Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 229 of 373
Found at i:77839713 original size:174 final size:174
Alignment explanation
Indices: 77839448--77839949 Score: 959
Period size: 174 Copynumber: 2.9 Consensus size: 174
77839438 AAATTGTACA
77839448 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
77839513 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
77839578 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
77839622 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
77839687 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
77839752 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
77839796 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
77839861 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
77839926 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
77839950 ACCTTGAGTT
Statistics
Matches: 321, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 321 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:77841521 original size:31 final size:31
Alignment explanation
Indices: 77841473--77841531 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
77841463 AAAAATGCTG
*
77841473 TTTTTTTAAAAAAAATTATCAGATTAGGTCA
1 TTTTTTTAAAAAAAATTATCAGACTAGGTCA
* * *
77841504 TTTTTTTCAAAAGAATTATGAGACTAGG
1 TTTTTTTAAAAAAAATTATCAGACTAGG
77841532 CCACAATAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.41
Consensus pattern (31 bp):
TTTTTTTAAAAAAAATTATCAGACTAGGTCA
Found at i:77844770 original size:46 final size:46
Alignment explanation
Indices: 77844657--77844871 Score: 173
Period size: 46 Copynumber: 4.7 Consensus size: 46
77844647 ATGGTTAAAG
* * * *
77844657 GATGCCATGGTGTCTTTCAACCATGGTCTTAATCA-TAGCCGACTT
1 GATGCCATAGTGTCTTTCAACCATGGTCTTATTCATTACCCAACTT
** * * *
77844702 GATGTGATAGTGTCTTTCAACCATGGTTTTATTCATTCCCCAATTT
1 GATGCCATAGTGTCTTTCAACCATGGTCTTATTCATTACCCAACTT
* * *** ** *
77844748 GATGCCATAGTGTCTTTTAACCATAGTCTTATTCATTTTACGTCGT
1 GATGCCATAGTGTCTTTCAACCATGGTCTTATTCATTACCCAACTT
* * * * * * *
77844794 GTTGCCATAATGTTTTTCAACTATGGTCTTATTCATT-TCCATCGT
1 GATGCCATAGTGTCTTTCAACCATGGTCTTATTCATTACCCAACTT
* * *
77844839 GTTACCATAGTGTCTTTCAACTATGGTCTTATT
1 GATGCCATAGTGTCTTTCAACCATGGTCTTATT
77844872 TGTTTGATTT
Statistics
Matches: 137, Mismatches: 32, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
45 66 0.48
46 71 0.52
ACGTcount: A:0.21, C:0.20, G:0.16, T:0.42
Consensus pattern (46 bp):
GATGCCATAGTGTCTTTCAACCATGGTCTTATTCATTACCCAACTT
Found at i:77844857 original size:45 final size:45
Alignment explanation
Indices: 77844659--77844871 Score: 187
Period size: 45 Copynumber: 4.7 Consensus size: 45
77844649 GGTTAAAGGA
* * ** * *
77844659 TGCCATGGTGTCTTTCAACCATGGTCTTAATCATAGCCGA-CTTGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTCC-ATCGTGT
** * * * *
77844704 TGTGATAGTGTCTTTCAACCATGGTTTTATTCATTCCCCAAT-TTGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTCATT-TCC-ATCGTGT
* * * *
77844750 TGCCATAGTGTCTTTTAACCATAGTCTTATTCATTTTACGTCGTGT
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTCA-TTTCCATCGTGT
* * *
77844796 TGCCATAATGTTTTTCAACTATGGTCTTATTCATTTCCATCGTGT
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTCCATCGTGT
* *
77844841 TACCATAGTGTCTTTCAACTATGGTCTTATT
1 TGCCATAGTGTCTTTCAACCATGGTCTTATT
77844872 TGTTTGATTT
Statistics
Matches: 136, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
45 68 0.50
46 66 0.49
47 2 0.01
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.43
Consensus pattern (45 bp):
TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTCCATCGTGT
Found at i:77844892 original size:45 final size:44
Alignment explanation
Indices: 77844747--77845004 Score: 178
Period size: 45 Copynumber: 5.7 Consensus size: 44
77844737 TTCCCCAATT
* * * * *
77844747 TGATGCCATAGTGTCTTTTAACCATAGTCTTATTCATTTTACGTCG
1 TGATGCCATAGTGTCTTTCAACTATGGTCTTATTCGTTTGA--TCG
* * * * *
77844793 TGTTGCCATAATGTTTTTCAACTATGGTCTTATTCATTTCCATCG
1 TGATGCCATAGTGTCTTTCAACTATGGTCTTATTCGTTT-GATCG
* * * *
77844838 TGTTACCATAGTGTCTTTCAACTATGGTCTTATTTGTTTGATTTG
1 TGATGCCATAGTGTCTTTCAACTATGGTCTTATTCGTTTGA-TCG
* * * * *
77844883 TGATGCCATA-TCTTCTTTCAGCTATGGTCTCATTCGATAGCATCG
1 TGATGCCATAGT-GTCTTTCAACTATGGTCTTATTCGTTTG-ATCG
* *** * * *
77844928 TGATGCCACAACATCTTTCAACTATGGTCTTACTCGTTT-CTGG
1 TGATGCCATAGTGTCTTTCAACTATGGTCTTATTCGTTTGATCG
* *
77844971 TATAGTGCCATAGTGCCTTTCAACTATGGTCTTA
1 T-GA-TGCCATAGTGTCTTTCAACTATGGTCTTA
77845005 ATAATTTCCT
Statistics
Matches: 166, Mismatches: 39, Indels: 15
0.75 0.18 0.07
Matches are distributed among these distances:
43 3 0.02
44 3 0.02
45 125 0.75
46 34 0.20
47 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.43
Consensus pattern (44 bp):
TGATGCCATAGTGTCTTTCAACTATGGTCTTATTCGTTTGATCG
Found at i:77850848 original size:7 final size:6
Alignment explanation
Indices: 77850798--77850854 Score: 53
Period size: 6 Copynumber: 9.3 Consensus size: 6
77850788 ACAAGTCTTT
* ***
77850798 AAAATA AACAT- AAAATA AAAATA AAAATA AAGCGA AAAATA AAAGATAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA-AT-A
77850847 AAAATA AA
1 AAAATA AA
77850855 TGGACTCAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
5 4 0.10
6 28 0.70
7 4 0.10
8 4 0.10
ACGTcount: A:0.77, C:0.04, G:0.05, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:77855143 original size:82 final size:82
Alignment explanation
Indices: 77855005--77855161 Score: 287
Period size: 82 Copynumber: 1.9 Consensus size: 82
77854995 TCTGGTCTAG
* * *
77855005 AATTGTTACCCATATAGTTGGCATGTTTGTTCGTAGTACTATGGTCGTAGGGTAGGCATTCTGGA
1 AATTGTTACCCATATAGTTGACATGTTTGTTCGTAGTACTATGGTCATAGGCTAGGCATTCTGGA
77855070 TTATTTATCCTTCCTCC
66 TTATTTATCCTTCCTCC
77855087 AATTGTTACCCATATAGTTGACATGTTTGTTCGTAGTACTATGGTCATAGGCTAGGCATTCTGGA
1 AATTGTTACCCATATAGTTGACATGTTTGTTCGTAGTACTATGGTCATAGGCTAGGCATTCTGGA
77855152 TTATTTATCC
66 TTATTTATCC
77855162 CTCATCCATT
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 72 1.00
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (82 bp):
AATTGTTACCCATATAGTTGACATGTTTGTTCGTAGTACTATGGTCATAGGCTAGGCATTCTGGA
TTATTTATCCTTCCTCC
Found at i:77874549 original size:39 final size:39
Alignment explanation
Indices: 77874506--77874723 Score: 303
Period size: 39 Copynumber: 5.6 Consensus size: 39
77874496 AACATGTTTT
* *
77874506 TGAGTATTGTGGTATATGCTTAAATGTTTTGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *
77874545 TGAGTATTTTGATATA-GCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *
77874583 TGAGAATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* * ** *
77874622 TGAGTATAGTGATATATGCTTGAACATTATGTTATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
77874661 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* * *
77874700 TGTGCAATGTGATATATGCTTAAA
1 TGAGTATTGTGATATATGCTTAAA
77874724 AGTGAATATG
Statistics
Matches: 159, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
38 34 0.21
39 125 0.79
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.45
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
Found at i:77874582 original size:22 final size:22
Alignment explanation
Indices: 77874557--77874621 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
77874547 AGTATTTTGA
77874557 TATAGCTTGAATGTTATGTGAT
1 TATAGCTTGAATGTTATGTGAT
*
77874579 TATA---TG-A-G-AATTGTGA-
1 TATAGCTTGAATGTTA-TGTGAT
77874595 TATATGCTTGAATGTTATGTGAT
1 TATA-GCTTGAATGTTATGTGAT
77874618 TATA
1 TATA
77874622 TGAGTATAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 17
0.63 0.04 0.33
Matches are distributed among these distances:
16 5 0.16
17 6 0.19
18 1 0.03
19 2 0.06
20 2 0.06
21 1 0.03
22 10 0.31
23 5 0.16
ACGTcount: A:0.31, C:0.03, G:0.22, T:0.45
Consensus pattern (22 bp):
TATAGCTTGAATGTTATGTGAT
Found at i:77877209 original size:37 final size:37
Alignment explanation
Indices: 77877159--77877234 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
77877149 GGTAACCAAG
77877159 ATGAGTATTTTCCAATTTTATTATACGCCATATTACT
1 ATGAGTATTTTCCAATTTTATTATACGCCATATTACT
*
77877196 ATGAGTATTTTCCAATTTTATTATACTCCATATTACT
1 ATGAGTATTTTCCAATTTTATTATACGCCATATTACT
77877233 AT
1 AT
77877235 CGTGACTACT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.30, C:0.16, G:0.07, T:0.47
Consensus pattern (37 bp):
ATGAGTATTTTCCAATTTTATTATACGCCATATTACT
Found at i:77887356 original size:37 final size:37
Alignment explanation
Indices: 77887306--77887384 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
77887296 TTATTACGAA
* *
77887306 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
77887343 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
77887380 GTCTT
1 GTCTT
77887385 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:77887581 original size:47 final size:47
Alignment explanation
Indices: 77887503--77888023 Score: 898
Period size: 47 Copynumber: 11.1 Consensus size: 47
77887493 CCCTTCGGGA
* * * * * * *
77887503 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77887550 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77887597 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77887644 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77887691 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77887738 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77887785 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77887832 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77887879 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77887926 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77887973 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77888020 CTTA
1 CTTA
77888024 CTATCATTTC
Statistics
Matches: 457, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 457 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:77893411 original size:19 final size:19
Alignment explanation
Indices: 77893387--77893425 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
77893377 AATTCATATC
77893387 TAAATCATTTATAACACAT
1 TAAATCATTTATAACACAT
77893406 TAAATCATTTATAACACAT
1 TAAATCATTTATAACACAT
77893425 T
1 T
77893426 CACTTCCGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (19 bp):
TAAATCATTTATAACACAT
Found at i:77894625 original size:18 final size:19
Alignment explanation
Indices: 77894602--77894637 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
77894592 CCCTAGGTTT
*
77894602 TCCTTTTTCTTT-TCTTTC
1 TCCTTTCTCTTTCTCTTTC
77894620 TCCTTTCTCTTTCTCTTT
1 TCCTTTCTCTTTCTCTTT
77894638 TTTGTTTCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (19 bp):
TCCTTTCTCTTTCTCTTTC
Found at i:77894673 original size:11 final size:11
Alignment explanation
Indices: 77894657--77894686 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
77894647 TATTCTATTC
77894657 TTTTTATTCTT
1 TTTTTATTCTT
77894668 TTTTTATTCTT
1 TTTTTATTCTT
*
77894679 TATTTATT
1 TTTTTATT
77894687 TATTTAGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTTATTCTT
Found at i:77903272 original size:48 final size:47
Alignment explanation
Indices: 77903197--77903427 Score: 256
Period size: 48 Copynumber: 4.9 Consensus size: 47
77903187 TAGGGTTATG
77903197 TGTGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATG-TTGGGACATGGCATTGGCATCGATA
* ** * * * * *
77903245 TGTAATTTCGTGTAAGATCATAGTTGGG-C-T---ATCGACATTGATA
1 TGTGATCCCATGTAAGACCAT-GTTGGGACATGGCATTGGCATCGATA
*
77903288 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATC
1 TGTGATCCCATGTAAGACCATGT-TGGGACATGGCATTGGCATCGATA
**
77903336 TACGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATG-TTGGGACATGGCATTGGCATCGATA
* * *
77903384 TGTGATCCCATGTAAGACCATATTCGAGATATGGCATTGGCATC
1 TGTGATCCCATGTAAGACCATGTT-GGGACATGGCATTGGCATC
77903428 CTACCATGTG
Statistics
Matches: 149, Mismatches: 25, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
42 2 0.01
43 30 0.20
44 1 0.01
45 1 0.01
46 1 0.01
47 3 0.02
48 109 0.73
49 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (47 bp):
TGTGATCCCATGTAAGACCATGTTGGGACATGGCATTGGCATCGATA
Found at i:77903352 original size:91 final size:93
Alignment explanation
Indices: 77903197--77903427 Score: 254
Period size: 91 Copynumber: 2.5 Consensus size: 93
77903187 TAGGGTTATG
** ** *
77903197 TGTGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATGTAATTTCGTGTAAGA
1 TGTGATCCCATGTAAGACCATG-TTGGGACATGGCATTGGCATCGATATACAATCCCATGTAAGA
* *
77903262 TCATAG-TTGGG-C-T-ATCGACATTGATA
65 CCAT-GTTTGGGACATGATCGACATCGATA
* *
77903288 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATCTACGATCCCATGTAAGA
1 TGTGATCCCATGTAAGACCATGT-TGGGACATGGCATTGGCATCGATATACAATCCCATGTAAGA
* *
77903353 CCATGTTTGGGACATGGCATTGGCATCGATA
65 CCATGTTTGGGACAT-G-ATCGACATCGATA
* * *
77903384 TGTGATCCCATGTAAGACCATATTCGAGATATGGCATTGGCATC
1 TGTGATCCCATGTAAGACCATGTT-GGGACATGGCATTGGCATC
77903428 CTACCATGTG
Statistics
Matches: 118, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
90 2 0.02
91 64 0.54
92 1 0.01
93 1 0.01
95 1 0.01
96 49 0.42
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (93 bp):
TGTGATCCCATGTAAGACCATGTTGGGACATGGCATTGGCATCGATATACAATCCCATGTAAGAC
CATGTTTGGGACATGATCGACATCGATA
Found at i:77906310 original size:27 final size:27
Alignment explanation
Indices: 77906279--77906456 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
77906269 TAAATTGTAC
*
77906279 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
77906306 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
77906332 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
77906360 GGCACTAAGTGTGCGAGCTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
77906388 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
77906415 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
77906442 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77906457 GACTCAAATA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:77906393 original size:82 final size:81
Alignment explanation
Indices: 77906280--77906435 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
77906270 AAATTGTACA
* * *
77906280 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGACTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
77906344 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
77906361 GCACTAAGTGTGCGAGCTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-CTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
77906426 TGCGAGTTGA
65 TGCGAATTGA
77906436 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGACTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:77906447 original size:82 final size:81
Alignment explanation
Indices: 77906276--77906456 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
77906266 GATTAAATTG
* * *
77906276 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGACTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
77906341 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
77906357 TGCGGCACTAAGTGTGCGAGCTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-CTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
77906421 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
77906439 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
77906457 GACTCAAATA
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGACTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:77914417 original size:27 final size:27
Alignment explanation
Indices: 77914386--77914563 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77914376 TAAATTGTAC
77914386 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
77914413 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77914439 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
77914467 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
77914495 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77914522 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
77914549 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77914564 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:77914500 original size:82 final size:81
Alignment explanation
Indices: 77914387--77914542 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
77914377 AAATTGTACA
* *
77914387 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
77914451 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
77914468 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
77914533 TGCGAGTTGA
65 TGCGAATTGA
77914543 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:77914554 original size:82 final size:81
Alignment explanation
Indices: 77914383--77914563 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
77914373 GATTAAATTG
* *
77914383 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
77914448 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
77914464 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
77914528 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
77914546 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
77914564 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:77916551 original size:53 final size:53
Alignment explanation
Indices: 77916469--77916945 Score: 555
Period size: 53 Copynumber: 8.9 Consensus size: 53
77916459 TTTTCTTTTT
* * * * * * *
77916469 TGAACTTACCATTACCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTA
1 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTA
** *
77916522 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCATTA
1 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTA
* * ** * *
77916575 AGTAACTCATCAATGTTATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA
1 TG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTA
77916629 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTA
1 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTA
** *
77916682 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTA
1 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTA
* * *
77916735 TAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA
1 T-G-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTA
** *
77916790 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGTCTTA
1 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTA
* * *
77916843 TAGTAACTCATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTA
1 T-G-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTA
* * * * *
77916898 TAGAACTTATCAATACCATGCTTTGGCACGGTCTTACATGATATCCTT
1 T-GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
77916946 ATCTTACCAA
Statistics
Matches: 363, Mismatches: 50, Indels: 21
0.84 0.12 0.05
Matches are distributed among these distances:
52 6 0.02
53 180 0.50
54 83 0.23
55 90 0.25
56 4 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (53 bp):
TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTA
Found at i:77916776 original size:108 final size:106
Alignment explanation
Indices: 77916469--77916937 Score: 557
Period size: 108 Copynumber: 4.4 Consensus size: 106
77916459 TTTTCTTTTT
* * * * * * *
77916469 TGAACTTACCATTACCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAA
1 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAA
* ** *
77916534 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCATTA
66 TGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTA
* * ** * * **
77916575 AGTAACTCATCAATGTTATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCA
1 TG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCA
*
77916640 ATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTA
65 ATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTA
* *
77916682 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATAGTAACTCAT
1 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCAC
*
77916746 CAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA
63 CAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTA
* *
77916790 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGTCTTATAGTAACTCAT
1 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCAC
*
77916854 CAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTA
63 CAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTA
* * * * *
77916898 TAGAACTTATCAATACCATGCTTTGGCACGGTCTTACATG
1 T-GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATG
77916938 ATATCCTTAT
Statistics
Matches: 324, Mismatches: 33, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
105 2 0.01
106 42 0.13
107 92 0.28
108 155 0.48
109 33 0.10
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (106 bp):
TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAA
TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTA
Found at i:77916808 original size:161 final size:161
Alignment explanation
Indices: 77916469--77916945 Score: 676
Period size: 161 Copynumber: 3.0 Consensus size: 161
77916459 TTTTCTTTTT
* * * * * *
77916469 TGAACTTACCATTACCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAA
1 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAA
* **
77916534 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCATTA-AGTAACTCATCAATGTTATGTCT
66 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCT
77916598 TGACATGGTCTTACATGATATCCTTGCCTTA
131 TGACATGGTCTTACATGATATCCTTGCCTTA
*
77916629 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAA
1 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAA
*
77916694 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAATGCCATGTCT
66 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCT
77916759 TGACATGGTCTTACATGATATCCTTGCCTTA
131 TGACATGGTCTTACATGATATCCTTGCCTTA
* * *
77916790 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGTCTTATAGTAACTCAT
1 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCCTTAT-G-AACTCAC
* *** * *
77916854 CAATGCCATGCCTTGACATGGTCTTACATGATTTCC-TTGCCTTATAG-AACTTATCAATACCAT
63 CAATGCCATGCCTTGGCATGGTCTTACATG-GGACCTTTGCCTTATAGTAACTCATCAATGCCAT
* *
77916917 G-CTTTGGCACGGTCTTACATGATATCCTT
127 GTC-TTGACATGGTCTTACATGATATCCTT
77916946 ATCTTACCAA
Statistics
Matches: 287, Mismatches: 24, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
160 99 0.34
161 101 0.35
162 40 0.14
163 45 0.16
164 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (161 bp):
TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAA
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCT
TGACATGGTCTTACATGATATCCTTGCCTTA
Found at i:77916979 original size:47 final size:48
Alignment explanation
Indices: 77916927--77917045 Score: 197
Period size: 47 Copynumber: 2.5 Consensus size: 48
77916917 GCTTTGGCAC
*
77916927 GGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAACAT-
1 GGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAACATA
*
77916974 GGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAACATA
1 GGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAACATA
*
77917022 GG-CTTACATGGTATCCTTCTCTTA
1 GGTCTTACATGGTATCCTTATCTTA
77917046 GTGCCAATGC
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
47 66 0.97
48 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.35
Consensus pattern (48 bp):
GGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAACATA
Found at i:77926100 original size:20 final size:20
Alignment explanation
Indices: 77926049--77926120 Score: 72
Period size: 20 Copynumber: 3.6 Consensus size: 20
77926039 TACAGGAGTC
*
77926049 ACACGCCCGTGCCGTTTGGG
1 ACACGCCCGTGTCGTTTGGG
**
77926069 ACACGCTTGTGTCGTTTGGG
1 ACACGCCCGTGTCGTTTGGG
* * **
77926089 ACACACCCGTGTCATTTGAC
1 ACACGCCCGTGTCGTTTGGG
*
77926109 ACATGCCCGTGT
1 ACACGCCCGTGT
77926121 GGACAAAATA
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.15, C:0.31, G:0.28, T:0.26
Consensus pattern (20 bp):
ACACGCCCGTGTCGTTTGGG
Found at i:77932420 original size:50 final size:50
Alignment explanation
Indices: 77932304--77932487 Score: 208
Period size: 50 Copynumber: 3.7 Consensus size: 50
77932294 CTGGTACGCA
*
77932304 TAGTAGCCTGCACTTAGTACTACACATGCGATC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAATTATCCGGTACACG
* * ** * *
77932353 TAGTAGCATGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAATTATCCGGTACACG
* * * * * * * *
77932403 TAGTAGCCTGAACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-TTATCCGGTACACG
*
77932454 TAGTAGCTTGCACTTAGTACTACACATGCGACCT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCT
77932488 CACAATAGAT
Statistics
Matches: 109, Mismatches: 24, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
49 30 0.28
50 43 0.39
51 36 0.33
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTAATTATCCGGTACACG
Found at i:77932474 original size:101 final size:99
Alignment explanation
Indices: 77932304--77932487 Score: 278
Period size: 101 Copynumber: 1.8 Consensus size: 99
77932294 CTGGTACGCA
* * *
77932304 TAGTAGCCTGCACTTAGTACTACACATGCGATCAATTATCCGGTACACGTAGTAGCATGCACTTA
1 TAGTAGCCTGAACTTAGTACTACACACGCGATCAATTATCCGGTACACATAGTAGCATGCACTTA
*
77932369 GTACTACACATGTGACCTAACCATCTGATACACG
66 GTACTACACATGCGACCTAACCATCTGATACACG
* * * *
77932403 TAGTAGCCTGAACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCTTGCACT
1 TAGTAGCCTGAACTTAGTACTACACACGCGATC-AA-TTATCCGGTACACATAGTAGCATGCACT
77932468 TAGTACTACACATGCGACCT
64 TAGTACTACACATGCGACCT
77932488 CACAATAGAT
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
99 30 0.40
100 2 0.03
101 43 0.57
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGAACTTAGTACTACACACGCGATCAATTATCCGGTACACATAGTAGCATGCACTTA
GTACTACACATGCGACCTAACCATCTGATACACG
Found at i:77933795 original size:19 final size:19
Alignment explanation
Indices: 77933771--77933807 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
77933761 AACTTTTGCA
*
77933771 CTTTTGACCAAATTGAGTC
1 CTTTTGACCAAATGGAGTC
77933790 CTTTTGACCAAATGGAGT
1 CTTTTGACCAAATGGAGT
77933808 GCCCAAACGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (19 bp):
CTTTTGACCAAATGGAGTC
Found at i:77935290 original size:15 final size:16
Alignment explanation
Indices: 77935261--77935294 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
77935251 AACAGAGAAG
77935261 CCAAGAATAAAGAAAT
1 CCAAGAATAAAGAAAT
77935277 CCAA-AATAAAGAAAT
1 CCAAGAATAAAGAAAT
77935292 CCA
1 CCA
77935295 TGATACGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.62, C:0.18, G:0.09, T:0.12
Consensus pattern (16 bp):
CCAAGAATAAAGAAAT
Found at i:77938139 original size:50 final size:50
Alignment explanation
Indices: 77938028--77938261 Score: 267
Period size: 50 Copynumber: 4.7 Consensus size: 50
77938018 CTGGTACGCA
* * ** * * *
77938028 TAGTAGCCTGCACGTAGTACTACACATGCGACC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACAAG
77938077 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACAAG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACAAG
* *
77938127 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACAAG
* * * ** * *
77938177 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGCATGC-A-
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CCATC-TG-ATACAAG
*
77938228 TAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT
77938262 CACAATAGAT
Statistics
Matches: 161, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
49 31 0.19
50 93 0.58
51 33 0.20
52 1 0.01
53 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACAAG
Found at i:77960377 original size:37 final size:37
Alignment explanation
Indices: 77960317--77960417 Score: 175
Period size: 37 Copynumber: 2.7 Consensus size: 37
77960307 AATAGTCCCA
* *
77960317 ACACATAGTTATCGGGTCTTACCCGGACAAAATCTCC
1 ACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCC
*
77960354 ACACGTAGTCATCGGGTCTTACCCGGACATAATCTCC
1 ACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCC
77960391 ACACGTAGTCATCGGGTCTTACCCGGA
1 ACACGTAGTCATCGGGTCTTACCCGGA
77960418 ACATATTTCC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
ACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCC
Found at i:77960619 original size:48 final size:48
Alignment explanation
Indices: 77960558--77961261 Score: 1129
Period size: 48 Copynumber: 15.0 Consensus size: 48
77960548 ATATACACAC
* *
77960558 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATAAACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
77960606 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77960654 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
77960702 ATCTCATACATATTTCACACTAGCCATTCGGCTTCACCACATATAAAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
77960750 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
77960798 ATCTCATACATATTTCACATTAGCCATTCGGCTTTA-C-C----AC--
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
77960838 A--T-ATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
77960883 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
77960931 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77960979 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77961027 A--TC-T-CATA---CACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
77961068 ATGTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
77961116 ATGTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77961164 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
77961212 ATATCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77961260 AT
1 AT
77961262 ATATTTATCT
Statistics
Matches: 616, Mismatches: 22, Indels: 36
0.91 0.03 0.05
Matches are distributed among these distances:
37 31 0.05
38 2 0.00
39 1 0.00
40 1 0.00
41 34 0.06
42 2 0.00
43 3 0.00
44 5 0.01
45 6 0.01
46 3 0.00
47 2 0.00
48 526 0.85
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:77960963 original size:181 final size:181
Alignment explanation
Indices: 77960659--77961213 Score: 975
Period size: 181 Copynumber: 3.0 Consensus size: 181
77960649 TACATATCTC
77960659 ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTA
1 ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTA
* * * *
77960724 GCCATTCGGCTTCACCACATATAAATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCA
66 GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCA
*
77960789 CATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT
131 CATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAT
* * *
77960840 ATACATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCACATTA
1 ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTA
77960905 GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCA
66 GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCA
*
77960970 CATATACACATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAT
131 CATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAT
*
77961021 ATACATATCTCATACACACTAGCCATTCGGCTTTACCACATATACATATGTCATACATATTTCAC
1 ATACATAT-T--T-CACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
*
77961086 ACTAGCCATTCGGCTTTACCACATATACATATGTCATACATATTTCACATTAGCCATTCGGCTTT
62 ACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTT
77961151 ACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAT
127 ACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAT
77961206 ATACATAT
1 ATACATAT
77961214 ATCATACATA
Statistics
Matches: 355, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
181 180 0.51
182 1 0.00
184 1 0.00
185 173 0.49
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (181 bp):
ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTA
GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCA
CATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAT
Found at i:77963107 original size:22 final size:23
Alignment explanation
Indices: 77963075--77963120 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
77963065 ATCACCCCTC
77963075 CCTTTTCATTTCT-TTATTACTAA
1 CCTTTTCATTT-TATTATTACTAA
*
77963098 CCTTTT-ATTTTATTATTTCTAA
1 CCTTTTCATTTTATTATTACTAA
77963120 C
1 C
77963121 ATAAAACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 1 0.05
22 14 0.67
23 6 0.29
ACGTcount: A:0.22, C:0.20, G:0.00, T:0.59
Consensus pattern (23 bp):
CCTTTTCATTTTATTATTACTAA
Found at i:77977019 original size:43 final size:43
Alignment explanation
Indices: 77976972--77977106 Score: 125
Period size: 43 Copynumber: 3.2 Consensus size: 43
77976962 TCCCGGACGT
*
77976972 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAA
1 GGTCTTACATGTAATTCAATATCGATGCCTATGTCCCAGACAA
* * * *
77977015 GGTCTTACACG-AAATCAGATA-CGATGCCAATGTCCCAGACAT
1 GGTCTTACATGTAATTCA-ATATCGATGCCTATGTCCCAGACAA
** * * *
77977057 GGTCTTATTTGTAAATTTC-A-ATCGAGGCCTGTGTCCCAGACAC
1 GGTCTTACATGT-AA-TTCAATATCGATGCCTATGTCCCAGACAA
77977100 GGTCTTA
1 GGTCTTA
77977107 TATGATGTCT
Statistics
Matches: 74, Mismatches: 13, Indels: 10
0.76 0.13 0.10
Matches are distributed among these distances:
42 32 0.43
43 38 0.51
44 2 0.03
45 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGTAATTCAATATCGATGCCTATGTCCCAGACAA
Found at i:77977051 original size:42 final size:43
Alignment explanation
Indices: 77976972--77977063 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 43
77976962 TCCCGGACGT
* * **
77976972 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAA
1 GGTCTTACACGTAAATCAATATCGATGCCAATGTCCCAGACAA
*
77977015 GGTCTTACACG-AAATCAGATA-CGATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAAATCA-ATATCGATGCCAATGTCCCAGACAA
77977057 GGTCTTA
1 GGTCTTA
77977064 TTTGTAAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 30 0.70
43 13 0.30
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (43 bp):
GGTCTTACACGTAAATCAATATCGATGCCAATGTCCCAGACAA
Found at i:78003690 original size:55 final size:55
Alignment explanation
Indices: 78003569--78003695 Score: 148
Period size: 55 Copynumber: 2.3 Consensus size: 55
78003559 GTGTTAATTG
* *
78003569 GGCAGGTTCGACCACGGGTGTTAGACACAGGTGTGTCGCACGCCCGTGCTGTTTT
1 GGCAGGTTCGACCACGGGTCTTAGACACAGGAGTGTCGCACGCCCGTGCTGTTTT
** ** * * * *
78003624 GGTTGACTCGACCATGGTTCTTCA-ACACGGGAGTGTCGCACGCCCGTGTTGTTTT
1 GGCAGGTTCGACCACGGGTCTT-AGACACAGGAGTGTCGCACGCCCGTGCTGTTTT
78003679 GGCAGGTTCGACCACGG
1 GGCAGGTTCGACCACGG
78003696 CTATATCACA
Statistics
Matches: 56, Mismatches: 15, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
55 55 0.98
56 1 0.02
ACGTcount: A:0.15, C:0.26, G:0.33, T:0.26
Consensus pattern (55 bp):
GGCAGGTTCGACCACGGGTCTTAGACACAGGAGTGTCGCACGCCCGTGCTGTTTT
Found at i:78007402 original size:14 final size:14
Alignment explanation
Indices: 78007383--78007421 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
78007373 TCAAAACAAG
78007383 AATTAAGAACACAT
1 AATTAAGAACACAT
78007397 AATTAAGAACACAT
1 AATTAAGAACACAT
*
78007411 AATTAAAAACA
1 AATTAAGAACA
78007422 AGTTAAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.62, C:0.13, G:0.05, T:0.21
Consensus pattern (14 bp):
AATTAAGAACACAT
Found at i:78008150 original size:26 final size:26
Alignment explanation
Indices: 78008081--78008143 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
78008071 TTTATCAATT
*
78008081 GGGAAGCTCACAAAGAGCCTTAAATC
1 GGGAAGCTCACAAAGAGCCATAAATC
* * *
78008107 GAGAAGCTGACGAAGAGCCATATAATC
1 GGGAAGCTCACAAAGAGCCATA-AATC
78008134 GGGAAGCTCA
1 GGGAAGCTCA
78008144 TAAGAGCTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 18 0.60
27 12 0.40
ACGTcount: A:0.38, C:0.21, G:0.27, T:0.14
Consensus pattern (26 bp):
GGGAAGCTCACAAAGAGCCATAAATC
Found at i:78012842 original size:25 final size:24
Alignment explanation
Indices: 78012806--78012882 Score: 68
Period size: 25 Copynumber: 3.2 Consensus size: 24
78012796 GTCATTAGGG
78012806 TTACCGAT--TCAGCTCATATGAGC
1 TTACCGATACTCAGCTCA-ATGAGC
* *
78012829 TTATCGATACTCAGCTTGAATGAGC
1 TTACCGATACTCAGC-TCAATGAGC
* * *
78012854 TTACCGTTATTTAGCTCAGATGAGC
1 TTACCGATACTCAGCTCA-ATGAGC
78012879 TTAC
1 TTAC
78012883 TGATTACAAC
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
23 7 0.16
24 2 0.05
25 32 0.74
26 2 0.05
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (24 bp):
TTACCGATACTCAGCTCAATGAGC
Found at i:78013141 original size:20 final size:23
Alignment explanation
Indices: 78013106--78013149 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 23
78013096 GATATATTGA
78013106 TATATGAAACAATTG-ATACATG
1 TATATGAAACAATTGAATACATG
78013128 TATATG-AA-AATTGAATACATG
1 TATATGAAACAATTGAATACATG
78013149 T
1 T
78013150 TGGATTCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 5 0.24
21 10 0.48
22 6 0.29
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (23 bp):
TATATGAAACAATTGAATACATG
Found at i:78013204 original size:45 final size:45
Alignment explanation
Indices: 78013154--78013243 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
78013144 ACATGTTGGA
*
78013154 TTCATCCATGTGTATTGGATTTTATATGTGATTTACTTGGCTAAT
1 TTCATCCATGTGTATTGGATTTTATATATGATTTACTTGGCTAAT
78013199 TTCATCCATGTGTATTGGATTTTATATATGATTTACTTGGCTAAT
1 TTCATCCATGTGTATTGGATTTTATATATGATTTACTTGGCTAAT
78013244 ATGTTGGTGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.23, C:0.11, G:0.17, T:0.49
Consensus pattern (45 bp):
TTCATCCATGTGTATTGGATTTTATATATGATTTACTTGGCTAAT
Found at i:78020859 original size:48 final size:48
Alignment explanation
Indices: 78020787--78021054 Score: 260
Period size: 48 Copynumber: 5.6 Consensus size: 48
78020777 ACAACAAGCT
* **
78020787 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGTT
1 GATG-CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCC
* * * *
78020836 GATGCATGTTCCAAACATGTCTTACACTAGCCTTCG--TA--TCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAG-CTT-GTATATCTCGAGGCC
* * * * *
78020882 GACGCATGTCCCAGACATGTCTTACATTGGCTTATATCTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCC
* * ** ** * *
78020930 GATACATGTCCTAGACATGTCTTACACTAGC-CCT-CGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCC
* * *
78020976 GATGCATGTCCCAGACATGTCTCACACTGGCTTGTATCTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCC
78021024 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
78021055 ACACATATCA
Statistics
Matches: 172, Mismatches: 39, Indels: 17
0.75 0.17 0.07
Matches are distributed among these distances:
45 3 0.02
46 65 0.38
47 2 0.01
48 94 0.55
49 7 0.04
50 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCC
Found at i:78020904 original size:94 final size:94
Alignment explanation
Indices: 78020792--78021054 Score: 384
Period size: 94 Copynumber: 2.8 Consensus size: 94
78020782 AAGCTGATGC
* * * ** *
78020792 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGTTGATGCATGTTCCAAACATGTC
1 CATGTCCCAGACATGTCTTACACTGGCTTGTATCTCTCGAGGCCGATGCATGTTCCAGACATGTC
*
78020857 TTACACTAGCCTTCGTATCAATGCCGACG
66 TTACACTAGCCCTCGTATCAATGCCGACG
* * *
78020886 CATGTCCCAGACATGTCTTACATTGGCTTATATCTCTCGAGGCCGATACATG-TCCTAGACATGT
1 CATGTCCCAGACATGTCTTACACTGGCTTGTATCTCTCGAGGCCGATGCATGTTCC-AGACATGT
* *
78020950 CTTACACTAGCCCTCGTCTCAATGCCGATG
65 CTTACACTAGCCCTCGTATCAATGCCGACG
* *
78020980 CATGTCCCAGACATGTCTCACACTGGCTTGTATCTCTCGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTGGCTTGTATCTCTCGAGGCCGATGCATGTTCCAGACATGTC
78021045 TTACACTAGC
66 TTACACTAGC
78021055 ACACATATCA
Statistics
Matches: 150, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
93 3 0.02
94 145 0.97
95 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTGGCTTGTATCTCTCGAGGCCGATGCATGTTCCAGACATGTC
TTACACTAGCCCTCGTATCAATGCCGACG
Found at i:78023366 original size:10 final size:10
Alignment explanation
Indices: 78023353--78023401 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
78023343 TATTATTTTG
78023353 TTTTATTTAA
1 TTTTATTTAA
*
78023363 TTTTA-TTAT
1 TTTTATTTAA
*
78023372 TTATTATTTAT
1 TT-TTATTTAA
78023383 TATTTATTTAA
1 T-TTTATTTAA
78023394 TTTTATTT
1 TTTTATTT
78023402 TATTAATTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 5 0.15
10 15 0.44
11 13 0.38
12 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (10 bp):
TTTTATTTAA
Found at i:78023376 original size:7 final size:7
Alignment explanation
Indices: 78023355--78023390 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
78023345 TTATTTTGTT
78023355 TTATTTA
1 TTATTTA
*
78023362 AT-TTTA
1 TTATTTA
78023368 TTATTTA
1 TTATTTA
78023375 TTATTTA
1 TTATTTA
78023382 TTATTTA
1 TTATTTA
78023389 TT
1 TT
78023391 TAATTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
6 5 0.19
7 21 0.81
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TTATTTA
Found at i:78023383 original size:14 final size:13
Alignment explanation
Indices: 78023345--78023391 Score: 58
Period size: 14 Copynumber: 3.5 Consensus size: 13
78023335 ATAGAAGATA
*
78023345 TTATTTTGTTTTAT
1 TTATTTT-TATTAT
*
78023359 TTAATTTTATTAT
1 TTATTTTTATTAT
78023372 TTATTATTTATTAT
1 TTATT-TTTATTAT
78023386 TTATTT
1 TTATTT
78023392 AATTTTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
13 10 0.34
14 19 0.66
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (13 bp):
TTATTTTTATTAT
Found at i:78023399 original size:14 final size:14
Alignment explanation
Indices: 78023354--78023410 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
78023344 ATTATTTTGT
78023354 TTTATTTAATTTTA
1 TTTATTTAATTTTA
78023368 -TTATTTATTATTTATTA
1 TTTATTTA--A-TT-TTA
78023385 TTTATTTAATTTTA
1 TTTATTTAATTTTA
78023399 TTT-TATTAATTT
1 TTTAT-TTAATTT
78023411 AGGTTAGGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 8 0.22
14 13 0.35
15 3 0.08
16 3 0.08
17 3 0.08
18 7 0.19
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTATTTAATTTTA
Found at i:78029971 original size:46 final size:46
Alignment explanation
Indices: 78029919--78030364 Score: 537
Period size: 46 Copynumber: 9.8 Consensus size: 46
78029909 GTGTGCTCTC
* * * *
78029919 TGATATGGAATGTGTAATACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
78029965 TGATATGAAATGTGTAAGACCATGGTTGAAACATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
78030011 TGATATGAAATGAGTAAGACCATGG-T------TACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
*** * * *
78030050 TGACGGGAAAATGAATAAGACTATGGTTGAAAGATACCATGGCAACG
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* *
78030097 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* *
78030143 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
*
78030189 TGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
78030235 TGACAGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
*** * *
78030282 TGACGGGAAAATGAATAAGACCATGGTTAAAAGATACCATGGCAACA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* ** * *
78030329 TGACAAAAAATGAGTAAAACCATAGTTGAAAGATAC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATAC
78030365 TATGACATCA
Statistics
Matches: 357, Mismatches: 34, Indels: 18
0.87 0.08 0.04
Matches are distributed among these distances:
39 16 0.04
40 16 0.04
41 1 0.00
45 1 0.00
46 220 0.62
47 103 0.29
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:78037392 original size:5 final size:5
Alignment explanation
Indices: 78037337--78037396 Score: 52
Period size: 5 Copynumber: 12.0 Consensus size: 5
78037327 ATAGAAGATA
* * * *
78037337 TTATT TTGTT TTATT TAATT TTATT ATT-TA TTA-T TTATT TAATT TTAATT
1 TTATT TTATT TTATT TTATT TTATT -TTATT TTATT TTATT TTATT TT-ATT
78037387 TTATT TTATT
1 TTATT TTATT
78037397 AATTTAGGTT
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
4 5 0.12
5 31 0.72
6 7 0.16
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (5 bp):
TTATT
Found at i:78037398 original size:20 final size:21
Alignment explanation
Indices: 78037339--78037401 Score: 74
Period size: 24 Copynumber: 2.9 Consensus size: 21
78037329 AGAAGATATT
*
78037339 ATTTTGTTTTATTTAATTTTA
1 ATTTTATTTTATTTAATTTTA
*
78037360 TTATTTATTATTTATTTAATTTTA
1 AT-TTTA-T-TTTATTTAATTTTA
78037384 ATTTTATTTTA-TTAATTT
1 ATTTTATTTTATTTAATTT
78037402 AGGTTAGGCT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
20 7 0.19
21 5 0.14
22 4 0.11
23 5 0.14
24 15 0.42
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (21 bp):
ATTTTATTTTATTTAATTTTA
Found at i:78040854 original size:142 final size:145
Alignment explanation
Indices: 78040643--78040902 Score: 334
Period size: 142 Copynumber: 1.8 Consensus size: 145
78040633 AGGTACCGAC
* * * *
78040643 GCCATGTCCGAGACATGGTCTTACACTGGATAGCACATCAAAGTCGATGCCATGTCCTAGACAAG
1 GCCATGTCCCAGACATGGTCTTACACTGGACAGCACAACAAAGTCGATGCCATGTCCCAGACAAG
*
78040708 TCTTACACTAACTT-TCATATATTGAGGCCAATACCATGTCCCAGACAGGTCTTATATTGGCTCT
66 TCTTACACTAACTTGT-ATATATCGAGGCCAATA-CATGTCCCAGACAGGTCTTATATTGGCTCT
78040772 CATTTATTAGTTTCGAT
129 CATTTATTAGTTTCGAT
* *
78040789 GCCATGTCCCAGACA-GGTCTTACACTGG-CA-CACAAC-AAG-CTGATGCCATGTCCCAGGCAG
1 GCCATGTCCCAGACATGGTCTTACACTGGACAGCACAACAAAGTC-GATGCCATGTCCCAGACAA
* * ** * *
78040849 GTCTTACACTAGCTTGTATATCTCGAGGCTGATACATGTCCTAGACATGTCTTA
65 GTCTTACACTAACTTGTATATATCGAGGCCAATACATGTCCCAGACAGGTCTTA
78040903 CACTAGCCCT
Statistics
Matches: 99, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
141 19 0.19
142 46 0.46
143 6 0.06
144 1 0.01
145 13 0.13
146 14 0.14
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (145 bp):
GCCATGTCCCAGACATGGTCTTACACTGGACAGCACAACAAAGTCGATGCCATGTCCCAGACAAG
TCTTACACTAACTTGTATATATCGAGGCCAATACATGTCCCAGACAGGTCTTATATTGGCTCTCA
TTTATTAGTTTCGAT
Found at i:78040902 original size:48 final size:46
Alignment explanation
Indices: 78040791--78040954 Score: 136
Period size: 46 Copynumber: 3.6 Consensus size: 46
78040781 GTTTCGATGC
* * * * * *
78040791 CATGTCCCAGACAGGTCTTACACTGGCACACA--ACAA-GCTGATGC
1 CATGTCCCAGACATGTCTTACACTAGCCCTCATCTCAAGGCTGAT-A
* * ** * *
78040835 CATGTCCCAGGCAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATA
1 CATGTCCCAGACATGTCTTACACTAGC-CCT-CATCTCAAGGCTGATA
* * * *
78040883 CATGTCCTAGACATGTCTTACACTAGCCCTCGTCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCCCTCATCTCAAGGCTGATA
78040929 CATGTCCCAGACATGTCTTACACTAG
1 CATGTCCCAGACATGTCTTACACTAG
78040955 AACACATATC
Statistics
Matches: 95, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
44 25 0.26
46 37 0.39
47 1 0.01
48 26 0.27
49 6 0.06
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCCCTCATCTCAAGGCTGATA
Found at i:78052944 original size:47 final size:46
Alignment explanation
Indices: 78052885--78053019 Score: 189
Period size: 47 Copynumber: 2.9 Consensus size: 46
78052875 TAGAATGGTT
* * * *
78052885 GAACATCCGAACTCGTTGAGTTGAATTCGAGTTCACTTATGGATGT
1 GAACGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* *
78052931 GAAATGTCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 G-AACGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* *
78052978 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78053020 GCGGGTTACA
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
46 38 0.49
47 40 0.51
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
GAACGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:78053010 original size:46 final size:47
Alignment explanation
Indices: 78052891--78053019 Score: 188
Period size: 46 Copynumber: 2.8 Consensus size: 47
78052881 GGTTGAACAT
* * * * *
78052891 CCGAACTCGTTGAGTTGAATTCGAGTTCACTTATGGATGTGAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAACGC
*
78052938 CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAACGC
*
78052984 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78053020 GCGGGTTACA
Statistics
Matches: 74, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
46 37 0.50
47 37 0.50
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (47 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAACGC
Found at i:78062964 original size:40 final size:40
Alignment explanation
Indices: 78062894--78063069 Score: 259
Period size: 40 Copynumber: 4.4 Consensus size: 40
78062884 AAACCAAGTA
* * *
78062894 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAGATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
78062933 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
78062973 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
78063013 CCTTCGGGACTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
78063053 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
78063070 AGTTACCATC
Statistics
Matches: 128, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
39 17 0.13
40 111 0.87
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:78073798 original size:46 final size:45
Alignment explanation
Indices: 78073726--78073900 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 45
78073716 TGTAACCCGC
78073726 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * * * *
78073772 CCATTAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * * **
78073818 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTTGAACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* *
78073865 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
78073901 ATGCTCAACC
Statistics
Matches: 100, Mismatches: 24, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
45 1 0.01
46 66 0.66
47 31 0.31
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:78073901 original size:93 final size:93
Alignment explanation
Indices: 78073734--78073904 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
78073724 GCCCATAAGT
** * * *
78073734 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATTAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
78073799 TGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
78073827 GAACTCGGACTCAACTCAACGAGTTTGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
78073892 CGAGTTCGGATGC
66 CGAGCTCGGATGC
78073905 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:78078694 original size:22 final size:21
Alignment explanation
Indices: 78078654--78078703 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
78078644 GCCTCCAGCG
78078654 CGCCTCCGTACGACCCCCTGCA
1 CGCCTCCGTACGACCCCCT-CA
* *
78078676 CGCCTCCGTATG-CCACCCTCG
1 CGCCTCCGTACGACC-CCCTCA
78078697 CGCCTCC
1 CGCCTCC
78078704 ATGTCGCCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.10, C:0.56, G:0.18, T:0.16
Consensus pattern (21 bp):
CGCCTCCGTACGACCCCCTCA
Found at i:78082827 original size:24 final size:24
Alignment explanation
Indices: 78082800--78082849 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
78082790 TTTCTTTTCT
78082800 TTGCATT-CATCCCATACATTTGCA
1 TTGCATTGCATCCCAT-CATTTGCA
**
78082824 TTGCATTGCATTGCATCATTTGCA
1 TTGCATTGCATCCCATCATTTGCA
78082848 TT
1 TT
78082850 AGATTTTCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.42
Consensus pattern (24 bp):
TTGCATTGCATCCCATCATTTGCA
Found at i:78085397 original size:5 final size:5
Alignment explanation
Indices: 78085384--78085428 Score: 56
Period size: 5 Copynumber: 9.0 Consensus size: 5
78085374 TGAGACCTTC
* *
78085384 AAAAA AAAAG AAAAAG AAAA- AGAAG AAAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG -AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
78085429 GAGAGGCCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
4 3 0.09
5 27 0.77
6 5 0.14
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:78085590 original size:30 final size:31
Alignment explanation
Indices: 78085564--78085622 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
78085554 GTAAATACTC
* * *
78085564 AAAATTTGAGGGGTTAA-AGTGTAAATATGA
1 AAAATTTGAAGGATCAATAGTGTAAATATGA
78085594 AAAATTTGAAGGATCAATAGTGTAAATAT
1 AAAATTTGAAGGATCAATAGTGTAAATAT
78085623 TTTAAGAGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.46, C:0.02, G:0.22, T:0.31
Consensus pattern (31 bp):
AAAATTTGAAGGATCAATAGTGTAAATATGA
Found at i:78085873 original size:11 final size:11
Alignment explanation
Indices: 78085859--78085911 Score: 54
Period size: 11 Copynumber: 4.9 Consensus size: 11
78085849 AGATAAATAT
78085859 TATTTTATTAA
1 TATTTTATTAA
*
78085870 TATTTTAATAA
1 TATTTTATTAA
* * *
78085881 GATATT-TTAT
1 TATTTTATTAA
*
78085891 TATTTTATTAT
1 TATTTTATTAA
78085902 TATTTTATTA
1 TATTTTATTA
78085912 GTATATAAAG
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
10 6 0.18
11 28 0.82
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:78088002 original size:46 final size:46
Alignment explanation
Indices: 78087964--78088130 Score: 255
Period size: 46 Copynumber: 3.6 Consensus size: 46
78087954 ATGAAATGTG
* *
78087964 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
*
78088010 TAAGACCATGGTTGAAAGATACCATGGCAATGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
*
78088056 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
* * *
78088101 GTAAGACCATAGTTGAAAGACACTATGGCA
1 -TAAGACCATGGTTGAAAGATACCATGGCA
78088131 TCACGTCAAA
Statistics
Matches: 112, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
45 8 0.07
46 104 0.93
ACGTcount: A:0.43, C:0.14, G:0.23, T:0.19
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
Found at i:78091806 original size:65 final size:64
Alignment explanation
Indices: 78091719--78091845 Score: 202
Period size: 65 Copynumber: 2.0 Consensus size: 64
78091709 TCATTCATAA
*
78091719 CACATCTAGTTAGGAGCATTTGATTCAT-TTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAACATTTGATTCATGTT-GATCATAGCATCCTAATTATTTGACATAAGCAT
* *
78091783 CACATCTTAGTTAGGAACTTTTGATTCATGTTGATCATAGCATCCTAATTATTTGGCATAAGC
1 CACATC-TAGTTAGGAACATTTGATTCATGTTGATCATAGCATCCTAATTATTTGACATAAGC
78091846 TTAGGCCTAT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
64 6 0.10
65 50 0.86
66 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (64 bp):
CACATCTAGTTAGGAACATTTGATTCATGTTGATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:78092108 original size:133 final size:133
Alignment explanation
Indices: 78091870--78094699 Score: 4231
Period size: 133 Copynumber: 21.3 Consensus size: 133
78091860 CCAATTCTAC
* * *** * *
78091870 AGATCTTGTCTCCATGAAGTTACGGTGGAGCAGATCGAAGATGGCGAATCTAGTCTTGCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* **
78091935 TACAGTGAAGCAGATTTAAGCCATTATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
78092000 TGT
131 TGT
* ** *
78092003 AGATCTTGTTTCCCTAAAGTTACAGTGGAGCAGATCGAAGACGGCGAATCTAGTATTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* *
78092068 TACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGCAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
78092133 TGT
131 TGT
* *
78092136 AGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
*
78092201 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
78092266 TGT
131 TGT
* * *
78092269 AGATCTTGTTTCCCTAAAGTTTTAGTGGAGCAGATCGAAGACGGTGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* *
78092334 TGCAATGAAGCAAATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
78092399 TGT
131 TGT
* * * * *
78092402 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGACGAATCTTGTCTTCCAGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* *
78092467 TGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
78092532 TGT
131 TGT
* * * * ** * * *
78092535 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCAAAAATAGTGAATCTTGTCTTCCTAAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* * * **
78092600 TGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCT-AAGTCGTAG-GGTAACAGGCTGAAGA
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGG-AGTAGGCTGAAGA
78092663 TTGT
130 TTGT
* * * *
78092667 AGATCTTGTTTCCCTAAAGTTGCAGTGGAGAAGATCAAAGACGGCGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
*
78092732 TACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
78092797 TGT
131 TGT
* *
78092800 AGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
*
78092865 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
78092930 TGT
131 TGT
* * * *
78092933 AGATCTTGTTTCCCTAAAGTTATAGTGGAGCAGATCGAAGATGGTGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
*
78092998 TGCAATGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
78093063 TGT
131 TGT
* * * *
78093066 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTTGTCTTCCAGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* *
78093131 TGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
78093196 TGT
131 TGT
* * ** * * *
78093199 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGATAGTGAATCTTGTCTTCCTAAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* * **
78093264 TGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCT-AA-TTCGTAG-GGTAACAGGCTGAAG
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTT-GTAGTGG-AGTAGGCTGAAG
78093326 ATTGT
129 ATTGT
* ** *
78093331 AGATCTTGTTTCCCTAAAGTTACAGTGGAGCAGATCGAAGACGGCGAATCTAGTATTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* *
78093396 TACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGCAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
78093461 TGT
131 TGT
* *
78093464 AGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
*
78093529 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
78093594 TGT
131 TGT
* * *
78093597 AGATCTTGTTTCCCTAAAGTTTTAGTGGAGCAGATCGAAGACGGTGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* *
78093662 TGCAATGAAGCAAATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
78093727 TGT
131 TGT
* * * * *
78093730 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGACGAATCTTGTCTTCCAGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* *
78093795 TGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
78093860 TGT
131 TGT
* * * * ** * * *
78093863 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCAAAAATAGTGAATCTTGTCTTCCTAAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* * * **
78093928 TGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCT-AAGTCGTAG-GGTAACAGGCTGAAGA
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGG-AGTAGGCTGAAGA
78093991 TTGT
130 TTGT
* * * *
78093995 AGATCTTGTTTCCCTAAAGTTGCAGTGGAGAAGATCAAAGACGGCGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
*
78094060 TACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
78094125 TGT
131 TGT
* *
78094128 AGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
*
78094193 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
78094258 TGT
131 TGT
* * * *
78094261 AGATCTTGTTTCCCTAAAGTTATAGTGGAGCAGATCGAAGATGGTGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
*
78094326 TGCAATGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
78094391 TGT
131 TGT
* * * *
78094394 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTTGTCTTCCAGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* *
78094459 TGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
78094524 TGT
131 TGT
* * ** * * *
78094527 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGATAGTGAATCTTGTCTTCCTAAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* * **
78094592 TGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCT-AA-TTCGTAG-GGTAACAGGCTGAAG
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTT-GTAGTGG-AGTAGGCTGAAG
78094654 ATTGT
129 ATTGT
* * * * *
78094659 AGATCTTGTCTCCCTAAAGTTGCAGTGGAGCAAATCAAAGA
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGA
78094700 AGCAAGCCTT
Statistics
Matches: 2464, Mismatches: 220, Indels: 27
0.91 0.08 0.01
Matches are distributed among these distances:
131 12 0.00
132 389 0.16
133 2055 0.83
134 8 0.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (133 bp):
AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
TGT
Found at i:78092416 original size:45 final size:45
Alignment explanation
Indices: 78092366--78094690 Score: 379
Period size: 45 Copynumber: 52.5 Consensus size: 45
78092356 ACCATCCTAG
* *
78092366 CTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTAGATCTTGT
* * *
78092411 CTCCCTGAAGTTGTAGTGGAGCA-AATCGAAGA-CG-ACGAATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACT-GAAGATTGTA-G-ATCTTGT
* * * * * **** *
78092456 CTTCC-AGAAGTTGCAGTGAAGCAGATTTAAGCCACT--ATCCTAG-
1 CTCCCTA-AAGTTGTAGTGGAGCAGACTGAAGATTGTAGAT-CTTGT
* * *
78092499 CTCCCTAAAGTTGGAGTGGAGTAGGCTGAAGATTGTAGATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTAGATCTTGT
* * * * *
78092544 CTCCCTGAAGTTGTAGTGGAGCA-AATCAAAAATAGT-GAATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACT-GAAGATTGTAG-ATCTTGT
* * * * * ** * **
78092589 CTTCCTAAAGTTGCAGTGAAGCAGATTTAAG---CCACCATCTTAA
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTA-GATCTTGT
* * *
78092632 CTCCCT-AAGTCGTAG-GGTAACAGGCTGAAGATTGTAGATCTTGT
1 CTCCCTAAAGTTGTAGTGG-AGCAGACTGAAGATTGTAGATCTTGT
* * * * * ** *
78092676 TTCCCTAAAGTTGCAGTGGAGAAGA-TCAAAGA-CGGCGAATCTAGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACT-GAAGATTGTAG-ATCTTGT
* * ** * * * ** * *
78092721 CTTCCTGAAGTTACAGTGAAGCAGATTTAAG---CCACCATCCTAG-
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTA-GAT-CTTGT
* *
78092764 CTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTAGATCTTGT
* * * * * ** *
78092809 TTCCCTGAAGTTGCAGTAGAGCAGA-TCGAAGA-CGGCGAATCTAGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACT-GAAGATTGTAG-ATCTTGT
* * * * * * ** * *
78092854 CTTCCTGAAGTTGCAGTGAAGCAGATTTAAG---CCACCATCCTAG-
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTA-GAT-CTTGT
* **
78092897 CTCCCTAAAGTTGTAGTGGAGTAGGTTGAAGATTGTAGATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTAGATCTTGT
* * * *
78092942 TTCCCTAAAGTTATAGTGGAGCAGA-TCGAAGATGGT-GAATCTAGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACT-GAAGATTGTAG-ATCTTGT
* * * * * * * ** * *
78092987 CTTCCTGAAGTTGCAATGAAGCAGATTTAAG---CCACCATCCTAG-
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTA-GAT-CTTGT
* *
78093030 CTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTAGATCTTGT
* * * **
78093075 CTCCCTGAAGTTGTAGTGGAGCA-AATCGAAGA-CGGCGAATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACT-GAAGATTGTAG-ATCTTGT
* * * * * **** *
78093120 CTTCC-AGAAGTTGCAGTGAAGCAGATTTAAGCCACT--ATCCTAG-
1 CTCCCTA-AAGTTGTAGTGGAGCAGACTGAAGATTGTAGAT-CTTGT
* * *
78093163 CTCCCTAAAGTTGGAGTGGAGTAGGCTGAAGATTGTAGATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTAGATCTTGT
* * *
78093208 CTCCCTGAAGTTGTAGTGGAGCA-AATCGAAGATAGT-GAATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACT-GAAGATTGTAG-ATCTTGT
* * * * * ** * **
78093253 CTTCCTAAAGTTGCAGTGAAGCAGATTTAAG---CCACCATCTTAA
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTA-GATCTTGT
* *
78093296 CTCCCT-AA-TTCGTAG-GGTAACAGGCTGAAGATTGTAGATCTTGT
1 CTCCCTAAAGTT-GTAGTGG-AGCAGACTGAAGATTGTAGATCTTGT
* ** * ** *
78093340 TTCCCTAAAGTTACAGTGGAGCAGA-TCGAAGA-CGGCGAATCTAGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACT-GAAGATTGTAG-ATCTTGT
* * * ** * * * ** * *
78093385 ATTCCTGAAGTTACAGTGAAGCAGATTTAAG---CCACCATCCTAG-
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTA-GAT-CTTGT
* * *
78093428 CTCCCTAAAGTTGTAGTGGAGTAGGCTGCAGATTGTAGATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTAGATCTTGT
* * * * * ** *
78093473 TTCCCTGAAGTTGCAGTAGAGCAGA-TCGAAGA-CGGCGAATCTAGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACT-GAAGATTGTAG-ATCTTGT
* * * * * * ** * *
78093518 CTTCCTGAAGTTGCAGTGAAGCAGATTTAAG---CCACCATCCTAG-
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTA-GAT-CTTGT
* * *
78093561 CTCCCTAAAGTTGTAGTGGAGTAGGCTAAAGATTGTAGATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTAGATCTTGT
* * ** *
78093606 TTCCCTAAAGTTTTAGTGGAGCAGA-TCGAAGACGGT-GAATCTAGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACT-GAAGATTGTAG-ATCTTGT
* * * * * * * * ** * *
78093651 CTTCCTGAAGTTGCAATGAAGCAAATTTAAG---CCACCATCCTAG-
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTA-GAT-CTTGT
* *
78093694 CTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTAGATCTTGT
* * *
78093739 CTCCCTGAAGTTGTAGTGGAGCA-AATCGAAGA-CG-ACGAATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACT-GAAGATTGTA-G-ATCTTGT
* * * * * **** *
78093784 CTTCC-AGAAGTTGCAGTGAAGCAGATTTAAGCCACT--ATCCTAG-
1 CTCCCTA-AAGTTGTAGTGGAGCAGACTGAAGATTGTAGAT-CTTGT
* * *
78093827 CTCCCTAAAGTTGGAGTGGAGTAGGCTGAAGATTGTAGATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTAGATCTTGT
* * * * *
78093872 CTCCCTGAAGTTGTAGTGGAGCA-AATCAAAAATAGT-GAATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACT-GAAGATTGTAG-ATCTTGT
* * * * * ** * **
78093917 CTTCCTAAAGTTGCAGTGAAGCAGATTTAAG---CCACCATCTTAA
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTA-GATCTTGT
* * *
78093960 CTCCCT-AAGTCGTAG-GGTAACAGGCTGAAGATTGTAGATCTTGT
1 CTCCCTAAAGTTGTAGTGG-AGCAGACTGAAGATTGTAGATCTTGT
* * * * * ** *
78094004 TTCCCTAAAGTTGCAGTGGAGAAGA-TCAAAGA-CGGCGAATCTAGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACT-GAAGATTGTAG-ATCTTGT
* * ** * * * ** * *
78094049 CTTCCTGAAGTTACAGTGAAGCAGATTTAAG---CCACCATCCTAG-
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTA-GAT-CTTGT
* *
78094092 CTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTAGATCTTGT
* * * * * ** *
78094137 TTCCCTGAAGTTGCAGTAGAGCAGA-TCGAAGA-CGGCGAATCTAGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACT-GAAGATTGTAG-ATCTTGT
* * * * * * ** * *
78094182 CTTCCTGAAGTTGCAGTGAAGCAGATTTAAG---CCACCATCCTAG-
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTA-GAT-CTTGT
* **
78094225 CTCCCTAAAGTTGTAGTGGAGTAGGTTGAAGATTGTAGATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTAGATCTTGT
* * * *
78094270 TTCCCTAAAGTTATAGTGGAGCAGA-TCGAAGATGGT-GAATCTAGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACT-GAAGATTGTAG-ATCTTGT
* * * * * * * ** * *
78094315 CTTCCTGAAGTTGCAATGAAGCAGATTTAAG---CCACCATCCTAG-
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTA-GAT-CTTGT
* *
78094358 CTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTAGATCTTGT
* * * **
78094403 CTCCCTGAAGTTGTAGTGGAGCA-AATCGAAGA-CGGCGAATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACT-GAAGATTGTAG-ATCTTGT
* * * * * **** *
78094448 CTTCC-AGAAGTTGCAGTGAAGCAGATTTAAGCCACT--ATCCTAG-
1 CTCCCTA-AAGTTGTAGTGGAGCAGACTGAAGATTGTAGAT-CTTGT
* * *
78094491 CTCCCTAAAGTTGGAGTGGAGTAGGCTGAAGATTGTAGATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTAGATCTTGT
* * *
78094536 CTCCCTGAAGTTGTAGTGGAGCA-AATCGAAGATAGT-GAATCTTGT
1 CTCCCTAAAGTTGTAGTGGAGCAGACT-GAAGATTGTAG-ATCTTGT
* * * * * ** * **
78094581 CTTCCTAAAGTTGCAGTGAAGCAGATTTAAG---CCACCATCTTAA
1 CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTA-GATCTTGT
* *
78094624 CTCCCT-AA-TTCGTAG-GGTAACAGGCTGAAGATTGTAGATCTTGT
1 CTCCCTAAAGTT-GTAGTGG-AGCAGACTGAAGATTGTAGATCTTGT
*
78094668 CTCCCTAAAGTTGCAGTGGAGCA
1 CTCCCTAAAGTTGTAGTGGAGCA
78094691 AATCAAAGAA
Statistics
Matches: 1575, Mismatches: 529, Indels: 352
0.64 0.22 0.14
Matches are distributed among these distances:
41 8 0.01
42 56 0.04
43 360 0.23
44 176 0.11
45 929 0.59
46 46 0.03
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (45 bp):
CTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATTGTAGATCTTGT
Found at i:78093257 original size:664 final size:664
Alignment explanation
Indices: 78091870--78094699 Score: 5196
Period size: 664 Copynumber: 4.3 Consensus size: 664
78091860 CCAATTCTAC
* *** * * * * * *
78091870 AGATCTTGTCTCCATGAAGTTACGGTGGAGCAGATCGAAGATGGCGAATCTAGTCTTGCTGAAGT
1 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGATAGTGAATCTTGTCTTCCTAAAGT
* ** * * * **
78091935 TACAGTGAAGCAGATTTAAGCCATTATCCTAGCTCCCTAAAGTTGTAGTGG-AGTAGGCTGAAGA
66 TGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCT-AAGTCGTAG-GGTAACAGGCTGAAGA
* * *
78091999 TTGTAGATCTTGTTTCCCTAAAGTTACAGTGGAGCAGATCGAAGACGGCGAATCTAGTATTCCTG
129 TTGTAGATCTTGTTTCCCTAAAGTTGCAGTGGAGAAGATCAAAGACGGCGAATCTAGTATTCCTG
*
78092064 AAGTTACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGC
194 AAGTTACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGA
78092129 AGATTGTAGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTC
259 AGATTGTAGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTC
78092194 CTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGC
324 CTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGC
*
78092259 TAAAGATTGTAGATCTTGTTTCCCTAAAGTTTTAGTGGAGCAGATCGAAGACGGTGAATCTAGTC
389 TAAAGATTGTAGATCTTGTTTCCCTAAAGTTATAGTGGAGCAGATCGAAGACGGTGAATCTAGTC
78092324 TTCCTGAAGTTGCAATGAAGCAAATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTA
454 TTCCTGAAGTTGCAATGAAGCAAATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTA
78092389 GGCTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGACGAATCTT
519 GGCTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGACGAATCTT
78092454 GTCTTCCAGAAGTTGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGA
584 GTCTTCCAGAAGTTGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGA
78092519 GTAGGCTGAAGATTGT
649 GTAGGCTGAAGATTGT
* *
78092535 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCAAAAATAGTGAATCTTGTCTTCCTAAAGT
1 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGATAGTGAATCTTGTCTTCCTAAAGT
78092600 TGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCTAAGTCGTAGGGTAACAGGCTGAAGATT
66 TGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCTAAGTCGTAGGGTAACAGGCTGAAGATT
*
78092665 GTAGATCTTGTTTCCCTAAAGTTGCAGTGGAGAAGATCAAAGACGGCGAATCTAGTCTTCCTGAA
131 GTAGATCTTGTTTCCCTAAAGTTGCAGTGGAGAAGATCAAAGACGGCGAATCTAGTATTCCTGAA
78092730 GTTACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAG
196 GTTACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAG
78092795 ATTGTAGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCCT
261 ATTGTAGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCCT
* *
78092860 GAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTG
326 GAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTA
*
78092925 AAGATTGTAGATCTTGTTTCCCTAAAGTTATAGTGGAGCAGATCGAAGATGGTGAATCTAGTCTT
391 AAGATTGTAGATCTTGTTTCCCTAAAGTTATAGTGGAGCAGATCGAAGACGGTGAATCTAGTCTT
*
78092990 CCTGAAGTTGCAATGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
456 CCTGAAGTTGCAATGAAGCAAATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
*
78093055 CTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTTGT
521 CTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGACGAATCTTGT
78093120 CTTCCAGAAGTTGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAGT
586 CTTCCAGAAGTTGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAGT
78093185 AGGCTGAAGATTGT
651 AGGCTGAAGATTGT
78093199 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGATAGTGAATCTTGTCTTCCTAAAGT
1 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGATAGTGAATCTTGTCTTCCTAAAGT
*
78093264 TGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCTAATTCGTAGGGTAACAGGCTGAAGATT
66 TGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCTAAGTCGTAGGGTAACAGGCTGAAGATT
* * *
78093329 GTAGATCTTGTTTCCCTAAAGTTACAGTGGAGCAGATCGAAGACGGCGAATCTAGTATTCCTGAA
131 GTAGATCTTGTTTCCCTAAAGTTGCAGTGGAGAAGATCAAAGACGGCGAATCTAGTATTCCTGAA
*
78093394 GTTACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGCAG
196 GTTACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAG
78093459 ATTGTAGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCCT
261 ATTGTAGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCCT
78093524 GAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTA
326 GAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTA
*
78093589 AAGATTGTAGATCTTGTTTCCCTAAAGTTTTAGTGGAGCAGATCGAAGACGGTGAATCTAGTCTT
391 AAGATTGTAGATCTTGTTTCCCTAAAGTTATAGTGGAGCAGATCGAAGACGGTGAATCTAGTCTT
78093654 CCTGAAGTTGCAATGAAGCAAATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
456 CCTGAAGTTGCAATGAAGCAAATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
78093719 CTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGACGAATCTTGT
521 CTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGACGAATCTTGT
78093784 CTTCCAGAAGTTGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAGT
586 CTTCCAGAAGTTGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAGT
78093849 AGGCTGAAGATTGT
651 AGGCTGAAGATTGT
* *
78093863 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCAAAAATAGTGAATCTTGTCTTCCTAAAGT
1 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGATAGTGAATCTTGTCTTCCTAAAGT
78093928 TGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCTAAGTCGTAGGGTAACAGGCTGAAGATT
66 TGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCTAAGTCGTAGGGTAACAGGCTGAAGATT
*
78093993 GTAGATCTTGTTTCCCTAAAGTTGCAGTGGAGAAGATCAAAGACGGCGAATCTAGTCTTCCTGAA
131 GTAGATCTTGTTTCCCTAAAGTTGCAGTGGAGAAGATCAAAGACGGCGAATCTAGTATTCCTGAA
78094058 GTTACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAG
196 GTTACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAG
78094123 ATTGTAGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCCT
261 ATTGTAGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCCT
* *
78094188 GAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTG
326 GAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTA
*
78094253 AAGATTGTAGATCTTGTTTCCCTAAAGTTATAGTGGAGCAGATCGAAGATGGTGAATCTAGTCTT
391 AAGATTGTAGATCTTGTTTCCCTAAAGTTATAGTGGAGCAGATCGAAGACGGTGAATCTAGTCTT
*
78094318 CCTGAAGTTGCAATGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
456 CCTGAAGTTGCAATGAAGCAAATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
*
78094383 CTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTTGT
521 CTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGACGAATCTTGT
78094448 CTTCCAGAAGTTGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAGT
586 CTTCCAGAAGTTGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAGT
78094513 AGGCTGAAGATTGT
651 AGGCTGAAGATTGT
78094527 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGATAGTGAATCTTGTCTTCCTAAAGT
1 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGATAGTGAATCTTGTCTTCCTAAAGT
*
78094592 TGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCTAATTCGTAGGGTAACAGGCTGAAGATT
66 TGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCTAAGTCGTAGGGTAACAGGCTGAAGATT
*
78094657 GTAGATCTTGTCTCCCTAAAGTTGCAGTGGAGCAA-ATCAAAGA
131 GTAGATCTTGTTTCCCTAAAGTTGCAGTGGAG-AAGATCAAAGA
78094700 AGCAAGCCTT
Statistics
Matches: 2100, Mismatches: 63, Indels: 5
0.97 0.03 0.00
Matches are distributed among these distances:
663 2 0.00
664 2010 0.96
665 88 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (664 bp):
AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGATAGTGAATCTTGTCTTCCTAAAGT
TGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCTAAGTCGTAGGGTAACAGGCTGAAGATT
GTAGATCTTGTTTCCCTAAAGTTGCAGTGGAGAAGATCAAAGACGGCGAATCTAGTATTCCTGAA
GTTACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAG
ATTGTAGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCCT
GAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTA
AAGATTGTAGATCTTGTTTCCCTAAAGTTATAGTGGAGCAGATCGAAGACGGTGAATCTAGTCTT
CCTGAAGTTGCAATGAAGCAAATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
CTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGACGAATCTTGT
CTTCCAGAAGTTGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAGT
AGGCTGAAGATTGT
Found at i:78093463 original size:797 final size:797
Alignment explanation
Indices: 78091870--78094699 Score: 4309
Period size: 797 Copynumber: 3.6 Consensus size: 797
78091860 CCAATTCTAC
* * * * * *
78091870 AGATCTTGTCTCCATGAAGTTACGGTGGAGCAGATCGAAGATGGCGAATCTAGTCTTGCTGAAGT
1 AGATCTTGTTTCCCTAAAGTTACAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
**
78091935 TACAGTGAAGCAGATTTAAGCCATTATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
66 TACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
* *
78092000 TGTAGATCTTGTTTCCCTAAAGTTACAGTGGAGCAGATCGAAGACGGCGAATCTAGTATTCCTGA
131 TGTAGATCTTGTTTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGA
* *
78092065 AGTTACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGCA
196 AGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAA
* * * *
78092130 GATTGTAGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCC
261 GATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTAGTCTTCC
78092195 TGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT
326 TGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT
* * * * * *
78092260 AAAGATTGTAGATCTTGTTTCCCTAAAGTTTTAGTGGAGCAGATCGAAGACGGTGAATCTAGTCT
391 GAAGATTGTAGATCTTGTCTCCCTAAAGTTGTAGTGGAGCAAATCAAAGACGGTGAATCTTGTCT
* * *
78092325 TCCTGAAGTTGCAATGAAGCAAATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAG
456 TCCAGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAG
*
78092390 GCTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGACGAATCTTG
521 GCTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGAAG-CGAATCTTG
* *
78092455 TCTTCC-AGAAGTTGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGA
585 TCTTCCTA-AAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGA
* * * * * ** *
78092519 GTAGGCTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCAAAAATAGTGAAT
649 GTAGGCTGAAGATTGTAGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAAT
* * * * *
78092584 CTTGTCTTCCTAAAGTTGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCT-AAGTCGTAG-
714 CTAGTCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGT
**
78092647 GGTAACAGGCTGAAGATTGT
779 GG-AGTAGGCTGAAGATTGT
* * *
78092667 AGATCTTGTTTCCCTAAAGTTGCAGTGGAGAAGATCAAAGACGGCGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTTTCCCTAAAGTTACAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
78092732 TACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
66 TACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
* *
78092797 TGTAGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGA
131 TGTAGATCTTGTTTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGA
*
78092862 AGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAA
196 AGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAA
* * * * * *
78092927 GATTGTAGATCTTGTTTCCCTAAAGTTATAGTGGAGCAGATCGAAGATGGTGAATCTAGTCTTCC
261 GATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTAGTCTTCC
*
78092992 TGAAGTTGCAATGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT
326 TGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT
* * *
78093057 GAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTTGTCT
391 GAAGATTGTAGATCTTGTCTCCCTAAAGTTGTAGTGGAGCAAATCAAAGACGGTGAATCTTGTCT
* *
78093122 TCCAGAAGTTGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAGTAG
456 TCCAGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAG
*
78093187 GCTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGATAGTGAATCTTG
521 GCTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGA-AGCGAATCTTG
* *
78093252 TCTTCCTAAAGTTGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCT-AA-TTCGTAG-GGT
585 TCTTCCTAAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTT-GTAGTGG-
** * *
78093314 AACAGGCTGAAGATTGTAGATCTTGTTTCCCTAAAGTTACAGTGGAGCAGATCGAAGACGGCGAA
648 AGTAGGCTGAAGATTGTAGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAA
* *
78093379 TCTAGTATTCCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAG
713 TCTAGTCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAG
*
78093444 TGGAGTAGGCTGCAGATTGT
778 TGGAGTAGGCTGAAGATTGT
* * *
78093464 AGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTTTCCCTAAAGTTACAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* *
78093529 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAGAT
66 TACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
** *
78093594 TGTAGATCTTGTTTCCCTAAAGTTTTAGTGGAGCAGATCGAAGACGGTGAATCTAGTCTTCCTGA
131 TGTAGATCTTGTTTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGA
* *
78093659 AGTTGCAATGAAGCAAATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAA
196 AGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAA
* *
78093724 GATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGACGAATCTTGTCTTCC
261 GATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTAGTCTTCC
* * *
78093789 AGAAGTTGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAGTAGGCT
326 TGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT
* * **
78093854 GAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCAAAAATAGTGAATCTTGTCT
391 GAAGATTGTAGATCTTGTCTCCCTAAAGTTGTAGTGGAGCAAATCAAAGACGGTGAATCTTGTCT
* * * **
78093919 TCCTA-AAGTTGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCT-AAGTCGTAG-GGTAAC
456 TCC-AGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGG-AGT
* * * * *
78093981 AGGCTGAAGATTGTAGATCTTGTTTCCCTAAAGTTGCAGTGGAG-AAGATCAAAGACGGCGAATC
519 AGGCTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAA-ATCGAAGA-AGCGAATC
* * *
78094045 TAGTCTTCCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTG
582 TTGTCTTCCTAAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTG
*
78094110 GAGTAGGCTGAAGATTGTAGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGA
647 GAGTAGGCTGAAGATTGTAGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGA
78094175 ATCTAGTCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTA
712 ATCTAGTCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTA
*
78094240 GTGGAGTAGGTTGAAGATTGT
777 GTGGAGTAGGCTGAAGATTGT
* * *
78094261 AGATCTTGTTTCCCTAAAGTTATAGTGGAGCAGATCGAAGATGGTGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTTTCCCTAAAGTTACAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* *
78094326 TGCAATGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
66 TACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
* * * * * *
78094391 TGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTTGTCTTCCAGA
131 TGTAGATCTTGTTTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGA
* *
78094456 AGTTGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAGTAGGCTGAA
196 AGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAA
** * *
78094521 GATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGATAGTGAATCTTGTCTTCC
261 GATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTAGTCTTCC
* * * **
78094586 TAAAGTTGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCT-AA-TTCGTAG-GGTAACAGG
326 TGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTT-GTAGTGG-AGTAGG
*
78094648 CTGAAGATTGTAGATCTTGTCTCCCTAAAGTTGCAGTGGAGCAAATCAAAGA
389 CTGAAGATTGTAGATCTTGTCTCCCTAAAGTTGTAGTGGAGCAAATCAAAGA
78094700 AGCAAGCCTT
Statistics
Matches: 1861, Mismatches: 158, Indels: 29
0.91 0.08 0.01
Matches are distributed among these distances:
795 12 0.01
796 275 0.15
797 1565 0.84
798 9 0.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (797 bp):
AGATCTTGTTTCCCTAAAGTTACAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
TACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
TGTAGATCTTGTTTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGA
AGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAA
GATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTAGTCTTCC
TGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT
GAAGATTGTAGATCTTGTCTCCCTAAAGTTGTAGTGGAGCAAATCAAAGACGGTGAATCTTGTCT
TCCAGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAG
GCTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGAAGCGAATCTTGT
CTTCCTAAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGT
AGGCTGAAGATTGTAGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCT
AGTCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGG
AGTAGGCTGAAGATTGT
Found at i:78094665 original size:87 final size:88
Alignment explanation
Indices: 78094574--78094770 Score: 254
Period size: 88 Copynumber: 2.2 Consensus size: 88
78094564 AAGATAGTGA
* * ** * * * * * *
78094574 ATCTTGTCTTCCTAAAGTTGCAGTGAAGCAGATTTAAGCCA-CCA-TCTTAACTCCCTAATTCGT
1 ATCTTGTCTCCCTAAAGTTGCAGTGAAGCAAATCAAAG-AAGCAAGCCTTAACTCCCAAAGTCAT
78094637 AGGGTAACAGGCTGAAGATTGTAG
65 AGGGTAACAGGCTGAAGATTGTAG
*
78094661 ATCTTGTCTCCCTAAAGTTGCAGTGGAGCAAATCAAAGAAGCAAGCCTTAACTCCCAAAGTCATA
1 ATCTTGTCTCCCTAAAGTTGCAGTGAAGCAAATCAAAGAAGCAAGCCTTAACTCCCAAAGTCATA
*
78094726 GGGTGACAGGCTGAAGATTGTAG
66 GGGTAACAGGCTGAAGATTGTAG
*
78094749 ATCTTGTCTCCCTGAAGTTGCA
1 ATCTTGTCTCCCTAAAGTTGCA
78094771 TTGGAGTAGT
Statistics
Matches: 95, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
86 1 0.01
87 35 0.37
88 59 0.62
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (88 bp):
ATCTTGTCTCCCTAAAGTTGCAGTGAAGCAAATCAAAGAAGCAAGCCTTAACTCCCAAAGTCATA
GGGTAACAGGCTGAAGATTGTAG
Found at i:78094779 original size:531 final size:528
Alignment explanation
Indices: 78091870--78094699 Score: 3902
Period size: 531 Copynumber: 5.3 Consensus size: 528
78091860 CCAATTCTAC
* * *** * * *
78091870 AGATCTTGTCTCCATGAAGTTACGGTGGAGCAGATCGAAGATGGCGAATCTAGTCTTGCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* **
78091935 TACAGTGAAGCAGATTTAAGCCATTATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
* * ** * * *
78092000 TGTAGATCTTGTTTCCCTAAAGTTACAGTGGAGCAGATCGAAGACGGCGAATC-TAGTATTCCTG
131 TGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGC-AATCTTA-TCTTCCTA
*
78092064 AAGTTACAGTGAAGC-AGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTG
194 AAGTTGCAGTGAAGCAAGATTTAAG----CATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTG
* * *
78092128 CAGATTGTAGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTT
255 AAGATTGTAGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTT
78092193 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
320 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
* * * *
78092258 CTAAAGATTGTAGATCTTGTTTCCCTAAAGTTTTAGTGGAGCAGATCGAAGACGGTGAATCTAGT
385 CTGAAGATTGTAGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGT
* *
78092323 CTTCCTGAAGTTGCAATGAAGCAAATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGT
450 CTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGT
78092388 AGGCTGAAGATTGT
515 AGGCTGAAGATTGT
* * * *
78092402 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGACGAATCTTGTCTTCCAGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* *
78092467 TGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
* * * *
78092532 TGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCAAAAATAGTG-AATCTTGTCTTCCTA
131 TGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGA-CG-GCAATCTTATCTTCCTA
* * * **
78092596 AAGTTGCAGTGAAGC-AGATTTAAGCCACCATCTTAACTCCCT-AAGTCGTAG-GGTAACAGGCT
194 AAGTTGCAGTGAAGCAAGATTTAAG----CATCCTAGCTCCCTAAAGTTGTAGTGG-AGTAGGCT
* * * *
78092658 GAAGATTGTAGATCTTGTTTCCCTAAAGTTGCAGTGGAGAAGATCAAAGACGGCGAATCTAGTCT
254 GAAGATTGTAGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCT
*
78092723 TCCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAG
319 TCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAG
* *
78092788 GCTGAAGATTGTAGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAG
384 GCTGAAGATTGTAGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAG
78092853 TCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAG
449 TCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAG
*
78092918 TAGGTTGAAGATTGT
514 TAGGCTGAAGATTGT
* * * * *
78092933 AGATCTTGTTTCCCTAAAGTTATAGTGGAGCAGATCGAAGATGGTGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
*
78092998 TGCAATGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
*
78093063 TGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTTGTCTTCC-AG
131 TGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGC-AATCTTATCTTCCTA-
*
78093127 AAGTTGCAGTGAAGC-AGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAGTAGGCTG
194 AAGTTGCAGTGAAGCAAGATTTAAG---C-ATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTG
* * ** * *
78093191 AAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGATAGTGAATCTTGTCTT
255 AAGATTGTAGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTT
* * * **
78093256 CCTAAAGTTGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCT-AA-TTCGTAG-GGTAACA
320 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTT-GTAGTGG-AGTA
* **
78093318 GGCTGAAGATTGTAGATCTTGTTTCCCTAAAGTTACAGTGGAGCAGATCGAAGACGGCGAATCTA
383 GGCTGAAGATTGTAGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTA
* *
78093383 GTATTCCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGA
448 GTCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGA
*
78093448 GTAGGCTGCAGATTGT
513 GTAGGCTGAAGATTGT
* * *
78093464 AGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
*
78093529 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
* * * * * *
78093594 TGTAGATCTTGTTTCCCTAAAGTTTTAGTGGAGCAGATCGAAGACGGTGAATC-TAGTCTTCCTG
131 TGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGG-CAATCTTA-TCTTCCTA
*
78093658 AAGTTGCAATGAAGCAA-ATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTG
194 AAGTTGCAGTGAAGCAAGATTTAAG----CATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTG
* * * *
78093722 AAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGACGAATCTTGTCTT
255 AAGATTGTAGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTT
* * *
78093787 CCAGAAGTTGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAGTAGG
320 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
* * * * ** * *
78093852 CTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCAAAAATAGTGAATCTTGT
385 CTGAAGATTGTAGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGT
* * * * *
78093917 CTTCCTAAAGTTGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCT-AAGTCGTAG-GGTAA
450 CTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGG-AG
*
78093980 CAGGCTGAAGATTGT
514 TAGGCTGAAGATTGT
* * *
78093995 AGATCTTGTTTCCCTAAAGTTGCAGTGGAG-AAGATCAAAGACGGCGAATCTAGTCTTCCTGAAG
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAA-ATCGAAGACGGCGAATCTAGTCTTCCTGAAG
*
78094059 TTACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGA
65 TTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGA
* * * *
78094124 TTGTAGATCTTGTTTCCCTGAAGTTGCAGTAGAGCAGATCGAAGACGGCGAATC-TAGTCTTCCT
130 TTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGC-AATCTTA-TCTTCCT
* *
78094188 GAAGTTGCAGTGAAGC-AGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTT
193 AAAGTTGCAGTGAAGCAAGATTTAAG----CATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT
* * * *
78094252 GAAGATTGTAGATCTTGTTTCCCTAAAGTTATAGTGGAGCAGATCGAAGATGGTGAATCTAGTCT
254 GAAGATTGTAGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCT
*
78094317 TCCTGAAGTTGCAATGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAG
319 TCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAG
* * *
78094382 GCTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTTG
384 GCTGAAGATTGTAGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAG
* * *
78094447 TCTTCCAGAAGTTGCAGTGAAGCAGATTTAAGCCACTATCCTAGCTCCCTAAAGTTGGAGTGGAG
449 TCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAG
78094512 TAGGCTGAAGATTGT
514 TAGGCTGAAGATTGT
* ** * * *
78094527 AGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGATAGTGAATCTTGTCTTCCTAAAGT
1 AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
* * **
78094592 TGCAGTGAAGCAGATTTAAGCCACCATCTTAACTCCCT-AA-TTCGTAG-GGTAACAGGCTGAAG
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTT-GTAGTGG-AGTAGGCTGAAG
* * *
78094654 ATTGTAGATCTTGTCTCCCTAAAGTTGCAGTGGAGCAAATCAAAGA
129 ATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGA
78094700 AGCAAGCCTT
Statistics
Matches: 2069, Mismatches: 200, Indels: 59
0.89 0.09 0.03
Matches are distributed among these distances:
529 1 0.00
530 19 0.01
531 1502 0.73
532 534 0.26
533 12 0.01
534 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (528 bp):
AGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTAGTCTTCCTGAAGT
TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
TGTAGATCTTGTCTCCCTGAAGTTGTAGTGGAGCAAATCGAAGACGGCAATCTTATCTTCCTAAA
GTTGCAGTGAAGCAAGATTTAAGCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATT
GTAGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCTGAA
GTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAG
ATTGTAGATCTTGTTTCCCTGAAGTTGTAGTGGAGCAGATCGAAGACGGCGAATCTAGTCTTCCT
GAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTG
AAGATTGT
Found at i:78097246 original size:303 final size:302
Alignment explanation
Indices: 78096700--78097308 Score: 1182
Period size: 303 Copynumber: 2.0 Consensus size: 302
78096690 ATATTTGTTG
78096700 TTTGAAAGGAAACCACGTGCTTTATACTTTAGTTGAATTTATTTTATACATATACATTGGTACGT
1 TTTGAAAGGAAACCACGTGCTTTATACTTTAGTTGAATTTATTTTATACATATACATTGGTACGT
78096765 ATATTTGATATAAACATTACTAAATCCGTGTATTTTATACATATAGTTTTCTTTGTATATATAAG
66 ATATTTGATATAAACATTACTAAATCCGTGTATTTTATACATATAGTTTTCTTTGTATATATAAG
*
78096830 TATGTTCTTAAATCTATTATATATAATTTATGATAAATTTAATTTAATCTTGTATGTATTTCCAT
131 TATGTTCTTAAATCTATTATATATAATTTATGATAAAATTAATTTAATCTTGTATGTATTTCCAT
78096895 GTTTTTGCAAATAATTATTTTTCAAGTTATTTATGTATATATGATTTGTAAATCTATTATGTTTC
196 GTTTTTGCAAATAATTATTTTTCAAGTTATTTATGTATATATGATTTGTAAATCTATTATGTTTC
78096960 TAAGATTATATTTCACTATACATTTTTAGAATCTTTTCATAT
261 TAAGATTATATTTCACTATACATTTTTAGAATCTTTTCATAT
*
78097002 TTTGAAAGGAAACCACGTGCTTTTTACTTTAGTTGAATTTATTTTTATACATATACATTGGTACG
1 TTTGAAAGGAAACCACGTGCTTTATACTTTAGTTGAATTTA-TTTTATACATATACATTGGTACG
*
78097067 TATATTTGATATAAACATTACTAAATCTGTGTATTTTATACATATAGTTTTCTTTGTATATATAA
65 TATATTTGATATAAACATTACTAAATCCGTGTATTTTATACATATAGTTTTCTTTGTATATATAA
78097132 GTATGTTCTTAAATCTATTATATATAATTTATGATAAAATTAATTTAATCTTGTATGTATTTCCA
130 GTATGTTCTTAAATCTATTATATATAATTTATGATAAAATTAATTTAATCTTGTATGTATTTCCA
78097197 TGTTTTTGCAAATAATTATTTTTCAAGTTATTTATGTATATATGATTTGTAAATCTATTATGTTT
195 TGTTTTTGCAAATAATTATTTTTCAAGTTATTTATGTATATATGATTTGTAAATCTATTATGTTT
78097262 CTAAGATTATATTTCACTATACATTTTTAGAATCTTTTCATAT
260 CTAAGATTATATTTCACTATACATTTTTAGAATCTTTTCATAT
78097305 TTTG
1 TTTG
78097309 TACATAATTT
Statistics
Matches: 303, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
302 40 0.13
303 263 0.87
ACGTcount: A:0.32, C:0.09, G:0.10, T:0.49
Consensus pattern (302 bp):
TTTGAAAGGAAACCACGTGCTTTATACTTTAGTTGAATTTATTTTATACATATACATTGGTACGT
ATATTTGATATAAACATTACTAAATCCGTGTATTTTATACATATAGTTTTCTTTGTATATATAAG
TATGTTCTTAAATCTATTATATATAATTTATGATAAAATTAATTTAATCTTGTATGTATTTCCAT
GTTTTTGCAAATAATTATTTTTCAAGTTATTTATGTATATATGATTTGTAAATCTATTATGTTTC
TAAGATTATATTTCACTATACATTTTTAGAATCTTTTCATAT
Found at i:78098096 original size:131 final size:131
Alignment explanation
Indices: 78097901--78098159 Score: 412
Period size: 131 Copynumber: 2.0 Consensus size: 131
78097891 TAATCATTCA
78097901 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGAAATCGTGCCCTATC
1 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGAAATCGTGCCCTATC
* * * **
78097966 GTGCTGGGTTGCGATTTCTCGTTCGTTTAAAACAATCGAATATTCC-TTTGGAATTTCACTCATG
66 GTGCTGGGTTGCAATTTCCCGTTCGTTCAAAACAATCGAATA-TCCGTTTAAAATTTCACTCATG
78098030 TC
130 TC
* *
78098032 TTTAAAAATTCTTTAAAACGGAGGAAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGAAATCGTGCCCTATC
* * *
78098097 GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGGATATCCGTTTAAAATTTCACTCAT
66 GTGCTGGGTTGCAATTTCCCGTTCGTTCAAAACAATCGAATATCCGTTTAAAATTTCACTCAT
78098160 ATTTTCTAAA
Statistics
Matches: 117, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
130 3 0.03
131 114 0.97
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (131 bp):
TTTAAAAATTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGAAATCGTGCCCTATC
GTGCTGGGTTGCAATTTCCCGTTCGTTCAAAACAATCGAATATCCGTTTAAAATTTCACTCATGT
C
Found at i:78101920 original size:25 final size:27
Alignment explanation
Indices: 78101871--78101921 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
78101861 AAAAAGGTTT
* *
78101871 ATATATTTGATAAAATTAGTTAAAATA
1 ATATATTTGATAAAAATAGTGAAAATA
78101898 ATATATTTGA-AAAAAT-GTGAAAAT
1 ATATATTTGATAAAAATAGTGAAAAT
78101922 TTAAATTGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.32
26 5 0.23
27 10 0.45
ACGTcount: A:0.53, C:0.00, G:0.10, T:0.37
Consensus pattern (27 bp):
ATATATTTGATAAAAATAGTGAAAATA
Found at i:78104388 original size:66 final size:66
Alignment explanation
Indices: 78104260--78104397 Score: 188
Period size: 66 Copynumber: 2.1 Consensus size: 66
78104250 TCATATTTTA
* * * *
78104260 AAGTTGTAGCTAGAGTTCGTCATATTTTCTTGTTGCCTCTTCTTCCCTCGCTGCTACCTCCGCTT
1 AAGTTGTAGCTAGAGTTCATCATATTTTCTTGTAGCCTCTGCTTCCCTCGATGCTACCTCCGCTT
78104325 T
66 T
* * * *
78104326 AAGTTGTAGCTAGAGTTCATCATATTTTCTT-TGAGCCTCTGCTTCTCTTGATGCTGCTTCCGCT
1 AAGTTGTAGCTAGAGTTCATCATATTTTCTTGT-AGCCTCTGCTTCCCTCGATGCTACCTCCGCT
78104390 TT
65 TT
78104392 AAGTTG
1 AAGTTG
78104398 AGCAATTTGC
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
65 1 0.02
66 62 0.98
ACGTcount: A:0.14, C:0.25, G:0.18, T:0.43
Consensus pattern (66 bp):
AAGTTGTAGCTAGAGTTCATCATATTTTCTTGTAGCCTCTGCTTCCCTCGATGCTACCTCCGCTT
T
Found at i:78106002 original size:43 final size:42
Alignment explanation
Indices: 78105928--78106010 Score: 105
Period size: 43 Copynumber: 2.0 Consensus size: 42
78105918 TTTTTGCATT
* * *
78105928 GATATGTAATTTCATGTAAGACCATAGCTGGGCTATCGGCACC
1 GATATGTAATCTCATGTAAGAACATAGCTGGGATAT-GGCACC
*
78105971 GATATGTGATCTCATGTAAGAACAT-GTCTGGGATATGGCA
1 GATATGTAATCTCATGTAAGAACATAG-CTGGGATATGGCA
78106011 TTGGCATCGA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 5 0.14
43 30 0.86
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (42 bp):
GATATGTAATCTCATGTAAGAACATAGCTGGGATATGGCACC
Found at i:78106045 original size:48 final size:48
Alignment explanation
Indices: 78105978--78106210 Score: 306
Period size: 48 Copynumber: 4.9 Consensus size: 48
78105968 ACCGATATGT
* * *
78105978 GATCTCATGTAAGAACATGTCTGGGATATGGCATTGGCATCGACCTAC
1 GATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCGACATAC
* * **
78106026 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCGACATAC
* *
78106074 GATCCCATATAAGACCATGTCTGGG-TCATGGCATTGGCATCGACCTAC
1 GATCCCATGTAAGACCATGTCTGGGAT-ATGGCATTGGCATCGACATAC
* * * * **
78106122 GATCCCATGTAAGACCATGTCTGGCACATGACATTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCGACATAC
*
78106170 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATC
78106211 CTACCATGTA
Statistics
Matches: 158, Mismatches: 25, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
48 158 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCGACATAC
Found at i:78106105 original size:96 final size:96
Alignment explanation
Indices: 78105965--78106210 Score: 413
Period size: 96 Copynumber: 2.6 Consensus size: 96
78105955 CTGGGCTATC
* * *
78105965 GGCACCGATATGTGATCTCATGTAAGAACATGTCTGGGATATGGCATTGGCATCGACCTACGATC
1 GGCATCGATATGTGATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCGACCTACGATC
* *
78106030 CCATGTAAGACCATGTCTGGGACATGGCATT
66 CCATGTAAGACCATGTCTGGCACATGACATT
*
78106061 GGCATCGATATGTGATCCCATATAAGACCATGTCTGGG-TCATGGCATTGGCATCGACCTACGAT
1 GGCATCGATATGTGATCCCATGTAAGACCATGTCTGGGAT-ATGGCATTGGCATCGACCTACGAT
78106125 CCCATGTAAGACCATGTCTGGCACATGACATT
65 CCCATGTAAGACCATGTCTGGCACATGACATT
*
78106157 GGCATCGATATGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 GGCATCGATATGTGATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATC
78106211 CTACCATGTA
Statistics
Matches: 140, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
95 1 0.01
96 138 0.99
97 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (96 bp):
GGCATCGATATGTGATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCGACCTACGATC
CCATGTAAGACCATGTCTGGCACATGACATT
Found at i:78109454 original size:381 final size:382
Alignment explanation
Indices: 78108711--78109470 Score: 1353
Period size: 381 Copynumber: 2.0 Consensus size: 382
78108701 AATAGCGTAC
*
78108711 GTCCTCGAGTTTTGCACCTCTCACCACTTTCATCTAAAAGAAATTGTATATGATAATATAAGAAT
1 GTCCTCGAGTTTTGCACCTCCCACCACTTTCATCTAAAAGAAATTGTATATGATAATATAAGAAT
78108776 TCGAAACAAAAATCAATAATAAAAGTCAACATGCATGTAAATTAAAGTTAACATTACTTTGAATT
66 TCGAAACAAAAATCAATAATAAAAGTCAACATGCATGTAAATTAAAGTTAACATTACTTTGAATT
* * *
78108841 TCTGCAGGTTTGTCAGCTGCATTCGGAACATTCGAAGATCCAATAGCAGTCTATTGTTCACTATT
131 TATGCAGGTTTGTCAGCTGCATTCGGAACATTCGAAAATCCAATAGCAATCTATTGTTCACTATT
* *
78108906 TGTTTCTTCCGAATTTGGAGGATTTTGAATAATACTTAGATCTCAGAATCTTTTTCTAATCATAT
196 CGTTTCTTCCGAATTTGGAGGATTTTGAATAATACTTAGATCTCAGAATCTTCTTCTAATCATAT
*
78108971 TAACTGCAATACACATAAAATGGTTGAAATATTAGTAACTAATTACAACAATAATAGTACATATA
261 TAACTGCAATACACATAAAATAGTTGAAATATTAGTAACTAATTACAACAATAATAGTACATATA
*
78109036 AAATAGTTGAAATATTTAGCAAGACCAAGATTTAAATTATAATATTACATATAAATA
326 AAATAGTTAAAATATTTAGCAAGACCAAGATTTAAATTATAATATTACATATAAATA
78109093 GTCCTCGAGTTTTGCACCTCCCACCACTTTCATCTAAAA-AAATTGTATATGATAATATAAGAAT
1 GTCCTCGAGTTTTGCACCTCCCACCACTTTCATCTAAAAGAAATTGTATATGATAATATAAGAAT
*
78109157 TTGAAACAAAAATCAATAATAAAAGTCAACATGCATGTAAATTAAAGTTAACATTACTTTGAATT
66 TCGAAACAAAAATCAATAATAAAAGTCAACATGCATGTAAATTAAAGTTAACATTACTTTGAATT
* * *
78109222 TATGCAGGTTTGTCAGCTGTATTCGGAACATTCGAAAATCCAATAGCAATCTGTTTTTCACTATT
131 TATGCAGGTTTGTCAGCTGCATTCGGAACATTCGAAAATCCAATAGCAATCTATTGTTCACTATT
78109287 CGTTTCTTCCGAATTTGGAGGATTTTGAATAATACTTAGATCTC-GCAATCTTCTTCTAATCATA
196 CGTTTCTTCCGAATTTGGAGGATTTTGAATAATACTTAGATCTCAG-AATCTTCTTCTAATCATA
* * *
78109351 TTATCTGCAATACACATAAAATAGTTGAAATATTAGTATCTAATTACAATAATAATAGTACATAT
260 TTAACTGCAATACACATAAAATAGTTGAAATATTAGTAACTAATTACAACAATAATAGTACATAT
*
78109416 AAAATAGTTAAAATATTTAGCAAGCCCAAGATTTAAATTATAATATTACATATAA
325 AAAATAGTTAAAATATTTAGCAAGACCAAGATTTAAATTATAATATTACATATAA
78109471 TTAAAAAATC
Statistics
Matches: 361, Mismatches: 16, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
380 1 0.00
381 322 0.89
382 38 0.11
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (382 bp):
GTCCTCGAGTTTTGCACCTCCCACCACTTTCATCTAAAAGAAATTGTATATGATAATATAAGAAT
TCGAAACAAAAATCAATAATAAAAGTCAACATGCATGTAAATTAAAGTTAACATTACTTTGAATT
TATGCAGGTTTGTCAGCTGCATTCGGAACATTCGAAAATCCAATAGCAATCTATTGTTCACTATT
CGTTTCTTCCGAATTTGGAGGATTTTGAATAATACTTAGATCTCAGAATCTTCTTCTAATCATAT
TAACTGCAATACACATAAAATAGTTGAAATATTAGTAACTAATTACAACAATAATAGTACATATA
AAATAGTTAAAATATTTAGCAAGACCAAGATTTAAATTATAATATTACATATAAATA
Found at i:78110781 original size:43 final size:43
Alignment explanation
Indices: 78110728--78110844 Score: 207
Period size: 43 Copynumber: 2.7 Consensus size: 43
78110718 AAATTTGTAC
*
78110728 GTAAGTTATGATTATCATTAACTTTAAATGTTTAAATGTTTAT
1 GTAAGTTATGATAATCATTAACTTTAAATGTTTAAATGTTTAT
*
78110771 GTAATTTATGATAATCATTAACTTTAAATGTTTAAATGTTTAT
1 GTAAGTTATGATAATCATTAACTTTAAATGTTTAAATGTTTAT
*
78110814 GTAAGTTATGATAATCATTAAATTTAAATGT
1 GTAAGTTATGATAATCATTAACTTTAAATGT
78110845 AAAAGTTTAA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 70 1.00
ACGTcount: A:0.38, C:0.04, G:0.11, T:0.47
Consensus pattern (43 bp):
GTAAGTTATGATAATCATTAACTTTAAATGTTTAAATGTTTAT
Found at i:78114352 original size:21 final size:20
Alignment explanation
Indices: 78114324--78114362 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
78114314 ATGTGTATTT
78114324 TGAAGCTTCTTGATAGATTA
1 TGAAGCTTCTTGATAGATTA
*
78114344 TGAATGCTTGTTGATAGAT
1 TGAA-GCTTCTTGATAGAT
78114363 ATACAGGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.41
Consensus pattern (20 bp):
TGAAGCTTCTTGATAGATTA
Found at i:78116174 original size:13 final size:13
Alignment explanation
Indices: 78116158--78116190 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
78116148 TTCAATTAAA
*
78116158 TTAGTTAATTAGT
1 TTAGATAATTAGT
78116171 TTAGATAATTAGT
1 TTAGATAATTAGT
78116184 TTA-ATAA
1 TTAGATAA
78116191 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:78120013 original size:19 final size:18
Alignment explanation
Indices: 78119989--78120029 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
78119979 TCCTCCTATC
78119989 TTTTTCTTCTTATTATTTA
1 TTTTTCTTCTTATT-TTTA
*
78120008 TTTTTCTTTTTATTTTTA
1 TTTTTCTTCTTATTTTTA
78120026 TTTT
1 TTTT
78120030 CATTTCAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTTTCTTCTTATTTTTA
Found at i:78122682 original size:388 final size:388
Alignment explanation
Indices: 78121966--78122741 Score: 1543
Period size: 388 Copynumber: 2.0 Consensus size: 388
78121956 CTTGCCACAC
78121966 GGGCTGCTCACACGCCCGTGTCCTTCGAGGGTGTCGACCAAGGCTCTCATGATTCATATGGTCTG
1 GGGCTGCTCACACGCCCGTGTCCTTCGAGGGTGTCGACCAAGGCTCTCATGATTCATATGGTCTG
78122031 GCCATTGACCCACACGGTTGTGTGCAATTTAACAGATCGAACACGGCCTGGCAAACACGTCACAC
66 GCCATTGACCCACACGGTTGTGTGCAATTTAACAGATCGAACACGGCCTGGCAAACACGTCACAC
78122096 GGCCGTGGCACAAGGGCGTGTCCCTTTTTCAAAGAGTTGTACTTTACACGGAAAAGGGTACTTAG
131 GGCCGTGGCACAAGGGCGTGTCCCTTTTTCAAAGAGTTGTACTTTACACGGAAAAGGGTACTTAG
78122161 GGAGGAAGAAAGCCAATCCAAAGCCTATATAAACACCCTAAGTATGACCTAGAAAGGGGACCTCT
196 GGAGGAAGAAAGCCAATCCAAAGCCTATATAAACACCCTAAGTATGACCTAGAAAGGGGACCTCT
78122226 TCCAGAACTTTTCTAGAATACAGAACCACACGCTAGGAATTACTTGAAGGAAGCCAGACGATCCA
261 TCCAGAACTTTTCTAGAATACAGAACCACACGCTAGGAATTACTTGAAGGAAGCCAGACGATCCA
78122291 TCCCAAAAGCCGGAGCTACTCCAAGACTGAAGATCTCTCTCAGAATTCCTTCAAGGGTTTTAG
326 TCCCAAAAGCCGGAGCTACTCCAAGACTGAAGATCTCTCTCAGAATTCCTTCAAGGGTTTTAG
78122354 GGGCTGCTCACACGCCCGTGTCCTTCGAGGGTGTCGACCAAGGCTCTCATGATTCATATGGTCTG
1 GGGCTGCTCACACGCCCGTGTCCTTCGAGGGTGTCGACCAAGGCTCTCATGATTCATATGGTCTG
78122419 GCCATTGACCCACACGGTTGTGTGCAATTTAACAGATCGAACACGGCCTGGCAAACACGTCACAC
66 GCCATTGACCCACACGGTTGTGTGCAATTTAACAGATCGAACACGGCCTGGCAAACACGTCACAC
78122484 GGCCGTGGCACAAGGGCGTGTCCCTTTTTCAAAGAGTTGTACTTTACACGGAAAAGGGTACTTAG
131 GGCCGTGGCACAAGGGCGTGTCCCTTTTTCAAAGAGTTGTACTTTACACGGAAAAGGGTACTTAG
*
78122549 GGAGGAAGAAAGCCAATCCAAAGCCTATATAAACACCCTAAGTATGACCTAGAAAGGGGGCCTCT
196 GGAGGAAGAAAGCCAATCCAAAGCCTATATAAACACCCTAAGTATGACCTAGAAAGGGGACCTCT
78122614 TCCAGAACTTTTCTAGAATACAGAACCACACGCTAGGAATTACTTGAAGGAAGCCAGACGATCCA
261 TCCAGAACTTTTCTAGAATACAGAACCACACGCTAGGAATTACTTGAAGGAAGCCAGACGATCCA
78122679 TCCCAAAAGCCGGAGCTACTCCAAGACTGAAGATCTCTCTCAGAATTCCTTCAAGGGTTTTAG
326 TCCCAAAAGCCGGAGCTACTCCAAGACTGAAGATCTCTCTCAGAATTCCTTCAAGGGTTTTAG
78122742 AGTTTTCTTC
Statistics
Matches: 387, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
388 387 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (388 bp):
GGGCTGCTCACACGCCCGTGTCCTTCGAGGGTGTCGACCAAGGCTCTCATGATTCATATGGTCTG
GCCATTGACCCACACGGTTGTGTGCAATTTAACAGATCGAACACGGCCTGGCAAACACGTCACAC
GGCCGTGGCACAAGGGCGTGTCCCTTTTTCAAAGAGTTGTACTTTACACGGAAAAGGGTACTTAG
GGAGGAAGAAAGCCAATCCAAAGCCTATATAAACACCCTAAGTATGACCTAGAAAGGGGACCTCT
TCCAGAACTTTTCTAGAATACAGAACCACACGCTAGGAATTACTTGAAGGAAGCCAGACGATCCA
TCCCAAAAGCCGGAGCTACTCCAAGACTGAAGATCTCTCTCAGAATTCCTTCAAGGGTTTTAG
Found at i:78123354 original size:13 final size:13
Alignment explanation
Indices: 78123338--78123370 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
78123328 TTCAATTAAA
*
78123338 TTAGTTAATTAGT
1 TTAGATAATTAGT
78123351 TTAGATAATTAGT
1 TTAGATAATTAGT
78123364 TTA-ATAA
1 TTAGATAA
78123371 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:78126659 original size:40 final size:40
Alignment explanation
Indices: 78126565--78126709 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
78126555 TACTCGAATG
*
78126565 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
78126606 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
78126646 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* * *
78126686 ATATCCGTGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
78126710 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:78145463 original size:39 final size:39
Alignment explanation
Indices: 78145409--78145532 Score: 203
Period size: 39 Copynumber: 3.2 Consensus size: 39
78145399 ATTTGATGTG
78145409 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
78145448 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
78145487 TATCCGGACTTAAGGTCCGTAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
78145526 TGTCCGG
1 TATCCGG
78145533 GCTAAAGTCC
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:78145550 original size:39 final size:39
Alignment explanation
Indices: 78145409--78145559 Score: 133
Period size: 39 Copynumber: 3.9 Consensus size: 39
78145399 ATTTGATGTG
** * * *
78145409 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAAGTCCACAGGCTACGTGCTGGAAATA
** * * *
78145448 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAAGTCCACAGGCTACGTGCTGGAAATA
* **
78145487 TATCCGGACTTAAGGTCCGTAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAAGTCCACAGGCTACGTGCTGGAAATA
* * * *
78145526 TGTCCGGGC-TAAAGTCCCACAGGCTTCGAGCTGG
1 TATCCGGACTTAAAGT-CCACAGGCTACGTGCTGG
78145560 TATTATACTG
Statistics
Matches: 100, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
38 5 0.05
39 95 0.95
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (39 bp):
TATCCGGACTTAAAGTCCACAGGCTACGTGCTGGAAATA
Found at i:78145559 original size:78 final size:78
Alignment explanation
Indices: 78145409--78145566 Score: 185
Period size: 78 Copynumber: 2.0 Consensus size: 78
78145399 ATTTGATGTG
* * * ** *
78145409 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGCTA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCACAGGCTA
*
78145474 TGTGCTGGAATTA
66 TGAGCTGGAATTA
* * *
78145487 TATCCGGACTTAAGGTCCGTAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCACAGGCT
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCACAGGCT
*
78145551 -TCGAGCTGGTATTA
65 AT-GAGCTGGAATTA
78145565 TA
1 TA
78145567 CTGGGTTTAA
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
77 5 0.07
78 62 0.93
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (78 bp):
TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCACAGGCTA
TGAGCTGGAATTA
Found at i:78148571 original size:53 final size:53
Alignment explanation
Indices: 78148495--78148599 Score: 131
Period size: 53 Copynumber: 2.0 Consensus size: 53
78148485 ATAAACTACG
* ** * *
78148495 ATAAGGCAAAGATCCCATGTAAGACCATGCCAATG-CATGGCAATGGTGAGTTC
1 ATAAGGCAAAGATACCACATAAGACAATGCCAA-GACATGGCAATGGTAAGTTC
* *
78148548 ATAAGGCAAGGATACCACATAAGACAATGTCAAGACATGGCAATGGTAAGTT
1 ATAAGGCAAAGATACCACATAAGACAATGCCAAGACATGGCAATGGTAAGTT
78148600 TAAAAAGCAA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
52 1 0.02
53 43 0.98
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
ATAAGGCAAAGATACCACATAAGACAATGCCAAGACATGGCAATGGTAAGTTC
Found at i:78150574 original size:42 final size:41
Alignment explanation
Indices: 78150481--78150584 Score: 127
Period size: 42 Copynumber: 2.5 Consensus size: 41
78150471 TAACAAATCG
* * *
78150481 GCTATATATGGCACTTAGTGTGCAAGATTGAGATAGCTTCG
1 GCTACATATGGCACTTAGTGTGCAAGAATGAGATAGCTTCA
* *
78150522 GCTACATATGGCACTTAGTGTGCGAGAAATGTGATAGCTTCA
1 GCTACATATGGCACTTAGTGTGCAAG-AATGAGATAGCTTCA
* **
78150564 GTTATGTATGGCACTTAGTGT
1 GCTACATATGGCACTTAGTGT
78150585 ACGATTTGAA
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
41 24 0.44
42 30 0.56
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.33
Consensus pattern (41 bp):
GCTACATATGGCACTTAGTGTGCAAGAATGAGATAGCTTCA
Found at i:78155224 original size:19 final size:19
Alignment explanation
Indices: 78155200--78155237 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
78155190 ACACTTTTTA
78155200 GACCACACAAATTTCACAT
1 GACCACACAAATTTCACAT
78155219 GACCACACAAATTTCACAT
1 GACCACACAAATTTCACAT
78155238 CTTTTTGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.32, G:0.05, T:0.21
Consensus pattern (19 bp):
GACCACACAAATTTCACAT
Found at i:78156122 original size:30 final size:30
Alignment explanation
Indices: 78156086--78156144 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
78156076 TCAAAAGTTC
78156086 TTCAGGAAACACATGAGGGAACTCACAAAA
1 TTCAGGAAACACATGAGGGAACTCACAAAA
* *
78156116 TTCAGGAAACACATTAGGGTACTCACAAA
1 TTCAGGAAACACATGAGGGAACTCACAAA
78156145 CAACAGGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.44, C:0.20, G:0.19, T:0.17
Consensus pattern (30 bp):
TTCAGGAAACACATGAGGGAACTCACAAAA
Found at i:78156152 original size:30 final size:30
Alignment explanation
Indices: 78156088--78156153 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
78156078 AAAAGTTCTT
*
78156088 CAGGAAACACATGAGGGAACTCACAAAATT
1 CAGGAAACACATGAGGGAACTCACAAAATA
* *
78156118 CAGGAAACACATTAGGGTACTCACAAACA-A
1 CAGGAAACACATGAGGGAACTCACAAA-ATA
78156148 CAGGAA
1 CAGGAA
78156154 GAGATTCAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
30 31 0.97
31 1 0.03
ACGTcount: A:0.47, C:0.21, G:0.20, T:0.12
Consensus pattern (30 bp):
CAGGAAACACATGAGGGAACTCACAAAATA
Found at i:78159030 original size:16 final size:17
Alignment explanation
Indices: 78159009--78159042 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
78158999 TCACATTGAA
78159009 TTGTTTT-TTGAAAACC
1 TTGTTTTATTGAAAACC
78159025 TTGTTTTCATTGAAAACC
1 TTGTTTT-ATTGAAAACC
78159043 CTTCTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
18 9 0.56
ACGTcount: A:0.26, C:0.15, G:0.12, T:0.47
Consensus pattern (17 bp):
TTGTTTTATTGAAAACC
Found at i:78160314 original size:28 final size:28
Alignment explanation
Indices: 78160282--78160383 Score: 132
Period size: 28 Copynumber: 3.6 Consensus size: 28
78160272 TTATTCATTT
* * *
78160282 GGCCCAATCTCATTCATATGGCCTATCG
1 GGCCCAATCACATTCATATGGCCCATCA
78160310 GGCCCAATCACATTCATATGGCCCATCA
1 GGCCCAATCACATTCATATGGCCCATCA
* * **
78160338 AGCCCAATCACTTTCATATGGCCCGCCA
1 GGCCCAATCACATTCATATGGCCCATCA
*
78160366 AGCCCAATCACATTCATA
1 GGCCCAATCACATTCATA
78160384 GTCATGCAAT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.27, C:0.35, G:0.14, T:0.24
Consensus pattern (28 bp):
GGCCCAATCACATTCATATGGCCCATCA
Found at i:78160621 original size:16 final size:16
Alignment explanation
Indices: 78160600--78160631 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
78160590 CCAAACTTTT
*
78160600 AGCTTTTCGGTATTTC
1 AGCTTTTCGGCATTTC
78160616 AGCTTTTCGGCATTTC
1 AGCTTTTCGGCATTTC
78160632 GGGATTTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.22, G:0.19, T:0.47
Consensus pattern (16 bp):
AGCTTTTCGGCATTTC
Found at i:78164910 original size:28 final size:28
Alignment explanation
Indices: 78164869--78164939 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
78164859 TTATTCATTT
*
78164869 TGGCCCATTCAGGCCCAATCTCATTCATA
1 TGGCCCA-TCAGGCCCAATCACATTCATA
* *
78164898 TGGTCTATCAGGCCCAATCACATTCATA
1 TGGCCCATCAGGCCCAATCACATTCATA
78164926 TGGCCCATCAGGCC
1 TGGCCCATCAGGCC
78164940 GAATATGGCC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 32 0.86
29 5 0.14
ACGTcount: A:0.24, C:0.34, G:0.17, T:0.25
Consensus pattern (28 bp):
TGGCCCATCAGGCCCAATCACATTCATA
Found at i:78168239 original size:29 final size:28
Alignment explanation
Indices: 78168190--78168249 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
78168180 AAGAAGTTCT
* * *
78168190 TTTGTGGCAATTTTTGTAAAAGGACACC
1 TTTGTGGCAATCTATGTAAAAGGAAACC
78168218 TTTGTGGCAATCTATGTTAAAAGGAAACC
1 TTTGTGGCAATCTATG-TAAAAGGAAACC
78168247 TTT
1 TTT
78168250 ATGGTGATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 14 0.50
29 14 0.50
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (28 bp):
TTTGTGGCAATCTATGTAAAAGGAAACC
Found at i:78168259 original size:29 final size:29
Alignment explanation
Indices: 78168206--78168268 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
78168196 GCAATTTTTG
* * *
78168206 TAAAAGGACACCTTTGTGGCAATCTATGT
1 TAAAAGGAAACCTTTATGGCAATCTATAT
** *
78168235 TAAAAGGAAACCTTTATGGTGATCTCTAT
1 TAAAAGGAAACCTTTATGGCAATCTATAT
78168264 TAAAA
1 TAAAA
78168269 CTGCCTTTGT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (29 bp):
TAAAAGGAAACCTTTATGGCAATCTATAT
Found at i:78170821 original size:40 final size:40
Alignment explanation
Indices: 78170777--78170927 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 40
78170767 GAGGAAGTAT
**
78170777 TGGCAGCTTGTCTGCAATTCTGGTGGCTTGTAAACATTAC
1 TGGCAGCTTGTCTGCAACACTGGTGGCTTGTAAACATTAC
* ** *
78170817 TGGCAGCTTATCTGCAACACTGGTGGCTTGTCCACATTAT
1 TGGCAGCTTGTCTGCAACACTGGTGGCTTGTAAACATTAC
** * **
78170857 TGGCAGCTTGTCTATAGCACTGGTGGCTTGTCCACATTAC
1 TGGCAGCTTGTCTGCAACACTGGTGGCTTGTAAACATTAC
* * * * * *
78170897 TGGAAACTTGTTTGAAAAACTTGTGGCTTGT
1 TGGCAGCTTGTCTGCAACACTGGTGGCTTGT
78170928 CCACAATATT
Statistics
Matches: 92, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 92 1.00
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.34
Consensus pattern (40 bp):
TGGCAGCTTGTCTGCAACACTGGTGGCTTGTAAACATTAC
Found at i:78170898 original size:20 final size:20
Alignment explanation
Indices: 78170835--78170899 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
78170825 TATCTGCAAC
78170835 ACTGGTGGCTTGTCCACATT
1 ACTGGTGGCTTGTCCACATT
* ** * * **
78170855 ATTGGCAGCTTGTCTATAGC
1 ACTGGTGGCTTGTCCACATT
78170875 ACTGGTGGCTTGTCCACATT
1 ACTGGTGGCTTGTCCACATT
78170895 ACTGG
1 ACTGG
78170900 AAACTTGTTT
Statistics
Matches: 31, Mismatches: 14, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.17, C:0.23, G:0.26, T:0.34
Consensus pattern (20 bp):
ACTGGTGGCTTGTCCACATT
Found at i:78177285 original size:42 final size:42
Alignment explanation
Indices: 78177238--78177322 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
78177228 TAGAACAAGT
78177238 TATTTAATTTGCTAAGGCTAGGTTCGGTTGATGTGAACTCCA
1 TATTTAATTTGCTAAGGCTAGGTTCGGTTGATGTGAACTCCA
78177280 TATTTAATTTGCTAAGGCTAGGTTCGGTTGATGTGAACTCCA
1 TATTTAATTTGCTAAGGCTAGGTTCGGTTGATGTGAACTCCA
78177322 T
1 T
78177323 TGGACAACTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.39
Consensus pattern (42 bp):
TATTTAATTTGCTAAGGCTAGGTTCGGTTGATGTGAACTCCA
Found at i:78179883 original size:18 final size:19
Alignment explanation
Indices: 78179812--78179894 Score: 57
Period size: 18 Copynumber: 4.5 Consensus size: 19
78179802 TCAGACTCAA
*
78179812 TTTCTTTTTCAATTTTCTT
1 TTTCTTTTTCAACTTTCTT
* *
78179831 TTTC-TTCTC-ACATTCTT
1 TTTCTTTTTCAACTTTCTT
** * * *
78179848 TTTCACTCTCGA-TCTCTT
1 TTTCTTTTTCAACTTTCTT
78179866 TTTCTTTTTC-ACTTTCTTT
1 TTTCTTTTTCAACTTTC-TT
78179885 TTTCTTTTTC
1 TTTCTTTTTC
78179895 TTATTCTCTT
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
17 11 0.22
18 22 0.44
19 17 0.34
ACGTcount: A:0.08, C:0.24, G:0.01, T:0.66
Consensus pattern (19 bp):
TTTCTTTTTCAACTTTCTT
Found at i:78179901 original size:19 final size:20
Alignment explanation
Indices: 78179860--78179933 Score: 66
Period size: 19 Copynumber: 3.7 Consensus size: 20
78179850 TCACTCTCGA
78179860 TCTCTTTTTCTTTTTCACTT
1 TCTCTTTTTCTTTTTCACTT
*
78179880 TCT-TTTTTCTTTTTC-TTAT
1 TCTCTTTTTCTTTTTCACT-T
78179899 TCTCTTTTTGCTTTCTTTCAC--
1 TCTCTTTTT-C-TT-TTTCACTT
*
78179920 ACTCTTTTTCTTTT
1 TCTCTTTTTCTTTT
78179934 GTTTCTTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 14
0.73 0.05 0.23
Matches are distributed among these distances:
18 3 0.07
19 18 0.40
20 9 0.20
21 9 0.20
22 2 0.04
23 4 0.09
ACGTcount: A:0.05, C:0.23, G:0.01, T:0.70
Consensus pattern (20 bp):
TCTCTTTTTCTTTTTCACTT
Found at i:78179913 original size:25 final size:25
Alignment explanation
Indices: 78179862--78179916 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
78179852 ACTCTCGATC
* *
78179862 TCTTTTTCTTTTTCACTTTCTTTTT
1 TCTTTTTCTTATTCACTTTCTTCTT
*
78179887 TCTTTTTCTTATTCTCTTT-TTGCTT
1 TCTTTTTCTTATTCACTTTCTT-CTT
78179912 TCTTT
1 TCTTT
78179917 CACACTCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.75
Consensus pattern (25 bp):
TCTTTTTCTTATTCACTTTCTTCTT
Found at i:78179948 original size:31 final size:31
Alignment explanation
Indices: 78179910--78179968 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
78179900 CTCTTTTTGC
* * *
78179910 TTTCTTTCACACTCTTTTTCTTTTGTTTCTT
1 TTTCTTTCAAACTCTTTCTCATTTGTTTCTT
*
78179941 TTTCTTTCAAATTCTTTCTCATTTGTTT
1 TTTCTTTCAAACTCTTTCTCATTTGTTT
78179969 TTTCAATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.10, C:0.20, G:0.03, T:0.66
Consensus pattern (31 bp):
TTTCTTTCAAACTCTTTCTCATTTGTTTCTT
Found at i:78181920 original size:28 final size:28
Alignment explanation
Indices: 78181878--78181932 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
78181868 TTCATTCATT
*
78181878 CATGTGTACCGTCCAAAGTGAATGTATG
1 CATGTGTACCATCCAAAGTGAATGTATG
*
78181906 CATGTGTGCCATCCAAAGTGAATGTAT
1 CATGTGTACCATCCAAAGTGAATGTAT
78181933 CTTTTCAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (28 bp):
CATGTGTACCATCCAAAGTGAATGTATG
Found at i:78182356 original size:10 final size:10
Alignment explanation
Indices: 78182341--78182374 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
78182331 GCTGGAAAGA
78182341 AGCTAAAACG
1 AGCTAAAACG
78182351 AGCTAAAACG
1 AGCTAAAACG
* *
78182361 AGCTGAAACA
1 AGCTAAAACG
78182371 AGCT
1 AGCT
78182375 CAAGTGAGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.47, C:0.21, G:0.21, T:0.12
Consensus pattern (10 bp):
AGCTAAAACG
Found at i:78191139 original size:19 final size:20
Alignment explanation
Indices: 78191115--78191152 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
78191105 GGTACCACCA
78191115 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
78191134 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
78191153 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:78191522 original size:46 final size:45
Alignment explanation
Indices: 78191429--78191514 Score: 120
Period size: 46 Copynumber: 1.9 Consensus size: 45
78191419 TACATTTCAC
* *
78191429 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
* *
78191475 GAACTCGGACTCAACTCAATGAGTTCGG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
78191515 CCTAGTGACA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 9 0.25
46 27 0.75
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:78191960 original size:30 final size:30
Alignment explanation
Indices: 78191926--78191985 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
78191916 ATTTAATACG
78191926 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
78191956 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
78191986 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:78198628 original size:19 final size:20
Alignment explanation
Indices: 78198604--78198641 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
78198594 GGTACCACCA
78198604 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
78198623 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
78198642 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:78199011 original size:46 final size:45
Alignment explanation
Indices: 78198918--78199003 Score: 111
Period size: 46 Copynumber: 1.9 Consensus size: 45
78198908 TACATTTCAC
* *
78198918 GAACTCGGACACAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACACAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
* * *
78198964 GAACTCGGACTCCACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCGGACACAACTCAACGAGTTCGGAATGCGCAACCAT
78199004 CCTAGTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 9 0.26
46 26 0.74
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (45 bp):
GAACTCGGACACAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:78217389 original size:39 final size:39
Alignment explanation
Indices: 78217345--78217470 Score: 155
Period size: 39 Copynumber: 3.2 Consensus size: 39
78217335 GTTGAGATTG
*
78217345 AAAATATCCGGACATGAGGTCCACAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * * *
78217384 AAAATATTCGGACATGAGATCCGCAGGATATATGCT-AA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * **
78217422 AAATATATCCGGACTTGAGGTCGGCAGGCTACGTGCTGGA
1 AAA-ATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
78217462 AAAATATCC
1 AAAATATCC
78217471 AGGTTTAAAA
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
38 4 0.06
39 64 0.89
40 4 0.06
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:78222066 original size:40 final size:40
Alignment explanation
Indices: 78221968--78222270 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
78221958 TCCTCGTTCA
* * * * *
78221968 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
78222007 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
78222047 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
78222087 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
78222127 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
78222167 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
78222207 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
78222247 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
78222271 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:78229426 original size:40 final size:40
Alignment explanation
Indices: 78229328--78229630 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
78229318 TCCTCGTTCA
* * * * *
78229328 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
78229367 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
78229407 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
78229447 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
78229487 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
78229527 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
78229567 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
78229607 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
78229631 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Done.