ACGTcount: A:0.49, C:0.04, G:0.34, T:0.13
Consensus pattern (72 bp):
ATGAAAAAGAGGGAGAAGGTTGGAAGGAAATGGGAAGAAGAATTGAAAAAAGAAGATGCTTCAGA
CATGAGA
Found at i:77315840 original size:72 final size:73
Alignment explanation
Indices: 77315679--77315842 Score: 260
Period size: 72 Copynumber: 2.3 Consensus size: 73
77315669 GGATAGAAGC
*
77315679 ATGAAAAAGAGGGAGAAGGTTGGAAGGAAATGGGAAGAAGAATTGAAAAACAGAAGATGCTTCAG
1 ATGAAAAAGAGGGAGAAGGTTGGAAGGAAATGGGAAGAAGAATTGAAAAAAAGAAGATGCTTCAG
77315744 ACGAGAGA
66 ACGAGAGA
* * * *
77315752 ATGAAAGAGAGAGAGAAGGTTGTAAGGAAATGGGAAGAAGAA-TGAAAAAAAGAAGATGCTTCAT
1 ATGAAAAAGAGGGAGAAGGTTGGAAGGAAATGGGAAGAAGAATTGAAAAAAAGAAGATGCTTCAG
77315816 AC-ATGAGA
66 ACGA-GAGA
77315824 ATGAAAAAGAGGGAGAAGG
1 ATGAAAAAGAGGGAGAAGG
77315843 GTAAAGTTGA
Statistics
Matches: 83, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
71 1 0.01
72 43 0.52
73 39 0.47
ACGTcount: A:0.49, C:0.04, G:0.34, T:0.13
Consensus pattern (73 bp):
ATGAAAAAGAGGGAGAAGGTTGGAAGGAAATGGGAAGAAGAATTGAAAAAAAGAAGATGCTTCAG
ACGAGAGA
Found at i:77316528 original size:22 final size:22
Alignment explanation
Indices: 77316497--77316552 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
77316487 ATTATACCTT
* **
77316497 TTTATCTTATAAATTGTATAGA
1 TTTATATTATAAATTAAATAGA
* *
77316519 TTTATATTATTAATTAAATTGA
1 TTTATATTATAAATTAAATAGA
*
77316541 TATATATTATAA
1 TTTATATTATAA
77316553 GGTTTAAGAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (22 bp):
TTTATATTATAAATTAAATAGA
Found at i:77316708 original size:19 final size:19
Alignment explanation
Indices: 77316684--77316720 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
77316674 AAAAGACTCC
*
77316684 ATAATTAAAATTTTAATTT
1 ATAATTAAAATTTAAATTT
*
77316703 ATAATTATAATTTAAATT
1 ATAATTAAAATTTAAATT
77316721 AACCTGATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATAATTAAAATTTAAATTT
Found at i:77321868 original size:32 final size:32
Alignment explanation
Indices: 77321832--77321898 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
77321822 TATTTTTTGT
* *
77321832 TTTTA-TATTAAAATTTTTTAAATTATTTGCTA
1 TTTTAGTATTAAAA-TTTTAAAATTATTTGCAA
* *
77321864 TTTTAGTTTTAATATTTTAAAATTATTTGCAA
1 TTTTAGTATTAAAATTTTAAAATTATTTGCAA
77321896 TTT
1 TTT
77321899 AAAATCGTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 24 0.80
33 6 0.20
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.60
Consensus pattern (32 bp):
TTTTAGTATTAAAATTTTAAAATTATTTGCAA
Found at i:77321996 original size:20 final size:21
Alignment explanation
Indices: 77321958--77321998 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
77321948 GTCATTATTG
77321958 ATTTGATCACACTATGATGATA
1 ATTTGATCACAC-ATGATGATA
77321980 ATTTGATCACA-ATGATGAT
1 ATTTGATCACACATGATGAT
77321999 GCTAAACGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.42
22 11 0.58
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (21 bp):
ATTTGATCACACATGATGATA
Found at i:77323662 original size:5 final size:5
Alignment explanation
Indices: 77323652--77323680 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
77323642 CCCCAGCTGC
77323652 ATAAT ATAAT ATAAT ATAAT ATAAT ATAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAA
77323681 ATCCATACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:77327722 original size:27 final size:28
Alignment explanation
Indices: 77327692--77327744 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
77327682 ATTCCACATC
* *
77327692 TATTTTATATTTTATA-TTTTAAAATAA
1 TATTATATATATTATATTTTTAAAATAA
77327719 TATTATATATATTATATTTTTAAAAT
1 TATTATATATATTATATTTTTAAAAT
77327745 TTTATTTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (28 bp):
TATTATATATATTATATTTTTAAAATAA
Found at i:77328971 original size:21 final size:20
Alignment explanation
Indices: 77328947--77329043 Score: 74
Period size: 21 Copynumber: 4.7 Consensus size: 20
77328937 GGATTGTTAT
77328947 TTTTAATAAATTTTTTTATAA
1 TTTT-ATAAATTTTTTTATAA
* *
77328968 TTTTA-AAATTTTTATAAATTCA
1 TTTTATAAATTTTT-T-TA-TAA
*
77328990 TTTTATAAATTTTGTTTGTAA
1 TTTTATAAATTTT-TTTATAA
*
77329011 TTTTAT-GATTTTTTTAAATAA
1 TTTTATAAATTTTTTT--ATAA
77329032 TTTT-TAAATTTT
1 TTTTATAAATTTT
77329044 AAAAGGGTTT
Statistics
Matches: 60, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
19 11 0.18
20 8 0.13
21 25 0.42
22 7 0.12
23 8 0.13
24 1 0.02
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (20 bp):
TTTTATAAATTTTTTTATAA
Found at i:77328979 original size:30 final size:31
Alignment explanation
Indices: 77328945--77329002 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
77328935 TTGGATTGTT
*
77328945 ATTTTTAATAAATT-TTTTTAT-AATTTTAAA
1 ATTTTT-ATAAATTCATTTTATAAATTTTAAA
77328975 ATTTTTATAAATTCATTTTATAAATTTT
1 ATTTTTATAAATTCATTTTATAAATTTT
77329003 GTTTGTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 7 0.28
30 12 0.48
31 6 0.24
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (31 bp):
ATTTTTATAAATTCATTTTATAAATTTTAAA
Found at i:77329012 original size:43 final size:41
Alignment explanation
Indices: 77328947--77329043 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 41
77328937 GGATTGTTAT
*
77328947 TTTTAATAAATTTTTTTATAATTTTAAAATTTTTATAAATTCA
1 TTTT-ATAAATTTTTTTATAATTTTAAAATTTTTATAAA-TAA
* ** *
77328990 TTTTATAAATTTTGTTTGTAATTTTATGATTTTTTTAAATAA
1 TTTTATAAATTTT-TTTATAATTTTAAAATTTTTATAAATAA
77329032 TTTT-TAAATTTT
1 TTTTATAAATTTT
77329044 AAAAGGGTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
41 8 0.17
42 15 0.31
43 25 0.52
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (41 bp):
TTTTATAAATTTTTTTATAATTTTAAAATTTTTATAAATAA
Found at i:77330464 original size:20 final size:20
Alignment explanation
Indices: 77330427--77330465 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
77330417 TTTTTTCATG
*
77330427 TTTTAAATAAAAACATATAA
1 TTTTAAATAAAAAAATATAA
77330447 TTTTAAA-AAAATAAATATA
1 TTTTAAATAAAA-AAATATA
77330466 TATATATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (20 bp):
TTTTAAATAAAAAAATATAA
Found at i:77337203 original size:3 final size:3
Alignment explanation
Indices: 77337195--77337219 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
77337185 TCGATTTTAC
77337195 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
77337220 CCAAATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:77337863 original size:3 final size:3
Alignment explanation
Indices: 77337855--77337905 Score: 75
Period size: 3 Copynumber: 16.7 Consensus size: 3
77337845 CTATCATTGC
*
77337855 ATT ATT ATT ATT ATT AATT ATT ATT ATT ATT ATT GTT ATT ATT ATT
1 ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
77337901 TTT AT
1 ATT AT
77337906 CATTGTTTGT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:77351283 original size:30 final size:30
Alignment explanation
Indices: 77351249--77351308 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
77351239 TGTTTGGATT
*
77351249 TAGAATGCATTATAAGTAGATTTTGGTGGC
1 TAGAATGCATTATAAGTAAATTTTGGTGGC
77351279 TAGAATGCATTATAAGTAAATTTTGGTGGC
1 TAGAATGCATTATAAGTAAATTTTGGTGGC
77351309 AAAAACCCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.37
Consensus pattern (30 bp):
TAGAATGCATTATAAGTAAATTTTGGTGGC
Found at i:77353047 original size:7 final size:7
Alignment explanation
Indices: 77353035--77353062 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
77353025 ATCCAAAAAT
77353035 GAAAGAA
1 GAAAGAA
77353042 GAAAGAA
1 GAAAGAA
77353049 GAAAGAA
1 GAAAGAA
77353056 GAAAGAA
1 GAAAGAA
77353063 AAACGATGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (7 bp):
GAAAGAA
Found at i:77354069 original size:18 final size:19
Alignment explanation
Indices: 77354048--77354097 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
77354038 AAATTAGCTG
*
77354048 AATTAATCGAATTAACC-A
1 AATTAACCGAATTAACCTA
*
77354066 AATTACCCGAATT-ACCTA
1 AATTAACCGAATTAACCTA
77354084 AATTAACCGAATTA
1 AATTAACCGAATTA
77354098 TTTGTATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 3 0.11
18 24 0.89
ACGTcount: A:0.46, C:0.20, G:0.06, T:0.28
Consensus pattern (19 bp):
AATTAACCGAATTAACCTA
Found at i:77354128 original size:6 final size:6
Alignment explanation
Indices: 77354117--77354163 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
77354107 AATTATATGT
* *
77354117 TTTTTA TTTTTA TTTTTA TTTTTA GTTTTA GTTTTAGA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTT
77354164 ATTAAATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
6 27 0.77
7 7 0.20
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:77363855 original size:17 final size:19
Alignment explanation
Indices: 77363823--77363864 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 19
77363813 TAAAGTTATG
*
77363823 ATAATTGTATATTTAA-AA
1 ATAATTATATATTTAATAA
77363841 ATAATTATA-ATTTAATAA
1 ATAATTATATATTTAATAA
77363859 A-AATTA
1 ATAATTA
77363865 AGATGATTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (19 bp):
ATAATTATATATTTAATAA
Found at i:77364732 original size:12 final size:13
Alignment explanation
Indices: 77364715--77364744 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
77364705 TGCAAATGAA
77364715 AATTT-ATGTTTT
1 AATTTAATGTTTT
77364727 AATTTAATGTTTT
1 AATTTAATGTTTT
77364740 AATTT
1 AATTT
77364745 CACACCCGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
AATTTAATGTTTT
Found at i:77365320 original size:22 final size:22
Alignment explanation
Indices: 77365293--77365371 Score: 79
Period size: 22 Copynumber: 3.5 Consensus size: 22
77365283 CATGTACAGT
*
77365293 GGTTTGCATATATCATATATAG
1 GGTTTGCATATAACATATATAG
77365315 GGTTTGCATATAACATATATATAG
1 GGTTTGCATATAAC--ATATATAG
* ** *
77365339 AAG-TCACATGTAACATATATAG
1 -GGTTTGCATATAACATATATAG
77365361 GGTTTGCATAT
1 GGTTTGCATAT
77365372 TTAATCTAGG
Statistics
Matches: 44, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
21 1 0.02
22 26 0.59
24 16 0.36
25 1 0.02
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (22 bp):
GGTTTGCATATAACATATATAG
Found at i:77367245 original size:13 final size:13
Alignment explanation
Indices: 77367227--77367270 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
77367217 GATTTTGCAT
77367227 ATCTGTTATTTGA
1 ATCTGTTATTTGA
*
77367240 ATCTGTTATCTGA
1 ATCTGTTATTTGA
*
77367253 ATCT-TGGATTTGA
1 ATCTGT-TATTTGA
77367266 ATCTG
1 ATCTG
77367271 AATTCGTATC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
12 1 0.04
13 25 0.96
ACGTcount: A:0.23, C:0.11, G:0.18, T:0.48
Consensus pattern (13 bp):
ATCTGTTATTTGA
Found at i:77375732 original size:42 final size:42
Alignment explanation
Indices: 77375684--77375837 Score: 168
Period size: 42 Copynumber: 3.6 Consensus size: 42
77375674 TGAGATTACT
* * * *
77375684 TGTAAGACCATATCTCGGATAGGGTATCGATACAAGACTTCA
1 TGTAAGACCATATCTAGGATATGGCATCGATACGAGACTTCA
* * * *
77375726 TGTAAGACCATATCTAGGATATGGCATTGATATGAGACATCG
1 TGTAAGACCATATCTAGGATATGGCATCGATACGAGACTTCA
* * *
77375768 TGTAAGACCAT-TGCTTGGTTATTGGCATCGATGCGAGA-TTACA
1 TGTAAGACCATAT-CTAGGATA-TGGCATCGATACGAGACTT-CA
77375811 TGTAAGACCATATCTAGGATATGGCAT
1 TGTAAGACCATATCTAGGATATGGCAT
77375838 TGGTATGGTA
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
41 1 0.01
42 58 0.64
43 31 0.34
44 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATGGCATCGATACGAGACTTCA
Found at i:77381502 original size:39 final size:39
Alignment explanation
Indices: 77381448--77381525 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
77381438 CCTTTTGTAA
*
77381448 AGGTTCTGCGGCGGAATCATGGTGCTGAGGTAGCCACGT
1 AGGTTCTGCGGCGGAATCATGATGCTGAGGTAGCCACGT
77381487 AGGTTCTGCGGCGGAATCATGATGCTGAGGTAGCCACGT
1 AGGTTCTGCGGCGGAATCATGATGCTGAGGTAGCCACGT
77381526 GGGAACCTGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.19, C:0.21, G:0.37, T:0.23
Consensus pattern (39 bp):
AGGTTCTGCGGCGGAATCATGATGCTGAGGTAGCCACGT
Found at i:77384380 original size:13 final size:13
Alignment explanation
Indices: 77384362--77384389 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
77384352 GATTTTTCAT
77384362 ATTTGTTATCTGA
1 ATTTGTTATCTGA
77384375 ATTTGTTATCTGA
1 ATTTGTTATCTGA
77384388 AT
1 AT
77384390 CTAGGATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.07, G:0.14, T:0.54
Consensus pattern (13 bp):
ATTTGTTATCTGA
Found at i:77384407 original size:6 final size:6
Alignment explanation
Indices: 77384382--77384436 Score: 56
Period size: 6 Copynumber: 9.0 Consensus size: 6
77384372 TGAATTTGTT
* * * * *
77384382 ATCTGA ATCTAGG ATTTGA ATCTGA ATCTGA ATCTGA ATCCGT ATCTGT
1 ATCTGA ATCT-GA ATCTGA ATCTGA ATCTGA ATCTGA ATCTGA ATCTGA
77384431 ATCTGA
1 ATCTGA
77384437 CTGCCGACAT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
6 36 0.90
7 4 0.10
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36
Consensus pattern (6 bp):
ATCTGA
Found at i:77387592 original size:21 final size:24
Alignment explanation
Indices: 77387566--77387611 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 24
77387556 ATATAATATA
*
77387566 TTTTTAA-ACTTTTTT-T-AATTG
1 TTTTTAATAATTTTTTATAAATTG
77387587 TTTTTAATAATTTTTTATAAATTG
1 TTTTTAATAATTTTTTATAAATTG
77387611 T
1 T
77387612 AATAATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 7 0.33
22 7 0.33
23 1 0.05
24 6 0.29
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.65
Consensus pattern (24 bp):
TTTTTAATAATTTTTTATAAATTG
Found at i:77393725 original size:19 final size:20
Alignment explanation
Indices: 77393673--77393725 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
77393663 TTTATTTTTT
* *
77393673 AACCATTAAACCAATTTTCTC
1 AACCTTTAAA-CAATTTTCAC
* *
77393694 AAACTTGAAACAATTTT-AC
1 AACCTTTAAACAATTTTCAC
77393713 AACCTTTAAACAA
1 AACCTTTAAACAA
77393726 AAAATTTGGG
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 12 0.46
20 7 0.27
21 7 0.27
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.30
Consensus pattern (20 bp):
AACCTTTAAACAATTTTCAC
Found at i:77406554 original size:43 final size:43
Alignment explanation
Indices: 77406504--77407063 Score: 455
Period size: 43 Copynumber: 13.0 Consensus size: 43
77406494 ATGTGATTTG
* * *
77406504 AGATATTTTGGTTTATTCGATGATGCACTGTATGTGCCAGTGT
1 AGATACTTCGGTTTATTCGATGATGCACTGTATGTGCCAGTAT
* * * * *
77406547 AGATATTTTGGTTTATTCGATGATGCAATGTGTGTGCTAGTAT
1 AGATACTTCGGTTTATTCGATGATGCACTGTATGTGCCAGTAT
* * * * * * *
77406590 AGTTACTTCGATATATCCGATGATGCAATATATGTGCCAGTAGA
1 AGATACTTCGGTTTATTCGATGATGCACTGTATGTGCCAGTA-T
* * * * * * *
77406634 AAAAAATT-GATTTATCCGATGATACATTGTATGTGCCAGTAT
1 AGATACTTCGGTTTATTCGATGATGCACTGTATGTGCCAGTAT
* * * * *
77406676 AGTTACTTCGGTATATCCGATGATTCACTGCATGTGCCAGTAT
1 AGATACTTCGGTTTATTCGATGATGCACTGTATGTGCCAGTAT
* * * * * *
77406719 AGATACTTTGGTTTATTTGATTATGCACTGTGTGTGTCGGTAT
1 AGATACTTCGGTTTATTCGATGATGCACTGTATGTGCCAGTAT
* * * *
77406762 AGATACTTTGGTTTA-TCTGATGATGCATTGTTTGTGCCACTAT
1 AGATACTTCGGTTTATTC-GATGATGCACTGTATGTGCCAGTAT
* * * * * *
77406805 AGTTACTTCAGTATA-TCTGATGATGCACTGTATGTGGCAATAA
1 AGATACTTCGGTTTATTC-GATGATGCACTGTATGTGCCAGTAT
* * *
77406848 AGATACTTCGGTTTATCCGATGATGAACTATATGTGCCAGTAT
1 AGATACTTCGGTTTATTCGATGATGCACTGTATGTGCCAGTAT
* * * * * * *
77406891 AGATAC-TCTGATTTATCCGGTTATGCACTGTGTGTGCCCGGAT
1 AGATACTTC-GGTTTATTCGATGATGCACTGTATGTGCCAGTAT
* * * * *
77406934 AGTTACTTCAGTATATTCGATGATGCACTATATGTGCCAATAT
1 AGATACTTCGGTTTATTCGATGATGCACTGTATGTGCCAGTAT
*
77406977 AGATACTTCGGTTTA-TCTGATGATGCACTGTATGTGCCAATAT
1 AGATACTTCGGTTTATTC-GATGATGCACTGTATGTGCCAGTAT
* * * * * *
77407020 AGATACTTCGATATATTAGATGATGCATTGTGTGTGTCAGTAT
1 AGATACTTCGGTTTATTCGATGATGCACTGTATGTGCCAGTAT
77407063 A
1 A
77407064 ATTACATTGA
Statistics
Matches: 410, Mismatches: 99, Indels: 16
0.78 0.19 0.03
Matches are distributed among these distances:
42 9 0.02
43 393 0.96
44 8 0.02
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (43 bp):
AGATACTTCGGTTTATTCGATGATGCACTGTATGTGCCAGTAT
Found at i:77407021 original size:129 final size:128
Alignment explanation
Indices: 77406515--77407055 Score: 519
Period size: 129 Copynumber: 4.2 Consensus size: 128
77406505 GATATTTTGG
* * * * * * ** * * *
77406515 TTTATTCGATGATGCACTGTATGTGCCAGTGTAGATATTTTGGTTTATTCGATGATGCAATGTGT
1 TTTATCCGATGATGCATTGTATGTGCCCGTATAGTTACTTCAGTATATTCGATGATGCACTGTAT
* * * * * * * * * *
77406580 GTGCTAGTATAGTTACTTCGATATATCCGATGATGCAATATATGTGCCAGTAGAAAAAAATTGA
66 GTGCCAATATAGATACTTCGGTTTATCCGATGATGCACTATATGTGCCAGTA-TAGATACTTGA
* * * * * *
77406644 TTTATCCGATGATACATTGTATGTGCCAGTATAGTTACTTCGGTATATCCGATGATTCACTGCAT
1 TTTATCCGATGATGCATTGTATGTGCCCGTATAGTTACTTCAGTATATTCGATGATGCACTGTAT
* * ** * * * * * *
77406709 GTGCCAGTATAGATACTTTGGTTTATTTGATTATGCACTGTGTGTGTCGGTATAGATACTTTGG
66 GTGCCAATATAGATACTTCGGTTTATCCGATGATGCACTATATGTGCCAGTATAGATAC-TTGA
* *
77406773 TTTATCTGATGATGCATTGTTTGTGCCAC-TATAGTTACTTCAGTATA-TCTGATGATGCACTGT
1 TTTATCCGATGATGCATTGTATGTGCC-CGTATAGTTACTTCAGTATATTC-GATGATGCACTGT
* * *
77406836 ATGTGGCAATAAAGATACTTCGGTTTATCCGATGATGAACTATATGTGCCAGTATAGATACTCTG
64 ATGTGCCAATATAGATACTTCGGTTTATCCGATGATGCACTATATGTGCCAGTATAGATACT-TG
77406901 A
128 A
* * * * * *
77406902 TTTATCCGGTTATGCACTGTGTGTGCCCGGATAGTTACTTCAGTATATTCGATGATGCACTATAT
1 TTTATCCGATGATGCATTGTATGTGCCCGTATAGTTACTTCAGTATATTCGATGATGCACTGTAT
* * *
77406967 GTGCCAATATAGATACTTCGGTTTATCTGATGATGCACTGTATGTGCCAATATAGATACTTCGA
66 GTGCCAATATAGATACTTCGGTTTATCCGATGATGCACTATATGTGCCAGTATAGATACTT-GA
* ** *
77407031 TATATTAGATGATGCATTGTGTGTG
1 TTTATCCGATGATGCATTGTATGTG
77407056 TCAGTATAAT
Statistics
Matches: 334, Mismatches: 71, Indels: 14
0.80 0.17 0.03
Matches are distributed among these distances:
128 7 0.02
129 325 0.97
130 2 0.01
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (128 bp):
TTTATCCGATGATGCATTGTATGTGCCCGTATAGTTACTTCAGTATATTCGATGATGCACTGTAT
GTGCCAATATAGATACTTCGGTTTATCCGATGATGCACTATATGTGCCAGTATAGATACTTGA
Found at i:77412443 original size:28 final size:28
Alignment explanation
Indices: 77412412--77412482 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
77412402 TTGATTTTCG
* *
77412412 GCACTAAGTATGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
* *
77412440 GCACTAAGTGTGCTAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
77412468 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
77412483 CCTTATCGAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:77422491 original size:28 final size:29
Alignment explanation
Indices: 77422455--77422555 Score: 141
Period size: 29 Copynumber: 3.5 Consensus size: 29
77422445 TATAGTAAGT
* * *
77422455 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
* *
77422483 TCGTACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
77422512 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
77422541 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
77422556 CAATTTCATG
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 18 0.28
29 46 0.72
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:77427402 original size:93 final size:93
Alignment explanation
Indices: 77427238--77427493 Score: 440
Period size: 93 Copynumber: 2.8 Consensus size: 93
77427228 CGCCCATAAG
* * *
77427238 CGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAATTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
77427303 ATGAGCTCAGATGCCTAGTTACATCTCA
66 ACGAGCTCAGATGCCTAGTTACATCTCA
* *
77427331 CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAAGTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
77427396 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCAGATGCCTAGTTACATCTCA
*
77427424 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
77427489 ACGAG
66 ACGAG
77427494 TTCGTATGCC
Statistics
Matches: 153, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 153 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATCTCA
Found at i:77427453 original size:47 final size:47
Alignment explanation
Indices: 77427292--77427453 Score: 172
Period size: 47 Copynumber: 3.5 Consensus size: 47
77427282 AGTGAATTCG
* *
77427292 GACTCAACTCAATGAGCTCAGATGCCTAGTTACATCTCACGAACTCA
1 GACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCA
* * * *
77427339 GACTCAACTCAACGAGTTCGGA---C--GTTCGCATCCATAAGTGAACTCA
1 GACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-CGAACTCA
* *
77427385 GACTCAAGTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCG
1 GACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCA
*
77427432 GACTCAACTCAACGAGTTCGGA
1 GACTCAACTCAACGAGCTCGGA
77427454 CGTTCGCATC
Statistics
Matches: 92, Mismatches: 14, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 27 0.29
47 45 0.49
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (47 bp):
GACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCA
Found at i:77427497 original size:46 final size:46
Alignment explanation
Indices: 77427231--77427493 Score: 227
Period size: 46 Copynumber: 5.7 Consensus size: 46
77427221 TGTAACCCGC
*
77427231 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * * * * *
77427277 CCATAAGTGAATTCGGACTCAACTCAATGAGCTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTC-G--GAC--GTTCGCAT
* *
77427327 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * *
77427370 CCATAAGTGAACTCAGACTCAAGTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGA---C--GTTCGCAT
* * *
77427420 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCAT
* *
77427463 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCAGACTCAACTCAACGAG
77427494 TTCGTATGCC
Statistics
Matches: 172, Mismatches: 27, Indels: 36
0.73 0.11 0.15
Matches are distributed among these distances:
42 6 0.03
43 6 0.03
44 5 0.03
45 4 0.02
46 81 0.47
47 49 0.28
48 4 0.02
49 5 0.03
50 6 0.03
51 6 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:77430521 original size:37 final size:37
Alignment explanation
Indices: 77430468--77430570 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
77430458 CGAATAGTCC
*
77430468 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
77430505 CCACACATAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
77430542 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
77430571 ATATATTTCC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:77430771 original size:48 final size:48
Alignment explanation
Indices: 77430711--77431087 Score: 664
Period size: 48 Copynumber: 7.9 Consensus size: 48
77430701 ATACACACAC
* *
77430711 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
77430759 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
77430807 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
77430855 ATCCCATACATATTTCACATTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
77430903 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
77430951 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
77430999 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
77431047 ATCTCATATATATTTCACATTAGCTATTCGGCTTTACCACA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
77431088 CACATATATA
Statistics
Matches: 317, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 317 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:77436157 original size:28 final size:28
Alignment explanation
Indices: 77436126--77436197 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
77436116 GTTGATTTTC
*
77436126 AGCACTAAGTATGCGAGTTTAATT-GTA
1 AGCACTAAGTATGCGAGTTTAATTATTA
*
77436153 TAGCACTAAGTGA-GCGAGTTTGATTATTA
1 -AGCACTAAGT-ATGCGAGTTTAATTATTA
*
77436182 AGCACTAAGTGTGCGA
1 AGCACTAAGTATGCGA
77436198 ACTTACTATA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
28 35 0.92
29 3 0.08
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTATGCGAGTTTAATTATTA
Found at i:77436640 original size:13 final size:13
Alignment explanation
Indices: 77436622--77436652 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
77436612 AAATGAAGTG
77436622 TATTATGCATATA
1 TATTATGCATATA
77436635 TATTATGCATATA
1 TATTATGCATATA
77436648 TATTA
1 TATTA
77436653 CATAATGATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (13 bp):
TATTATGCATATA
Found at i:77442594 original size:40 final size:39
Alignment explanation
Indices: 77442544--77442729 Score: 187
Period size: 40 Copynumber: 4.7 Consensus size: 39
77442534 TTGAATGCTG
* *
77442544 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-AATAAA
* * *
77442584 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TAATAAA
* * *
77442624 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAATAAA
* **
77442664 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAATAAA
* *
77442704 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77442730 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 117 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAATAAA
Found at i:77442681 original size:80 final size:81
Alignment explanation
Indices: 77442544--77442727 Score: 212
Period size: 80 Copynumber: 2.3 Consensus size: 81
77442534 TTGAATGCTG
* * *
77442544 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
77442608 TGTGCGAGATACTAAA
66 TGTGCGAGATACTAAA
* * * * **
77442624 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* **
77442687 TTGTGCGAGTTGTTAAA
65 TTGTGCGAGATACTAAA
* *
77442704 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
77442728 TGAACGAGGA
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 1 0.01
80 80 0.92
81 6 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:77448774 original size:40 final size:39
Alignment explanation
Indices: 77448724--77448909 Score: 187
Period size: 40 Copynumber: 4.7 Consensus size: 39
77448714 TTGAATGCTG
* *
77448724 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-AATAAA
* * *
77448764 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TAATAAA
* * *
77448804 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAATAAA
* **
77448844 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAATAAA
* *
77448884 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77448910 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 117 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAATAAA
Found at i:77448861 original size:80 final size:81
Alignment explanation
Indices: 77448724--77448907 Score: 212
Period size: 80 Copynumber: 2.3 Consensus size: 81
77448714 TTGAATGCTG
* * *
77448724 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
77448788 TGTGCGAGATACTAAA
66 TGTGCGAGATACTAAA
* * * * **
77448804 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* **
77448867 TTGTGCGAGTTGTTAAA
65 TTGTGCGAGATACTAAA
* *
77448884 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
77448908 TGAACGAGGA
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 1 0.01
80 80 0.92
81 6 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:77452219 original size:16 final size:17
Alignment explanation
Indices: 77452187--77452220 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
77452177 ATTAATTAAA
77452187 TTAGGGTTTAAGGTTTT
1 TTAGGGTTTAAGGTTTT
*
77452204 TTAGGG-TTAGGGTTTT
1 TTAGGGTTTAAGGTTTT
77452220 T
1 T
77452221 AATTAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.15, C:0.00, G:0.32, T:0.53
Consensus pattern (17 bp):
TTAGGGTTTAAGGTTTT
Found at i:77452306 original size:24 final size:23
Alignment explanation
Indices: 77452267--77452323 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
77452257 CTAAACTACT
77452267 AAAA-CCTAATCCTAAAACAATCA
1 AAAACCCTAATCCTAAAA-AATCA
*
77452290 AAAACCCTAA-CCTTAAAAAATCC
1 AAAACCCTAATCC-TAAAAAATCA
*
77452313 TAAACCCTAAT
1 AAAACCCTAAT
77452324 TTAATTGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
23 19 0.66
24 10 0.34
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.19
Consensus pattern (23 bp):
AAAACCCTAATCCTAAAAAATCA
Found at i:77452432 original size:16 final size:17
Alignment explanation
Indices: 77452408--77452442 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
77452398 AAAAAATACT
*
77452408 AAAATCCTAAACC-TTA
1 AAAACCCTAAACCATTA
77452424 AAAACCCTAAACCATTA
1 AAAACCCTAAACCATTA
77452441 AA
1 AA
77452443 CCCTAACCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.54, C:0.26, G:0.00, T:0.20
Consensus pattern (17 bp):
AAAACCCTAAACCATTA
Found at i:77454430 original size:47 final size:46
Alignment explanation
Indices: 77454369--77454531 Score: 129
Period size: 47 Copynumber: 3.4 Consensus size: 46
77454359 CCGATGTGTA
* *
77454369 TCCCTGACACGTCTTACACTGGCTATCTCTGTTGAGACCGATGCATG
1 TCCCAGACATGTCTTACACTGGCTATCTCTGTTG-GACCGATGCATG
**
77454416 TCCCAGACATGTCTTACTTTGGCACTCATCTCTG-T--ACCGATGCCATG
1 TCCCAGACATGTCTTACACTGG--CT-ATCTCTGTTGGACCGATG-CATG
* * * *
77454463 TCCTAGACATGGTCTTACACTGGC--TCTCATTTATGCGTGCTGATGCATG
1 TCCCAGACAT-GTCTTACACTGGCTATCTC-TGT-TG-G-ACCGATGCATG
77454512 TCCCAGACATGTCTTACACT
1 TCCCAGACATGTCTTACACT
77454532 AGACAACTCT
Statistics
Matches: 93, Mismatches: 11, Indels: 23
0.73 0.09 0.18
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
46 9 0.10
47 31 0.33
48 20 0.22
49 16 0.17
50 12 0.13
ACGTcount: A:0.20, C:0.29, G:0.19, T:0.32
Consensus pattern (46 bp):
TCCCAGACATGTCTTACACTGGCTATCTCTGTTGGACCGATGCATG
Found at i:77454526 original size:48 final size:46
Alignment explanation
Indices: 77454405--77454531 Score: 146
Period size: 48 Copynumber: 2.7 Consensus size: 46
77454395 CTCTGTTGAG
** *
77454405 ACCGATGCATGTCCCAGACATGTCTTACTTTGGCACTCATCTCTGT
1 ACCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTATGT
* * *
77454451 ACCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATTTATGCGT
1 ACCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCTAT--GT
* *
77454501 GCTGATGCATGTCCCAGACATGTCTTACACT
1 ACCGATGCATGTCCCAGACATGTCTTACACT
77454532 AGACAACTCT
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
46 7 0.10
47 13 0.19
48 28 0.41
49 13 0.19
50 7 0.10
ACGTcount: A:0.20, C:0.29, G:0.19, T:0.31
Consensus pattern (46 bp):
ACCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTATGT
Found at i:77475248 original size:44 final size:43
Alignment explanation
Indices: 77475064--77475268 Score: 259
Period size: 43 Copynumber: 4.8 Consensus size: 43
77475054 GTAAAAAAAA
* *** *
77475064 CGCCGCT-AAAGTCGTGGCTTTTAGCGGCGTTTGTTAAAAAAT
1 CGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTTGGGAAAG
* * * * *
77475106 CGCTGCTAAAAGCCACGACTTTTAGCGGCGTTTTTTGGGAAAG
1 CGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTTGGGAAAG
* *
77475149 CGCCGCTAAAAGTCGTGGCTTTTAGCAGCGTTTGTTGGGAAAG
1 CGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTTGGGAAAG
* *
77475192 TGCCGCTAAAAGTCATGTCTTTTAGCGGCGTTTGTTGGGGAAAG
1 CGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTT-GGGAAAG
*
77475236 CACCGCTAAAAGTCATGGCTTTTAGCGGCGTTT
1 CGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTT
77475269 TTTTTGGAAA
Statistics
Matches: 137, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
42 6 0.04
43 94 0.69
44 37 0.27
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (43 bp):
CGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTTGGGAAAG
Found at i:77492344 original size:18 final size:19
Alignment explanation
Indices: 77492299--77492346 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
77492289 CATGATATAC
77492299 ATAACATATATATAAAAACA
1 ATAACATA-ATATAAAAACA
* *
77492319 ATAA-ATAATATGAAAATA
1 ATAACATAATATAAAAACA
77492337 A-AACATAATA
1 ATAACATAATA
77492347 AAGATTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 2 0.08
18 16 0.64
19 3 0.12
20 4 0.16
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.25
Consensus pattern (19 bp):
ATAACATAATATAAAAACA
Found at i:77492463 original size:17 final size:17
Alignment explanation
Indices: 77492441--77492477 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
77492431 AGTAATTAAT
77492441 AAATATAAT-ATATATGA
1 AAATATAATAATATAT-A
77492458 AAATATAATAATATATA
1 AAATATAATAATATATA
77492475 AAA
1 AAA
77492478 AGATGTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
AAATATAATAATATATA
Found at i:77492627 original size:19 final size:19
Alignment explanation
Indices: 77492603--77492640 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
77492593 AAAATAAACA
*
77492603 AATAATACAATATATATAG
1 AATAATACAATAAATATAG
*
77492622 AATAATATAATAAATATAG
1 AATAATACAATAAATATAG
77492641 GACTAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.32
Consensus pattern (19 bp):
AATAATACAATAAATATAG
Found at i:77494508 original size:17 final size:19
Alignment explanation
Indices: 77494472--77494509 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
77494462 ATTAATGTCA
*
77494472 TGCAAGAAGAGTATAAGTT
1 TGCAAGAAGAATATAAGTT
77494491 TGCAAGAA-AATA-AAGTT
1 TGCAAGAAGAATATAAGTT
77494508 TG
1 TG
77494510 AGAACTTGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 3 0.17
19 8 0.44
ACGTcount: A:0.45, C:0.05, G:0.24, T:0.26
Consensus pattern (19 bp):
TGCAAGAAGAATATAAGTT
Found at i:77507652 original size:31 final size:31
Alignment explanation
Indices: 77507617--77507685 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
77507607 TTATGTATTT
*
77507617 TTATATTAGATTATTTAAATAGAATTGATCA
1 TTATATTAAATTATTTAAATAGAATTGATCA
* * *
77507648 TTATATTAAATTATTTAAATATAATTTATTA
1 TTATATTAAATTATTTAAATAGAATTGATCA
77507679 TTATATT
1 TTATATT
77507686 TAAAAATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.52
Consensus pattern (31 bp):
TTATATTAAATTATTTAAATAGAATTGATCA
Done.