Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 230 of 373
Found at i:78238653 original size:13 final size:12
Alignment explanation
Indices: 78238606--78238653 Score: 53
Period size: 13 Copynumber: 3.9 Consensus size: 12
78238596 ATTCAATTCA
*
78238606 TTTTTTCTTTTAT
1 TTTTTTCTCTT-T
78238619 TTTTTTCTCTCTT
1 TTTTTTCTCT-TT
78238632 TTTTTTCT-TTT
1 TTTTTTCTCTTT
*
78238643 TTCTTTCTCTT
1 TTTTTTCTCTT
78238654 CTTCCTCTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 9 0.29
12 3 0.10
13 18 0.58
14 1 0.03
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (12 bp):
TTTTTTCTCTTT
Found at i:78242609 original size:13 final size:13
Alignment explanation
Indices: 78242591--78242618 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
78242581 CATCTTTTTA
78242591 TTATTTTTCATCT
1 TTATTTTTCATCT
78242604 TTATTTTTCATCT
1 TTATTTTTCATCT
78242617 TT
1 TT
78242619 CCAATTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (13 bp):
TTATTTTTCATCT
Found at i:78247646 original size:47 final size:47
Alignment explanation
Indices: 78247595--78247712 Score: 143
Period size: 47 Copynumber: 2.5 Consensus size: 47
78247585 AAGTCAAAGC
*
78247595 CATGTCCCAGACATGGTCTTACACTGACTATCGCCTCA-C-A-GCCAACG
1 CATGTCCCAGACAT-GTCTTACACTGACT-T-ACCTCATCGAGGCCAACG
* * * *
78247642 CATGTCCCAAACATGTCTTACACTGACTTACTTCATCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGACTTACCTCATCGAGGCCAACG
78247689 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
78247713 CGTACTCATC
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
44 4 0.06
45 2 0.03
46 15 0.24
47 41 0.66
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.25
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTGACTTACCTCATCGAGGCCAACG
Found at i:78250770 original size:8 final size:8
Alignment explanation
Indices: 78250733--78250763 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
78250723 TTACTAAAAC
78250733 TTATTATA
1 TTATTATA
*
78250741 CTATTATA
1 TTATTATA
78250749 TTATTATA
1 TTATTATA
78250757 TTATTAT
1 TTATTAT
78250764 TATATTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (8 bp):
TTATTATA
Found at i:78250932 original size:35 final size:35
Alignment explanation
Indices: 78250886--78250960 Score: 125
Period size: 35 Copynumber: 2.2 Consensus size: 35
78250876 AATTGGTAAG
78250886 TCTATTTAATTTCTATTCTTATAATTTTTGAGTTT
1 TCTATTTAATTTCTATTCTTATAATTTTTGAGTTT
* *
78250921 TCTATTTAATTTCTTTTCTTGTAATTTTTGAGTTT
1 TCTATTTAATTTCTATTCTTATAATTTTTGAGTTT
78250956 T-TATT
1 TCTATT
78250961 ATCCTAGAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 4 0.11
35 34 0.89
ACGTcount: A:0.20, C:0.08, G:0.07, T:0.65
Consensus pattern (35 bp):
TCTATTTAATTTCTATTCTTATAATTTTTGAGTTT
Found at i:78263497 original size:40 final size:40
Alignment explanation
Indices: 78263446--78263579 Score: 126
Period size: 40 Copynumber: 3.3 Consensus size: 40
78263436 ACTAAGATCA
*
78263446 AAAGGCATTTGTGCAAAATAC-AAATTCTGGGTTAAGCCCC
1 AAAGGCATTTGTGCAAAATACTAAA-TCCGGGTTAAGCCCC
* * * * *
78263486 GAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCC
1 AAAGGCATTTGTGCAAAATACTAAATCCGGGTTAAGCCCC
* * ** * *
78263526 AAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCC
1 AAAGGCATTTGTGCAAAATACTAAATCCGGGTTAAGCCCC
*
78263566 GAAGGCATTGTGTG
1 AAAGGCATT-TGTG
78263580 AGTTACTAAA
Statistics
Matches: 79, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
40 73 0.92
41 6 0.08
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (40 bp):
AAAGGCATTTGTGCAAAATACTAAATCCGGGTTAAGCCCC
Found at i:78263595 original size:39 final size:39
Alignment explanation
Indices: 78263474--78263613 Score: 181
Period size: 40 Copynumber: 3.5 Consensus size: 39
78263464 TACAAATTCT
* * *
78263474 GGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCC
1 GGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAATCC
* *
78263514 GGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCC
1 GGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAATCC
* *
78263554 GGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACC
1 GGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCC
* *
78263593 GGGCTATGTCCCGAAGGCATT
1 GGGTTAAGTCCCGAAGGCATT
78263614 TGAACGAGGA
Statistics
Matches: 88, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 37 0.42
40 51 0.58
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
GGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCC
Found at i:78263633 original size:79 final size:80
Alignment explanation
Indices: 78263474--78263648 Score: 185
Period size: 79 Copynumber: 2.2 Consensus size: 80
78263464 TACAAATTCT
* * * * **
78263474 GGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCAAAGGCATTCGTG
1 GGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCAAAGGCATTCGAA
* *
78263539 CGAGTTATTAAATCC
66 CGAGTGACTAAATCC
* * * * *
78263554 GGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAA
1 GGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCAAAGGCATTCGAA
*
78263618 CGAG-GAGCTATATCC
66 CGAGTGA-CTAAATCC
*
78263633 -GGTTAAATCCCGAAGG
1 GGGTTAAGTCCCGAAGG
78263649 TACGTGATTT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 16 0.20
79 47 0.59
80 16 0.20
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (80 bp):
GGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCAAAGGCATTCGAA
CGAGTGACTAAATCC
Found at i:78282108 original size:18 final size:18
Alignment explanation
Indices: 78282029--78282122 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
78282019 CAAGGTCACG
*
78282029 ATCAATAGCGTCACTATC
1 ATCAATATCGTCACTATC
* *
78282047 ATCAATAGCGTCACTAGC
1 ATCAATATCGTCACTATC
*
78282065 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTATC
78282083 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTATC
78282101 ATCAATATCG--A-TATC
1 ATCAATATCGTCACTATC
78282116 ATCAATA
1 ATCAATA
78282123 AGAAAACCTT
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (18 bp):
ATCAATATCGTCACTATC
Found at i:78282109 original size:9 final size:9
Alignment explanation
Indices: 78282029--78282109 Score: 54
Period size: 9 Copynumber: 9.0 Consensus size: 9
78282019 CAAGGTCACG
*
78282029 ATCAATAGC
1 ATCAATATC
* *
78282038 GTCACTATC
1 ATCAATATC
*
78282047 ATCAATAGC
1 ATCAATATC
* * *
78282056 GTCACTAGC
1 ATCAATATC
78282065 ATCAATATC
1 ATCAATATC
* * *
78282074 GTCACTAGC
1 ATCAATATC
78282083 ATCAATATC
1 ATCAATATC
* *
78282092 GTCACTATC
1 ATCAATATC
78282101 ATCAATATC
1 ATCAATATC
78282110 GATATCATCA
Statistics
Matches: 51, Mismatches: 21, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.28
Consensus pattern (9 bp):
ATCAATATC
Found at i:78284510 original size:21 final size:21
Alignment explanation
Indices: 78284480--78284568 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
78284470 CTCACAAAGA
* *
78284480 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
78284500 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
78284521 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
78284542 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTAACTTAGAC
78284566 AAA
1 AAA
78284569 TCTTTTTGTC
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 36 0.62
23 1 0.02
24 15 0.26
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:78284561 original size:24 final size:21
Alignment explanation
Indices: 78284480--78284548 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
78284470 CTCACAAAGA
* * *
78284480 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
78284500 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
78284521 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
78284542 AAAAAGA
1 AAAAAGA
78284549 AACGAAGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:78307098 original size:23 final size:23
Alignment explanation
Indices: 78307058--78307109 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
78307048 ATTCGTAGGT
*
78307058 CAAATAAATTATGCTAATAAATA
1 CAAATAAATTATACTAATAAATA
* * *
78307081 CAAATATATTATATTAATAGATA
1 CAAATAAATTATACTAATAAATA
78307104 CTAAAT
1 C-AAAT
78307110 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.35
Consensus pattern (23 bp):
CAAATAAATTATACTAATAAATA
Found at i:78307718 original size:22 final size:22
Alignment explanation
Indices: 78307678--78307731 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
78307668 TACGCAGACA
* *
78307678 CTCATATACCCCTTCTTTTCGTC
1 CTCATTTA-CCCTTCTTTTCCTC
*
78307701 CTCATTTACCCTTGTTTTCCTC
1 CTCATTTACCCTTCTTTTCCTC
78307723 CTCATTTAC
1 CTCATTTAC
78307732 TGCCTTTATC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 21 0.75
23 7 0.25
ACGTcount: A:0.13, C:0.37, G:0.04, T:0.46
Consensus pattern (22 bp):
CTCATTTACCCTTCTTTTCCTC
Found at i:78310749 original size:46 final size:47
Alignment explanation
Indices: 78310600--78310821 Score: 184
Period size: 46 Copynumber: 4.7 Consensus size: 47
78310590 TTATTTGTAT
** * *
78310600 GCTAGTGTAAGACATGTCTAGGACAT-GCATCAACCAC-ATCATGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGA-GATGAGA
* * * * *
78310646 GCTAGTGTAAGACCATGTCTGGGACATGGTATCGGCATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTAGGACATGGCATCGGCCTCGAGATGAGA
78310694 GCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGAGATG-AGA
* * * * * * *
78310740 GCCAGTGTAAGGCATGTCTGGGACATGGCATCGACATGGATATGTGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGAGA--TGAGA
* *
78310789 G-TCAGTATAAGACCATGTCTGGGACATGGCATC
1 GCT-AGTGTAAGA-CATGTCTAGGACATGGCATC
78310822 AACTTGATGG
Statistics
Matches: 142, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
46 49 0.35
47 38 0.27
48 23 0.16
49 12 0.08
50 20 0.14
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGAGATGAGA
Found at i:78310863 original size:47 final size:49
Alignment explanation
Indices: 78310641--78310863 Score: 178
Period size: 47 Copynumber: 4.7 Consensus size: 49
78310631 AACCACATCA
* * ** *
78310641 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGTATCGGCATTG-A-G
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATGGAATG
* * * ** * *
78310688 ACGAGAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGATG
1 -TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATGGA-ATG
* *
78310737 T-A-AGCCAGTGTAAG-GCATGTCTGGGACATGGCATCGACATGGATATG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATGGA-ATG
* * *
78310784 TGAGAGTCAGTATAAGACCATGTCTGGGACATGGCATCAAC-TTG-ATG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATGGAATG
*
78310831 -GATGAGCCAGTGTAAGACCATATCTGGGACATG
1 TGA-GAGCCAGTGTAAGACCATGTCTGGGACATG
78310864 TAATCAGTAT
Statistics
Matches: 146, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
46 35 0.24
47 58 0.40
48 18 0.12
49 13 0.09
50 22 0.15
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.23
Consensus pattern (49 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATGGAATG
Found at i:78318326 original size:46 final size:45
Alignment explanation
Indices: 78318273--78318481 Score: 181
Period size: 46 Copynumber: 4.5 Consensus size: 45
78318263 TTTGTGTGCT
*
78318273 AGTGTAAGACATGTCTGGGACATGAATCAGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCTCGAGATGTAAGCC
* * * * * *
78318319 AGTGTAAGACCATGTTTGGGACATGGCGTCGACATTGAGACG-AGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG-CCTCGAGATGTA-AGCC
*
78318367 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCTCGAGATGTAAGCC
* * * * ** *
78318413 AATGGAAAACATGTCTGGGACATGCATCGGCTATAAGATGT--GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGCCT-CGAGATGTAAGCC
*
78318457 AGTGTAAGACCATGTCTAGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
78318482 GCATTTGCAC
Statistics
Matches: 131, Mismatches: 24, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
44 8 0.06
45 17 0.13
46 53 0.40
47 31 0.24
48 22 0.17
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCTCGAGATGTAAGCC
Found at i:78319566 original size:28 final size:28
Alignment explanation
Indices: 78319525--78319589 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
78319515 CACAGACTAA
* *
78319525 GACACGGGCGTGTCATGGCCTTGTGAGG
1 GACACGGGCATGTCATGGCCGTGTGAGG
78319553 GACACGGGCATGTCATGGCCGTGTGAGG
1 GACACGGGCATGTCATGGCCGTGTGAGG
78319581 GACACGGGC
1 GACACGGGC
78319590 CATAGACACG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.17, C:0.23, G:0.43, T:0.17
Consensus pattern (28 bp):
GACACGGGCATGTCATGGCCGTGTGAGG
Found at i:78319604 original size:28 final size:27
Alignment explanation
Indices: 78319546--78319605 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 27
78319536 GTCATGGCCT
* *
78319546 TGTGAGGGACACGGGCATGTCATGGCCG
1 TGTGAGGGACACGGGCATGACACGG-CG
78319574 TGTGAGGGACACGGGCCATAGACACGG-G
1 TGTGAGGGACACGGG-CAT-GACACGGCG
78319602 TGTG
1 TGTG
78319606 TGTCAAGCCC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 20 0.71
29 3 0.11
30 5 0.18
ACGTcount: A:0.20, C:0.20, G:0.43, T:0.17
Consensus pattern (27 bp):
TGTGAGGGACACGGGCATGACACGGCG
Found at i:78319764 original size:21 final size:20
Alignment explanation
Indices: 78319739--78319777 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
78319729 GTCATAATGA
*
78319739 CCACACGGTCGTGTTGCCCAT
1 CCACACGGGCGTG-TGCCCAT
78319760 CCACACGGGCGTGTGCCC
1 CCACACGGGCGTGTGCCC
78319778 TGTTTCAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.13, C:0.41, G:0.28, T:0.18
Consensus pattern (20 bp):
CCACACGGGCGTGTGCCCAT
Found at i:78329719 original size:28 final size:29
Alignment explanation
Indices: 78329687--78329801 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
78329677 TACCTGTATT
* *
78329687 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
78329715 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
78329744 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* * *
78329773 TGGCCCGTTAGG-CCTAGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
78329801 T
1 T
78329802 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 29 0.38
29 46 0.61
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:78329748 original size:57 final size:58
Alignment explanation
Indices: 78329678--78329786 Score: 166
Period size: 58 Copynumber: 1.9 Consensus size: 58
78329668 AAATTCACAT
* *
78329678 ACCTGTATTTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
78329735 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCC
78329787 TAGTCACATT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.28
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:78334223 original size:28 final size:28
Alignment explanation
Indices: 78334191--78334305 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 28
78334181 TACCTGTATC
* *
78334191 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
78334219 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
* *
78334248 TGGCCCATTAGGCTCAAATCACATTTATA
1 TGGCCCATTAGGC-CCAATCACATTCATA
** *
78334277 TGGCCTTTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
78334305 T
1 T
78334306 TCCTGCTCAC
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
28 28 0.38
29 43 0.59
30 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:78334243 original size:57 final size:58
Alignment explanation
Indices: 78334182--78334292 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 58
78334172 AAATTCACAT
* * *
78334182 ACCTGTATCTGGCCCATTAAGC-CCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCTCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * **
78334239 ACCTGTATATGGCCCATTAGGCTCAAATCACATTTATATGGCCTTTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCTCAAATCACATTCATATGGCCCATTAGGCCCA
78334293 GTCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 20 0.43
58 26 0.57
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCTCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:78345288 original size:26 final size:26
Alignment explanation
Indices: 78345214--78345288 Score: 75
Period size: 26 Copynumber: 3.0 Consensus size: 26
78345204 GCTATATAAC
* *
78345214 AGGAAGCTCAT-AAGAGCC-ATAATT
1 AGGAAGCTCATAAAGAACCTTTAATT
* * *
78345238 AAGAAGTTCACAAAGAA-CTTGTAATT
1 AGGAAGCTCATAAAGAACCTT-TAATT
78345264 AGGAAGCTCATAAAGAACCTTTAAT
1 AGGAAGCTCATAAAGAACCTTTAAT
78345289 CATGAGCTCT
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
24 9 0.23
25 4 0.10
26 23 0.59
27 3 0.08
ACGTcount: A:0.44, C:0.15, G:0.17, T:0.24
Consensus pattern (26 bp):
AGGAAGCTCATAAAGAACCTTTAATT
Found at i:78346424 original size:30 final size:30
Alignment explanation
Indices: 78346375--78346434 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
78346365 TTTTATTATC
78346375 ATTTATCATCTTTTATTATTTCACTTTCCA
1 ATTTATCATCTTTTATTATTTCACTTTCCA
* * *
78346405 ATTTCATCAT-TTTTTTTATTTTATTTTCCA
1 ATTT-ATCATCTTTTATTATTTCACTTTCCA
78346435 TGGATGAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.22, C:0.17, G:0.00, T:0.62
Consensus pattern (30 bp):
ATTTATCATCTTTTATTATTTCACTTTCCA
Found at i:78359874 original size:28 final size:28
Alignment explanation
Indices: 78359843--78359936 Score: 161
Period size: 28 Copynumber: 3.4 Consensus size: 28
78359833 TGGTGTCAAT
*
78359843 GCCCGTGTTCCTCACACGACCATGACAT
1 GCCCGTGTTCCTCACACGACCATGACAC
78359871 GCCCGTGTTCCTCACACGACCATGACAC
1 GCCCGTGTTCCTCACACGACCATGACAC
* *
78359899 ACCCATGTTCCTCACACGACCATGACAC
1 GCCCGTGTTCCTCACACGACCATGACAC
78359927 GCCCGTGTTC
1 GCCCGTGTTC
78359937 TAGCCGGTGT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 61 1.00
ACGTcount: A:0.21, C:0.41, G:0.17, T:0.20
Consensus pattern (28 bp):
GCCCGTGTTCCTCACACGACCATGACAC
Found at i:78361405 original size:30 final size:30
Alignment explanation
Indices: 78361364--78361421 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
78361354 AAATTTACAC
*
78361364 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTGCCCCTAGA
78361394 CTTTGGCAAAATGACCATTTTGCCCCTA
1 CTTTGGCAAAATGACCATTTTGCCCCTA
78361422 TGCTCGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTGCCCCTAGA
Found at i:78364157 original size:27 final size:27
Alignment explanation
Indices: 78364126--78364303 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
78364116 TAAATTGTAC
78364126 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
78364153 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78364179 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
78364207 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
78364235 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78364262 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78364289 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78364304 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:78364240 original size:82 final size:81
Alignment explanation
Indices: 78364127--78364282 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
78364117 AAATTGTACA
* *
78364127 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
78364191 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
78364208 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
78364273 TGCGAGTTGA
65 TGCGAATTGA
78364283 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:78364294 original size:82 final size:81
Alignment explanation
Indices: 78364123--78364303 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
78364113 GATTAAATTG
* *
78364123 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
78364188 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
78364204 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
78364268 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
78364286 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
78364304 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:78372067 original size:27 final size:27
Alignment explanation
Indices: 78372036--78372213 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
78372026 TAAATTGTAC
78372036 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
78372063 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78372089 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
78372117 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
78372145 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78372172 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78372199 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78372214 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:78372150 original size:82 final size:81
Alignment explanation
Indices: 78372037--78372192 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
78372027 AAATTGTACA
* *
78372037 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
78372101 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
78372118 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
78372183 TGCGAGTTGA
65 TGCGAATTGA
78372193 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:78372204 original size:82 final size:81
Alignment explanation
Indices: 78372033--78372213 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
78372023 GATTAAATTG
* *
78372033 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
78372098 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
78372114 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
78372178 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
78372196 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
78372214 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:78379737 original size:147 final size:145
Alignment explanation
Indices: 78379470--78379778 Score: 564
Period size: 147 Copynumber: 2.1 Consensus size: 145
78379460 CTTTAAACTT
*
78379470 ACACACTTAGTGCCATGCATTTCAAGTTCGCTCACTTACCTTTTCCGCTATCCAAAATCGACTCG
1 ACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTATCCAAAATCGACTCG
*
78379535 GTAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGC
66 ATAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGC
78379600 TTAATAATCAACCACTC
131 TTAATAATCAACCA--C
*
78379617 ACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCG
1 ACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTATCCAAAATCGACTCG
78379682 ATAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGC
66 ATAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGC
78379747 TTAATAATCAACCAC
131 TTAATAATCAACCAC
*
78379762 GCACACTTAGTGCCATG
1 ACACACTTAGTGCCATG
78379779 TACTTTAAAC
Statistics
Matches: 158, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
145 17 0.11
147 141 0.89
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (145 bp):
ACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTATCCAAAATCGACTCG
ATAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGC
TTAATAATCAACCAC
Found at i:78379795 original size:29 final size:30
Alignment explanation
Indices: 78379756--78379834 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
78379746 CTTAATAATC
78379756 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
78379786 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
78379815 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
78379835 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:78387793 original size:29 final size:29
Alignment explanation
Indices: 78387730--78387797 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
78387720 TAATCAACCG
78387730 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
78387759 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
78387788 CGCACACTTA
1 CGCACACTTA
78387798 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:78387967 original size:29 final size:29
Alignment explanation
Indices: 78387904--78387971 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
78387894 TAATCAACCA
*
78387904 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
78387933 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
78387962 CGCACACTTA
1 CGCACACTTA
78387972 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:78388112 original size:29 final size:30
Alignment explanation
Indices: 78388073--78388151 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
78388063 CTTAATAATC
78388073 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
* *
78388103 AACTCGCACACTTAGTG--TTGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
78388132 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
78388152 ATCTCATGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:78388145 original size:174 final size:174
Alignment explanation
Indices: 78387617--78388119 Score: 934
Period size: 174 Copynumber: 2.9 Consensus size: 174
78387607 AACTCAAGGT
* * *
78387617 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
*
78387682 GAAAATATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCAT
66 G-AAA-ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCAT
*
78387747 GCACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
129 GTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
78387793 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
78387858 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
78387923 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
78387967 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
78388032 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
*
78388097 ACTTTAAACTCGCACACTTAGTG
131 ACTTTAAACTCACACACTTAGTG
78388120 TTGTACAATT
Statistics
Matches: 321, Mismatches: 6, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
174 255 0.79
175 3 0.01
176 63 0.20
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:78389860 original size:46 final size:46
Alignment explanation
Indices: 78389793--78389910 Score: 132
Period size: 46 Copynumber: 2.5 Consensus size: 46
78389783 GCAGCCAATG
* *
78389793 CATGTCCCAGACATGTCTTACACTCGC-TTACGTCTCGAGGCCGAT-A
1 CATGT-CCAGACATGTCTTACACTAGCACT-CGTCTCGAGGCCGATGA
* * *
78389839 CATGTGCCAGACATGTCTTACACTAGCACTCGTCTCGATGCCGGTGC
1 CATGT-CCAGACATGTCTTACACTAGCACTCGTCTCGAGGCCGATGA
78389886 CATGTCCTAGACATGGTCTTACACT
1 CATGTCC-AGACAT-GTCTTACACT
78389911 GGTTCTCATA
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
46 40 0.65
47 12 0.19
48 10 0.16
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.27
Consensus pattern (46 bp):
CATGTCCAGACATGTCTTACACTAGCACTCGTCTCGAGGCCGATGA
Found at i:78391415 original size:26 final size:27
Alignment explanation
Indices: 78391332--78391515 Score: 182
Period size: 27 Copynumber: 7.0 Consensus size: 27
78391322 CCTACCCTAC
* * *
78391332 AGGGGTATCTC-GATAATTTTGCAAATC
1 AGGGGTATTTCAG-TAATTTTACAAATT
* * *
78391359 GGGGGTATTTCAGTAATTTCACAAATC
1 AGGGGTATTTCAGTAATTTTACAAATT
78391386 AGGGGTATTTCAGTAA-TTTACAAATT
1 AGGGGTATTTCAGTAATTTTACAAATT
*
78391412 AGGGGTATTTTAGTAATTTTACAAATT
1 AGGGGTATTTCAGTAATTTTACAAATT
* * *
78391439 CA-GGGT-TTTTA-TAATTTCAAAAATT
1 -AGGGGTATTTCAGTAATTTTACAAATT
***
78391464 AGGGGTATTTCAGTAATTTTACAACCC
1 AGGGGTATTTCAGTAATTTTACAAATT
*
78391491 A-GGGTATTTCAATAATTTTACAAAT
1 AGGGGTATTTCAGTAATTTTACAAAT
78391516 CGGGGGTCTT
Statistics
Matches: 132, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
24 1 0.01
25 16 0.12
26 53 0.40
27 60 0.45
28 2 0.02
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (27 bp):
AGGGGTATTTCAGTAATTTTACAAATT
Found at i:78391475 original size:78 final size:78
Alignment explanation
Indices: 78391372--78391515 Score: 209
Period size: 78 Copynumber: 1.8 Consensus size: 78
78391362 GGTATTTCAG
* ** * *
78391372 TAATTTCACAAATCAGGGGTATTTCAGTAA-TTTACAAATTAGGGGTATTTTAGTAATTTTACAA
1 TAATTTCAAAAATCAGGGGTATTTCAGTAATTTTACAAACCA-GGGTATTTCAATAATTTTACAA
78391436 ATTCAGGGTTTTTA
65 ATTCAGGGTTTTTA
* *
78391450 TAATTTCAAAAATTAGGGGTATTTCAGTAATTTTACAACCCAGGGTATTTCAATAATTTTACAAA
1 TAATTTCAAAAATCAGGGGTATTTCAGTAATTTTACAAACCAGGGTATTTCAATAATTTTACAAA
78391515 T
66 T
78391516 CGGGGGTCTT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 50 0.86
79 8 0.14
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (78 bp):
TAATTTCAAAAATCAGGGGTATTTCAGTAATTTTACAAACCAGGGTATTTCAATAATTTTACAAA
TTCAGGGTTTTTA
Found at i:78391479 original size:52 final size:53
Alignment explanation
Indices: 78391360--78391508 Score: 189
Period size: 52 Copynumber: 2.8 Consensus size: 53
78391350 TTGCAAATCG
* *
78391360 GGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTCAGTAATTTACAAATTA
1 GGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCAGTAATTTAAAAATTA
* *
78391413 GGGGTATTTTAGTAATTTTACAAATTCA-GGGT-TTTTA-TAATTTCAAAAATTA
1 GGGGTATTTCAGTAATTTTACAAA-TCAGGGGTATTTCAGTAATTT-AAAAATTA
** *
78391465 GGGGTATTTCAGTAATTTTACAACCCA-GGGTATTTCAATAATTT
1 GGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCAGTAATTT
78391509 TACAAATCGG
Statistics
Matches: 84, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
51 12 0.14
52 37 0.44
53 32 0.38
54 3 0.04
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (53 bp):
GGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCAGTAATTTAAAAATTA
Found at i:78394928 original size:20 final size:20
Alignment explanation
Indices: 78394894--78394938 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
78394884 AGGGACTAAA
* *
78394894 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
* *
78394914 ATGAAAAATTCTAAACTTTT
1 ATGAAAAATTCTAAAATTTG
78394934 ATGAA
1 ATGAA
78394939 TACATGTGCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.47, C:0.04, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:78419775 original size:27 final size:27
Alignment explanation
Indices: 78419736--78420040 Score: 371
Period size: 27 Copynumber: 11.3 Consensus size: 27
78419726 GCGTACTTGA
*
78419736 ACCCTCATGTGATAAAATGATGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
*
78419763 ACCCTCATCTGATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* * *
78419790 ACCCTTATGTGA-ACAAATTACAATTTT
1 ACCCTCATGTGATA-AAATGACGATTTT
*
78419817 ACCCTCATGTGATAAAATGACAATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
78419844 ACCC-CTATGTGATAAAATGACGATTTT
1 ACCCTC-ATGTGATAAAATGACGATTTT
* *
78419871 ACCCTTATGTGATAAAATAACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* *
78419898 ACCCTCATATGATAAAATGACAATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* *
78419925 ACCCTTATGTAATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* * * *
78419952 GCCCTTATGTGATAAAATAATGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* *
78419979 ACCATAATGTGATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* * * *
78420006 GCCCTTATATGATAAAATGATGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
*
78420033 GCCCTCAT
1 ACCCTCAT
78420041 AGGGTAAAAT
Statistics
Matches: 240, Mismatches: 34, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
26 2 0.01
27 237 0.99
28 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (27 bp):
ACCCTCATGTGATAAAATGACGATTTT
Found at i:78420050 original size:81 final size:81
Alignment explanation
Indices: 78419736--78420037 Score: 426
Period size: 81 Copynumber: 3.7 Consensus size: 81
78419726 GCGTACTTGA
** * *
78419736 ACCCTCATGTGATAAAATGATGATTTTACCCTCATCTGATAAAATGACGATTTTACCCTTATGTG
1 ACCCTCATGTGATAAAATGACAATTTTACCCTTATGTGATAAAATGACGATTTTACCCTTATGTG
* *
78419801 A-ACAAATTACAATTTT
66 ATA-AAATAACGATTTT
*
78419817 ACCCTCATGTGATAAAATGACAATTTTACCCCTATGTGATAAAATGACGATTTTACCCTTATGTG
1 ACCCTCATGTGATAAAATGACAATTTTACCCTTATGTGATAAAATGACGATTTTACCCTTATGTG
78419882 ATAAAATAACGATTTT
66 ATAAAATAACGATTTT
* * *
78419898 ACCCTCATATGATAAAATGACAATTTTACCCTTATGTAATAAAATGACGATTTTGCCCTTATGTG
1 ACCCTCATGTGATAAAATGACAATTTTACCCTTATGTGATAAAATGACGATTTTACCCTTATGTG
*
78419963 ATAAAATAATGATTTT
66 ATAAAATAACGATTTT
* * * * * * *
78419979 ACCATAATGTGATAAAATGACGATTTTGCCCTTATATGATAAAATGATGATTTTGCCCT
1 ACCCTCATGTGATAAAATGACAATTTTACCCTTATGTGATAAAATGACGATTTTACCCT
78420038 CATAGGGTAA
Statistics
Matches: 200, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
81 199 1.00
82 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (81 bp):
ACCCTCATGTGATAAAATGACAATTTTACCCTTATGTGATAAAATGACGATTTTACCCTTATGTG
ATAAAATAACGATTTT
Found at i:78420064 original size:27 final size:26
Alignment explanation
Indices: 78420038--78420133 Score: 111
Period size: 27 Copynumber: 3.6 Consensus size: 26
78420028 ATTTTGCCCT
*
78420038 CATAGGGTAAAATGATCGAAACACCC
1 CATAGGGTAAAATGATCGAAAAACCC
* * *
78420064 TCATAAGGTAAAATGACCGAAATATCCC
1 -CATAGGGTAAAATGATCGAAA-AACCC
*
78420092 CATAGGGTAGAATGATCGAAAAACCC
1 CATAGGGTAAAATGATCGAAAAACCC
*
78420118 CTGTAGGGTAAAATGA
1 C-ATAGGGTAAAATGA
78420134 CTGTAATACC
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 5 0.09
27 49 0.86
28 3 0.05
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.19
Consensus pattern (26 bp):
CATAGGGTAAAATGATCGAAAAACCC
Found at i:78420144 original size:27 final size:26
Alignment explanation
Indices: 78420040--78420161 Score: 86
Period size: 27 Copynumber: 4.5 Consensus size: 26
78420030 TTTGCCCTCA
* *
78420040 TAGGGTAAAATGA-TCGAAACACCCTCA
1 TAGGGTAAAATGACT-GAAATACCC-CG
* * *
78420067 TAAGGTAAAATGACCGAAATATCCCCA
1 TAGGGTAAAATGACTGAAATA-CCCCG
* *
78420094 TAGGGTAGAATGA-TCGAAAAACCCCTG
1 TAGGGTAAAATGACT-GAAATACCCC-G
*
78420121 TAGGGTAAAATGACTGTAATACCCCGG
1 TAGGGTAAAATGACTGAAATACCCC-G
* *
78420148 AAAGGTAAAATGAC
1 TAGGGTAAAATGAC
78420162 AGATTTGTTC
Statistics
Matches: 76, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
26 4 0.05
27 68 0.89
28 4 0.05
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.19
Consensus pattern (26 bp):
TAGGGTAAAATGACTGAAATACCCCG
Found at i:78420160 original size:54 final size:54
Alignment explanation
Indices: 78420038--78420160 Score: 126
Period size: 54 Copynumber: 2.3 Consensus size: 54
78420028 ATTTTGCCCT
* *
78420038 CATAGGGTAAAATGATCGAAACACCCTCATAAGGTAAAATGACCGAAATATCCC
1 CATAAGGTAAAATGATCGAAAAACCCTCATAAGGTAAAATGACCGAAATATCCC
* * * * * *
78420092 CATAGGGTAGAATGATCGAAAAACCC-CTGTAGGGTAAAATGACTGTAATA-CCC
1 CATAAGGTAAAATGATCGAAAAACCCTC-ATAAGGTAAAATGACCGAAATATCCC
78420145 CGGA-AAGGTAAAATGA
1 C--ATAAGGTAAAATGA
78420161 CAGATTTGTT
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
53 5 0.09
54 52 0.90
55 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.19
Consensus pattern (54 bp):
CATAAGGTAAAATGATCGAAAAACCCTCATAAGGTAAAATGACCGAAATATCCC
Found at i:78420527 original size:18 final size:19
Alignment explanation
Indices: 78420504--78420555 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
78420494 TCTGCTTGCA
78420504 TACTGCACTGATTACT-GT
1 TACTGCACTGATTACTGGT
* *
78420522 TACTGCATTGATCA-TGGT
1 TACTGCACTGATTACTGGT
*
78420540 TACTACACTGATTACT
1 TACTGCACTGATTACT
78420556 ATTATTGAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
17 1 0.04
18 25 0.93
19 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.38
Consensus pattern (19 bp):
TACTGCACTGATTACTGGT
Found at i:78420683 original size:34 final size:34
Alignment explanation
Indices: 78420552--78420683 Score: 165
Period size: 34 Copynumber: 3.9 Consensus size: 34
78420542 CTACACTGAT
* * * *
78420552 TACTATTATTGAAAAGGGCTAAAGCCTAGACTGC
1 TACTGTTACTGAAATGGGCTAAAGCCCAGACTGC
* *
78420586 TACTATTACTGAAATGGGCTAAAACCCAGACTGC
1 TACTGTTACTGAAATGGGCTAAAGCCCAGACTGC
*
78420620 TACTGTTACTGAAATGGGCTAAAGTCCAGACTGC
1 TACTGTTACTGAAATGGGCTAAAGCCCAGACTGC
* * * *
78420654 TATTGTTACTGATATGGGCTTAGGCCCAGA
1 TACTGTTACTGAAATGGGCTAAAGCCCAGA
78420684 ATATATTTGC
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 86 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (34 bp):
TACTGTTACTGAAATGGGCTAAAGCCCAGACTGC
Found at i:78421742 original size:159 final size:155
Alignment explanation
Indices: 78421492--78421960 Score: 581
Period size: 157 Copynumber: 3.0 Consensus size: 155
78421482 TTGAAAGGAG
*
78421492 AAAGTTTAGATTTTTAAAAATAATAAAAAAAAG-TTTTTTAGTCATTTTAAAGGAAAGTTTAAAT
1 AAAGTTTAGATTTTT--AAA-AAT-AAAAAATGTTTTTTTAGTCATTTTAAAGGAAAGTTTAAAT
*
78421556 TTTTGAAATAAAG-TTTGATTTTTTTTTTCAACTATTTCGAAATAAAAGCTTTGATCTTTAAGAA
62 TTTT-AAA-AAAGTTTTGATTTTTTTTTTCAACTATTTCGAAATAAAAGCTTTGATATTTAAGAA
78421620 AAGTAGTGATTTTTTAAAAGAAAAAAAACAA
125 AAGTAGTGATTTTTTAAAAGAAAAAAAACAA
* * *
78421651 AAAGTTTAGATTTTTAAAAATAAAAATTTGTTTTTTTAGTTATTTTAAAGGAAAGTTTAAAAATT
1 AAAGTTTAGATTTTTAAAAATAAAAA-ATGTTTTTTTAGTCATTTTAAAGGAAAGTTT-AAATTT
* * * * *
78421716 TTAAACAGAGTTTTGACTTTTCTTTTTCAATTATTTCGAAATAAAAACTTTAATATTTAAGAAAA
64 TTAAA-AAAGTTTTGA-TTTTTTTTTTCAACTATTTCGAAATAAAAGCTTTGATATTTAAGAAAA
* *
78421781 GTAGTGATTTTTT-AAAG-AAAAAAAGAG
127 GTAGTGATTTTTTAAAAGAAAAAAAACAA
* *
78421808 AAAGTTTAGATTTTTAAAAATAAAAACTATTTTTTTAGTCATTTTAAAGGAAAGTTTAAATTTTT
1 AAAGTTTAGATTTTTAAAAATAAAAAATGTTTTTTTAGTCATTTTAAAGGAAAGTTTAAATTTTT
* * * *
78421873 AAAATAA-TTTT-TTTTATTTTTTTCAACTATTTTGAAATAAAAGCTTTGATTTTTTTTTAAAAA
66 AAAA-AAGTTTTGATTT-TTTTTTTCAACTATTTCGAAATAAAAGCTTTGA----TATTTAAGAA
78421936 AAGTAGTGATTTTTTTAAAAGAAAA
125 AAGTAGTGA-TTTTTTAAAAGAAAA
78421961 CTTTGATTTT
Statistics
Matches: 270, Mismatches: 26, Indels: 27
0.84 0.08 0.08
Matches are distributed among these distances:
152 3 0.01
153 28 0.10
154 5 0.02
155 16 0.06
156 32 0.12
157 86 0.32
158 22 0.08
159 75 0.28
160 3 0.01
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.43
Consensus pattern (155 bp):
AAAGTTTAGATTTTTAAAAATAAAAAATGTTTTTTTAGTCATTTTAAAGGAAAGTTTAAATTTTT
AAAAAAGTTTTGATTTTTTTTTTCAACTATTTCGAAATAAAAGCTTTGATATTTAAGAAAAGTAG
TGATTTTTTAAAAGAAAAAAAACAA
Found at i:78421936 original size:22 final size:23
Alignment explanation
Indices: 78421902--78421970 Score: 63
Period size: 23 Copynumber: 3.0 Consensus size: 23
78421892 TTTTCAACTA
* *
78421902 TTTTGAAATAAAAGCTTTGATTT
1 TTTTTAAAAAAAAGCTTTGATTT
* *
78421925 TTTTTTAAAAAAAG-TAGTGA-TT
1 TTTTTAAAAAAAAGCT-TTGATTT
78421947 TTTTTAAAAGAAAA-CTTTGATTT
1 TTTTTAAAA-AAAAGCTTTGATTT
78421970 T
1 T
78421971 GAACACAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
22 14 0.39
23 22 0.61
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.48
Consensus pattern (23 bp):
TTTTTAAAAAAAAGCTTTGATTT
Found at i:78421937 original size:23 final size:23
Alignment explanation
Indices: 78421902--78421970 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 23
78421892 TTTTCAACTA
*
78421902 TTTTGAAATAAAAGCTTTGATTTT
1 TTTTTAAA-AAAAGCTTTGATTTT
*
78421926 TTTTTAAAAAAAG-TAGTGA--TT
1 TTTTTAAAAAAAGCT-TTGATTTT
*
78421947 TTTTTAAAAGAAAACTTTGATTTT
1 TTTTTAAAA-AAAGCTTTGATTTT
78421971 GAACACAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
21 11 0.31
22 7 0.19
23 9 0.25
24 9 0.25
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.48
Consensus pattern (23 bp):
TTTTTAAAAAAAGCTTTGATTTT
Found at i:78422487 original size:19 final size:20
Alignment explanation
Indices: 78422443--78422490 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
78422433 TTATACCATA
78422443 TATATTTATTTTCAATTATG
1 TATATTTATTTTCAATTATG
*
78422463 TA-ATTTATTTT-AATGT-TT
1 TATATTTATTTTCAAT-TATG
78422481 TATATTTATT
1 TATATTTATT
78422491 CACGCTTGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 6 0.24
19 17 0.68
20 2 0.08
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (20 bp):
TATATTTATTTTCAATTATG
Found at i:78424595 original size:18 final size:17
Alignment explanation
Indices: 78424572--78424609 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
78424562 TTCGCATTTC
78424572 TTTTCATTTGACTTTATT
1 TTTTCA-TTGACTTTATT
*
78424590 TTTTCATTGACTTTGTT
1 TTTTCATTGACTTTATT
78424607 TTT
1 TTT
78424610 CTTGTGTCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.13, C:0.11, G:0.08, T:0.68
Consensus pattern (17 bp):
TTTTCATTGACTTTATT
Found at i:78432346 original size:98 final size:98
Alignment explanation
Indices: 78432172--78432357 Score: 266
Period size: 98 Copynumber: 1.9 Consensus size: 98
78432162 TGAGAAAAAG
* * *
78432172 ATTAGTGTTTTAAAAGTTTTTGGTGACCCAGAGTTAGTTGTTTACCAATTAAGAGGAGAATGGGA
1 ATTAGTGTTTTAAAAGTTTTTGGTGACCCAGAATTAGTTGTTTACCAATTAAAAAGAGAATGGGA
* * *
78432237 AATAAGGGATTCCAAACTGATTCCAAACAAGGC
66 AACAAGAGATTCCAAACTAATTCCAAACAAGGC
** *
78432270 ATTAGTGTTTTAAAAGTTTTTGGTGACTTA-ACATTAGTTGTTTACTAATTAAAAAGAGAATGGG
1 ATTAGTGTTTTAAAAGTTTTTGGTGACCCAGA-ATTAGTTGTTTACCAATTAAAAAGAGAATGGG
*
78432334 AAACAATAGATTCCAAACTAATTC
65 AAACAAGAGATTCCAAACTAATTC
78432358 ACTATCAAAC
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
97 1 0.01
98 76 0.99
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.33
Consensus pattern (98 bp):
ATTAGTGTTTTAAAAGTTTTTGGTGACCCAGAATTAGTTGTTTACCAATTAAAAAGAGAATGGGA
AACAAGAGATTCCAAACTAATTCCAAACAAGGC
Found at i:78438028 original size:19 final size:19
Alignment explanation
Indices: 78438004--78438060 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
78437994 TGGAAGCATG
78438004 TGGACTTGAATATGGTATT
1 TGGACTTGAATATGGTATT
78438023 TGGAC-T--AT-T-GT-TT
1 TGGACTTGAATATGGTATT
*
78438036 TAGACTTGAATATGGTATT
1 TGGACTTGAATATGGTATT
78438055 TGGACT
1 TGGACT
78438061 ATTGTTTTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
13 6 0.20
14 3 0.10
15 1 0.03
16 4 0.13
17 1 0.03
18 3 0.10
19 12 0.40
ACGTcount: A:0.25, C:0.07, G:0.25, T:0.44
Consensus pattern (19 bp):
TGGACTTGAATATGGTATT
Found at i:78438043 original size:32 final size:32
Alignment explanation
Indices: 78438006--78438072 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
78437996 GAAGCATGTG
78438006 GACTTGAATATGGTATTTGGACTATTGTTTTA
1 GACTTGAATATGGTATTTGGACTATTGTTTTA
78438038 GACTTGAATATGGTATTTGGACTATTGTTTTA
1 GACTTGAATATGGTATTTGGACTATTGTTTTA
78438070 GAC
1 GAC
78438073 ATTTTGATGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.25, C:0.07, G:0.22, T:0.45
Consensus pattern (32 bp):
GACTTGAATATGGTATTTGGACTATTGTTTTA
Found at i:78444297 original size:46 final size:46
Alignment explanation
Indices: 78444200--78444418 Score: 207
Period size: 46 Copynumber: 4.8 Consensus size: 46
78444190 ATCCGTGCCA
*
78444200 ATGCATGTCCCAGACATGTTTTACACTAGG---ACATCTCGTA-GCCG
1 ATGCATGTCCCAGACATGTCTTACACT-GGCTTACATCTCG-AGGCCG
78444244 ATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCG
* * * * * *
78444290 ATGCATGTCCCAGACATGTCTTAAACTAGCTCT-CGTCTCAATGCCA
1 ATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCCG
* * * * * *
78444336 ATGCATGTCCTAAACATGTCTTACACTAGCCTTTCATAAT-GTGGCCG
1 ATGCATGTCCCAGACATGTCTTACACT-GGCTTACAT-CTCGAGGCCG
* * *
78444383 ATGCATGTCGCAGACATGTCTTACACTAGCTCACAT
1 ATGCATGTCCCAGACATGTCTTACACTGGCTTACAT
78444419 AACACTAGTG
Statistics
Matches: 142, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
43 2 0.01
44 26 0.18
45 1 0.01
46 80 0.56
47 32 0.23
48 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCG
Found at i:78444402 original size:93 final size:92
Alignment explanation
Indices: 78444244--78444414 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 92
78444234 CTCGTAGCCG
* * *
78444244 ATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCAGACATGT
1 ATGCATGTCCCAAACATGTCTTACACTGCCTTACATATCGAGGCCGATGCATGTCCCAGACATGT
78444309 CTTAAACTAGCTCTCGTCTCAATGCCA
66 CTTAAACTAGCTCTCGTCTCAATGCCA
* * * *
78444336 ATGCATGTCCTAAACATGTCTTACACTAGCCTTTCATAAT-GTGGCCGATGCATGTCGCAGACAT
1 ATGCATGTCCCAAACATGTCTTACACT-GCCTTACAT-ATCGAGGCCGATGCATGTCCCAGACAT
*
78444400 GTCTTACACTAGCTC
64 GTCTTAAACTAGCTC
78444415 ACATAACACT
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
92 25 0.36
93 43 0.62
94 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (92 bp):
ATGCATGTCCCAAACATGTCTTACACTGCCTTACATATCGAGGCCGATGCATGTCCCAGACATGT
CTTAAACTAGCTCTCGTCTCAATGCCA
Found at i:78449814 original size:48 final size:48
Alignment explanation
Indices: 78449742--78449866 Score: 171
Period size: 48 Copynumber: 2.6 Consensus size: 48
78449732 TATCGATATA
* *
78449742 GATGCCATATCCTAGATATGGTCTTACACAGGCTCTCATATATCCATGCC
1 GATG-CATGTCCTAGACAT-GTCTTACACAGGCTCTCATATATCCATGCC
** *
78449792 GATGCATGT-CTCAGACATGTCTTACATTGGCTCTCATATATCTATGCC
1 GATGCATGTCCT-AGACATGTCTTACACAGGCTCTCATATATCCATGCC
78449840 GATGCATGTCCTAGACATGTCTTACAC
1 GATGCATGTCCTAGACATGTCTTACAC
78449867 TAGCTCACAT
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
48 52 0.78
49 11 0.16
50 4 0.06
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (48 bp):
GATGCATGTCCTAGACATGTCTTACACAGGCTCTCATATATCCATGCC
Found at i:78450836 original size:26 final size:26
Alignment explanation
Indices: 78450785--78450837 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
78450775 AAGCTGTTAC
*
78450785 ACTGTTATTGGCAGCTTTGCTGCGAT
1 ACTGTTATTGGCAGCCTTGCTGCGAT
78450811 ACTGTTATTGGCAGCCTTGCTGCGAT
1 ACTGTTATTGGCAGCCTTGCTGCGAT
78450837 A
1 A
78450838 TAGATGTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.17, C:0.21, G:0.26, T:0.36
Consensus pattern (26 bp):
ACTGTTATTGGCAGCCTTGCTGCGAT
Found at i:78454561 original size:47 final size:48
Alignment explanation
Indices: 78454466--78454736 Score: 262
Period size: 48 Copynumber: 5.7 Consensus size: 48
78454456 TTAATGAGGT
* **
78454466 CCCGTGTAAGACCATGTCTGGGACATGGCATTGGCGTTGATATGTGAG
1 CCCGTGTAAGACCATGTCTAGGACATGGCATCAGCGTTGATATGTGAG
* * * *
78454514 CCCGTGTAAGACCATGTCT-TGACATGGCAACAGCATTGATATATGAG
1 CCCGTGTAAGACCATGTCTAGGACATGGCATCAGCGTTGATATGTGAG
* * * * *
78454561 CCCGTGTAAGACCATCT-TTGAGACATGGCATCTGTGTTAATATGTGAG
1 CCCGTGTAAGACCATGTCTAG-GACATGGCATCAGCGTTGATATGTGAG
* * *
78454609 CCAGTATAAGACCATGTCTAGGACATGGCAT-TGCCGTTGATATGTGAG
1 CCCGTGTAAGACCATGTCTAGGACATGGCATCAG-CGTTGATATGTGAG
* * * * * * *
78454657 CCAGAGCAAGACCATGTTTGGGACATGGTATCAGCGTTGATATGTGTG
1 CCCGTGTAAGACCATGTCTAGGACATGGCATCAGCGTTGATATGTGAG
** *
78454705 CTAGTGTAAGACCATGT-AAGGGACATGGCATC
1 CCCGTGTAAGACCATGTCTA-GGACATGGCATC
78454737 GACACTGACA
Statistics
Matches: 183, Mismatches: 34, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
46 1 0.01
47 40 0.22
48 139 0.76
49 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (48 bp):
CCCGTGTAAGACCATGTCTAGGACATGGCATCAGCGTTGATATGTGAG
Found at i:78454682 original size:96 final size:95
Alignment explanation
Indices: 78454473--78454735 Score: 289
Period size: 96 Copynumber: 2.8 Consensus size: 95
78454463 GGTCCCGTGT
* * *
78454473 AAGACCATGTCTGGGACATGGCAT-TGGCGTTGATATGTGAGCCCGTGTAAGACCATGTCT-TGA
1 AAGACCATGTTTGGGACATGGCATCT-GCGTTGATATGTGAGCCAGTGTAAGACCATGTCTAGGA
* * * *
78454536 CATGGCAACAGCATTGATATATGAGCCCGTGT
65 CATGGC-ATAGCATTGATATATGAGCCAGAGC
* * * * *
78454568 AAGACCATCTTTGAGACATGGCATCTGTGTTAATATGTGAGCCAGTATAAGACCATGTCTAGGAC
1 AAGACCATGTTTGGGACATGGCATCTGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTAGGAC
* * *
78454633 ATGGCATTGCCGTTGATATGTGAGCCAGAGC
66 ATGGCATAG-CATTGATATATGAGCCAGAGC
* * * * *
78454664 AAGACCATGTTTGGGACATGGTATCAGCGTTGATATGTGTGCTAGTGTAAGACCATGT-AAGGGA
1 AAGACCATGTTTGGGACATGGCATCTGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTA-GGA
78454728 CATGGCAT
65 CATGGCAT
78454736 CGACACTGAC
Statistics
Matches: 139, Mismatches: 25, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
95 54 0.39
96 85 0.61
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (95 bp):
AAGACCATGTTTGGGACATGGCATCTGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTAGGAC
ATGGCATAGCATTGATATATGAGCCAGAGC
Found at i:78462451 original size:48 final size:47
Alignment explanation
Indices: 78462388--78462606 Score: 262
Period size: 48 Copynumber: 4.6 Consensus size: 47
78462378 GAGATCCCGA
* *
78462388 GTAAGACCATGTCTGGGACATGGCATCAGTGTTGATATGTGATCCCTT
1 GTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGA-CCATT
* * *
78462436 GTAATACCATGTCTGGGACATGGCGTC-GACGTTGATATATGAGCC-TGT
1 GTAAGACCATGTCTGGGACATGGCATCAG-CGTTGATATGTGA-CCAT-T
* * *
78462484 GTAAGACCATGTCTGAGACATGGCATTAGCGTTGATATGTGAGCCAAT
1 GTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGA-CCATT
** *
78462532 GTAAGACCATGTCTGGGACATGGCATTGGCGTTGATATGTGAACCAGT
1 GTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTG-ACCATT
*
78462580 GTAAGACCATGTCTGGGACATTGCATC
1 GTAAGACCATGTCTGGGACATGGCATC
78462607 GGCACTGACG
Statistics
Matches: 150, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
47 2 0.01
48 146 0.97
49 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (47 bp):
GTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGACCATT
Found at i:78462552 original size:96 final size:96
Alignment explanation
Indices: 78462388--78462606 Score: 312
Period size: 96 Copynumber: 2.3 Consensus size: 96
78462378 GAGATCCCGA
* * ** *
78462388 GTAAGACCATGTCTGGGACATGGCATCAGTGTTGATATGTGATCCCTTGTAATACCATGTCTGGG
1 GTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGAGCCAATGTAAGACCATGTCTGGG
* * *
78462453 ACATGGCGTCGACGTTGATATATGAGCCTGT
66 ACATGGCATCGACGTTGATATATGAACCAGT
* *
78462484 GTAAGACCATGTCTGAGACATGGCATTAGCGTTGATATGTGAGCCAATGTAAGACCATGTCTGGG
1 GTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGAGCCAATGTAAGACCATGTCTGGG
* * *
78462549 ACATGGCATTGGCGTTGATATGTGAACCAGT
66 ACATGGCATCGACGTTGATATATGAACCAGT
*
78462580 GTAAGACCATGTCTGGGACATTGCATC
1 GTAAGACCATGTCTGGGACATGGCATC
78462607 GGCACTGACG
Statistics
Matches: 107, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
96 107 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (96 bp):
GTAAGACCATGTCTGGGACATGGCATCAGCGTTGATATGTGAGCCAATGTAAGACCATGTCTGGG
ACATGGCATCGACGTTGATATATGAACCAGT
Found at i:78462661 original size:67 final size:67
Alignment explanation
Indices: 78462560--78462687 Score: 211
Period size: 67 Copynumber: 1.9 Consensus size: 67
78462550 CATGGCATTG
* *
78462560 GCGTTGATATGTGAACCAGTGTAAGACCATGTCTGGGACATTGCATCGGCACTGACGTGAGGCAT
1 GCGTTGATATGTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGACATGAGGCAT
78462625 CA
66 CA
** *
78462627 GCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGACATGAG
1 GCGTTGATATGTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGACATGAG
78462688 ACTTTGTATA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
67 56 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (67 bp):
GCGTTGATATGTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGACATGAGGCAT
CA
Found at i:78467199 original size:110 final size:110
Alignment explanation
Indices: 78467038--78467262 Score: 450
Period size: 110 Copynumber: 2.0 Consensus size: 110
78467028 CGACCATTCA
78467038 TCAATATGTTAGTCTCATAAATACATATAATCAACCTTTATCTCAATTACATACATCAGTGTATC
1 TCAATATGTTAGTCTCATAAATACATATAATCAACCTTTATCTCAATTACATACATCAGTGTATC
78467103 ATATCAAATTAATATATCATGTACATCATTTGTAACATTTCACTC
66 ATATCAAATTAATATATCATGTACATCATTTGTAACATTTCACTC
78467148 TCAATATGTTAGTCTCATAAATACATATAATCAACCTTTATCTCAATTACATACATCAGTGTATC
1 TCAATATGTTAGTCTCATAAATACATATAATCAACCTTTATCTCAATTACATACATCAGTGTATC
78467213 ATATCAAATTAATATATCATGTACATCATTTGTAACATTTCACTC
66 ATATCAAATTAATATATCATGTACATCATTTGTAACATTTCACTC
78467258 TCAAT
1 TCAAT
78467263 CATATAAACA
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 115 1.00
ACGTcount: A:0.37, C:0.19, G:0.05, T:0.38
Consensus pattern (110 bp):
TCAATATGTTAGTCTCATAAATACATATAATCAACCTTTATCTCAATTACATACATCAGTGTATC
ATATCAAATTAATATATCATGTACATCATTTGTAACATTTCACTC
Found at i:78467537 original size:24 final size:24
Alignment explanation
Indices: 78467486--78467553 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
78467476 GCTGAAACGG
* * * * *
78467486 TAAGCTCTGACGAGCTGAAAATAG
1 TAAGCTCTTACAAGCTGATAACAA
78467510 TAAGCTCTTACAAGCTGATAACAA
1 TAAGCTCTTACAAGCTGATAACAA
*
78467534 TAAGCCCTTACAAGCTGATA
1 TAAGCTCTTACAAGCTGATA
78467554 TATCAGTAAG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
TAAGCTCTTACAAGCTGATAACAA
Found at i:78474028 original size:24 final size:24
Alignment explanation
Indices: 78473927--78474046 Score: 95
Period size: 24 Copynumber: 5.0 Consensus size: 24
78473917 GAGCTATGAT
78473927 CAGTAAGCTCCTCT-TGAGCTGATAGA
1 CAGTAAGCT-CT-TATGAGCTGATA-A
*
78473953 CAATAAGCTC-TATTGAGCTGA-AA
1 CAGTAAGCTCTTA-TGAGCTGATAA
* * * * *
78473976 CGGTAAGCTCTGACGAGCTAAAAA
1 CAGTAAGCTCTTATGAGCTGATAA
*
78474000 TAGTAAGCTCTTATGAGCTGATAA
1 CAGTAAGCTCTTATGAGCTGATAA
*
78474024 CAGTATGCTCTT-TCGAGCTGATA
1 CAGTAAGCTCTTAT-GAGCTGATA
78474047 TATCGGTAAA
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
23 17 0.23
24 41 0.55
25 9 0.12
26 8 0.11
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (24 bp):
CAGTAAGCTCTTATGAGCTGATAA
Found at i:78479863 original size:23 final size:20
Alignment explanation
Indices: 78479837--78479886 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
78479827 GGATTTTTAG
78479837 TATTTGTGCATATTAGATTTATT
1 TATTTGTGC--ATT-GATTTATT
*
78479860 TATTCGTGCATTGATTTATT
1 TATTTGTGCATTGATTTATT
*
78479880 TAATTGT
1 TATTTGT
78479887 CTAATGTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 13 0.54
21 3 0.12
23 8 0.33
ACGTcount: A:0.24, C:0.06, G:0.14, T:0.56
Consensus pattern (20 bp):
TATTTGTGCATTGATTTATT
Found at i:78485682 original size:27 final size:27
Alignment explanation
Indices: 78485644--78485785 Score: 203
Period size: 27 Copynumber: 5.3 Consensus size: 27
78485634 TAAGTTGTAA
78485644 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
78485671 AATTACCGAAATACTCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
78485698 AATTACCGAAATAACCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
78485725 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
78485752 AATTACCGAGATACCCTTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
78485779 AATTACC
1 AATTACC
78485786 ATTTTACCCT
Statistics
Matches: 100, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:78486471 original size:27 final size:26
Alignment explanation
Indices: 78486427--78486478 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
78486417 CTCGCTACTA
*
78486427 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
78486454 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
78486479 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:78487004 original size:49 final size:50
Alignment explanation
Indices: 78486946--78487043 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 50
78486936 ATTTTTCTAA
*
78486946 GTTAGTTTATTTTTATTATTTTATATTCTGATTTAA-TTTTGGGTTTTAG
1 GTTAGTTTATTTTTATTATTTTATATTCTGACTTAATTTTTGGGTTTTAG
78486995 GTTAGTTTATTTTTATTATTTTATATTCTGACTTAATTTTTGGGTTTTA
1 GTTAGTTTATTTTTATTATTTTATATTCTGACTTAATTTTTGGGTTTTA
78487044 AGTTGTAATA
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 35 0.74
50 12 0.26
ACGTcount: A:0.20, C:0.03, G:0.13, T:0.63
Consensus pattern (50 bp):
GTTAGTTTATTTTTATTATTTTATATTCTGACTTAATTTTTGGGTTTTAG
Found at i:78496067 original size:30 final size:30
Alignment explanation
Indices: 78496033--78496091 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
78496023 TAATGTATGT
78496033 ATGATAGTTATATGATTGATACCGAGCCTG
1 ATGATAGTTATATGATTGATACCGAGCCTG
78496063 ATGATAGTTATATGATTGATACCGAGCCT
1 ATGATAGTTATATGATTGATACCGAGCCT
78496092 AACATCCTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.34
Consensus pattern (30 bp):
ATGATAGTTATATGATTGATACCGAGCCTG
Found at i:78496324 original size:22 final size:22
Alignment explanation
Indices: 78496275--78496326 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
78496265 GGCCTTTAGT
*
78496275 CGTTCTGTCTACGGCGTTAAGC
1 CGTTCTGTCTACGCCGTTAAGC
** *
78496297 TATTCTGTCTACGCCGTTGAGC
1 CGTTCTGTCTACGCCGTTAAGC
78496319 CGTTCTGT
1 CGTTCTGT
78496327 TGACTTAGTG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.12, C:0.27, G:0.25, T:0.37
Consensus pattern (22 bp):
CGTTCTGTCTACGCCGTTAAGC
Found at i:78499640 original size:43 final size:43
Alignment explanation
Indices: 78499576--78499664 Score: 103
Period size: 43 Copynumber: 2.1 Consensus size: 43
78499566 ATTTGTGATT
**
78499576 TTGATATGTGTTTACGAGTAAGACC-CTGTCTGGCACAG-TGGCA
1 TTGATATGTGGCTACGAGTAAGACCAC-GTCTGGCAC-GTTGGCA
*
78499619 TTGATATGTGGCTAC-ATGTAAGACCACGTCTGGGACGTTGGCA
1 TTGATATGTGGCTACGA-GTAAGACCACGTCTGGCACGTTGGCA
78499662 TTG
1 TTG
78499665 TACGAATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
42 2 0.05
43 37 0.93
44 1 0.03
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.30
Consensus pattern (43 bp):
TTGATATGTGGCTACGAGTAAGACCACGTCTGGCACGTTGGCA
Found at i:78503429 original size:30 final size:30
Alignment explanation
Indices: 78503395--78503455 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
78503385 TCCTTAACTC
78503395 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
78503425 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
78503455 A
1 A
78503456 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:78510109 original size:42 final size:42
Alignment explanation
Indices: 78509918--78510097 Score: 272
Period size: 42 Copynumber: 4.3 Consensus size: 42
78509908 GGAAAGCATC
*
78509918 CATTACATTTAGA-GCCCAAGTATGGAGGTCCATTTACTTTT
1 CATTACATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTTTT
* *
78509959 CATTACATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTT
1 CATTACATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTTTT
* * *
78510001 CATTACACTTAGAGCCCCAAATGTGGAGGTCCATTTACTTTT
1 CATTACATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTTTT
* * *
78510043 CATTGCATTTAAAGGCCCAAGTGTGGAGGTCCATTAACTTTT
1 CATTACATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTTTT
78510085 CATTACATTTAGA
1 CATTACATTTAGA
78510098 TACCTAGGTG
Statistics
Matches: 122, Mismatches: 16, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
41 13 0.11
42 109 0.89
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (42 bp):
CATTACATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTTTT
Found at i:78510154 original size:154 final size:154
Alignment explanation
Indices: 78509956--78510247 Score: 431
Period size: 154 Copynumber: 1.9 Consensus size: 154
78509946 TCCATTTACT
* * *
78509956 TTTCATTACATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTCATTACACTTAGAGCCCCAA
1 TTTCATTACATTTAGAAGCCCAGATGTAGAGGTCCATTCACTTTTCATTACACTTAGAGCCCCAA
* * *
78510021 ATGTGGAGGTCCATTTACTTTTCATTGCATTTAAAGGCCCAAGTGTGGAGGTCCATTAACTTTTC
66 ATGTGAAGGTCAATTCACTTTTCATTGCATTTAAAGGCCCAAGTGTGGAGGTCCATTAACTTTTC
78510086 ATTACATTTAGATACCTAGGTGTG
131 ATTACATTTAGATACCTAGGTGTG
* * * * * *
78510110 TTTCATTGCATTTAGAAGCCCAGATGTAGAGGTTCATTTACTTTTCATTACATTTAGTGGCCCAA
1 TTTCATTACATTTAGAAGCCCAGATGTAGAGGTCCATTCACTTTTCATTACACTTAGAGCCCCAA
* * * *
78510175 GTGTGAAGGTCAATTCACTTTTCATTGCATTTAAAGGCCTAGGTGTGGAGGTCCATTTACTTTTC
66 ATGTGAAGGTCAATTCACTTTTCATTGCATTTAAAGGCCCAAGTGTGGAGGTCCATTAACTTTTC
*
78510240 ATTGCATT
131 ATTACATT
78510248 GTGTATCAAG
Statistics
Matches: 121, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
154 121 1.00
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (154 bp):
TTTCATTACATTTAGAAGCCCAGATGTAGAGGTCCATTCACTTTTCATTACACTTAGAGCCCCAA
ATGTGAAGGTCAATTCACTTTTCATTGCATTTAAAGGCCCAAGTGTGGAGGTCCATTAACTTTTC
ATTACATTTAGATACCTAGGTGTG
Found at i:78510173 original size:42 final size:41
Alignment explanation
Indices: 78510110--78510247 Score: 145
Period size: 42 Copynumber: 3.3 Consensus size: 41
78510100 CCTAGGTGTG
*
78510110 TTTCATTGCATTTAGAAGCCCAGATGTAGAGGTTCATTTACT
1 TTTCATTGCATTTAGAGGCCCAGATGT-GAGGTTCATTTACT
* * *
78510152 TTTCATTACATTTAGTGGCCCA-AGTGTGAAGG-TCAATTCACT
1 TTTCATTGCATTTAGAGGCCCAGA-TGTG-AGGTTC-ATTTACT
* * * *
78510194 TTTCATTGCATTTAAAGGCCTAGGTGTGGAGGTCCATTTACT
1 TTTCATTGCATTTAGAGGCCCAGATGT-GAGGTTCATTTACT
78510236 TTTCATTGCATT
1 TTTCATTGCATT
78510248 GTGTATCAAG
Statistics
Matches: 79, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
41 4 0.05
42 73 0.92
43 2 0.03
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (41 bp):
TTTCATTGCATTTAGAGGCCCAGATGTGAGGTTCATTTACT
Found at i:78510179 original size:70 final size:70
Alignment explanation
Indices: 78510040--78510179 Score: 178
Period size: 70 Copynumber: 2.0 Consensus size: 70
78510030 TCCATTTACT
* * *
78510040 TTTCATTGCATTTAAAGGCCCAAGTGTGGAGGTCCATTAACTTTTCATTACATTTAGATACCTAG
1 TTTCATTGCATTTAAAGGCCCAAGTGTAGAGGTCCATTAACTTTTCATTACATTTAGATACCCAA
78510105 GTGTG
66 GTGTG
* * *
78510110 TTTCATTGCATTTAGAA-GCCC-AGATGTAGAGGTTCATTTACTTTTCATTACATTTAG-TGGCC
1 TTTCATTGCATTTA-AAGGCCCAAG-TGTAGAGGTCCATTAACTTTTCATTACATTTAGAT-ACC
78510172 CAAGTGTG
63 CAAGTGTG
78510180 AAGGTCAATT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
69 3 0.05
70 56 0.92
71 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (70 bp):
TTTCATTGCATTTAAAGGCCCAAGTGTAGAGGTCCATTAACTTTTCATTACATTTAGATACCCAA
GTGTG
Found at i:78510195 original size:112 final size:112
Alignment explanation
Indices: 78509998--78510221 Score: 297
Period size: 112 Copynumber: 2.0 Consensus size: 112
78509988 TCCATTCACT
* *
78509998 TTTCATTACACTTAGAGCCCCAAATGTGGAGGTCCATTTACTTTTCATTGCATTTAAAGGCCCAA
1 TTTCATTACACTTAGAGCCCCAAATGTAGAGGTCCATTTACTTTTCATTACATTTAAAGGCCCAA
* * * *
78510063 GTGTGGAGGTCCATTAACTTTTCATTACATTTAGATACCTAGGTGTG
66 GTGTGAAGGTCAATTAACTTTTCATTACATTTAAAGACCTAGGTGTG
* * * * **
78510110 TTTCATTGCATTTAGAAG-CCCAGATGTAGAGGTTCATTTACTTTTCATTACATTTAGTGGCCCA
1 TTTCATTACACTTAG-AGCCCCAAATGTAGAGGTCCATTTACTTTTCATTACATTTAAAGGCCCA
* * *
78510174 AGTGTGAAGGTCAATTCACTTTTCATTGCATTTAAAGGCCTAGGTGTG
65 AGTGTGAAGGTCAATTAACTTTTCATTACATTTAAAGACCTAGGTGTG
78510222 GAGGTCCATT
Statistics
Matches: 96, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
112 94 0.98
113 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (112 bp):
TTTCATTACACTTAGAGCCCCAAATGTAGAGGTCCATTTACTTTTCATTACATTTAAAGGCCCAA
GTGTGAAGGTCAATTAACTTTTCATTACATTTAAAGACCTAGGTGTG
Found at i:78515558 original size:30 final size:30
Alignment explanation
Indices: 78515524--78515584 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
78515514 TCCTTAACTC
78515524 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
78515554 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
78515584 A
1 A
78515585 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:78523250 original size:94 final size:89
Alignment explanation
Indices: 78523129--78523339 Score: 241
Period size: 94 Copynumber: 2.3 Consensus size: 89
78523119 TATGTGCGCC
* *
78523129 AGTGTTAGACATGTCTGGGACATGCATCGAGCACAT-A-ATGAGAGCCAGTTTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCG-GC-C-TCAGATGAGAGCCAGTGTAAGA-CATGTCT
78523192 GGGACATGGCATCGGCATTGA-GACGA-GTGCT
62 GGGACAT-GCATCGGC--T-ACGA-GATGTGCT
* ** *
78523223 AGTGTAAGACATGTCTGGGACACGCATCGGCCTCGAGATGTTAGCCAGTGTGAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTC-AGATGAGAGCCAGTGTAAGACATGTCTGGG
*
78523288 ACATGCGTCGGCTACGAGATGTGCT
65 ACATGCATCGGCTACGAGATGTGCT
78523313 AGTGTAAGACATGTCTGGGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
78523340 GCGCACGGTT
Statistics
Matches: 104, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
89 3 0.03
90 34 0.33
91 1 0.01
92 8 0.08
93 17 0.16
94 41 0.39
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (89 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAGATGAGAGCCAGTGTAAGACATGTCTGGGA
CATGCATCGGCTACGAGATGTGCT
Found at i:78523273 original size:46 final size:44
Alignment explanation
Indices: 78523126--78523389 Score: 214
Period size: 46 Copynumber: 5.8 Consensus size: 44
78523116 AGATATGTGC
* * *
78523126 GCCAGTGTTAGACATGTCTGGGACATGCATCGAGCACAT-AATGA-GA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCG-GC-C-TCGA-GATGT
* * * *
78523172 GCCAGTTTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGA--TGT
* *
78523220 GCTAGTGTAAGACATGTCTGGGACACGCATCGGCCTCGAGATGTT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-T
* *
78523265 AGCCAGTGTGAGACATGTCTGGGACATGCGTCGG-CTACGAGATGT
1 -GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGT
* * *
78523310 GCTAGTGTAAGACATGTCTGGGACATGCAT-GCGCACGGT-TACATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCG-GC-C--TCGAGATGT
* *
78523356 GTCAGTGTAAGACATGTCTAGGACATGCATCGGC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC
78523390 ATGGTTACAT
Statistics
Matches: 180, Mismatches: 23, Indels: 30
0.77 0.10 0.13
Matches are distributed among these distances:
43 1 0.01
44 29 0.16
45 7 0.04
46 95 0.53
47 30 0.17
48 18 0.10
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.23
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT
Found at i:78523362 original size:90 final size:90
Alignment explanation
Indices: 78523129--78523389 Score: 225
Period size: 90 Copynumber: 2.9 Consensus size: 90
78523119 TATGTGCGCC
* * ** *
78523129 AGTGTTAGACATGTCTGGGACATGCATCGAGCACAT--A-ATGAGAGCCAGTTTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACACGCATCG-GC-C-TCGACATGTTAGCCAGTGTAAGA-CATGTC
*
78523191 TGGGACATGGCATCGGCATTGA-GACGA-GTGCT
62 TAGGACAT-GCATCGGC--T-ACGA-GATGTGCT
* * *
78523223 AGTGTAAGACATGTCTGGGACACGCATCGGCCTCGAGATGTTAGCCAGTGTGAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACACGCATCGGCCTCGACATGTTAGCCAGTGTAAGACATGTCTAGG
*
78523288 ACATGCGTCGGCTACGAGATGTGCT
66 ACATGCATCGGCTACGAGATGTGCT
* * *
78523313 AGTGTAAGACATGTCTGGGACATGCAT-GCGCACGGT-TACATG-T-GTCAGTGTAAGACATGTC
1 AGTGTAAGACATGTCTGGGACACGCATCG-GC-C--TCGACATGTTAGCCAGTGTAAGACATGTC
78523374 TAGGACATGCATCGGC
62 TAGGACATGCATCGGC
78523390 ATGGTTACAT
Statistics
Matches: 144, Mismatches: 14, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
89 4 0.03
90 66 0.46
91 3 0.02
92 12 0.08
93 18 0.12
94 41 0.28
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (90 bp):
AGTGTAAGACATGTCTGGGACACGCATCGGCCTCGACATGTTAGCCAGTGTAAGACATGTCTAGG
ACATGCATCGGCTACGAGATGTGCT
Found at i:78523396 original size:46 final size:43
Alignment explanation
Indices: 78523128--78523426 Score: 196
Period size: 46 Copynumber: 6.5 Consensus size: 43
78523118 ATATGTGCGC
* * *
78523128 CAGTGTTAGACATGTCTGGGACATGCATCGAGCA-C-ATAATGAGAG
1 CAGTGTAAGACATGTCTGGGACATGCATCG-GCATCGA-CAT--GTG
* *
78523173 CCAGTTTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA-GTG
1 -CAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA-T-CGAC-ATGTG
* * *
78523221 CTAGTGTAAGACATGTCTGGGACACGCATCGGCCTCGAGATGTTAG
1 C-AGTGTAAGACATGTCTGGGACATGCATCGGCATCGACATG-T-G
* * *
78523267 CCAGTGTGAGACATGTCTGGGACATGCGTCGGC-TACGAGATGTG
1 -CAGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGACATGTG
78523311 CTAGTGTAAGACATGTCTGGGACATGCAT-GCGCA-CGGTTACATGTG
1 C-AGTGTAAGACATGTCTGGGACATGCATCG-GCATC-G--ACATGTG
* * *
78523357 TCAGTGTAAGACATGTCTAGGACATGCATCGGCATGGTTACATGTCT
1 -CAGTGTAAGACATGTCTGGGACATGCATCGGCATCG--ACATGT-G
* *
78523404 CAGTGTAAGACCTGTCAGGGACA
1 CAGTGTAAGACATGTCTGGGACA
78523427 CGGCATCGTC
Statistics
Matches: 208, Mismatches: 22, Indels: 46
0.75 0.08 0.17
Matches are distributed among these distances:
43 4 0.02
44 32 0.15
45 4 0.02
46 116 0.56
47 34 0.16
48 16 0.08
51 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.24
Consensus pattern (43 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGGCATCGACATGTG
Found at i:78529461 original size:46 final size:44
Alignment explanation
Indices: 78529359--78529569 Score: 158
Period size: 46 Copynumber: 4.6 Consensus size: 44
78529349 AGAGCCAGTT
* * * *
78529359 TAAGATCATGTCTGGGACATGGCATCGGCATTGA-GACAAGTGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCGGC--T-ACGAGATGTGCCAGGG
* *
78529407 TAAAACATGTCTGGGACACGCATCGGCCT-CGAGATGTTAGCCAGGG
1 TAAGACATGTCTGGGACATGCATCGG-CTACGAGATG-T-GCCAGGG
* * * *
78529453 TGAGACATGTCTGGGACATGCGTCGGCTACGAGATGTGCTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCCAGGG
* * * **
78529497 TAAGACATGTCTGGGACATGCATAGGCT-CGGTTACATGTGTCAATG
1 TAAGACATGTCTGGGACATGCATCGGCTAC-G--AGATGTGCCAGGG
*
78529543 TAAGACATGTCTAGGACATGCATCGGC
1 TAAGACATGTCTGGGACATGCATCGGC
78529570 ACGGTTACAT
Statistics
Matches: 134, Mismatches: 21, Indels: 18
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 35 0.26
45 5 0.04
46 75 0.56
47 14 0.10
48 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (44 bp):
TAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCCAGGG
Found at i:78529606 original size:46 final size:46
Alignment explanation
Indices: 78529493--78529606 Score: 158
Period size: 46 Copynumber: 2.5 Consensus size: 46
78529483 GAGATGTGCT
* * *
78529493 AGTGTAAGACATGTCTGGGACATGCATAGGCTCGGTTACATGTGTC
1 AGTGTAAGACATGTCAGGGACATGCATAGGCACGGTTACATGTCTC
* *
78529539 AATGTAAGACATGTCTA-GGACATGCATCGGCACGGTTACATGTCTC
1 AGTGTAAGACATGTC-AGGGACATGCATAGGCACGGTTACATGTCTC
*
78529585 AGTGTAAGACCTGTCAGGGACA
1 AGTGTAAGACATGTCAGGGACA
78529607 CGGCATCGAC
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
45 1 0.02
46 58 0.98
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCAGGGACATGCATAGGCACGGTTACATGTCTC
Found at i:78538122 original size:15 final size:15
Alignment explanation
Indices: 78538104--78538146 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 15
78538094 TCCGAGACAG
78538104 AGAAATCCAAGATAA
1 AGAAATCCAAGATAA
**
78538119 AGAAACTCCCAAGATTC
1 AGAAA-T-CCAAGATAA
78538136 AGAAATCCAAG
1 AGAAATCCAAG
78538147 TTACAATACC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 10 0.42
16 2 0.08
17 12 0.50
ACGTcount: A:0.51, C:0.21, G:0.14, T:0.14
Consensus pattern (15 bp):
AGAAATCCAAGATAA
Found at i:78544428 original size:40 final size:39
Alignment explanation
Indices: 78544354--78544578 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 39
78544344 AACCCAAGTA
* *
78544354 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATG
*
78544393 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
* *
78544433 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTA---GCACAAATG
* *
78544476 CCTTCGGGACTTCGCCCGGTTATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
* * *
78544516 CCTTCGTGACTTAGCCCGGATATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATA-GCACTAGCACAAATG
78544556 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
78544579 CATCCGAATA
Statistics
Matches: 163, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
39 13 0.08
40 112 0.69
41 2 0.01
43 35 0.21
44 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATG
Found at i:78544479 original size:83 final size:80
Alignment explanation
Indices: 78544354--78544578 Score: 344
Period size: 83 Copynumber: 2.8 Consensus size: 80
78544344 AACCCAAGTA
* *
78544354 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
78544418 TCACTAGCACAAATG
66 TCACTAGCACAAATG
* * * *
78544433 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAAGGCCTTCGGGACTTCGCCCGGTTA
1 CCTTCGGGACTTAGCCCGGATATAGC-A--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
78544498 TAGTCACTAGCACAAATG
63 TAGTCACTAGCACAAATG
* *
78544516 CCTTCGTGACTTAGCCCGGATATAGGAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
78544579 CATCCGAATA
Statistics
Matches: 130, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
79 13 0.10
80 43 0.33
81 1 0.01
82 1 0.01
83 72 0.55
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:78550281 original size:40 final size:39
Alignment explanation
Indices: 78550207--78550431 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 39
78550197 AACCCAAGTA
* * *
78550207 CCTTCGGGATTTAG-CCGGATATAGCAGCTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGCA-CTAGCACAAATG
* *
78550246 CCTTCGGGTCTTAGCCGGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
* * *
78550286 CCTTCGAGACTTAGCCTGGATATAGCAACTACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTA---GCACAAATG
* *
78550329 CCTTCAGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
* * * *
78550369 CCTTTGGGACTTAGCCCAGATATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATA-GCACTAGCACAAATG
78550409 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
78550432 CATCCGAATC
Statistics
Matches: 156, Mismatches: 22, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
39 13 0.08
40 106 0.68
41 3 0.02
43 33 0.21
44 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATG
Found at i:78550333 original size:83 final size:80
Alignment explanation
Indices: 78550207--78550431 Score: 272
Period size: 83 Copynumber: 2.8 Consensus size: 80
78550197 AACCCAAGTA
* * * * * * * *
78550207 CCTTCGGGATTTAG-CCGGATATAGCAGCTCGCACAAATACCTTCGGGTCTTAGCCGGGATATAG
1 CCTTCGAGACTTAGCCCAGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
78550271 TCACTAGCACAAATG
66 TCACTAGCACAAATG
** * * *
78550286 CCTTCGAGACTTAGCCTGGATATAGCAACTACTCGTACAAATGCCTTCAGGACTTCGCCCGGATA
1 CCTTCGAGACTTAGCCCAGATATAG-AA--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
78550351 TAGTCACTAGCACAAATG
63 TAGTCACTAGCACAAATG
* * *
78550369 CCTTTGGGACTTAGCCCAGATATAGGAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGAGACTTAGCCCAGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
78550432 CATCCGAATC
Statistics
Matches: 123, Mismatches: 19, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
79 12 0.10
80 42 0.34
81 1 0.01
82 1 0.01
83 67 0.54
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGAGACTTAGCCCAGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:78553256 original size:150 final size:145
Alignment explanation
Indices: 78553010--78553464 Score: 553
Period size: 145 Copynumber: 3.1 Consensus size: 145
78553000 AAAATTTTGA
* *
78553010 TTTTTTTT-AAAAA-GAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTTAGTGATTTTA
1 TTTTTTTTAAAAAAGGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTTTGTCATTTTA
* *
78553073 AAGAAAA-TTTTAAATTTTTAAAACAATAGTTTTTTTTCAACTATTTCAAATAAAAGCTTTAATC
66 AAGAAAAGTTTT-AATTTTTAAAATAAT-TTTTTTTTTCAACTATTTCAAATAAAAGCTTTAATC
*
78553137 TTTAAGAAAAATAGTGT
129 TTTAAGAAAAATAATGT
* * *
78553154 TTCTTTTTTAAAAAAAAAGGAGAAACTTTAGGTTTTAAAAAATAAAAATTTGTTTTTTTTGTCAT
1 TT-TTTTTT---AAAAAAGGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTTTGTCAT
78553219 TTTAAAGAAAAGTTTTAATTTTTAAAATAA-TTTTTTTTTCAACTATTTCAAAGTAAAAGCTTTA
62 TTTAAAGAAAAGTTTTAATTTTTAAAATAATTTTTTTTTTCAACTATTTCAAA-TAAAAGCTTTA
78553283 ATCTTTAAGAAAAATAATGT
126 ATCTTTAAGAAAAATAATGT
* * *
78553303 TTTTTTTTAAAAATGGAGAAAGTTTAGATTTTGAAAAATAAAAATCTGTTTTTTTTAGTCA-TTT
1 TTTTTTTTAAAAAAGGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTTT-GTCATTTT
* * * *
78553367 AGAGGAAAGTTTAAATTTTTAAAATAAAATTTTGATTTTTTTTCAACTATTTCGAAAT-AAAGTT
65 AAAGAAAAGTTTTAATTTTTAAAAT--AA--TT--TTTTTTTTCAACTATTTC-AAATAAAAGCT
* * * * *
78553431 TTGATTTTTAAGAAGAGTAATAT
123 TTAATCTTTAAGAAAAATAATGT
78553454 TTTTTTTTAAA
1 TTTTTTTTAAA
78553465 GAAAACTTTG
Statistics
Matches: 272, Mismatches: 22, Indels: 27
0.85 0.07 0.08
Matches are distributed among these distances:
144 2 0.01
145 74 0.27
146 4 0.01
147 2 0.01
148 27 0.10
149 37 0.14
150 66 0.24
151 38 0.14
152 19 0.07
153 3 0.01
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (145 bp):
TTTTTTTTAAAAAAGGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTTTGTCATTTTA
AAGAAAAGTTTTAATTTTTAAAATAATTTTTTTTTTCAACTATTTCAAATAAAAGCTTTAATCTT
TAAGAAAAATAATGT
Found at i:78553468 original size:145 final size:141
Alignment explanation
Indices: 78553009--78553479 Score: 486
Period size: 150 Copynumber: 3.2 Consensus size: 141
78552999 AAAAATTTTG
* * * * *
78553009 ATTTTTTTTAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTTAGTGATTTTAA
1 ATTTTTTTT-TAAAGAGAAACTTTAGATTTTAAAAAATAAAAATCTGTTTTTTTTGTCATTTTAA
* *
78553074 AGAAAATTTTAAATTTTTAAAACAATAGTTTTTTTTCAACTATTTCAAA-TAAAAGCTTTAATCT
65 AGAAAAGTTTAAATTTTTAAAATAAT--TTTTTTTTCAACTATTTCAAAGTAAAAGCTTTAATCT
*
78553138 TTAAGAAAAATAGT
128 TTAAGAAAAATAAT
* * *
78553152 GTTTCTTTTTTAAAAAAAAAGGAGAAACTTTAGGTTTTAAAAAATAAAAATTTGTTTTTTTTGTC
1 ATTT-TTTTTT------AAA-GAGAAACTTTAGATTTTAAAAAATAAAAATCTGTTTTTTTTGTC
*
78553217 ATTTTAAAGAAAAGTTTTAATTTTTAAAATAATTTTTTTTTCAACTATTTCAAAGTAAAAGCTTT
58 ATTTTAAAGAAAAGTTTAAATTTTTAAAATAATTTTTTTTTCAACTATTTCAAAGTAAAAGCTTT
78553282 AATCTTTAAGAAAAATAAT
123 AATCTTTAAGAAAAATAAT
* * *
78553301 GTTTTTTTTTAAAAATGGAGAAAGTTTAGATTTTGAAAAATAAAAATCTGTTTTTTTTAGTCA-T
1 ATTTTTTTTT--AAA--GAGAAACTTTAGATTTTAAAAAATAAAAATCTGTTTTTTTT-GTCATT
* *
78553365 TTAGAGGAAAGTTTAAATTTTTAAAATAAAATTTTGATTTTTTTTCAACTATTTCGAAA-T-AAA
61 TTAAAGAAAAGTTTAAATTTTTAAAAT--AA---T--TTTTTTTTCAACTATTTC-AAAGTAAAA
* * * * *
78553428 GTTTTGATTTTTAAGAAGAGTAAT
118 GCTTTAATCTTTAAGAAAAATAAT
78553452 ATTTTTTTTTAAAGA-AAACTTT-GATTTT
1 ATTTTTTTTTAAAGAGAAACTTTAGATTTT
78553480 GCATTCAAAA
Statistics
Matches: 284, Mismatches: 25, Indels: 36
0.82 0.07 0.10
Matches are distributed among these distances:
143 3 0.01
144 10 0.04
145 69 0.24
146 10 0.04
147 4 0.01
148 27 0.10
149 38 0.13
150 70 0.25
151 31 0.11
152 19 0.07
153 3 0.01
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (141 bp):
ATTTTTTTTTAAAGAGAAACTTTAGATTTTAAAAAATAAAAATCTGTTTTTTTTGTCATTTTAAA
GAAAAGTTTAAATTTTTAAAATAATTTTTTTTTCAACTATTTCAAAGTAAAAGCTTTAATCTTTA
AGAAAAATAAT
Found at i:78554011 original size:16 final size:16
Alignment explanation
Indices: 78553975--78554005 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
78553965 ATTTGTCTTT
*
78553975 ATTTATTTTTATGTTC
1 ATTTATATTTATGTTC
78553991 ATTTATATTTATGTT
1 ATTTATATTTATGTT
78554006 TTTTTACACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.03, G:0.06, T:0.68
Consensus pattern (16 bp):
ATTTATATTTATGTTC
Found at i:78556407 original size:40 final size:40
Alignment explanation
Indices: 78556330--78556426 Score: 126
Period size: 40 Copynumber: 2.5 Consensus size: 40
78556320 ACCCAAGTAT
* * *
78556330 CTTCAGGATTTAG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
* *
78556369 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
78556409 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
78556427 GTATCATCCG
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 10 0.20
40 39 0.78
41 1 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:78561342 original size:30 final size:30
Alignment explanation
Indices: 78561306--78561366 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
78561296 TTTGAAAAAT
78561306 AGAAATT-AAAAGACTCAACTCAACTCTCGC
1 AGAAATTAAAAAG-CTCAACTCAACTCTCGC
*
78561336 AGAAATTAAAAAGCTCAACTCACCTCTCGC
1 AGAAATTAAAAAGCTCAACTCAACTCTCGC
78561366 A
1 A
78561367 ATATGAGTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.20
Consensus pattern (30 bp):
AGAAATTAAAAAGCTCAACTCAACTCTCGC
Found at i:78561605 original size:79 final size:77
Alignment explanation
Indices: 78561476--78561730 Score: 255
Period size: 79 Copynumber: 3.3 Consensus size: 77
78561466 AAACAGAATC
* ** * * * *
78561476 TGAAAAACA-AATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATCTCGCAATG
1 TGAAAAACAGAA-ATTGAAAATACCTCAG-CGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATA
78561539 TGAGTTGATTTTTT
64 TGAGTTGATTTTTT
* * * * * *
78561553 TGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAAT
1 TGAAAAACAGAAATTG--AAAATACCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAAT
78561617 ATGAGTTGATTTTTT
63 ATGAGTTGATTTTTT
* * *
78561632 TGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATATG
1 TGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
*
78561697 AGTCGATTTTTTTT
66 AGTTGA--TTTTTT
**
78561711 TGAAAGGCAGAAATTGAAAA
1 TGAAAAACAGAAATTGAAAA
78561731 ACGGAAATTG
Statistics
Matches: 150, Mismatches: 20, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
76 2 0.01
77 56 0.37
78 2 0.01
79 88 0.59
80 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (77 bp):
TGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTT
Found at i:78561683 original size:77 final size:78
Alignment explanation
Indices: 78561515--78561730 Score: 265
Period size: 79 Copynumber: 2.7 Consensus size: 78
78561505 ATGTGACCCG
* * * * *
78561515 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG--AAAATACCT
* * * *
78561580 CAGTGTGTGATCTGA
64 CAGCGCGTGAGCTCA
*
78561595 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
78561659 GCGCGTGAGC-CA
66 GCGCGTGAGCTCA
* * *
78561671 AGGCTCAACTCACCTCTCGTAATATGAGTCGATTTTTTTTTGAAAGGCAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGACAGAAATTGAAAA
78561731 ACGGAAATTG
Statistics
Matches: 120, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
76 2 0.02
77 45 0.38
79 72 0.60
80 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (78 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
GCGCGTGAGCTCA
Found at i:78561790 original size:93 final size:91
Alignment explanation
Indices: 78561631--78561990 Score: 326
Period size: 93 Copynumber: 4.1 Consensus size: 91
78561621 GTTGATTTTT
* * * * * *
78561631 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGTAATA
1 TTGAAAAACGGAAATTGAAAATACCTC-GC-TGTGA-CCTGAGGCTCAACTCACCTCTCGCAATA
78561695 TGAGTCGATTTTTTTTTGAAAGGCAGAAA
63 TGAGTCGATTTTTTTTTGAAAGGCAGAAA
*
78561724 TTGAAAAACGGAAATTGAAAATACCTCGACATGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACGGAAATTGAAAATACCTCG-C-TGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* *
78561789 GAGTTGA--TTTTTTTGAAAGACAGAAA
64 GAGTCGATTTTTTTTTGAAAGGCAGAAA
** ** * * *
78561815 TTG----A---AAA-T--AGCT-CAGCGC-GTGAGCC-AAGGCTTAACTCACCTCTCACAATATG
1 TTGAAAAACGGAAATTGAAAATACCTCGCTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATG
78561867 AGTCGATTTTTTTTTGAAAGGCAGAAA
65 AGTCGATTTTTTTTTGAAAGGCAGAAA
* * *
78561894 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATAC
1 TTGAAAAACGGAAATTGAAAATACCTC-GC-TGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
*
78561959 GAGTTGATTTTTTTTT-ACAA--CAGAAA
64 GAGTCGATTTTTTTTTGA-AAGGCAGAAA
78561985 TTGAAA
1 TTGAAA
78561991 TTACCTCAGC
Statistics
Matches: 215, Mismatches: 31, Indels: 44
0.74 0.11 0.15
Matches are distributed among these distances:
77 33 0.15
78 1 0.00
79 22 0.10
80 3 0.01
81 2 0.01
83 2 0.01
84 3 0.01
86 3 0.01
87 2 0.01
89 2 0.01
90 2 0.01
91 35 0.16
92 5 0.02
93 100 0.47
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (91 bp):
TTGAAAAACGGAAATTGAAAATACCTCGCTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
GTCGATTTTTTTTTGAAAGGCAGAAA
Found at i:78562050 original size:77 final size:76
Alignment explanation
Indices: 78561904--78562049 Score: 222
Period size: 75 Copynumber: 1.9 Consensus size: 76
78561894 TTGAAAAACG
* * *
78561904 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTT
78561969 TTTTTTACAACA
65 TTTTTTACAACA
* * *
78561981 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTTT
78562045 TTTTT
66 TTTTT
78562050 TGAAAGGCAG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
75 41 0.65
77 22 0.35
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (76 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCACAATACGAGTTGATTTT
TTTTTACAACA
Found at i:78562198 original size:74 final size:71
Alignment explanation
Indices: 78562074--78562351 Score: 288
Period size: 76 Copynumber: 3.9 Consensus size: 71
78562064 TTGAAAAACG
* *
78562074 AAAATTGAAAATACCTCTA-CGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATT
1 AAAATTG-AAATACCTC-AGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
78562138 TTTTTGACAAC
62 TTTTT-ACAAC
78562149 AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 A-AAATTGAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
78562214 TTT-----
64 TTTACAAC
* * * *
78562217 ----TTTAAATACCTCAGGGCGTTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-
**
78562278 AAACATAC
65 TTACA-AC
* *
78562286 GAAAAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
1 --AAAATTGA-AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
78562351 T
63 T
78562352 GAAAAACAAA
Statistics
Matches: 172, Mismatches: 14, Indels: 33
0.79 0.06 0.15
Matches are distributed among these distances:
62 51 0.30
63 5 0.03
74 41 0.24
75 8 0.05
76 67 0.39
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (71 bp):
AAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TACAAC
Found at i:78562218 original size:76 final size:75
Alignment explanation
Indices: 78562075--78562216 Score: 225
Period size: 74 Copynumber: 1.9 Consensus size: 75
78562065 TGAAAAACGA
*
78562075 AAATTGAAAATACCTCTACGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCTACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
78562140 TTTGACAACAG
65 TTTGACAACAG
* *
78562151 AAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCTA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
78562214 TTT
65 TTT
78562217 TTTAAATACC
Statistics
Matches: 62, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
74 41 0.66
75 1 0.02
76 20 0.32
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (75 bp):
AAATTGAAAATACCTCTACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
TTGACAACAG
Found at i:78562219 original size:170 final size:169
Alignment explanation
Indices: 78561571--78562218 Score: 905
Period size: 170 Copynumber: 3.8 Consensus size: 169
78561561 ATAAATTGAA
* * * *
78561571 AAAATACCTC-AGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
1 AAAATACCTCGA-CGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGA
* **
78561635 AAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATATGAGT
65 AAGACAGAAATTGAAAATACCTCA-CGCGTGAGCCAAGGCTCAACTCACCTCTCACAATATGAGT
78561700 CGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
129 CGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
* * *
78561741 AAAATACCTCGACATGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
* *
78561806 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTTAACTCACCTCTCACAATATGAGTC
66 AGACAGAAATTGAAAATACCTCA-CGCGTGAGCCAAGGCTCAACTCACCTCTCACAATATGAGTC
78561871 GATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
130 GATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
* * * *
78561911 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTTTA
1 AAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TTTTTTTGA
* * * *
78561976 CA-ACAGAAATTGAAATTACCTCA-GCGTG-TCCTGAGGCTCAACTCACCTCTCACAATATGAGT
65 AAGACAGAAATTGAAAATACCTCACGCGTGAGCC-AAGGCTCAACTCACCTCTCACAATATGAGT
* *
78562038 TGATTTTTTTTTTGAAAGGCAGAAATTTGAAAAACGAAAATTG
129 CGA-TTTTTTTTTGAAAGGCAGAAA-TTGAAAAACGGAAATTG
* * *
78562081 AAAATACCTCTACGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
* * * * *
78562146 A-ACAGAAATTGAAATTACCTCA-GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
66 AGACAGAAATTGAAAATACCTCACGCGTGAGCC-AAGGCTCAACTCACCTCTCACAATATGAGTC
78562208 GATTTTTTTTT
130 GATTTTTTTTT
78562219 TAAATACCTC
Statistics
Matches: 447, Mismatches: 26, Indels: 12
0.92 0.05 0.02
Matches are distributed among these distances:
167 2 0.00
168 44 0.10
169 93 0.21
170 298 0.67
171 10 0.02
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.29
Consensus pattern (169 bp):
AAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAA
AGACAGAAATTGAAAATACCTCACGCGTGAGCCAAGGCTCAACTCACCTCTCACAATATGAGTCG
ATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
Found at i:78562330 original size:138 final size:136
Alignment explanation
Indices: 78562101--78562351 Score: 396
Period size: 138 Copynumber: 1.8 Consensus size: 136
78562091 TACGTGTGAC
* *** *
78562101 CTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAAACAACAAAAATTGAAATTACCT
* *
78562166 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTAAATACCTCAG
66 CAGCGTGTCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTTTTAAATACCTCAG
78562231 GGCGTT
131 GGCGTT
*
78562237 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATACGAAAAATTGACAA-TA
1 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAAACA-AC-AAAAATTGA-AATTA
78562301 CCTCAGCGTGTCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
63 CCTCAGCGTGTCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
78562352 GAAAAACAAA
Statistics
Matches: 104, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
136 41 0.39
137 2 0.02
138 59 0.57
139 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (136 bp):
CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGAAACAACAAAAATTGAAATTACCT
CAGCGTGTCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTTTTAAATACCTCAG
GGCGTT
Found at i:78562566 original size:72 final size:72
Alignment explanation
Indices: 78562449--78562673 Score: 292
Period size: 72 Copynumber: 3.0 Consensus size: 72
78562439 ACTCACTTTG
78562449 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
78562514 TTTTGAA
66 TTTTGAA
78562521 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
78562586 TTTTTTTTTGAA
66 -----TTTTGAA
* * * * ** *
78562598 AGACAGAAATTGAAAATACCTCAGCCTGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAGC
1 A-ACAGAAATTGAAATTACCTCA-AC-GTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
78562662 TG-ATTTTGAA
62 TGAATTTTGAA
78562672 AA
1 AA
78562674 AGTAGAAATT
Statistics
Matches: 137, Mismatches: 7, Indels: 17
0.85 0.04 0.11
Matches are distributed among these distances:
72 65 0.47
73 1 0.01
74 8 0.06
77 8 0.06
78 20 0.15
79 2 0.01
80 32 0.23
81 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (72 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
TTTTGAA
Found at i:78562737 original size:54 final size:55
Alignment explanation
Indices: 78562637--78562742 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
78562627 GAACCGAGGC
* * *
78562637 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAACTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * *
78562691 TCAACCCACCTCTCGCAATATGAATTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAACTGATT-TTGAAAAAGCAGAAATTGAAAA
78562743 CAGAAATTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 33 0.75
55 11 0.25
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAACTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:78562749 original size:13 final size:13
Alignment explanation
Indices: 78562722--78562755 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
78562712 GAATTGATTC
*
78562722 TTGAACAACATAAA
1 TTGAA-AACAGAAA
78562736 TTGAAAACAGAAA
1 TTGAAAACAGAAA
78562749 TTGAAAA
1 TTGAAAA
78562756 TACCTCAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:78562803 original size:140 final size:140
Alignment explanation
Indices: 78562593--78562944 Score: 598
Period size: 140 Copynumber: 2.5 Consensus size: 140
78562583 GAATTTTTTT
78562593 TTGAAAGACAGAAATTGAAAATACCTCAGCCTGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAG-C-GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
*
78562657 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAATTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTAGCAATATGAATTGATTC
78562722 TTGAACAACATAAA
127 TTGAACAACATAAA
*
78562736 TTGAAAACAGAAATTGAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* **
78562801 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTAGCAATATGGGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTAGCAATATGAATTGATTCTTGA
*
78562866 ACAACGTAAA
131 ACAACATAAA
*
78562876 TTGAAAGCAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
78562941 CTGA
66 CTGA
78562945 AATTAAAACA
Statistics
Matches: 200, Mismatches: 8, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
139 3 0.01
140 168 0.84
141 1 0.00
142 22 0.11
143 6 0.03
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.24
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTAGCAATATGAATTGATTCTTGA
ACAACATAAA
Found at i:78563007 original size:72 final size:72
Alignment explanation
Indices: 78562873--78563038 Score: 230
Period size: 72 Copynumber: 2.3 Consensus size: 72
78562863 TGAACAACGT
* * * *
78562873 AAATTG-AAAGCAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
1 AAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
78562937 TGAGCTG
66 TGAGCTG
*
78562944 AAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
1 AAATTGAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAAT
*
78563008 ATGAGTTG
65 ATGAGCTG
**
78563016 ATTTTGAAAAACAAAAATT-AAAA
1 AAATTGAAAAACAAAAATTGAAAA
78563039 GGCTTAACTC
Statistics
Matches: 84, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
71 12 0.14
72 68 0.81
73 4 0.05
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.22
Consensus pattern (72 bp):
AAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
TGAGCTG
Found at i:78563133 original size:122 final size:124
Alignment explanation
Indices: 78562913--78563159 Score: 383
Period size: 122 Copynumber: 2.0 Consensus size: 124
78562903 GCGTGACCTG
* *
78562913 AGGCTCAACTCACCTCTCGCAATATGAGCTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
78562978 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAATTAAA
* * * * *
78563038 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATATCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* *
78563100 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
78563159 A
1 A
78563160 ATACCTCAAC
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
121 16 0.14
122 62 0.55
123 7 0.06
124 1 0.01
125 27 0.24
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.24
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATGAGCTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:78563184 original size:71 final size:70
Alignment explanation
Indices: 78563038--78563212 Score: 219
Period size: 71 Copynumber: 2.5 Consensus size: 70
78563028 AAAAATTAAA
* * * * * * *
78563038 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATATCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
78563102 CCCCG
66 CCCCG
*
78563107 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
* **
78563172 GTCTTG
65 GCCCCG
78563178 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTT
78563213 CCCTTGAAAA
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.07
71 60 0.65
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:78575070 original size:20 final size:20
Alignment explanation
Indices: 78575035--78575080 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
78575025 TAATTTGTCA
78575035 AAAAATAGTTT-AAAAATTAT
1 AAAAATAGTTTAAAAAATT-T
78575055 AAAAATA-TTTAAAAAAATTT
1 AAAAATAGTTT-AAAAAATTT
78575075 AAAAAT
1 AAAAAT
78575081 TTCAATACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.12
20 14 0.58
21 7 0.29
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAAATAGTTTAAAAAATTT
Found at i:78576425 original size:6 final size:6
Alignment explanation
Indices: 78576414--78576438 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
78576404 CATTTATGTT
78576414 TTCATC TTCATC TTCATC TTCATC T
1 TTCATC TTCATC TTCATC TTCATC T
78576439 GTTGAATTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (6 bp):
TTCATC
Found at i:78578313 original size:19 final size:19
Alignment explanation
Indices: 78578287--78578396 Score: 181
Period size: 19 Copynumber: 5.9 Consensus size: 19
78578277 AATCATATCT
78578287 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
78578306 TGTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
78578324 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
78578341 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
78578360 TCTAAGATTGCATAGCATA
1 TCTAAGATTGCATATCATA
78578379 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
78578397 TGAAGATTAT
Statistics
Matches: 84, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
17 16 0.19
18 15 0.18
19 53 0.63
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Done.