Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 232 of 373
Found at i:78829070 original size:81 final size:81
Alignment explanation
Indices: 78828955--78829151 Score: 306
Period size: 81 Copynumber: 2.4 Consensus size: 81
78828945 TACTGAAATG
* *
78828955 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
**
78829020 CAAAATTACTGTTTTA
66 CAAAATTACCATTTTA
*
78829036 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
78829101 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * **
78829117 CCCTCAGTTTACA-AATTACTGTTTTACCCTCGATT
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATT
78829152 GTGAAATTAC
Statistics
Matches: 107, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 20 0.19
81 87 0.81
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:78829330 original size:27 final size:27
Alignment explanation
Indices: 78829183--78829323 Score: 167
Period size: 27 Copynumber: 5.2 Consensus size: 27
78829173 TGTAGGATAG
78829183 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
78829210 AATTACCAAAATACCCCTAGTTTGTAG
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
78829237 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
78829264 AATTATCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
* **
78829291 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAGTTTGTAA
78829318 AATTAC
1 AATTAC
78829324 AGAAATATCT
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 3 0.03
27 90 0.93
28 4 0.04
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:78830258 original size:31 final size:31
Alignment explanation
Indices: 78830220--78830336 Score: 182
Period size: 31 Copynumber: 3.8 Consensus size: 31
78830210 ACTGTTTACA
*
78830220 GTAAAGGCTTCGACCCAGTGATATGATTTAT
1 GTAAAGGCTTCGGCCCAGTGATATGATTTAT
78830251 GTAAAGGCTTCGGCCCAGTGATATGATTTAT
1 GTAAAGGCTTCGGCCCAGTGATATGATTTAT
* *
78830282 GAAAAGGCTTCGGCCTAGTGATATGATTTAT
1 GTAAAGGCTTCGGCCCAGTGATATGATTTAT
* *
78830313 GGAAAGGCTTCGGCCTAGT-ATATG
1 GTAAAGGCTTCGGCCCAGTGATATG
78830337 TCAAGACTAA
Statistics
Matches: 82, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 5 0.06
31 77 0.94
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (31 bp):
GTAAAGGCTTCGGCCCAGTGATATGATTTAT
Found at i:78846323 original size:46 final size:46
Alignment explanation
Indices: 78846273--78846448 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
78846263 TGGTTGAGCA
78846273 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
78846319 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
78846364 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
78846412 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78846449 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:78846429 original size:93 final size:93
Alignment explanation
Indices: 78846270--78846441 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
78846260 GGATGGTTGA
* *
78846270 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
78846335 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
78846363 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
78846428 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
78846442 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:78848446 original size:79 final size:79
Alignment explanation
Indices: 78848335--78848557 Score: 260
Period size: 79 Copynumber: 2.8 Consensus size: 79
78848325 GCTCCTCGTT
* * *
78848335 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCG
*
78848399 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
78848415 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
78848478 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* * * * *
78848493 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTTGGGACTTAGCCC
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCC
78848555 GGA
63 GGA
78848558 CATCATTCAA
Statistics
Matches: 126, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 45 0.36
79 57 0.45
80 23 0.18
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:78848452 original size:39 final size:40
Alignment explanation
Indices: 78848335--78848557 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
78848325 GCTCCTCGTT
* *
78848335 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
78848375 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
78848415 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
78848454 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
78848493 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
*
78848534 C-AA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
78848558 CATCATTCAA
Statistics
Matches: 165, Mismatches: 10, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:78868920 original size:40 final size:41
Alignment explanation
Indices: 78868865--78868981 Score: 175
Period size: 40 Copynumber: 2.9 Consensus size: 41
78868855 GGATATAACT
* *
78868865 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
* *
78868905 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
*
78868945 ACTCGCACAAATGCCTTCGGGACTTGGCCCGGATTAG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAG
78868982 TCACTAGTGC
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
40 66 0.97
41 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (41 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTA
Found at i:78868998 original size:39 final size:40
Alignment explanation
Indices: 78868872--78869013 Score: 162
Period size: 40 Copynumber: 3.6 Consensus size: 40
78868862 ACTACTCGCT
* * *
78868872 CAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTAGCA
* *
78868912 CAATTGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
* * **
78868952 CAAATGCCTTCGGGACTTGGCCCGGA-TTAGTCACTAGTG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
* *
78868991 CAGATGCCTTCAGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
78869014 AGTTTTCATC
Statistics
Matches: 89, Mismatches: 12, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
39 29 0.33
40 58 0.65
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
Found at i:78876226 original size:40 final size:40
Alignment explanation
Indices: 78876080--78876265 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
78876070 GCTACTCGTT
* *
78876080 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
78876120 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
78876160 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*** * * * *
78876200 CAAATGCCTTC-GGATCTTAGTTCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
78876241 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
78876266 CATCATTCAA
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 113 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:78884210 original size:40 final size:40
Alignment explanation
Indices: 78884012--78884213 Score: 239
Period size: 40 Copynumber: 5.0 Consensus size: 40
78884002 CGGAATTTAA
** *
78884012 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78884052 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
78884092 CCAGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78884132 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
78884172 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
78884212 CC
1 CC
78884214 AGACATCATT
Statistics
Matches: 142, Mismatches: 16, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
39 4 0.03
40 127 0.89
41 11 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:78895761 original size:43 final size:42
Alignment explanation
Indices: 78895705--78895822 Score: 112
Period size: 43 Copynumber: 2.8 Consensus size: 42
78895695 AGCTCGTACA
** *
78895705 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAATAT-G
* * ** *
78895748 ATGCCACTGTCCCAGATAG-GGTCTTACACAAAATGAAATATG
1 ATGCCAATGTCCCAGA-CGTGGTCTTACACGTAATCAAATATG
* * *
78895790 ATGCCAATGTCTCAAACTTGGTCTTACACGTAA
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAA
78895823 ATCATAAGTC
Statistics
Matches: 58, Mismatches: 15, Indels: 5
0.74 0.19 0.06
Matches are distributed among these distances:
42 26 0.45
43 31 0.53
44 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAATATG
Found at i:78900764 original size:37 final size:37
Alignment explanation
Indices: 78900714--78900792 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
78900704 TTATTACGAA
* *
78900714 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
78900751 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
78900788 GTCTT
1 GTCTT
78900793 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:78900998 original size:47 final size:47
Alignment explanation
Indices: 78900911--78901308 Score: 643
Period size: 47 Copynumber: 8.5 Consensus size: 47
78900901 CCCTTCGGGA
* * * * * * * *
78900911 CTTATCAAATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78900958 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78901005 CTTATCACATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78901052 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78901099 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78901146 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78901193 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78901240 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78901287 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
78901309 TTGGCTGAAT
Statistics
Matches: 331, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 331 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78901013 original size:22 final size:22
Alignment explanation
Indices: 78900986--78901061 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
78900976 TTTCACATTC
78900986 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
**** ** *
78901008 ATCACATATATACACTTTCGCATT
1 ATCACAT-CGGCCA-TTAGGCCTT
78901032 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
78901055 ATCACAT
1 ATCACAT
78901062 ATATACACTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.28, C:0.30, G:0.12, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:78903500 original size:85 final size:85
Alignment explanation
Indices: 78903371--78903549 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
78903361 TATTTTATTG
*
78903371 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
78903436 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
78903456 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
78903521 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
78903541 CCCATGCTC
1 CCCATGCTC
78903550 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:78905075 original size:40 final size:40
Alignment explanation
Indices: 78905020--78905171 Score: 279
Period size: 40 Copynumber: 3.8 Consensus size: 40
78905010 CTTCGAGGTT
78905020 TAGCACGAATGCTCTTCG-GAACTTAGCCCGGATACATCAC
1 TAGCACGAATGCTCTTCGAG-ACTTAGCCCGGATACATCAC
78905060 TAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCAC
1 TAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCAC
78905100 TAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCAC
1 TAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCAC
*
78905140 TAGCACGAATGCTCTTCGGGACTTAGCCCGGA
1 TAGCACGAATGCTCTTCGAGACTTAGCCCGGA
78905172 CATCATTCAA
Statistics
Matches: 110, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
40 109 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (40 bp):
TAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCAC
Found at i:78905086 original size:63 final size:63
Alignment explanation
Indices: 78904968--78905086 Score: 159
Period size: 63 Copynumber: 1.9 Consensus size: 63
78904958 AGCATGATTA
* * * **
78904968 CTCTTCGGGACCTAGCCCGGATATAACATCAGCACGGATGCTCTTCGAGGTTTAGCACGAATG
1 CTCTTCGGAACCTAGCCCGGATACAACATCAGCACGAATGCTCTTCGAGACTTAGCACGAATG
* *
78905031 CTCTTCGGAACTTAGCCCGGATACATCA-CTAGCACGAATGCTCTTCGAGACTTAGC
1 CTCTTCGGAACCTAGCCCGGATACAACATC-AGCACGAATGCTCTTCGAGACTTAGC
78905087 CCGGATACAT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
62 1 0.02
63 47 0.98
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (63 bp):
CTCTTCGGAACCTAGCCCGGATACAACATCAGCACGAATGCTCTTCGAGACTTAGCACGAATG
Found at i:78905518 original size:29 final size:29
Alignment explanation
Indices: 78905479--78905557 Score: 115
Period size: 29 Copynumber: 2.7 Consensus size: 29
78905469 CTTAATAATC
78905479 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGTA-TTTCA
*
78905509 AACTCGCACACTTAGTGCCATGTATTTCA
1 AACCCGCACACTTAGTGCCATGTATTTCA
*
78905538 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
78905558 ATCTCACAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGTATTTCA
Found at i:78905600 original size:43 final size:43
Alignment explanation
Indices: 78905539--78905641 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
78905529 TGTATTTCAA
78905539 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
78905582 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
78905625 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
78905642 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:78907568 original size:37 final size:37
Alignment explanation
Indices: 78907508--78907585 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
78907498 TATTACGAAT
* * *
78907508 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCTCCACACGAAGTCATCAGG
*
78907545 TCTTACCCGGACAAAAT-TCCCACACGTAGTCATCAGG
1 TCTTACCCGGACAAAATCT-CCACACGAAGTCATCAGG
78907582 TCTT
1 TCTT
78907586 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
36 1 0.03
37 35 0.97
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.26
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCTCCACACGAAGTCATCAGG
Found at i:78907782 original size:47 final size:47
Alignment explanation
Indices: 78907704--78907960 Score: 397
Period size: 47 Copynumber: 5.5 Consensus size: 47
78907694 CCCTTCGGGA
* ** * * * * *
78907704 CTTATCACATTTATGTACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78907751 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78907798 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78907845 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78907892 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78907939 CTTATAACATATATACACTTTC
1 CTTATCACATATATACACTTTC
78907961 TTGGCTGAAT
Statistics
Matches: 195, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 195 1.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78910121 original size:85 final size:85
Alignment explanation
Indices: 78910021--78910199 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
78910011 TATTTTATTG
*
78910021 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
*
78910086 TAGCCATAACATCTTGTCCA
66 TAGCAATAACATCTTGTCCA
78910106 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
78910171 TAGCAATAACATCTTGTCCA
66 TAGCAATAACATCTTGTCCA
78910191 CCCATGCTC
1 CCCATGCTC
78910200 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCAATAACATCTTGTCCA
Found at i:78913077 original size:27 final size:27
Alignment explanation
Indices: 78913059--78913120 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
78913049 TATGTTGGTC
* *
78913059 ATTTTACACTATAGGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCGATA
78913086 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCGATA
78913113 ATTTTACA
1 ATTTTACA
78913121 AATCGGGGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGATA
Found at i:78913365 original size:80 final size:81
Alignment explanation
Indices: 78913100--78913517 Score: 449
Period size: 81 Copynumber: 5.2 Consensus size: 81
78913090 TACACTACAA
* * * * *
78913100 GGGTATTTCGATAATTTTACAAATCGGGGGTGTTTCAGTAATTTTACAAATCGATGGTATTTCAG
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGG
*
78913165 TAATTTTACAAATTGA
66 TAATTTTACAAATTGG
* * * * * * *
78913181 AGGAATTTCGGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTACAAATCGATGGTGTTTCGA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGG
*
78913246 TAATTTTACAAATTGA
66 TAATTTTACAAATTGG
* * * * *
78913262 GGGTGTTCCGATAATTTCACAAATCGAGGGTATTTCAGTAATTTCAC-AATCGAGGGTATGTT-G
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTAT-TTCG
*
78913325 GTAATTTTATAAATTGG
65 GTAATTTTACAAATTGG
* * * *
78913342 GGGTATTTCGGTAATTTTGCAAATCGAGGGTATTTCAGTAATTTCACAACT-GAGGCTATTTCGG
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGG
78913406 TAATTTTACAAATT-G
66 TAATTTTACAAATTGG
* * *
78913421 AGG-ATGTTCGGGTAATTTCAC-AATCGAGGGTA-TTC-GATAATTTTACAAATTTG-GGGTATT
1 GGGTAT-TTC-GGTAATTTTACAAATCGAGGGTATTTCAG-TAATTTTACAAA-TCGAGGGTATT
* * *
78913481 TTGGTAATTTCACAAATCGG
62 TCGGTAATTTTACAAATTGG
*
78913501 GGGTATTTCAGTAATTT
1 GGGTATTTCGGTAATTT
78913518 CTCTTTATTA
Statistics
Matches: 284, Mismatches: 43, Indels: 22
0.81 0.12 0.06
Matches are distributed among these distances:
77 1 0.00
78 15 0.05
79 48 0.17
80 105 0.37
81 115 0.40
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (81 bp):
GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGG
TAATTTTACAAATTGG
Found at i:78913518 original size:27 final size:27
Alignment explanation
Indices: 78913073--78913517 Score: 378
Period size: 27 Copynumber: 16.6 Consensus size: 27
78913063 TACACTATAG
* *
78913073 GGGTATTTC-GATAATTTTAC-ACTACAA
1 GGGTATTTCAG-TAATTTTACAAAT-CGA
*
78913100 GGGTATTTC-GATAATTTTACAAATCGG
1 GGGTATTTCAG-TAATTTTACAAATCGA
*
78913127 GGGTGTTTCAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
78913154 TGGTATTTCAGTAATTTTACAAATTGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * * *
78913181 AGGAATTTCGGTAATTTTACAAATCAA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
78913208 GGGTATTTTAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * *
78913235 TGGTGTTTC-GATAATTTTACAAATTGA
1 GGGTATTTCAG-TAATTTTACAAATCGA
* * *
78913262 GGGT-GTTCCGATAATTTCACAAATCGA
1 GGGTATTTCAG-TAATTTTACAAATCGA
*
78913289 GGGTATTTCAGTAATTTCAC-AATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * * *
78913315 GGGTATGTT-GGTAATTTTATAAATTGG
1 GGGTAT-TTCAGTAATTTTACAAATCGA
* *
78913342 GGGTATTTCGGTAATTTTGCAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
78913369 GGGTATTTCAGTAATTTCACAACT-GA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * *
78913395 GGCTATTTCGGTAATTTTACAAATTGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
78913422 -GG-ATGTTCGGGTAATTTCAC-AATCGA
1 GGGTAT-TTC-AGTAATTTTACAAATCGA
*
78913448 GGGTA-TTC-GATAATTTTACAAATTTG-
1 GGGTATTTCAG-TAATTTTACAAA-TCGA
** * *
78913474 GGGTATTTTGGTAATTTCACAAATCGG
1 GGGTATTTCAGTAATTTTACAAATCGA
78913501 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
78913518 CTCTTTATTA
Statistics
Matches: 344, Mismatches: 55, Indels: 38
0.79 0.13 0.09
Matches are distributed among these distances:
24 1 0.00
25 10 0.03
26 69 0.20
27 255 0.74
28 9 0.03
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:78913907 original size:28 final size:28
Alignment explanation
Indices: 78913847--78913907 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
78913837 CCCAATCTTG
*
78913847 TTCACATGGCCCATCAGACCCAATCACA
1 TTCATATGGCCCATCAGACCCAATCACA
*
78913875 TTCATATGGCCCATCAGGCCCAATCACA
1 TTCATATGGCCCATCAGACCCAATCACA
78913903 TTCAT
1 TTCAT
78913908 CTCGACTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.30, C:0.36, G:0.11, T:0.23
Consensus pattern (28 bp):
TTCATATGGCCCATCAGACCCAATCACA
Found at i:78918198 original size:39 final size:39
Alignment explanation
Indices: 78918144--78918380 Score: 384
Period size: 39 Copynumber: 6.1 Consensus size: 39
78918134 ATTATATTAT
* ** *
78918144 CAGCACAAAGCCTGCGGGACTTTAACTCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
78918183 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
* *
78918222 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTT
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
*
78918261 CAGCACAAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
* *
78918300 CAGCACGAAGCTTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
*
78918339 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
78918378 CAG
1 CAG
78918381 TGTCTTGCAT
Statistics
Matches: 183, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 183 1.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
Found at i:78920378 original size:13 final size:13
Alignment explanation
Indices: 78920355--78920388 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
78920345 AAACATATTA
78920355 TAAACATTTTGTGT
1 TAAA-ATTTTGTGT
78920369 TAAAATTTTGTGT
1 TAAAATTTTGTGT
78920382 TAGAAAT
1 TA-AAAT
78920389 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (13 bp):
TAAAATTTTGTGT
Found at i:78921895 original size:40 final size:40
Alignment explanation
Indices: 78921691--78921881 Score: 337
Period size: 40 Copynumber: 4.8 Consensus size: 40
78921681 GGACTAATAT
* *
78921691 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
78921731 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
78921771 CCGAAGGCATTTGTGCGAGTTACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
78921811 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCCAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
78921851 CCGAAGGCATTTGTGCGAGTAACTATATCCG
1 CCGAAGGCATTTGTGCGAGTTACTATATCCG
78921882 TGTAACACCC
Statistics
Matches: 145, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:78923281 original size:40 final size:40
Alignment explanation
Indices: 78923244--78923375 Score: 169
Period size: 40 Copynumber: 3.3 Consensus size: 40
78923234 GCTACTCGTT
* *
78923244 CAAATGCCTTCGGGACATAGCCTGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* *
78923284 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
78923324 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
78923363 CAAATGCCTTCGG
1 CAAATGCCTTCGG
78923376 ATCTTAGTCC
Statistics
Matches: 83, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.42
40 46 0.55
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:78923361 original size:79 final size:82
Alignment explanation
Indices: 78923244--78923428 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 82
78923234 GCTACTCGTT
* * * *
78923244 CAAATGCCTTCGGGACATAGCCTGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* * *
78923307 GGATTTAGTAAC-TCGCA
65 GAATATAGTAACTTAGCA
* **
78923324 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
78923387 AATATGGTCACTTAGCA
66 AATATAGTAACTTAGCA
78923404 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
78923429 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 52 0.58
80 34 0.38
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
AATATAGTAACTTAGCA
Found at i:78931207 original size:40 final size:40
Alignment explanation
Indices: 78931170--78931298 Score: 133
Period size: 40 Copynumber: 3.3 Consensus size: 40
78931160 GCTACTCGTT
*
78931170 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* * *
78931210 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCG
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * *
78931250 CAAATGCCTTCAGG-C---GCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
78931286 CAAATGCCTTCGG
1 CAAATGCCTTCGG
78931299 ATCTTAGTCC
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
36 28 0.37
39 1 0.01
40 45 0.59
41 2 0.03
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:78933748 original size:94 final size:94
Alignment explanation
Indices: 78933650--78933862 Score: 243
Period size: 94 Copynumber: 2.3 Consensus size: 94
78933640 AAGCTGACGC
* ** * * * *
78933650 CATGTCCTAGACAAGTCTTACACTAGCTTGTATGTCTCGAGGTCGATGCTTGTCCCAGACATGTC
1 CATGTCCTAGACATGTCTTACACTAGCTTAAATATCTCGAGGCCAATGCATGTCCCAGACATGTC
*
78933715 TTACACTAGCTCTCAT-CTCAATGTC-GATG
66 TTACACTAGCTCTCATGCT--ATGGCTGATG
* * * *
78933744 CATGTCCATA-ACATGTCTCACACTGGCTTAAATATCTCGAGGCCAATGCATGTCCTAGTCATGT
1 CATGTCC-TAGACATGTCTTACACTAGCTTAAATATCTCGAGGCCAATGCATGTCCCAGACATGT
*
78933808 CTTACACTGGCTCTCATGCTATGGCTGATG
65 CTTACACTAGCTCTCATGCTATGGCTGATG
* *
78933838 CATGTCCCAGATATGTCTTACACTA
1 CATGTCCTAGACATGTCTTACACTA
78933863 CCACACATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
93 5 0.05
94 89 0.91
95 4 0.04
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.31
Consensus pattern (94 bp):
CATGTCCTAGACATGTCTTACACTAGCTTAAATATCTCGAGGCCAATGCATGTCCCAGACATGTC
TTACACTAGCTCTCATGCTATGGCTGATG
Found at i:78937303 original size:46 final size:45
Alignment explanation
Indices: 78937108--78937325 Score: 203
Period size: 46 Copynumber: 4.7 Consensus size: 45
78937098 GGATATTCAT
* * * *
78937108 GCCAGTGTAAGACATGGCTGGGACATGCATCGGCCAC-ATTATGAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATG-TA
** *
78937154 GCCAGTGTAAGACCATGTCTACGACATGGCATCGGC-ATTGAGATG-A
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGATGTA
* *
78937200 GTGCTAGTGT-AGACATGTCTGGGACATGCATCAGCT-CGAGATGTAA
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGT-A
78937246 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATG-TA
* *
78937292 GTCAGTGTAAGACCAAGTCTGGGACATGGCATCG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
78937326 ACACCTTACC
Statistics
Matches: 144, Mismatches: 14, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
44 13 0.09
45 32 0.22
46 45 0.31
47 29 0.20
48 24 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTA
Found at i:78944721 original size:40 final size:40
Alignment explanation
Indices: 78944637--78944861 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
78944627 TTGAATGATG
* * * * *
78944637 TCCGGGCTAAGTCCCGAAGGC-TTTGTACTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
78944677 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
78944717 TCCGGGCTAAG-CTCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78944756 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78944796 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
78944837 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78944862 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 32 0.20
40 119 0.75
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:78944879 original size:80 final size:80
Alignment explanation
Indices: 78944711--78944894 Score: 205
Period size: 80 Copynumber: 2.3 Consensus size: 80
78944701 TGTGTGAGAT
* * * * *
78944711 ACTAATTCCGGGCTAAG-CTCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCAAAG
** *
78944775 GCATTTGTGCGAGTT
66 GCATTTGAACGAGTG
* *
78944790 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCAAA
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCAAA
78944854 GGCATTTGAACGAG-G
65 GGCATTTGAACGAGTG
* * *
78944869 AGCTATATCC-GGTTAAATTCCGAAGG
1 A-CTAAATCCGGGTTAAGTCCCGAAGG
78944895 TACGTGATTT
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
79 30 0.34
80 57 0.64
81 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
ACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCAAAG
GCATTTGAACGAGTG
Found at i:78952648 original size:40 final size:40
Alignment explanation
Indices: 78952564--78952788 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
78952554 TTGAATGATG
* * * *
78952564 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
78952604 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78952644 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78952683 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78952723 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
78952764 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78952789 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:78952810 original size:119 final size:119
Alignment explanation
Indices: 78952564--78952821 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
78952554 TTGAATGATG
* *
78952564 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
78952629 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
78952683 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
78952746 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
78952803 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
78952822 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:78955935 original size:46 final size:46
Alignment explanation
Indices: 78955825--78955993 Score: 200
Period size: 46 Copynumber: 3.6 Consensus size: 46
78955815 CGGCCACATT
* * *
78955825 ATGAAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACAT-GCGTC-GCCTTGAG
* * *
78955873 ACGAGTGCTAGTGTAAGA-CATGTCTGGGACATGCGTCGACCTTGAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGCGTCG-CCTTGAG
*
78955919 ATGTA-AGCCAGTGTAAGA-CATGTCTGGGACATGCGTCGGCTATGAG
1 ATG-AGAGCCAGTGTAAGACCATGTCTGGGACATGCGTCGCCT-TGAG
*
78955965 ATGATAGCCAGTGTAAGACCATGTCTGGG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGG
78955994 GCATTGGATC
Statistics
Matches: 106, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
45 4 0.04
46 63 0.59
47 25 0.24
48 14 0.13
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.23
Consensus pattern (46 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGCGTCGCCTTGAG
Found at i:78962845 original size:23 final size:23
Alignment explanation
Indices: 78962814--78962870 Score: 96
Period size: 23 Copynumber: 2.5 Consensus size: 23
78962804 CAATAAAAAA
*
78962814 AGAAAAAAAAACCATTCTTTTGG
1 AGAATAAAAAACCATTCTTTTGG
*
78962837 AGAATAAAAAACCATTCTTTTTG
1 AGAATAAAAAACCATTCTTTTGG
78962860 AGAATAAAAAA
1 AGAATAAAAAA
78962871 GCATATATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.26
Consensus pattern (23 bp):
AGAATAAAAAACCATTCTTTTGG
Found at i:78972150 original size:23 final size:23
Alignment explanation
Indices: 78972122--78972212 Score: 85
Period size: 23 Copynumber: 4.0 Consensus size: 23
78972112 GAGCAATCTA
*
78972122 GCACTTTGGTGCGATTCATTTTG
1 GCACTTTGGTGCGATTCATTCTG
* * *
78972145 GCACTTTAGTGGGATCCATTCTG
1 GCACTTTGGTGCGATTCATTCTG
* * *
78972168 GCACATCT-GTGCGACTCATTCTA
1 GCAC-TTTGGTGCGATTCATTCTG
* *
78972191 GCACTTTGATGTGATTCATTCT
1 GCACTTTGGTGCGATTCATTCT
78972213 ATGGAATGTT
Statistics
Matches: 53, Mismatches: 13, Indels: 4
0.76 0.19 0.06
Matches are distributed among these distances:
22 2 0.04
23 49 0.92
24 2 0.04
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (23 bp):
GCACTTTGGTGCGATTCATTCTG
Found at i:78983018 original size:22 final size:22
Alignment explanation
Indices: 78982976--78983021 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
78982966 GATACCATAT
*
78982976 TTAATTTTTTTGATTTATTTTC
1 TTAATTTTTTTGAATTATTTTC
* *
78982998 TTAATTTATTTTTAATTTTTTTC
1 TTAATTT-TTTTGAATTATTTTC
78983021 T
1 T
78983022 GGTCATTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.74
Consensus pattern (22 bp):
TTAATTTTTTTGAATTATTTTC
Found at i:78997809 original size:42 final size:43
Alignment explanation
Indices: 78997710--78997810 Score: 102
Period size: 42 Copynumber: 2.4 Consensus size: 43
78997700 CTTACATGGG
** *
78997710 ATCACATATCGATGCCAATAGCCTAGCTATGGTCTTACATGAT
1 ATCACATATCGATGCCAATAGCCTAGCTATGGTCTTACACAAA
* *
78997753 GTCTCATAAT-GATGCC-AT-GTCCTAGAC-ATGGTCTTACACAAA
1 ATCACAT-ATCGATGCCAATAG-CCTAG-CTATGGTCTTACACAAA
78997795 ATCACATATCGATGCC
1 ATCACATATCGATGCC
78997811 GATGCCATGT
Statistics
Matches: 47, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
41 3 0.06
42 30 0.64
43 12 0.26
44 2 0.04
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.29
Consensus pattern (43 bp):
ATCACATATCGATGCCAATAGCCTAGCTATGGTCTTACACAAA
Found at i:78997834 original size:48 final size:48
Alignment explanation
Indices: 78997763--78997981 Score: 253
Period size: 48 Copynumber: 4.6 Consensus size: 48
78997753 GTCTCATAAT
* * *
78997763 GATGCCATGTCCTAGACATGGTCTTACACAAAATCACATATCGATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGATCACATATCAATGCC
** * ** *
78997811 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACACGTCAAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGATCACATATCAATGCC
* *
78997859 GATGCCATGTCCCAGACATGGTCTTACACTAGCA-CACATATCAACGCC
1 GATGCCATGTCCCAGACATGGTCTTACACAAG-ATCACATATCAATGCC
* * * * *
78997907 GATGCCATGTCCCAGACATGGTCTTATACGAGATCTCATCTCGATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGATCACATATCAATGCC
* *
78997955 -AAGCCATGTCCTAGACATGGTCTTACA
1 GATGCCATGTCCCAGACATGGTCTTACA
78997982 TGGGATCTCA
Statistics
Matches: 146, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
47 25 0.17
48 121 0.83
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACAAGATCACATATCAATGCC
Found at i:79012055 original size:75 final size:74
Alignment explanation
Indices: 79011972--79012343 Score: 258
Period size: 75 Copynumber: 4.9 Consensus size: 74
79011962 TCATTTCTGT
*
79011972 TTTCAAAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGCCGAGGTATTTTT
1 TTTCAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGCTGAGGTATTTTT
79012037 TAAATTCTAC
65 TAAATTCTAC
* * * * * *
79012047 TTTCAAAAAAATCAACTCATATTGAGAAAGGTGAGTTGAGCCTTG-GCTCATG-TGTTGAGTCAC
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG-GCACGCTG-AG-GT-A-
* * *
79012110 TTTCAATTTCTATTTTTATGTC
60 TTT---TTT-AAATTCTA---C
**** * *
79012132 TGTTTTCTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGTACGCTGAGGTA-TTTT
1 T-TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGCTGAGGTATTTTT
* *
79012196 CAATTATTGT--
65 TAA--ATTCTAC
* *
79012206 TTGTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTA--TT
1 TT-TC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGCTGAGGTATTTT
* **
79012269 TTCAATTACTGT
64 TTAAATT-CTAC
* *
79012281 TTGTC-AAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTC-AGGACATGCTGAGGTATTTT
1 TT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGG-CACGCTGAGGTATTTT
79012344 CGATTTCTGT
Statistics
Matches: 233, Mismatches: 38, Indels: 52
0.72 0.12 0.16
Matches are distributed among these distances:
72 5 0.02
73 49 0.21
74 8 0.03
75 87 0.37
76 17 0.07
77 2 0.01
78 5 0.02
79 3 0.01
81 5 0.02
82 5 0.02
83 1 0.00
84 2 0.01
85 39 0.17
86 5 0.02
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (74 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGGCACGCTGAGGTATTTTTT
AAATTCTAC
Found at i:79012300 original size:73 final size:73
Alignment explanation
Indices: 79012140--79012360 Score: 334
Period size: 75 Copynumber: 3.0 Consensus size: 73
79012130 TCTGTTTTCT
* *
79012140 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGTACGCTGAGGTATTTTCAATTATTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
79012205 TTTGTCAAAA
66 TTTGTC--AA
*
79012215 AAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
79012280 TTTGTCAA
66 TTTGTCAA
* * * * * *
79012288 AAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCGATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
*
79012353 TTTTTCAA
66 TTTGTCAA
79012361 TTTATGTTTT
Statistics
Matches: 135, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
73 67 0.50
75 68 0.50
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (73 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTACTG
TTTGTCAA
Found at i:79012475 original size:74 final size:73
Alignment explanation
Indices: 79012354--79012583 Score: 345
Period size: 74 Copynumber: 3.1 Consensus size: 73
79012344 CGATTTCTGT
* * *
79012354 TTTTCAATTTATGTTTTCAAAAATCAATTTATATTGCTAAATGTGAATTGAGCCTCGGGTCGCAT
1 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCGGGTC-CAT
79012419 AACGAGGTA
65 AACGAGGTA
*
79012428 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCATCGGGTCACAT
1 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCGGGTC-CAT
*
79012493 AGCGAGGTA
65 AACGAGGTA
* *
79012502 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAACCTCAGGT-CATA
1 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCGGGTCCATA
*
79012566 CGCCGAGGTA
66 --ACGAGGTA
79012576 TTTTCAAT
1 TTTTCAAT
79012584 AGATTTTTTT
Statistics
Matches: 144, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
72 4 0.03
74 140 0.97
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (73 bp):
TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCGGGTCCATA
ACGAGGTA
Found at i:79012780 original size:14 final size:14
Alignment explanation
Indices: 79012763--79012798 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
79012753 AATTTTCGTT
*
79012763 TTTTCAATTTATGC
1 TTTTCAAATTATGC
*
79012777 TTTTCAAATTCTGC
1 TTTTCAAATTATGC
79012791 TTTTCAAA
1 TTTTCAAA
79012799 AAAATCAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.06, T:0.53
Consensus pattern (14 bp):
TTTTCAAATTATGC
Found at i:79013177 original size:52 final size:52
Alignment explanation
Indices: 79013121--79013295 Score: 181
Period size: 52 Copynumber: 3.2 Consensus size: 52
79013111 ATCGAAACTG
*
79013121 CAAATCTCTTCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTA
1 CAAATCCCTTCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTA
* * * ** **
79013173 CAAATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAG-AGAAGATCGAAACTA
1 CAAATCCCTTCTCCCTGAA-TC----TCC--GAAGTTTCAGT-GTAGTAGGCCGAGGCTA
* *
79013232 CAAATCTCTTCTCCCTAAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTA
1 CAAATCCCTTCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTA
79013284 CAAATCCCTTCT
1 CAAATCCCTTCT
79013296 ACTTGAATTC
Statistics
Matches: 96, Mismatches: 18, Indels: 18
0.73 0.14 0.14
Matches are distributed among these distances:
51 1 0.01
52 48 0.50
53 2 0.02
54 3 0.03
57 3 0.03
58 2 0.02
59 36 0.38
60 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (52 bp):
CAAATCCCTTCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTA
Found at i:79013259 original size:111 final size:111
Alignment explanation
Indices: 79013065--79013382 Score: 539
Period size: 111 Copynumber: 2.9 Consensus size: 111
79013055 TAAATTTTAT
*
79013065 ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGATCGAAACTGCAAATCTCT
1 ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCT
*
79013130 TCTCCCTGAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTACAA
66 TCTCCCTAAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTACAA
79013176 ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCT
1 ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCT
79013241 TCTCCCTAAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTACAA
66 TCTCCCTAAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTACAA
* ** *
79013287 ATCCCTTCTACTTGAATTCTAAGTCCTTGAAATTT-AGTAGAGAAGATCGAGGCTACAAATATCT
1 ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCT
* * * *
79013351 TCTCCCTCAATCTCGGAAGTTCCAGTGGAGTA
66 TCTCCCTAAATCTCCGAAGTTTCAGTGTAGTA
79013383 AATCATGGCT
Statistics
Matches: 197, Mismatches: 10, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
110 54 0.27
111 143 0.73
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (111 bp):
ATCCCTTCTACTTGAATTCTAAGTCCTTGAAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCT
TCTCCCTAAATCTCCGAAGTTTCAGTGTAGTAGGCCGAGGCTACAA
Found at i:79024040 original size:6 final size:6
Alignment explanation
Indices: 79024025--79024061 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
79024015 TAAAACTACC
79024025 TTTTTA -TTTTA TTTTTA TTTTTA TTTTTA -TTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
79024062 CATCCTTAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 10 0.34
6 19 0.66
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:79024041 original size:11 final size:11
Alignment explanation
Indices: 79024025--79024061 Score: 65
Period size: 11 Copynumber: 3.3 Consensus size: 11
79024015 TAAAACTACC
79024025 TTTTTATTTTA
1 TTTTTATTTTA
79024036 TTTTTATTTTTA
1 TTTTTA-TTTTA
79024048 TTTTTATTTTA
1 TTTTTATTTTA
79024059 TTT
1 TTT
79024062 CATCCTTAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:79024047 original size:17 final size:17
Alignment explanation
Indices: 79024025--79024061 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
79024015 TAAAACTACC
79024025 TTTTTA-TTTTATTTTTA
1 TTTTTATTTTTA-TTTTA
79024042 TTTTTATTTTTATTTTA
1 TTTTTATTTTTATTTTA
79024059 TTT
1 TTT
79024062 CATCCTTAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTTATTTTTATTTTA
Found at i:79026004 original size:27 final size:27
Alignment explanation
Indices: 79025974--79026252 Score: 344
Period size: 27 Copynumber: 10.3 Consensus size: 27
79025964 TACTGAAATG
* *
79025974 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
79026001 CCCTCGATTTATAGGATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
79026028 CCCTCGATTTATAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
79026055 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
79026082 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
79026109 ACCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
79026136 CCCTTGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
79026163 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * * *
79026190 CCCTCGATTTACAAAATTATCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
79026217 CCATC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTATAGAATTACCGTTTTA
*
79026244 CCCCCGATT
1 CCCTCGATT
79026253 GTGAAATTAC
Statistics
Matches: 221, Mismatches: 29, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.00
27 219 0.99
28 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:79026101 original size:81 final size:81
Alignment explanation
Indices: 79025974--79026252 Score: 407
Period size: 81 Copynumber: 3.4 Consensus size: 81
79025964 TACTGAAATG
* * * *
79025974 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGGATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
*
79026039 TAAAATTACCGTTTTA
66 CAAAATTACCGTTTTA
* *
79026055 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTAACCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
79026120 CAAAATTACCGTTTTA
66 CAAAATTACCGTTTTA
*
79026136 CCCTTGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
* *
79026201 CAAAATTATCATTTTA
66 CAAAATTACCGTTTTA
* * * * *
79026217 CCATC-AGTTTACAAAATTACCGTTTTACCCCCGATT
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTCGATT
79026253 GTGAAATTAC
Statistics
Matches: 179, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
80 1 0.01
81 178 0.99
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.39
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
CAAAATTACCGTTTTA
Found at i:79026314 original size:27 final size:27
Alignment explanation
Indices: 79026284--79026434 Score: 180
Period size: 27 Copynumber: 5.6 Consensus size: 27
79026274 TGTAGGATAG
79026284 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
79026311 AATTACCAAAATACCCTTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
79026338 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
79026365 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
* **
79026392 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAGTTTGTAA
79026419 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
79026435 TTGACTTTCT
Statistics
Matches: 108, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
26 5 0.05
27 99 0.92
28 4 0.04
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:79026324 original size:54 final size:53
Alignment explanation
Indices: 79026251--79026434 Score: 172
Period size: 54 Copynumber: 3.4 Consensus size: 53
79026241 TTACCCCCGA
* ** ** *
79026251 TTGTGAAATTACTGAAATACCCCTGTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTGTTTG-TAAAATTACCAAAATACCCCTAGT
* * * *
79026305 TTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCGAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCT-GTTTGTAAAATTACCAAAATACCCCTAGT
* * ** *
79026359 TTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCC-CTGTTTGTAAAATTACCAAAATACCCCTAGT
**
79026413 TTACAAAATTA-CAGAAATACCC
1 TTGTAAAATTACCA-AAATACCC
79026435 TTGACTTTCT
Statistics
Matches: 104, Mismatches: 23, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
53 1 0.01
54 100 0.96
55 3 0.03
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (53 bp):
TTGTAAAATTACCAAAATACCCCTGTTTGTAAAATTACCAAAATACCCCTAGT
Found at i:79026369 original size:81 final size:81
Alignment explanation
Indices: 79026284--79026433 Score: 221
Period size: 81 Copynumber: 1.9 Consensus size: 81
79026274 TGTAGGATAG
* * * ** *
79026284 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCGAA
1 AATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAA
79026348 ATACCACTGGTTTGTGA
65 ATACCACTGGTTTGTGA
*
79026365 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
1 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
79026430 TACC
66 TACC
79026434 CTTGACTTTC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
81 60 0.98
82 1 0.02
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:79026487 original size:28 final size:27
Alignment explanation
Indices: 79026309--79026498 Score: 98
Period size: 27 Copynumber: 6.9 Consensus size: 27
79026299 CCTAGTTTGT
** * **
79026309 AAAATTACCAAAATACCCTTAGTTTGT
1 AAAATTACTGAAATACCCTTGGTTTAC
* **
79026336 AAAATTACCGAAATACCAC-TGGTTTGT
1 AAAATTACTGAAATACC-CTTGGTTTAC
* * *** **
79026363 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACTGAAATACCCTTGGTTTAC
** * **
79026390 AAAATTACCAAAATACCCCTAATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
79026417 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACTGAAATACCCTTG-GTTTAC
*
79026444 TAAAAATTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
79026473 AAAATTTACTGAAATACCCTTGGTTT
1 AAAA-TTACTGAAATACCCTTGGTTT
79026499 GTAGATTTAC
Statistics
Matches: 133, Mismatches: 21, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
26 1 0.01
27 87 0.65
28 25 0.19
29 20 0.15
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:79027462 original size:25 final size:25
Alignment explanation
Indices: 79027428--79027493 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 25
79027418 AGTGCTAAAT
*
79027428 GGGCTCTGCCCTAGTTTACC-GAAAA
1 GGGCTTTGCCCTAGTTTACCAG-AAA
*
79027453 GGGCTTTG-CCTCAGTTTATCAGAAA
1 GGGCTTTGCCCT-AGTTTACCAGAAA
*
79027478 GGGCTTTGCCCCAGTT
1 GGGCTTTGCCCTAGTT
79027494 ATTAAAAGAG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
24 3 0.09
25 29 0.83
26 3 0.09
ACGTcount: A:0.20, C:0.26, G:0.26, T:0.29
Consensus pattern (25 bp):
GGGCTTTGCCCTAGTTTACCAGAAA
Found at i:79027506 original size:24 final size:23
Alignment explanation
Indices: 79027449--79027520 Score: 72
Period size: 25 Copynumber: 3.0 Consensus size: 23
79027439 TAGTTTACCG
*
79027449 AAAAGGGCTTTGCCTCAGTTTATC
1 AAAAGGGCTTTGCCCCAG-TTATC
*
79027473 AGAAAGGGCTTTGCCCCAGTTATT
1 A-AAAGGGCTTTGCCCCAGTTATC
**
79027497 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
79027521 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
23 4 0.10
24 13 0.32
25 24 0.59
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATC
Found at i:79027753 original size:31 final size:31
Alignment explanation
Indices: 79027714--79027792 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
79027704 CATTTACAGT
*
79027714 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
79027745 AATGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
79027776 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
79027793 AACCGTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:79038300 original size:27 final size:27
Alignment explanation
Indices: 79038242--79038306 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
79038232 TGAGCCATAT
*
79038242 TGGGAAGCTCACAAAGAGACAATTTAA
1 TGGGAAGCTCACAAAGAGACAATATAA
* *
79038269 TGGGAACCTCACAAAGAG-CCATATAA
1 TGGGAAGCTCACAAAGAGACAATATAA
79038295 TCGGGAAGCTCA
1 T-GGGAAGCTCA
79038307 TAAGAGCTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 7 0.21
27 26 0.79
ACGTcount: A:0.40, C:0.20, G:0.23, T:0.17
Consensus pattern (27 bp):
TGGGAAGCTCACAAAGAGACAATATAA
Found at i:79046811 original size:40 final size:40
Alignment explanation
Indices: 79046765--79046989 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
79046755 CATGCGCAAG
* * *
79046765 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
79046805 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
79046845 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
79046885 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
79046925 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
79046966 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
79046990 CATTCGAATA
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:79050862 original size:41 final size:43
Alignment explanation
Indices: 79050776--79050876 Score: 109
Period size: 41 Copynumber: 2.4 Consensus size: 43
79050766 AGCTATAACG
**
79050776 ATATCGCACACTTAGTGCCATCACATTGAACCAAAACTATCTCA
1 ATATCGCACACTTAGTGCCA-CACATAAAACCAAAACTATCTCA
** *
79050820 ATATCGCACACTTAGTG-C-CACATAAAACCAAGGCTATTTCA
1 ATATCGCACACTTAGTGCCACACATAAAACCAAAACTATCTCA
* *
79050861 AT-TCGGACACTAAGTG
1 ATATCGCACACTTAGTG
79050877 TTGTATATAG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
40 12 0.24
41 20 0.40
43 1 0.02
44 17 0.34
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.25
Consensus pattern (43 bp):
ATATCGCACACTTAGTGCCACACATAAAACCAAAACTATCTCA
Found at i:79061094 original size:40 final size:40
Alignment explanation
Indices: 79061039--79061183 Score: 222
Period size: 40 Copynumber: 3.6 Consensus size: 40
79061029 CGGATGATAA
*
79061039 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
79061079 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAT
* *
79061119 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
*
79061159 CCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
79061184 AGCAAGTAGT
Statistics
Matches: 98, Mismatches: 4, Indels: 6
0.91 0.04 0.06
Matches are distributed among these distances:
39 1 0.01
40 96 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:79061198 original size:80 final size:80
Alignment explanation
Indices: 79061039--79061215 Score: 225
Period size: 80 Copynumber: 2.2 Consensus size: 80
79061029 CGGATGATAA
* * *
79061039 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACTAATTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAACTAATACCGGGCTAAGTCCCAAAGGCATTTG
* **
79061104 TGTGAGTTACTATAT
66 AGCAAGTTACTATAT
*
79061119 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCAAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAACTAAT-ACCGGGCTAAGTCCCAAAGGCATTT
*
79061183 GAGCAAG-TAGTTATAT
65 GAGCAAGTTA-CTATAT
* *
79061199 TC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
79061216 ATGCTTGGGT
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
79 18 0.21
80 67 0.79
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAACTAATACCGGGCTAAGTCCCAAAGGCATTTG
AGCAAGTTACTATAT
Found at i:79061483 original size:22 final size:21
Alignment explanation
Indices: 79061442--79061485 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
79061432 GAATGTGCAT
79061442 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
79061464 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
79061486 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:79069357 original size:40 final size:40
Alignment explanation
Indices: 79069302--79069486 Score: 300
Period size: 40 Copynumber: 4.6 Consensus size: 40
79069292 CGGATGATAA
* *
79069302 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
79069342 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
79069382 CCGGGCTAAGTCTCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
79069422 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
79069462 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
79069487 AGCAAGTAGT
Statistics
Matches: 137, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 136 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:79069501 original size:80 final size:79
Alignment explanation
Indices: 79069298--79069518 Score: 293
Period size: 80 Copynumber: 2.8 Consensus size: 79
79069288 TATTCGGATG
* *
79069298 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ATTATA-TCCGGGCTAAGTCCCGAAGGC
79069362 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * ** * *
79069378 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCTCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TATTATATCCGGGCTAAGTCCCGAAGGCA
79069443 TTTGTGCGAGTTACT
65 TTTGTGCGAGTTACT
* * *
79069458 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGTTATATTC-GGCTAAATCCCGAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-TTATATCCGGGCTAAGTCCCGAAG
79069519 ATGCTTGGGT
Statistics
Matches: 124, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
79 15 0.12
80 107 0.86
81 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTATTATATCCGGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:79069786 original size:22 final size:21
Alignment explanation
Indices: 79069745--79069788 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
79069735 GAATGTGCAT
79069745 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
79069767 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
79069789 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:79074246 original size:40 final size:40
Alignment explanation
Indices: 79074209--79074393 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
79074199 GCTACTCGTT
*
79074209 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
79074249 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
79074289 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
79074328 CAATTGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
79074369 CAAAT-CCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79074394 CATCATTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 76 0.62
41 13 0.11
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:79074320 original size:79 final size:82
Alignment explanation
Indices: 79074209--79074393 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
79074199 GCTACTCGTT
* *
79074209 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATTGCCTTC-GGATCTTAACCC
* *
79074272 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
79074289 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAATTGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATTGCCTTCGGATCTTAACCCG
* *
79074352 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
79074369 CAAAT-CCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79074394 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 35 0.38
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATTGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:79082434 original size:20 final size:20
Alignment explanation
Indices: 79082409--79082453 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
79082399 AGGGACTAAA
* *
79082409 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
79082429 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
79082449 ATGAA
1 ATGAA
79082454 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:79086572 original size:140 final size:140
Alignment explanation
Indices: 79086415--79086695 Score: 481
Period size: 140 Copynumber: 2.0 Consensus size: 140
79086405 TTTTCAGTTA
79086415 AAGGATTAATTTGATAAAATATTAAAATTTATATGGAATTCTTGTGAATTTTGGATAATATTGAA
1 AAGGATTAATTTGATAAAATATTAAAATTTATATGGAATTCTTGTGAATTTTGGATAATATTGAA
**
79086480 TTGTACTAAAATAAGAATAAATTCGGCTAGCATGCATGTTTGTGAAATTTAGTTAAATTCGAAAG
66 TTGTACTAAAATAAGAATAAATTCAACTAGCATGCATGTTTGTGAAATTTAGTTAAATTCGAAAG
79086545 TTTTGGATTT
131 TTTTGGATTT
79086555 AAGGATTAATTTGATAAAATATTAAAATTTATATGGAATTCTTGTGAATTTTGGATAATATTGAA
1 AAGGATTAATTTGATAAAATATTAAAATTTATATGGAATTCTTGTGAATTTTGGATAATATTGAA
* * * * * *
79086620 TTGTACTACAATAAGAATAAATTCAACTAGCATGCGTGTTTGTGGAATTTTGTTAAATTTGAATG
66 TTGTACTAAAATAAGAATAAATTCAACTAGCATGCATGTTTGTGAAATTTAGTTAAATTCGAAAG
*
79086685 TTTTGGCTTT
131 TTTTGGATTT
79086695 A
1 A
79086696 CGGACTAAAT
Statistics
Matches: 132, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
140 132 1.00
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.41
Consensus pattern (140 bp):
AAGGATTAATTTGATAAAATATTAAAATTTATATGGAATTCTTGTGAATTTTGGATAATATTGAA
TTGTACTAAAATAAGAATAAATTCAACTAGCATGCATGTTTGTGAAATTTAGTTAAATTCGAAAG
TTTTGGATTT
Found at i:79087088 original size:16 final size:16
Alignment explanation
Indices: 79087067--79087098 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
79087057 ATAATTGGTG
79087067 AATGTTGTGATTATAT
1 AATGTTGTGATTATAT
79087083 AATGTTGTGATTATAT
1 AATGTTGTGATTATAT
79087099 GTTTTTGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (16 bp):
AATGTTGTGATTATAT
Found at i:79098815 original size:40 final size:40
Alignment explanation
Indices: 79098753--79098854 Score: 127
Period size: 40 Copynumber: 2.6 Consensus size: 40
79098743 AAACCAAGTA
* * * *
79098753 CCTTCGGGATTTA-ACCGGATATAGCTA-CTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAGCTCGCACAAATG
* *
79098792 CCTTCGGGACTTAGCCCGGATATAGTAGTTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
79098832 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
79098855 NNNNNNNNNN
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 14 0.25
40 41 0.75
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
Found at i:79113770 original size:40 final size:39
Alignment explanation
Indices: 79113580--79113763 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
79113570 CGAATGATGT
* * * *
79113580 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTAACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
79113620 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
79113660 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTAGTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
79113698 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
79113739 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
79113764 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:79113785 original size:79 final size:78
Alignment explanation
Indices: 79113580--79113796 Score: 235
Period size: 79 Copynumber: 2.7 Consensus size: 78
79113570 CGAATGATGT
* * * *
79113580 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTAACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAGCTATATCCGG-TTAAG-TCCGAAGGCATTT
*
79113644 GTGCGAGTTACTAATT
63 GTGCGAGTTACTAATA
* *
79113660 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTAG-TAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
79113723 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
79113739 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
79113797 TACGTGATTC
Statistics
Matches: 116, Mismatches: 13, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
78 3 0.03
79 67 0.58
80 46 0.40
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:79117216 original size:40 final size:40
Alignment explanation
Indices: 79117161--79117341 Score: 150
Period size: 40 Copynumber: 4.5 Consensus size: 40
79117151 GGCACAACCA
* * * *
79117161 CCCTTCGGAATCAAGCACGATTCTTAACACTGGCTC-AAAG
1 CCCTTCGAAACCAAGCTCGATT-ATAACACTGGCTCAAAAG
* *** * *
79117201 CCCTTCGAGACCAAGCTCGGATTAGGCCACTGGCTCGAAGG
1 CCCTTCGAAACCAAGCTC-GATTATAACACTGGCTCAAAAG
* * *
79117242 CCCTTCGAAACTAAG-TCCGGTTATGACACTGGCTCAAAAG
1 CCCTTCGAAACCAAGCT-CGATTATAACACTGGCTCAAAAG
* * * *
79117282 CCCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAAG
1 CCCTTCGAAACCAAGCTCGATTA-TAACACTGGCTCAAAAG
*
79117323 CCCTTCGAACCCAAGCTCG
1 CCCTTCGAAACCAAGCTCG
79117342 GACTTACACC
Statistics
Matches: 115, Mismatches: 21, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
40 62 0.54
41 53 0.46
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (40 bp):
CCCTTCGAAACCAAGCTCGATTATAACACTGGCTCAAAAG
Found at i:79117325 original size:41 final size:41
Alignment explanation
Indices: 79117188--79117331 Score: 179
Period size: 40 Copynumber: 3.6 Consensus size: 41
79117178 CGATTCTTAA
* * *
79117188 CACTGGCTC-AAAGCCCTTCGAGACCAAGCTCGG--ATTAGG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTA-G
* * * *
79117227 CCACTGGCTCGAAGGCCCTTCGAAACTAAGTCCGGTTATGA-
1 -CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
79117268 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
79117309 CACTGGCTCAAAAGCCCTTCGAA
1 CACTGGCTCAAAAGCCCTTCGAA
79117332 CCCAAGCTCG
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
40 45 0.50
41 42 0.47
43 3 0.03
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (41 bp):
CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
Found at i:79126544 original size:40 final size:41
Alignment explanation
Indices: 79126350--79126530 Score: 223
Period size: 40 Copynumber: 4.5 Consensus size: 41
79126340 ATGATGTCCA
* * *
79126350 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-ATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAATCCG
* *
79126390 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAATCCG
*
79126430 GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATCCG
*
79126469 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATCCG
*
79126509 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
79126531 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (41 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATCCG
Found at i:79133209 original size:44 final size:46
Alignment explanation
Indices: 79133105--79133273 Score: 132
Period size: 44 Copynumber: 3.6 Consensus size: 46
79133095 GGGATAAATT
* * ** *
79133105 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATACATG-CAT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACTAAC-T-C-TGTCAG
*
79133155 GCTGATGCATGTCCCAGACATGTCTTACACTAGTAC-AACTCT-T-A-
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-ACTAACTCTGTCAG
** * *
79133199 GCCGATGCATGTCCCAGACACATCTTACACTGGCTATCTCTGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGACTAACTCTGTC-AG
*
79133246 GCCGATGCATGTCCCAAACATGTCTTAC
1 GCCGATGCATGTCCCAGACATGTCTTAC
79133274 TCTGCCACTT
Statistics
Matches: 98, Mismatches: 13, Indels: 19
0.75 0.10 0.15
Matches are distributed among these distances:
42 1 0.01
43 6 0.06
44 29 0.30
45 1 0.01
46 2 0.02
47 26 0.27
48 10 0.10
49 16 0.16
50 7 0.07
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTAACTCTGTCAG
Found at i:79133272 original size:47 final size:45
Alignment explanation
Indices: 79133105--79133370 Score: 159
Period size: 47 Copynumber: 5.7 Consensus size: 45
79133095 GGGATAAATT
* *
79133105 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATACATG-CA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-T-C-TGTCA
* * *
79133154 TGCTGATGCATGTCCCAGACATGTCTTACACTAG-TACAACTCT-T-A
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCT--ATCTCTGTCA
**
79133199 GCCGATGCATGTCCCAGACACATCTTACACTGGCTATCTCTGTCGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTC-A
* * * *
79133245 GGCCGATGCATGTCCCAAACATGTCTTACTCTGCCACTTATTTCTGT-A
1 -GCCGATGCATGTCCCAGACATGTCTTACACTG--GC-TATCTCTGTCA
* * * * * *
79133293 -CCGATGCCATGTACCAGACATATTCTTACACTGGCTTTCATAATAT-G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-T-CTGTCA
* *
79133340 GCTGAAGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
79133371 AGCGCACAAA
Statistics
Matches: 170, Mismatches: 30, Indels: 36
0.72 0.13 0.15
Matches are distributed among these distances:
43 5 0.03
44 30 0.18
45 4 0.02
46 19 0.11
47 57 0.34
48 25 0.15
49 16 0.09
50 14 0.08
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTCA
Found at i:79145661 original size:42 final size:42
Alignment explanation
Indices: 79145614--79145698 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
79145604 GTTAAATAAA
* *
79145614 TGGGCAGCCCAGAACCGTCCATATGCTGACCCAAATCAGAAT
1 TGGGCAACCCAGAACCGTCCATATGCTGACCCAAATCAAAAT
79145656 TGGGCAACCCAGAACCGTCCATATGCTGACCCAAATCAAAAT
1 TGGGCAACCCAGAACCGTCCATATGCTGACCCAAATCAAAAT
79145698 T
1 T
79145699 TTAGCTGATT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.33, C:0.31, G:0.19, T:0.18
Consensus pattern (42 bp):
TGGGCAACCCAGAACCGTCCATATGCTGACCCAAATCAAAAT
Found at i:79150024 original size:48 final size:46
Alignment explanation
Indices: 79149906--79150026 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 46
79149896 TCGTAGCCAC
* *
79149906 GCATGTCCCAGACA-GTCTTACACTAGCTTACGTCTCGAGGCCAAT
1 GCATGTCCCAGACATGTCTTACACTAGCCTACGTCTCAAGGCCAAT
* * * *
79149951 GCATGTCTCAGAAATGTCTTACACTAGCACT-CGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGC-CTACGTCTCAAGGCCAAT
79149997 GCCATGTCCCAGACATGGTCTTACACTAGC
1 G-CATGTCCCAGACAT-GTCTTACACTAGC
79150027 TCTCACAAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
45 12 0.19
46 26 0.41
47 13 0.20
48 13 0.20
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (46 bp):
GCATGTCCCAGACATGTCTTACACTAGCCTACGTCTCAAGGCCAAT
Found at i:79161175 original size:44 final size:45
Alignment explanation
Indices: 79161055--79161183 Score: 165
Period size: 45 Copynumber: 2.9 Consensus size: 45
79161045 ACATGCGGAT
* ** * *
79161055 TCATAAAAGAATAGTT-ATAGATATCACAGATTCATATATACAAAA
1 TCATAGAAGAATA-TTCATAGATATGGCAGATTCATACATGCAAAA
*
79161100 TCATAGAAGAATATTCATAGATATGGCAGATTCATACATGCAAAT
1 TCATAGAAGAATATTCATAGATATGGCAGATTCATACATGCAAAA
79161145 TCATAGAA-AATGA-TCATAGATATGGCAGATTCATACATG
1 TCATAGAAGAAT-ATTCATAGATATGGCAGATTCATACATG
79161184 TGAACTTTGT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
44 31 0.41
45 45 0.59
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.29
Consensus pattern (45 bp):
TCATAGAAGAATATTCATAGATATGGCAGATTCATACATGCAAAA
Found at i:79163033 original size:30 final size:31
Alignment explanation
Indices: 79162974--79163033 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
79162964 ATTGCAAAAA
* *
79162974 AATCAAATTTCATGTATCAATTTGCATATTC
1 AATCAAAATTCATGTATCAATTTGAATATTC
*
79163005 AATCAAAATTCATGTAT-AATTTTAATATT
1 AATCAAAATTCATGTATCAATTTGAATATT
79163034 TATCCCTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.43
Consensus pattern (31 bp):
AATCAAAATTCATGTATCAATTTGAATATTC
Found at i:79168054 original size:5 final size:5
Alignment explanation
Indices: 79168044--79168077 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
79168034 AATTTGTGAA
79168044 AAAAT AAAAT AAAAT AAAAT AAAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT AAA
79168078 GAACACACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:79171814 original size:31 final size:31
Alignment explanation
Indices: 79171776--79171837 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
79171766 TTTAAGTTTA
79171776 CTTTATGGAGATAACATAAGTGTTTATTATT
1 CTTTATGGAGATAACATAAGTGTTTATTATT
79171807 CTTTATGGAGATAACATAAGTGTTTATTATT
1 CTTTATGGAGATAACATAAGTGTTTATTATT
79171838 GATTGATTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.06, G:0.16, T:0.45
Consensus pattern (31 bp):
CTTTATGGAGATAACATAAGTGTTTATTATT
Found at i:79191886 original size:79 final size:81
Alignment explanation
Indices: 79191718--79191902 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 81
79191708 GCTACTCGTT
* *
79191718 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCG
* *
79191782 GATTTAATAACTCGCAC
65 GATATAATAACTAGCAC
* *
79191799 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTT-AGTCC
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACT-C
** *
79191860 GGATATGGTCACTTAGCA-
64 GGATATAATAAC-TAGCAC
79191878 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
79191903 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
78 5 0.06
79 56 0.63
80 25 0.28
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGG
ATATAATAACTAGCAC
Found at i:79191902 original size:40 final size:40
Alignment explanation
Indices: 79191699--79191902 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
79191689 CGGAATTTAA
** *
79191699 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
79191739 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
79191779 TCGGATTTAATAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
79191818 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
79191858 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
79191898 CCGGA
1 CCGGA
79191903 CATCATTCGA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.23
40 92 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:79199414 original size:39 final size:40
Alignment explanation
Indices: 79199315--79199458 Score: 127
Period size: 40 Copynumber: 3.6 Consensus size: 40
79199305 CGAATGATGT
* * *
79199315 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAA
*** *
79199355 CCATACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-A
* *
79199395 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAA
*
79199434 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
79199459 AACGAGTAGC
Statistics
Matches: 84, Mismatches: 13, Indels: 14
0.76 0.12 0.13
Matches are distributed among these distances:
39 33 0.39
40 40 0.48
41 10 0.12
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAA
Found at i:79199465 original size:40 final size:39
Alignment explanation
Indices: 79199367--79199458 Score: 123
Period size: 39 Copynumber: 2.3 Consensus size: 39
79199357 ATACTAAGAT
* *
79199367 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGC
* *
79199406 CCGAAGGCATTGGTGCGAGTTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-C
79199446 CCGAAGGCATTTG
1 CCGAAGGCATTTG
79199459 AACGAGTAGC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.04
39 31 0.67
40 13 0.28
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGC
Found at i:79199811 original size:47 final size:47
Alignment explanation
Indices: 79199681--79200569 Score: 1472
Period size: 47 Copynumber: 18.6 Consensus size: 47
79199671 AAGGGTTGGT
79199681 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
79199728 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
79199777 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
79199824 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
79199873 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
79199922 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
79199969 AATGTGAAATTGTATATATATGAGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
79200018 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
79200065 AATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
79200112 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
79200161 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
79200208 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGAGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
79200257 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGGGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
79200306 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
79200353 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
79200402 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
79200449 AATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
79200496 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
79200543 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
79200570 TCCCGAAGGG
Statistics
Matches: 801, Mismatches: 29, Indels: 24
0.94 0.03 0.03
Matches are distributed among these distances:
47 431 0.54
49 370 0.46
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:79199845 original size:96 final size:94
Alignment explanation
Indices: 79199681--79200569 Score: 1472
Period size: 96 Copynumber: 9.3 Consensus size: 94
79199671 AAGGGTTGGT
79199681 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
79199746 TATGTGATAGGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
79199777 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
79199842 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
79199873 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
79199938 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
79199969 AATGTGAAATTGTATATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
79200034 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
79200065 AATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
79200130 TATGTGATAGGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
79200161 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
79200226 TATGTGATAAGGCCTAATGGCCGATGAGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
79200257 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGGGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
79200322 TATGTGATAAGGCCTAATGGCCGATGTGATA
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
79200353 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
79200418 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
79200449 AATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * *
79200514 TGTGACAGGGCCGAGTGGCCAACGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* *
79200543 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
79200570 TCCCGAAGGG
Statistics
Matches: 760, Mismatches: 25, Indels: 18
0.95 0.03 0.02
Matches are distributed among these distances:
94 148 0.19
96 517 0.68
98 95 0.12
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:79200390 original size:384 final size:384
Alignment explanation
Indices: 79199681--79200569 Score: 1638
Period size: 384 Copynumber: 2.3 Consensus size: 384
79199671 AAGGGTTGGT
*
79199681 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
79199746 TATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
79199811 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
131 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGAGATGAAT
*
79199876 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
196 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGGGATGAATGTGAAAGTGTATATAT
* *
79199941 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTGTATATATATGAGATAAGGCCTAATG
261 GTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATATGAGATAAGGCCTAATG
79200006 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
326 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
79200065 AATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
79200130 TATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
79200195 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGAGATGAAT
131 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGAGATGAAT
79200260 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGGGATGAATGTGAAAGTGTATATAT
196 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGGGATGAATGTGAAAGTGTATATAT
*
79200325 GTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
261 GTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATATGAGATAAGGCCTAATG
79200390 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
326 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
79200449 AATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * *
79200512 TATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 TATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
79200570 TCCCGAAGGG
Statistics
Matches: 491, Mismatches: 14, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
382 55 0.11
384 436 0.89
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (384 bp):
AATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGAGATGAAT
GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGGGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATATGAGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:79200744 original size:37 final size:37
Alignment explanation
Indices: 79200688--79200766 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
79200678 CCGAGCTCTA
* * *
79200688 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
79200725 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
79200762 AAGAC
1 AAGAC
79200767 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:79204909 original size:39 final size:40
Alignment explanation
Indices: 79204795--79204977 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
79204785 GCTACTCGTT
*
79204795 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
79204835 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
79204875 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
79204914 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
79204955 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
79204978 AACATCATTC
Statistics
Matches: 124, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 77 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:79204939 original size:79 final size:80
Alignment explanation
Indices: 79204797--79204977 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
79204787 TACTCGTTCA
* *
79204797 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
79204862 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
* **
79204877 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTTGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
79204939 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
79204956 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
79204978 AACATCATTC
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 4 0.05
79 58 0.67
80 25 0.29
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:79212368 original size:6 final size:6
Alignment explanation
Indices: 79212357--79212383 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
79212347 TTGCCTTACC
79212357 TTTTAT TTTTAT TTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTT
79212384 GTAGCTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:79220671 original size:47 final size:45
Alignment explanation
Indices: 79220479--79220673 Score: 144
Period size: 46 Copynumber: 4.2 Consensus size: 45
79220469 TGCGAGAGCT
* * * *
79220479 AGTGTAAGACCATGTCTGGGACATGGCATCAACATTGAG--ACAAGTGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCTTCGAC-TTGAGATATAAG-CC
* * * * * **
79220526 TGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCTTC-GACTTGAGATATAAGCC
* * *
79220572 AGTGTAAGACATGTCTGGGACATGCGTCGGCTATGAGATGAT-AGTC
1 AGTGTAAGACATGTCTGGGACATGCTTCGACT-TGAGAT-ATAAGCC
* *
79220618 AATGTAAGACCATGTCTGGGACATGGCTTTGACTTGAGATATAAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCTTCGACTTGAGATATAAGCC
79220665 AGTGTAAGA
1 AGTGTAAGA
79220674 TAGTATCTGG
Statistics
Matches: 118, Mismatches: 22, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
45 12 0.10
46 57 0.48
47 43 0.36
48 6 0.05
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCTTCGACTTGAGATATAAGCC
Found at i:79222228 original size:48 final size:49
Alignment explanation
Indices: 79222156--79222425 Score: 197
Period size: 48 Copynumber: 5.7 Consensus size: 49
79222146 ATGTCAAGCC
* * *
79222156 GATGCCATGTCCCAGACAGGTCTTACACTTGCTTGCATATCTCGAGGTT
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTTGCATATCTCGAGGCT
* * * ** * *
79222205 GATG-CATGTTCCATACATGTCTTACACTAGC-T-C-TCGTCTTAATGCC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTTGCAT-ATCTCGAGGCT
* *
79222251 GATGTCATGTCCCAGACATGGTCTTACACTAGCTTGCATATATCGAGGCT
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCTTGCATATCTCGAGGCT
* * ** * *
79222301 GATG-CATGTCCCACACATGTCTTACACTAGC-T-C-TCGTCTTAATGCC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTTGCAT-ATCTCGAGGCT
* * * *
79222347 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATA-AT-GTGGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCT-TGCATATCTCGAGGCT
79222395 GATG-CATGTCCCTA-ACATGTCTTACACTAGC
1 GATGCCATGTCCC-AGACATGTCTTACACTAGC
79222426 ACACATCCAT
Statistics
Matches: 175, Mismatches: 33, Indels: 29
0.74 0.14 0.12
Matches are distributed among these distances:
45 2 0.01
46 32 0.18
47 39 0.22
48 69 0.39
49 19 0.11
50 12 0.07
51 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.30
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGTCTTACACTAGCTTGCATATCTCGAGGCT
Found at i:79222290 original size:96 final size:96
Alignment explanation
Indices: 79222153--79222425 Score: 412
Period size: 96 Copynumber: 2.9 Consensus size: 96
79222143 CACATGTCAA
* * * *
79222153 GCCGATGCCATGTCCCAGACA-GGTCTTACACTTGCTTGCATATCTCGAGGTTGATGCATGTTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTGCATATATCGAGGCTGATGCATGTCCC
*
79222217 ATACATGTCTTACACTAGCTCTCGTCTTAAT
66 ACACATGTCTTACACTAGCTCTCGTCTTAAT
*
79222248 GCCGATGTCATGTCCCAGACATGGTCTTACACTAGCTTGCATATATCGAGGCTGATGCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTGCATATATCGAGGCTGATGCATGTCCC
79222313 ACACATGTCTTACACTAGCTCTCGTCTTAAT
66 ACACATGTCTTACACTAGCTCTCGTCTTAAT
* * *
79222344 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATA-AT-GTGGCCGATGCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TGCATATATCGAGGCTGATGCATGTCC
79222406 CTA-ACATGTCTTACACTAGC
65 C-ACACATGTCTTACACTAGC
79222426 ACACATCCAT
Statistics
Matches: 165, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
94 33 0.20
95 23 0.14
96 108 0.65
97 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTGCATATATCGAGGCTGATGCATGTCCC
ACACATGTCTTACACTAGCTCTCGTCTTAAT
Found at i:79224917 original size:51 final size:51
Alignment explanation
Indices: 79224854--79224979 Score: 162
Period size: 51 Copynumber: 2.5 Consensus size: 51
79224844 CAATCAAATC
* * * *
79224854 TCTAAGAATATAAAATCATATCTTCTAAGATTACCTATCTTATCTAAGATA
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
* ** * * *
79224905 TGTAATCTTATAAAATAATATCTTATAAGATTGCATATCATATCTAAGATC
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
79224956 TCTAAGATTATAAAATCATATCTT
1 TCTAAGATTATAAAATCATATCTT
79224980 TCAAGTTCAT
Statistics
Matches: 61, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.41, C:0.13, G:0.06, T:0.39
Consensus pattern (51 bp):
TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
Found at i:79230085 original size:51 final size:51
Alignment explanation
Indices: 79229969--79230094 Score: 162
Period size: 51 Copynumber: 2.5 Consensus size: 51
79229959 TTACAATCAA
* * * * *
79229969 ATCTCTAAGAATATAAAATCATATCTTCTAAGATTACCTATCTTATCTAAG
1 ATCTCTAAGATTATAAAATCATATATTATAAGATTACATATCATATCTAAG
* * ** *
79230020 ATATGTAATCTTATAAAATAATATATTATAAGATTACATATCATATCTAAG
1 ATCTCTAAGATTATAAAATCATATATTATAAGATTACATATCATATCTAAG
79230071 ATCTCTAAGATTATAAAATCATAT
1 ATCTCTAAGATTATAAAATCATAT
79230095 CTTTCAAGAT
Statistics
Matches: 60, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.44, C:0.13, G:0.06, T:0.38
Consensus pattern (51 bp):
ATCTCTAAGATTATAAAATCATATATTATAAGATTACATATCATATCTAAG
Found at i:79239785 original size:21 final size:21
Alignment explanation
Indices: 79239761--79239830 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
79239751 CATCATGAAC
79239761 TCAGACCATAACTCAATGAGT
1 TCAGACCATAACTCAATGAGT
*
79239782 TCAGATGCCACATATA-TC-ATGAGC
1 TCAGA---C-CATA-ACTCAATGAGT
*
79239806 TCAGACCACAACTCAATGAGT
1 TCAGACCATAACTCAATGAGT
79239827 TCAG
1 TCAG
79239831 GTCACATATA
Statistics
Matches: 39, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
19 1 0.03
20 5 0.13
21 15 0.38
24 11 0.28
25 6 0.15
26 1 0.03
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.23
Consensus pattern (21 bp):
TCAGACCATAACTCAATGAGT
Found at i:79246520 original size:51 final size:50
Alignment explanation
Indices: 79246445--79246543 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 50
79246435 CTACCTCATA
*
79246445 ACATGTATACATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGTT
1 ACATGAATACATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGTT
*
79246495 ACATGAATCACATCCACT-ATGAACTCAGACCTCTCAACGAGCTCAGATG
1 ACATGAAT-ACATCCA-TAATGAACTCAGACCACTCAACGAGCTCAGATG
79246544 CCACATATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
50 7 0.16
51 37 0.82
52 1 0.02
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.22
Consensus pattern (50 bp):
ACATGAATACATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGTT
Found at i:79246556 original size:51 final size:51
Alignment explanation
Indices: 79246445--79246556 Score: 149
Period size: 51 Copynumber: 2.2 Consensus size: 51
79246435 CTACCTCATA
* **
79246445 ACATGTAT-ACATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGTT
1 ACATATATCACATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGCC
*
79246495 ACATGA-ATCACATCCACT-ATGAACTCAGACCTCTCAACGAGCTCAGATGCC
1 ACAT-ATATCACATCCA-TAATGAACTCAGACCACTCAACGAGCTCAGATGCC
79246546 ACATATATCAC
1 ACATATATCAC
79246557 GAACTTGGAC
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
50 7 0.13
51 46 0.85
52 1 0.02
ACGTcount: A:0.36, C:0.29, G:0.12, T:0.22
Consensus pattern (51 bp):
ACATATATCACATCCATAATGAACTCAGACCACTCAACGAGCTCAGATGCC
Found at i:79246628 original size:43 final size:42
Alignment explanation
Indices: 79246527--79246628 Score: 114
Period size: 43 Copynumber: 2.4 Consensus size: 42
79246517 ACTCAGACCT
* * * * *
79246527 CTCAACGAGCTCAGATGCCACATATATCACGAACTTGGACCA
1 CTCAACAAGCTCGGATTCCACATATATCACGAACTCGAACCA
* * *
79246569 CTCAACAAGTTTGGATTCTCACATATATCACGAACTCGAACCG
1 CTCAACAAGCTCGGATTC-CACATATATCACGAACTCGAACCA
*
79246612 CTCAACTAGCTCGGATT
1 CTCAACAAGCTCGGATT
79246629 TCTTAATTCC
Statistics
Matches: 48, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
42 13 0.27
43 35 0.73
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (42 bp):
CTCAACAAGCTCGGATTCCACATATATCACGAACTCGAACCA
Found at i:79248726 original size:21 final size:21
Alignment explanation
Indices: 79248697--79248739 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
79248687 TACAAAAGTT
79248697 ATTTATCTAACAACAACCATTC
1 ATTTATCTAACAACAACC-TTC
* *
79248719 ATTT-TCTATCATCAACCTTC
1 ATTTATCTAACAACAACCTTC
79248739 A
1 A
79248740 AAACTCATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 11 0.58
22 4 0.21
ACGTcount: A:0.35, C:0.28, G:0.00, T:0.37
Consensus pattern (21 bp):
ATTTATCTAACAACAACCTTC
Found at i:79257203 original size:3 final size:3
Alignment explanation
Indices: 79257195--79257244 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
79257185 AATTCTTGTG
*
79257195 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
79257243 AT
1 AT
79257245 GCAATATTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:79257769 original size:48 final size:48
Alignment explanation
Indices: 79257701--79257808 Score: 144
Period size: 48 Copynumber: 2.2 Consensus size: 48
79257691 CGAGATGAGA
** *
79257701 GCCAGTGTAAGACCATGTCTAGGACATGGCATCAACGTTGATATGTCT
1 GCCAGTGTAAGAAAATGTCTAGGACATGGCATCAACATTGATATGTCT
* *** *
79257749 GCCAGTGTAAGAAAATGTCTAGGACATGGCGTTGGCATTGATATGTGT
1 GCCAGTGTAAGAAAATGTCTAGGACATGGCATCAACATTGATATGTCT
79257797 GCCAGTGTAAGA
1 GCCAGTGTAAGA
79257809 TGGGACATGG
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
GCCAGTGTAAGAAAATGTCTAGGACATGGCATCAACATTGATATGTCT
Found at i:79265754 original size:15 final size:15
Alignment explanation
Indices: 79265736--79265765 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
79265726 TTTTATTTTA
*
79265736 ATTTATTTTTGGTTT
1 ATTTATTTCTGGTTT
79265751 ATTTATTTCTGGTTT
1 ATTTATTTCTGGTTT
79265766 TTTTTTTGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.03, G:0.13, T:0.70
Consensus pattern (15 bp):
ATTTATTTCTGGTTT
Found at i:79266554 original size:177 final size:177
Alignment explanation
Indices: 79265923--79266538 Score: 826
Period size: 177 Copynumber: 3.5 Consensus size: 177
79265913 AATAGGACTG
** * *
79265923 GTGGCTTAAATCTGCTCCATTGTCGATAAATGGAGATAAGATTTGCCATCCTCGATCTGCTCCAC
1 GTGGCTTAAATCTGCTCCATTACCGATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCAC
* * * * * *
79265988 AACTGTTTAGGGAAAT-AGATCTACAATCTTCAATCTGCTTCCTTGCTACCTCAAGAAGATAAGA
66 TACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGA
* *
79266052 CTACAATCGCCAACCTCCTCTCTTGCTACTTCAGAGAGATAAGG-TT
131 CTACAATCGCCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTT
* * * * * * * *
79266098 GATGGCTAAAATCTGCTCTATTACTGAAACATAGAGATAAGACTCGCCATCTTCAATCTGCTCCA
1 G-TGGCTTAAATCTGCTCCATTACCGATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCA
* * *
79266163 C-AGCTGCTTAGGGAGATACGATCTTCAATCTTTAGTCTGCTTCCTTGCTACCTCGGGAAGATAA
65 CTA-CTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAA
* * * * * *
79266227 GACTACCATTGCCAACTTGCTCTCTTACTACCTCAGAGAGATAAGGCTG
129 GACTACAATCGCCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTT
** * * *
79266276 GTGGCTTAAATCTGCTCCATTGTCGATACATGAAGATAAGATTTACCACCTTCGATCTGCTCCAC
1 GTGGCTTAAATCTGCTCCATTACCGATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCAC
*
79266341 TACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCTTTGCTACCTCAGGAAGATAAGA
66 TACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGA
79266406 CTACAATCGCCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTT
131 CTACAATCGCCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTT
* * *
79266453 GTGGC-TAGAATCTACTCCATTACCGATACATGGAGGTAAGATTTGCCATCTTCGATCTGCACCA
1 GTGGCTTA-AATCTGCTCCATTACCGATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCA
*
79266517 CTATTGCTTAGGGAGATAAGAT
65 CTACTGCTTAGGGAGATAAGAT
79266539 GTGTAATTTT
Statistics
Matches: 376, Mismatches: 59, Indels: 10
0.84 0.13 0.02
Matches are distributed among these distances:
175 2 0.01
176 66 0.18
177 305 0.81
178 3 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (177 bp):
GTGGCTTAAATCTGCTCCATTACCGATACATGGAGATAAGATTTGCCATCTTCGATCTGCTCCAC
TACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGA
CTACAATCGCCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTT
Found at i:79266582 original size:45 final size:44
Alignment explanation
Indices: 79266526--79266631 Score: 115
Period size: 44 Copynumber: 2.4 Consensus size: 44
79266516 ACTATTGCTT
* *
79266526 AGGGAGATAAGA-TGTGTAATTTTCAGTCTACTCCACTACAACTTC
1 AGGGAGATAAGACT-TGT-ATCTTCAGCCTACTCCACTACAACTTC
* * * * *
79266571 AGGGGGATAAGACTTGTATCTTGAGCCTGCTCCACTGCTACTTC
1 AGGGAGATAAGACTTGTATCTTCAGCCTACTCCACTACAACTTC
*
79266615 AGGGAGATAAGGCTTGT
1 AGGGAGATAAGACTTGT
79266632 CACTTCAACT
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
44 36 0.71
45 14 0.27
46 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (44 bp):
AGGGAGATAAGACTTGTATCTTCAGCCTACTCCACTACAACTTC
Found at i:79266582 original size:354 final size:353
Alignment explanation
Indices: 79265920--79266584 Score: 921
Period size: 354 Copynumber: 1.9 Consensus size: 353
79265910 GGAAATAGGA
* *
79265920 CTGGTGGCTTAAATCTGCTCCATTGTCGATAAATGGAGATAAGATTTGCCATCCTCGATCTGCTC
1 CTGGTGGCTTAAATCTGCTCCATTGTCGATAAATGAAGATAAGATTTACCATCCTCGATCTGCTC
*
79265985 CACAACTGTTTAGGGAAATAGATCTACAATCTTCAATCTGCTTCCTTGCTACCTCAAGAAGATAA
66 CACAACTGCTTAGGGAAATAGATCTACAATCTTCAATCTGCTTCCTTGCTACCTCAAGAAGATAA
* * *
79266050 GACTACAATCGCCAACCTCCTCTCTTGCTACTTCAGAGAGATAAGGTTGATGGCTAAAATCTGCT
131 GACTACAATCGCCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGTTGATGGCTAAAATCTACT
* * *
79266115 CTATTACTGAAACATAGAGATAAGACTCGCCATCTTCAATCTGCTCCACAGCTGCTTAGGGAGAT
196 CCATTACCGAAACATAGAGATAAGACTCGCCATCTTCAATCTGCACCACAGCTGCTTAGGGAGAT
* * * * *
79266180 ACGATCTTCAATCTTTAGTCTGCTTCCTTGCTACCTCGGGAAGATAAGACTACCATTGCCAACTT
261 AAGATCTTCAATCTTTAGTCTACTTCCCTACAACCTCGGGAAGATAAGACTACCATTGCCAACTT
79266245 GCTCTCTTACTACCTCAGAGAGATAAGG
326 GCTCTCTTACTACCTCAGAGAGATAAGG
*
79266273 CTGGTGGCTTAAATCTGCTCCATTGTCGATACATGAAGATAAGATTTACCA-CCTTCGATCTGCT
1 CTGGTGGCTTAAATCTGCTCCATTGTCGATAAATGAAGATAAGATTTACCATCC-TCGATCTGCT
* * * * * *
79266337 CCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCTTTGCTACCTCAGGAAGAT
65 CCACAACTGCTTAGGGAAAT-AGATCTACAATCTTCAATCTGCTTCCTTGCTACCTCAAGAAGAT
*
79266402 AAGACTACAATCGCCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTTG-TGGCTAGAATCT
129 AAGACTACAATCGCCAACCTACTCTCTTGCTACCTCAGAGAGATAAGG-TTGATGGCTAAAATCT
* * * * * * *
79266466 ACTCCATTACCGATACATGGAGGTAAGATTTGCCATCTTCGATCTGCACCACTA-TTGCTTAGGG
193 ACTCCATTACCGAAACATAGAGATAAGACTCGCCATCTTCAATCTGCACCAC-AGCTGCTTAGGG
* * *
79266530 AGATAAGATGTGT-AAT-TTTCAGTCTAC-TCCACTACAACTTCAGGG-GGATAAGACT
257 AGATAAGATCT-TCAATCTTT-AGTCTACTTCC-CTACAACCTC-GGGAAGATAAGACT
79266585 TGTATCTTGA
Statistics
Matches: 272, Mismatches: 32, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
352 2 0.01
353 81 0.30
354 181 0.67
355 8 0.03
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (353 bp):
CTGGTGGCTTAAATCTGCTCCATTGTCGATAAATGAAGATAAGATTTACCATCCTCGATCTGCTC
CACAACTGCTTAGGGAAATAGATCTACAATCTTCAATCTGCTTCCTTGCTACCTCAAGAAGATAA
GACTACAATCGCCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGTTGATGGCTAAAATCTACT
CCATTACCGAAACATAGAGATAAGACTCGCCATCTTCAATCTGCACCACAGCTGCTTAGGGAGAT
AAGATCTTCAATCTTTAGTCTACTTCCCTACAACCTCGGGAAGATAAGACTACCATTGCCAACTT
GCTCTCTTACTACCTCAGAGAGATAAGG
Found at i:79266977 original size:64 final size:64
Alignment explanation
Indices: 79266875--79267066 Score: 305
Period size: 64 Copynumber: 3.0 Consensus size: 64
79266865 TTCATGTATC
*
79266875 ATGCTTATG-CGAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTC-AAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
* ** * *
79266939 ATGCTTATGTCAACTAATTAGGACACTATGATCGAAATGAATAAAATGTTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
*
79267003 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTACCTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
79267067 TTATGAATGA
Statistics
Matches: 115, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
64 114 0.99
65 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:79275608 original size:26 final size:26
Alignment explanation
Indices: 79275579--79275631 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
79275569 TCAAACATGC
79275579 ATTTAGATCAATTTAAC-CCTAGGGGT
1 ATTTAGAT-AATTTAACTCCTAGGGGT
* * *
79275605 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAGATAATTTAACTCCTAGGGGT
79275631 A
1 A
79275632 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGATAATTTAACTCCTAGGGGT
Done.