Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 235 of 373
Found at i:79982775 original size:133 final size:133
Alignment explanation
Indices: 79982551--79983327 Score: 760
Period size: 133 Copynumber: 5.8 Consensus size: 133
79982541 AATTACAAGT
** * * * * *
79982551 CTTATCTCCCTGAAAATACAGTGGAGTAGATTGAAGATAACAAATCTTATCTCTCTGAAGTTGTA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TTACAAATCTTATCTCCCTGAAGTTGCA
* * * * *
79982616 GTAGAACAGATTGAAGATAGCAAATCTTATCTCTCTAAAGTTGTAGTAGAGCAGATTAAAGCTAT
65 GTGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTAT
79982681 AAAC
130 AAAC
* * * * *
79982685 CTTATCTCCCTGAAGGTGTAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
* *
79982750 TGGAGCAGATTGAAGATAGCAAATCTCATCTCTCTAAAGTTGCAGTAGAGCAAATTAAAGCTATA
66 TGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTATA
*
79982815 AAT
131 AAC
* ** * * * *
79982818 CTTATCTCTCTGAAGTTATAGTGGAGCAGGTTGAAATTACAAGTCTTATCTCCCTGAAGATGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
* * * * *
79982883 TAGAGCAGATTGAAGATAGCAAATTTTATCTCTCTGAAGTTGCAGTGGAGTAGATTAAAGCTATA
66 TGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTATA
79982948 AAC
131 AAC
* * ** * * * *
79982951 TTTATCTCCCTAAAGTTGCAGCAGAGTAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGTAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
* * *
79983016 TGGAGCAGATTGAAGAT-GCGAATCTTATTTC-CTTGAAGTTGCAGT-GAAACAAATTAAAGCTA
66 TGGAGCAGATTGAAGATAGCAAATCTTATCTCTC-TGAAGTTGCAGTAG-AGCAAATTAAAGCT-
* *
79983078 CAAGTGAAT
128 --A-TAAAC
* * * * * * ** * *** *
79983087 CTTATCTCCTTGAAATTGTAGAGGGGCAGATTCAAGCCACAAATATTATCTTTTTGAAGTTACAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
** * * * *
79983152 TGGAGCAGATTGAAGATAGTGAATCTTATCTCCCTGAAGTTGCAG-AGGAGTAAATTCAAGCCA-
66 TGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTA-GAGCAAATTAAAGCTAT
79983215 AAA-
130 AAAC
* * * * *
79983218 CTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGATACAAATCTCATCTCCTTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
* * * *
79983283 CGGAGCAGATTGAAGCTA-CAAGTCTTATCTC-CTTGAAATTGCAGT
66 TGGAGCAGATTGAAGATAGCAAATCTTATCTCTC-TGAAGTTGCAGT
79983328 GGAGTAGATC
Statistics
Matches: 532, Mismatches: 99, Indels: 27
0.81 0.15 0.04
Matches are distributed among these distances:
129 1 0.00
130 20 0.04
131 68 0.13
132 36 0.07
133 275 0.52
134 31 0.06
135 1 0.00
136 65 0.12
137 33 0.06
138 2 0.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (133 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTGCAG
TGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAAATTAAAGCTATA
AAC
Found at i:79983342 original size:44 final size:44
Alignment explanation
Indices: 79982514--79983347 Score: 597
Period size: 44 Copynumber: 18.8 Consensus size: 44
79982504 AATCCCGCAC
* * ** *
79982514 CCTTGAAGTTGCAGTGGAGTAGGTTGAAATTACAAGTCTTATCT
1 CCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
* ** * * *
79982558 CCCTGAAAATACAGTGGAGTAGATTGAAGATAACAAATCTTATCT
1 CCTTGAAGTTGCAGTGGAGCAGATTGAAGCT-ACAAATCTTATCT
* * * *
79982603 -CTCTGAAGTTGTAGTAGAACAGATTGAAGATAGCAAATCTTATCT
1 CCT-TGAAGTTGCAGTGGAGCAGATTGAAGCTA-CAAATCTTATCT
* * * * * *
79982648 -CTCTAAAGTTGTAGTAGAGCAGATTAAAGCTATAAACCTTATCT
1 CCT-TGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
* * * * * *
79982692 CCCTGAAGGTGTAGTGGAGCAGGTTGAAGTTACAAGTCTTATCT
1 CCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
* * * *
79982736 CCCTAAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTCATCT
1 CCTTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CAAATCTTATCT
* * * * *
79982781 -CTCTAAAGTTGCAGTAGAGCAAATTAAAGCTATAAATCTTATCT
1 CCT-TGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
** * ** *
79982825 -CTCTGAAGTTATAGTGGAGCAGGTTGAAATTACAAGTCTTATCT
1 CCT-TGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
* * * * *
79982869 CCCTGAAGATGCAGTAGAGCAGATTGAAGATAGCAAATTTTATCT
1 CCTTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CAAATCTTATCT
* * *
79982914 -CTCTGAAGTTGCAGTGGAGTAGATTAAAGCTATAAA-CTTTATCT
1 CCT-TGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATC-TTATCT
* * ** * * * *
79982958 CCCTAAAGTTGCAGCAGAGTAGGTTGAAGTTACAAGTCTTATCT
1 CCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
* * * * * *
79983002 CCCTGAAGTTGTAGTGGAGCAGATTGAAGATGCGAATCTTATTT
1 CCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
* * * *
79983046 CCTTGAAGTTGCAGTGAAACAAATTAAAGCTACAAGTGAATCTTATCT
1 CCTTGAAGTTGCAGTGGAGCAGATTGAAGCTAC-A---AATCTTATCT
* * * * * * *
79983094 CCTTGAAATTGTAGAGGGGCAGATTCAAGCCACAAATATTATCT
1 CCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
** * * **
79983138 TTTTGAAGTTACAGTGGAGCAGATTGAAGATAGTGAATCTTATCT
1 CCTTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CAAATCTTATCT
* * * * * *
79983183 CCCTGAAGTTGCAGAGGAGTAAATTCAAGC--CAAAACTTATCTT
1 CCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATC-T
* * *
79983226 CC-TGAAGTTGCAGTGGAGTAGATTGAAGATACAAATCTCATCT
1 CCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
* *
79983269 CCTTGAAGTTGCAGCGGAGCAGATTGAAGCTACAAGTCTTATCT
1 CCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
* * * *
79983313 CCTTGAAATTGCAGTGGAGTAGATCGAAGCAACAA
1 CCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAA
79983348 TTTCTACACC
Statistics
Matches: 613, Mismatches: 156, Indels: 42
0.76 0.19 0.05
Matches are distributed among these distances:
42 31 0.05
43 6 0.01
44 366 0.60
45 176 0.29
47 1 0.00
48 33 0.05
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (44 bp):
CCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
Found at i:79984746 original size:15 final size:16
Alignment explanation
Indices: 79984707--79984748 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
79984697 TTTACCTATT
*
79984707 TTTTATTTTAAATTTAG
1 TTTTA-TTTATATTTAG
*
79984724 TATTATTTATATTT-G
1 TTTTATTTATATTTAG
79984739 TTTTATTTAT
1 TTTTATTTAT
79984749 TTATTTATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 10 0.45
16 8 0.36
17 4 0.18
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (16 bp):
TTTTATTTATATTTAG
Found at i:79984757 original size:65 final size:69
Alignment explanation
Indices: 79984680--79984846 Score: 202
Period size: 65 Copynumber: 2.5 Consensus size: 69
79984670 TTTATCTTAC
** ** * *
79984680 TTATTTATTTATTATTCTTT-ACCTATTTTTTAT-TTTAAATTTAGTATTATTTATATTTG-T-T
1 TTATTTATTTATTATTCTTTCA-CT-TTTTAAATACCTAAAATTAATATTATTTATATTTGTTAT
79984741 -T-TAT
64 ATCTAT
79984745 TTATTTATTTATTATTCTTTCACTTTTTAAATACCTAAAATTAATATTATTTATATTTGTTATAT
1 TTATTTATTTATTATTCTTTCACTTTTTAAATACCTAAAATTAATATTATTTATATTTGTTATAT
79984810 CTAT
66 CTAT
* *
79984814 ATATTTATTTATTATTCTTTTACTTTTTAAATA
1 TTATTTATTTATTATTCTTTCACTTTTTAAATA
79984847 TTTAAGTTTT
Statistics
Matches: 88, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
64 6 0.07
65 44 0.50
66 2 0.02
67 1 0.01
68 1 0.01
69 34 0.39
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.63
Consensus pattern (69 bp):
TTATTTATTTATTATTCTTTCACTTTTTAAATACCTAAAATTAATATTATTTATATTTGTTATAT
CTAT
Found at i:79984861 original size:69 final size:64
Alignment explanation
Indices: 79984681--79984868 Score: 200
Period size: 69 Copynumber: 2.8 Consensus size: 64
79984671 TTATCTTACT
**
79984681 TATTTATTTATTATTC-TTTACCTATTTTTTAT-TTTAAATTTAGTATTATTTATATTTGTTTTA
1 TATTTATTTATTATTCTTTTA-CT-TTTTAAATATTTAAATTTA-TATTATTTATATTTGTTTTA
*
79984744 TT
63 TA
* * * *
79984746 TATTTATTTATTATTCTTTCACTTTTTAAATACCTAAAATTAATATTATTTATATTTGTTATATC
1 TATTTATTTATTATTCTTTTACTTTTTAAATA-TTTAAATTTATATTATTTATATTTG-T-T-T-
79984811 TATA
61 TATA
* *
79984815 TATTTATTTATTATTCTTTTACTTTTTAAATATTTAAGTTTTATATTACTTATA
1 TATTTATTTATTATTCTTTTACTTTTTAAATATTTAA-ATTTATATTATTTATA
79984869 CTTCCTTTTC
Statistics
Matches: 102, Mismatches: 13, Indels: 12
0.80 0.10 0.09
Matches are distributed among these distances:
64 6 0.06
65 33 0.32
66 11 0.11
67 1 0.01
68 4 0.04
69 47 0.46
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.62
Consensus pattern (64 bp):
TATTTATTTATTATTCTTTTACTTTTTAAATATTTAAATTTATATTATTTATATTTGTTTTATA
Found at i:79990934 original size:258 final size:258
Alignment explanation
Indices: 79990477--79990990 Score: 1010
Period size: 258 Copynumber: 2.0 Consensus size: 258
79990467 TTGAAACCAC
79990477 GTGTATAACACATTATTGTCTTCTAGGGAAATTTGTGCCTGTATAATCCTATTTTGCGTAGATAG
1 GTGTATAACACATTATTGTCTTCTAGGGAAATTTGTGCCTGTATAATCCTATTTTGCGTAGATAG
79990542 CAGTGACCCTCCTTTCTTTGAATCTTTCTTGTGCTCAAAGATGGCATGCTGTGCTTCCTTTTTCT
66 CAGTGACCCTCCTTTCTTTGAATCTTTCTTGTGCTCAAAGATGGCATGCTGTGCTTCCTTTTTCT
79990607 CTAATGCAATGATGCAAAGTGGCCGGATTAATTGTTTCCCATGATGTATGTTCCTTTTAAGTTGA
131 CTAATGCAATGATGCAAAGTGGCCGGATTAATTGTTTCCCATGATGTATGTTCCTTTTAAGTTGA
79990672 TTTACGAGTGATGTTAGGGTAATGTTTGTGTAGCTTCATTTCTGCATGTCCTATATACTCCAA
196 TTTACGAGTGATGTTAGGGTAATGTTTGTGTAGCTTCATTTCTGCATGTCCTATATACTCCAA
79990735 GTGTATAACACATTATTGTCTTCTAGGGAAATTTGTGCCTGTATAATCCTATTTTGCGTAGATAG
1 GTGTATAACACATTATTGTCTTCTAGGGAAATTTGTGCCTGTATAATCCTATTTTGCGTAGATAG
79990800 CAGTGACCCTCCTTTCTTTGAATCTTTCTTGTGCTCAAAGATGGCATGCTGTGCTTCCTTTTTCT
66 CAGTGACCCTCCTTTCTTTGAATCTTTCTTGTGCTCAAAGATGGCATGCTGTGCTTCCTTTTTCT
*
79990865 CTAATGCAATGATGCAAAGTGGCCGGATTAATTGTTTCCTATGATGTATGTTCCTTTTAAGTTGA
131 CTAATGCAATGATGCAAAGTGGCCGGATTAATTGTTTCCCATGATGTATGTTCCTTTTAAGTTGA
*
79990930 TTTACGTGTGATGTTAGGGTAATGTTTGTGTAGCTTCATTTCTGCATGTCCTATATACTCC
196 TTTACGAGTGATGTTAGGGTAATGTTTGTGTAGCTTCATTTCTGCATGTCCTATATACTCC
79990991 CAAGCATTTC
Statistics
Matches: 254, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
258 254 1.00
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.41
Consensus pattern (258 bp):
GTGTATAACACATTATTGTCTTCTAGGGAAATTTGTGCCTGTATAATCCTATTTTGCGTAGATAG
CAGTGACCCTCCTTTCTTTGAATCTTTCTTGTGCTCAAAGATGGCATGCTGTGCTTCCTTTTTCT
CTAATGCAATGATGCAAAGTGGCCGGATTAATTGTTTCCCATGATGTATGTTCCTTTTAAGTTGA
TTTACGAGTGATGTTAGGGTAATGTTTGTGTAGCTTCATTTCTGCATGTCCTATATACTCCAA
Found at i:79995804 original size:23 final size:23
Alignment explanation
Indices: 79995749--79995807 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
79995739 AATTTTTTAT
*
79995749 ATAAAATAAATTTAAAAAATATA
1 ATAAAATAAATATAAAAAATATA
* *
79995772 ATATATTAAATATAATAAAA-ATA
1 ATAAAATAAATATAA-AAAATATA
*
79995795 TTAAAATAAATAT
1 ATAAAATAAATAT
79995808 TTTTTAAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
23 25 0.86
24 4 0.14
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (23 bp):
ATAAAATAAATATAAAAAATATA
Found at i:79995838 original size:18 final size:17
Alignment explanation
Indices: 79995771--79995837 Score: 55
Period size: 18 Copynumber: 3.8 Consensus size: 17
79995761 TAAAAAATAT
*
79995771 AATATATTAAATATAATA
1 AATATATTAAAAATAA-A
*
79995789 AAAATATT-AAAATAAA
1 AATATATTAAAAATAAA
* * *
79995805 TATTTTTTAAAAAATTAAA
1 AATATATT-AAAAA-TAAA
79995824 AATATATTAAAAAT
1 AATATATTAAAAAT
79995838 TTTATTTATA
Statistics
Matches: 37, Mismatches: 9, Indels: 7
0.70 0.17 0.13
Matches are distributed among these distances:
16 5 0.14
17 7 0.19
18 16 0.43
19 9 0.24
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
AATATATTAAAAATAAA
Found at i:79995934 original size:61 final size:62
Alignment explanation
Indices: 79995815--79995939 Score: 162
Period size: 61 Copynumber: 2.0 Consensus size: 62
79995805 TATTTTTTAA
* *** * *
79995815 AAAATTAAAAATATATTAAAAATTTTATTTATACTTACATAACACTAAAATAGTTATAATTT
1 AAAATTAAAAACATATTAAAAAAACTATTTATACTTAAATAACACTAAAATAGTTATAACTT
* * *
79995877 AAAATTAAAAACATATTAAAAAAACT-TTTATATTTAAATAAGACTAAGATAGTTATAACTT
1 AAAATTAAAAACATATTAAAAAAACTATTTATACTTAAATAACACTAAAATAGTTATAACTT
79995938 AA
1 AA
79995940 CAAACAAATA
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
61 32 0.59
62 22 0.41
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.37
Consensus pattern (62 bp):
AAAATTAAAAACATATTAAAAAAACTATTTATACTTAAATAACACTAAAATAGTTATAACTT
Found at i:79995968 original size:11 final size:11
Alignment explanation
Indices: 79995954--79996041 Score: 68
Period size: 11 Copynumber: 7.9 Consensus size: 11
79995944 CAAATATCTC
*
79995954 TAAAATAATAT
1 TAAAATAATAA
79995965 TAAAATTAATAA
1 TAAAA-TAATAA
*
79995977 TAAAATAAAAA
1 TAAAATAATAA
* ** *
79995988 TTATTTAATAT
1 TAAAATAATAA
*
79995999 TTAAATAATAA
1 TAAAATAATAA
* *
79996010 TAATATAGTAA
1 TAAAATAATAA
*
79996021 TAATATAATAA
1 TAAAATAATAA
*
79996032 AAAAATAATA
1 TAAAATAATA
79996042 GCAAAACAAT
Statistics
Matches: 60, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
11 50 0.83
12 10 0.17
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (11 bp):
TAAAATAATAA
Found at i:79996030 original size:33 final size:34
Alignment explanation
Indices: 79995958--79996030 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 34
79995948 TATCTCTAAA
*
79995958 ATAATATTAAAATTAATAATAAAATAAAAATTAT
1 ATAATATTAAAATTAATAATAAAATAAAAATAAT
* * * **
79995992 TTAATATTTAAA-TAATAATAATATAGTAATAAT
1 ATAATATTAAAATTAATAATAAAATAAAAATAAT
79996025 ATAATA
1 ATAATA
79996031 AAAAAATAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
33 22 0.69
34 10 0.31
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (34 bp):
ATAATATTAAAATTAATAATAAAATAAAAATAAT
Found at i:79996127 original size:6 final size:6
Alignment explanation
Indices: 79996116--79996176 Score: 68
Period size: 6 Copynumber: 10.2 Consensus size: 6
79996106 AAATAAGTTG
* * ** *
79996116 GCCCAT GCCCAT GCCCAT GTCCAT ACCCAT GCCCAT GTACAT GCACAT
1 GCCCAT GCCCAT GCCCAT GCCCAT GCCCAT GCCCAT GCCCAT GCCCAT
*
79996164 GCCCAT GCACAT G
1 GCCCAT GCCCAT G
79996177 ACATTGACTC
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.23, C:0.41, G:0.16, T:0.20
Consensus pattern (6 bp):
GCCCAT
Found at i:79996144 original size:18 final size:18
Alignment explanation
Indices: 79996118--79996170 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
79996108 ATAAGTTGGC
79996118 CCATGCCCATGCCCATGT
1 CCATGCCCATGCCCATGT
*
79996136 CCATACCCATGCCCATGT
1 CCATGCCCATGCCCATGT
* *
79996154 ACATGCACATGCCCATG
1 CCATGCCCATGCCCATG
79996171 CACATGACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.23, C:0.42, G:0.15, T:0.21
Consensus pattern (18 bp):
CCATGCCCATGCCCATGT
Found at i:79998961 original size:46 final size:46
Alignment explanation
Indices: 79998860--79999180 Score: 444
Period size: 46 Copynumber: 7.0 Consensus size: 46
79998850 TTTGACATGA
* * * * * *
79998860 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGC
** * *
79998907 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*** ** * *
79998953 TGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
79998999 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
* *
79999045 TGCCATGGTATCTTTCAACCATAGTCTTACACGTTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
79999091 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
79999137 TGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
79999181 AGAGCACACT
Statistics
Matches: 251, Mismatches: 23, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
46 222 0.88
47 29 0.12
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
Found at i:80001353 original size:18 final size:20
Alignment explanation
Indices: 80001338--80001374 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
80001328 TAATAATAAA
*
80001338 ATATCTCATTAAAATAATAT
1 ATATCTAATTAAAATAATAT
80001358 ATATCTAATT-AAATAAT
1 ATATCTAATTAAAATAAT
80001375 CATAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATCTAATTAAAATAATAT
Found at i:80002897 original size:7 final size:7
Alignment explanation
Indices: 80002886--80002925 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
80002876 TACAAATCTT
*
80002886 TTCAACT
1 TTCAACC
80002893 TTCAACC
1 TTCAACC
80002900 TTCAACC
1 TTCAACC
80002907 TTCAACC
1 TTCAACC
*
80002914 TTCATCC
1 TTCAACC
80002921 TTCAA
1 TTCAA
80002926 AACAAGAGCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.28, C:0.38, G:0.00, T:0.35
Consensus pattern (7 bp):
TTCAACC
Found at i:80003419 original size:24 final size:23
Alignment explanation
Indices: 80003373--80003420 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
80003363 CGTACTCCTC
*
80003373 TTTATATTTATTATTTTTAATAT
1 TTTATATTTATTATGTTTAATAT
80003396 TTTATATTTAATTATGGTTT-ATAT
1 TTTATATTT-ATTAT-GTTTAATAT
80003420 T
1 T
80003421 CACATCTATC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 9 0.41
24 10 0.45
25 3 0.14
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (23 bp):
TTTATATTTATTATGTTTAATAT
Found at i:80007383 original size:50 final size:50
Alignment explanation
Indices: 80007308--80007448 Score: 180
Period size: 50 Copynumber: 2.9 Consensus size: 50
80007298 CCGTGTGTAA
*
80007308 TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATC
1 TGAGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATATC
* *
80007358 TGAGATCCCATATAGGACCATGTCTGGGACATGGCATTGGCATCGGTA--
1 TGAGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATATC
* * * * * *
80007406 TGTGATCCCATGTAAGACCATATCGGGGA-TTGGCCTTGGCATC
1 TGAGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATC
80007449 TTATTATGTG
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
47 12 0.15
48 24 0.30
50 45 0.56
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (50 bp):
TGAGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATATC
Found at i:80010873 original size:22 final size:22
Alignment explanation
Indices: 80010845--80010967 Score: 67
Period size: 22 Copynumber: 5.3 Consensus size: 22
80010835 TCATGCAAAT
80010845 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
80010867 ATGTGATGAATG-TGAACAT-G-CA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
80010889 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
* * *
80010914 ATGTGATGAATG-TGAACAT-GCAAA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
80010938 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
80010961 ATGTGAT
1 ATGTGAT
80010968 GAATGTGAAC
Statistics
Matches: 75, Mismatches: 10, Indels: 32
0.64 0.09 0.27
Matches are distributed among these distances:
22 24 0.32
23 17 0.23
24 17 0.23
25 17 0.23
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.24
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:80011047 original size:141 final size:141
Alignment explanation
Indices: 80010777--80011057 Score: 404
Period size: 141 Copynumber: 2.0 Consensus size: 141
80010767 GATTCTATGA
* * * *
80010777 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGGCAATGTGATGAATGTGATCATGCA
1 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
* * * *
80010842 AATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
66 AATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCATATATGTGAGAAGGCCGA
80010907 ATGGCCAATGT
131 ATGGCCAATGT
80010918 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
* * * * *
80010983 TATATGTGATAAGGTAGAATGGCCAATGTGATGAACGTGGAA-GTGTATATATGTGGCGAA-GCC
66 AATATGTGATAAGGCAGAATGGCCAATGTGATGAACGT-GAACATGCATATATGT-GAGAAGGCC
*
80011046 GAATGGCTAATG
129 GAATGGCCAATG
80011058 CGAAATGTGT
Statistics
Matches: 124, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
141 118 0.95
142 6 0.05
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.25
Consensus pattern (141 bp):
GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
AATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCATATATGTGAGAAGGCCGA
ATGGCCAATGT
Found at i:80011052 original size:47 final size:47
Alignment explanation
Indices: 80010777--80011017 Score: 410
Period size: 47 Copynumber: 5.1 Consensus size: 47
80010767 GATTCTATGA
* *
80010777 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGGCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
80010824 GATGAATGTGATCATGCAAATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
80010871 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
80010918 GATGAATGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
**
80010965 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
80011012 GATGAA
1 GATGAA
80011018 CGTGGAAGTG
Statistics
Matches: 182, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 182 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.25
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:80016578 original size:55 final size:55
Alignment explanation
Indices: 80016494--80016608 Score: 230
Period size: 55 Copynumber: 2.1 Consensus size: 55
80016484 TAATGTAATT
80016494 ACACTTTATTAGTCAAACACATTTTAGAGAATTAAAATTCTTTCTTATTACGAGA
1 ACACTTTATTAGTCAAACACATTTTAGAGAATTAAAATTCTTTCTTATTACGAGA
80016549 ACACTTTATTAGTCAAACACATTTTAGAGAATTAAAATTCTTTCTTATTACGAGA
1 ACACTTTATTAGTCAAACACATTTTAGAGAATTAAAATTCTTTCTTATTACGAGA
80016604 ACACT
1 ACACT
80016609 ATCCTAGTAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 60 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (55 bp):
ACACTTTATTAGTCAAACACATTTTAGAGAATTAAAATTCTTTCTTATTACGAGA
Found at i:80016788 original size:8 final size:7
Alignment explanation
Indices: 80016767--80016796 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
80016757 TTTAAATTTC
80016767 ATAAAAA
1 ATAAAAA
80016774 ATAAAAA
1 ATAAAAA
80016781 ATAGAAAA
1 ATA-AAAA
80016789 ATAAAAA
1 ATAAAAA
80016796 A
1 A
80016797 ATAATAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.13
Consensus pattern (7 bp):
ATAAAAA
Found at i:80016805 original size:16 final size:14
Alignment explanation
Indices: 80016767--80016796 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
80016757 TTTAAATTTC
80016767 ATAAAAAATAAAAA
1 ATAAAAAATAAAAA
80016781 ATAGAAAAATAAAAA
1 ATA-AAAAATAAAAA
80016796 A
1 A
80016797 ATAATAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 3 0.20
15 12 0.80
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.13
Consensus pattern (14 bp):
ATAAAAAATAAAAA
Found at i:80017282 original size:15 final size:15
Alignment explanation
Indices: 80017258--80017291 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
80017248 TAAGAGTAGA
*
80017258 AGAGATGCATTTAAG
1 AGAGAAGCATTTAAG
*
80017273 AGAGAAGCATTTAAT
1 AGAGAAGCATTTAAG
80017288 AGAG
1 AGAG
80017292 CTCATCACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.06, G:0.26, T:0.24
Consensus pattern (15 bp):
AGAGAAGCATTTAAG
Found at i:80017728 original size:24 final size:24
Alignment explanation
Indices: 80017694--80017755 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 24
80017684 TCACAAATTT
* * **
80017694 CACTATCACTATCATCATAGTTTG
1 CACTATTACTATCATCATAGCTCA
80017718 CACTATTACTATCATCATAGCTCA
1 CACTATTACTATCATCATAGCTCA
80017742 CACTATTACTATCA
1 CACTATTACTATCA
80017756 AATTCTTTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.35
Consensus pattern (24 bp):
CACTATTACTATCATCATAGCTCA
Found at i:80019407 original size:45 final size:42
Alignment explanation
Indices: 80019356--80019525 Score: 132
Period size: 45 Copynumber: 4.0 Consensus size: 42
80019346 AGGATTTTCG
*
80019356 ATATGTGTTCTCGTGTAAGACCACGTCTGGGACGTTGGCATCAAT
1 ATATGTGTT-TCATGTAAGACCACGTCTGGGACGTTGGCATC--T
* * * *
80019401 ATATGTGGTTACATGTAAGACCATGTTTGGGACATTGGCATCGT
1 ATATGT-GTTTCATGTAAGACCACGTCTGGGACGTTGGCATC-T
* * * * *
80019445 ATTTGAG-TT-GTGTAAGACC-CTGTCTGGGGCAG-TGGCATCG
1 ATATGTGTTTCATGTAAGACCAC-GTCTGGGAC-GTTGGCATCT
**
80019485 ATATGTGATAGCATGTAAGACCACGTCTGGGACGTTGGCAT
1 ATATGTG-TTTCATGTAAGACCACGTCTGGGACGTTGGCAT
80019526 TGTATGATAT
Statistics
Matches: 96, Mismatches: 21, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
40 5 0.05
41 23 0.24
42 2 0.02
43 24 0.25
44 6 0.06
45 33 0.34
46 3 0.03
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (42 bp):
ATATGTGTTTCATGTAAGACCACGTCTGGGACGTTGGCATCT
Found at i:80019505 original size:43 final size:43
Alignment explanation
Indices: 80019412--80019531 Score: 115
Period size: 41 Copynumber: 2.8 Consensus size: 43
80019402 TATGTGGTTA
* * * * *
80019412 CATGTAAGACCATGTTTGGGACATTGGCATCGTATTTGAGTTG
1 CATGTAAGACCCTGTCTGGGACAGTGGCATCGTATGTGAGTAG
*
80019455 --TGTAAGACCCTGTCTGGGGCAGTGGCATCGATATGTGA-TAG
1 CATGTAAGACCCTGTCTGGGACAGTGGCATCG-TATGTGAGTAG
*
80019496 CATGTAAGACCAC-GTCTGGGAC-GTTGGCATTGTATG
1 CATGTAAGACC-CTGTCTGGGACAG-TGGCATCGTATG
80019532 ATATGTGTGA
Statistics
Matches: 64, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
41 28 0.44
42 11 0.17
43 24 0.38
44 1 0.02
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.30
Consensus pattern (43 bp):
CATGTAAGACCCTGTCTGGGACAGTGGCATCGTATGTGAGTAG
Found at i:80024497 original size:20 final size:20
Alignment explanation
Indices: 80024474--80024579 Score: 88
Period size: 20 Copynumber: 5.3 Consensus size: 20
80024464 CACTTATGTG
80024474 CCCCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTTGGTA
** * *
80024494 CCCCTAATTGCACTTAT-GTG
1 CCCCTGTTTGTACTT-TGGTA
80024514 CCCCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTTGGTA
* * * ** *
80024534 CCCTTGATTGCACTTACGTG
1 CCCCTGTTTGTACTTTGGTA
* *
80024554 CCCTTTTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTTGGTA
80024574 CCCCTG
1 CCCCTG
80024580 ATTGCACTTA
Statistics
Matches: 62, Mismatches: 22, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
19 1 0.02
20 60 0.97
21 1 0.02
ACGTcount: A:0.12, C:0.28, G:0.18, T:0.42
Consensus pattern (20 bp):
CCCCTGTTTGTACTTTGGTA
Found at i:80024515 original size:40 final size:40
Alignment explanation
Indices: 80024458--80024693 Score: 285
Period size: 40 Copynumber: 5.9 Consensus size: 40
80024448 AATTATTGAA
* *
80024458 TGATTGCACTTATGTGCCCCTGTTTGTACTTTGGTACCCC
1 TGATTGCACTTACGTGCCCCTATTTGTACTTTGGTACCCC
* * * *
80024498 TAATTGCACTTATGTGCCCCTGTTTGTACTTTGGTACCCT
1 TGATTGCACTTACGTGCCCCTATTTGTACTTTGGTACCCC
* *
80024538 TGATTGCACTTACGTGCCCTTTTTTGTACTTTGGTACCCC
1 TGATTGCACTTACGTGCCCCTATTTGTACTTTGGTACCCC
* * * *
80024578 TGATTGCACTTACGTGTCCCTATTTGTACTTCGGCACTCC
1 TGATTGCACTTACGTGCCCCTATTTGTACTTTGGTACCCC
* * *
80024618 TGATTGCACTTATGTGCCCATATTTGTACTTCGGTACCCC
1 TGATTGCACTTACGTGCCCCTATTTGTACTTTGGTACCCC
* * * *
80024658 T-AGTTGCACTTCCGTGCCCCTAGTTATACTTCGGTA
1 TGA-TTGCACTTACGTGCCCCTATTTGTACTTTGGTA
80024694 ACTCTACATC
Statistics
Matches: 172, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
39 1 0.01
40 171 0.99
ACGTcount: A:0.15, C:0.28, G:0.18, T:0.39
Consensus pattern (40 bp):
TGATTGCACTTACGTGCCCCTATTTGTACTTTGGTACCCC
Found at i:80024677 original size:20 final size:20
Alignment explanation
Indices: 80024621--80024682 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 20
80024611 GCACTCCTGA
** * *
80024621 TTGCACTTATGTGCCCATAT
1 TTGCACTTCCGTGCCCCTAG
* * *
80024641 TTGTACTTCGGTACCCCTAG
1 TTGCACTTCCGTGCCCCTAG
80024661 TTGCACTTCCGTGCCCCTAG
1 TTGCACTTCCGTGCCCCTAG
80024681 TT
1 TT
80024683 ATACTTCGGT
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.15, C:0.31, G:0.18, T:0.37
Consensus pattern (20 bp):
TTGCACTTCCGTGCCCCTAG
Found at i:80024688 original size:20 final size:20
Alignment explanation
Indices: 80024644--80024689 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
80024634 CCCATATTTG
* *
80024644 TACTTCGGTACCCCTAGTTG
1 TACTTCCGTACCCCTAGTTA
* *
80024664 CACTTCCGTGCCCCTAGTTA
1 TACTTCCGTACCCCTAGTTA
80024684 TACTTC
1 TACTTC
80024690 GGTAACTCTA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.35, G:0.15, T:0.35
Consensus pattern (20 bp):
TACTTCCGTACCCCTAGTTA
Found at i:80025114 original size:17 final size:17
Alignment explanation
Indices: 80025094--80025126 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
80025084 TATATTATGG
80025094 ATGATCTTATATGTAAC
1 ATGATCTTATATGTAAC
*
80025111 ATGATGTTATATGTAA
1 ATGATCTTATATGTAA
80025127 AAAGAGATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.42
Consensus pattern (17 bp):
ATGATCTTATATGTAAC
Found at i:80025580 original size:17 final size:16
Alignment explanation
Indices: 80025560--80025591 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
80025550 TTACAGATTA
80025560 TTGGAAGCTCGATCGGT
1 TTGGAAGCTC-ATCGGT
80025577 TTGGAAGCTCATCGG
1 TTGGAAGCTCATCGG
80025592 AGATCTATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.19, C:0.19, G:0.34, T:0.28
Consensus pattern (16 bp):
TTGGAAGCTCATCGGT
Found at i:80031492 original size:38 final size:39
Alignment explanation
Indices: 80031392--80031553 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
80031382 GGACTTTAGC
* * * *
80031392 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* * *
80031431 CCGGATATAATTCTATCAAATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
80031470 CCCGA-ATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
80031508 CCGGATATAATTCCAGCACATAGCCTGCTGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
80031547 CCGGATA
1 CCGGATA
80031554 CACATCAAAT
Statistics
Matches: 109, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
38 34 0.31
39 75 0.69
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:80031499 original size:77 final size:77
Alignment explanation
Indices: 80031402--80031548 Score: 240
Period size: 77 Copynumber: 1.9 Consensus size: 77
80031392 CCGGACATAT
* * * *
80031402 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGATATAATTCTATCAAATAGCCTGCGGACCCTA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCAAATAGCCTGCGGACCCTA
80031467 AGTCCCGAATAA
66 AGTCCCGAATAA
* *
80031479 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCTGACCCTA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCAAATAGCCTGCGGACCCTA
80031544 AGTCC
66 AGTCC
80031549 GGATACACAT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
77 64 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.22
Consensus pattern (77 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCAAATAGCCTGCGGACCCTA
AGTCCCGAATAA
Found at i:80038593 original size:39 final size:39
Alignment explanation
Indices: 80038510--80038603 Score: 102
Period size: 39 Copynumber: 2.4 Consensus size: 39
80038500 TGAAACCAAT
*
80038510 TACCAGCAC-AAGCCTGTGGGAATTTAAACCCGGTATAA
1 TACCAGCACGAAGCCTGTGGGAATTTAAACCCGGCATAA
* * * *
80038548 TACCAGCTCGAAGCCTGTGGGACTTT-AGCCCGGACATAT
1 TACCAGCACGAAGCCTGTGGGAATTTAAACCCGG-CATAA
* *
80038587 TTCCAGCACGTAGCCTG
1 TACCAGCACGAAGCCTG
80038604 CGGACCTTAA
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
38 14 0.30
39 32 0.70
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (39 bp):
TACCAGCACGAAGCCTGTGGGAATTTAAACCCGGCATAA
Found at i:80038620 original size:39 final size:39
Alignment explanation
Indices: 80038577--80038739 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
80038567 GGACTTTAGC
* * * *
80038577 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
80038616 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* * *
80038655 CCCGATATAATTCCAGTACATAGCTTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
80038694 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
80038733 CCGGATA
1 CCGGATA
80038740 CACATCAAAT
Statistics
Matches: 114, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 114 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:80046284 original size:42 final size:42
Alignment explanation
Indices: 80046234--80046385 Score: 137
Period size: 42 Copynumber: 3.6 Consensus size: 42
80046224 GAGTTTATGT
*
80046234 GTAAGACCATATCTGGGATATGACATCGTTATGAGATTTCCA
1 GTAAGACCATATCTGGGATATGACATCGATATGAGATTTCCA
* * * * * * * **
80046276 GTAGGACCATGTTTGGGACATGGCATTGATATGAGAATT-GT
1 GTAAGACCATATCTGGGATATGACATCGATATGAGATTTCCA
* * * *
80046317 GTAAGACCATAGCTGGGCTATTGGCATCGATATGAG-TTCCCA
1 GTAAGACCATATCTGGGATA-TGACATCGATATGAGATTTCCA
*
80046359 TGTAAGACCATATCTGAGATATGACAT
1 -GTAAGACCATATCTGGGATATGACAT
80046386 TGGTATGATT
Statistics
Matches: 82, Mismatches: 25, Indels: 6
0.73 0.22 0.05
Matches are distributed among these distances:
41 15 0.18
42 50 0.61
43 17 0.21
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
GTAAGACCATATCTGGGATATGACATCGATATGAGATTTCCA
Found at i:80046387 original size:84 final size:83
Alignment explanation
Indices: 80046231--80046393 Score: 193
Period size: 84 Copynumber: 2.0 Consensus size: 83
80046221 TATGAGTTTA
* * * * * * *
80046231 TGTGTAAGACCATATCTGGGATATGACATCGTTATGAGATTTCCAGTAGGACCATGTTTGGGACA
1 TGTGTAAGACCATAGCTGGGATATGACATCGATATGAGATTCCCAGTAAGACCATATCTGAGACA
*
80046296 TGGCATTGATATGAGAAT
66 TGACATTGATATGAGAAT
* *
80046314 TGTGTAAGACCATAGCTGGGCTATTGGCATCGATATGAG-TTCCCATGTAAGACCATATCTGAGA
1 TGTGTAAGACCATAGCTGGGATA-TGACATCGATATGAGATTCCCA-GTAAGACCATATCTGAGA
* *
80046378 TATGACATTGGTATGA
64 CATGACATTGATATGA
80046394 TTCTATGTGT
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
83 26 0.39
84 40 0.61
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.31
Consensus pattern (83 bp):
TGTGTAAGACCATAGCTGGGATATGACATCGATATGAGATTCCCAGTAAGACCATATCTGAGACA
TGACATTGATATGAGAAT
Found at i:80049392 original size:17 final size:17
Alignment explanation
Indices: 80049350--80049408 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
80049340 CTTAAATTTC
* *
80049350 ATAA-AAATTCAAAAAA
1 ATAATAAATACAAATAA
*
80049366 ATAGAAAAATAACAAA-AA
1 ATA-ATAAAT-ACAAATAA
*
80049384 GTAATAAATACAAATAA
1 ATAATAAATACAAATAA
80049401 ATAATAAA
1 ATAATAAA
80049409 AGGAACATGA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
16 8 0.23
17 15 0.43
18 8 0.23
19 4 0.11
ACGTcount: A:0.73, C:0.05, G:0.03, T:0.19
Consensus pattern (17 bp):
ATAATAAATACAAATAA
Found at i:80051361 original size:17 final size:17
Alignment explanation
Indices: 80051319--80051367 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 17
80051309 TAAAACTCTT
80051319 AAATAACTTAAAATATTA
1 AAATAA-TTAAAATATTA
80051337 ATAATAATTAAAA-ATTCA
1 A-AATAATTAAAATATT-A
80051355 AAATAA-TAAAATA
1 AAATAATTAAAATA
80051368 ATAAGATCTG
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
16 5 0.18
17 9 0.32
18 9 0.32
19 5 0.18
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (17 bp):
AAATAATTAAAATATTA
Found at i:80055104 original size:13 final size:13
Alignment explanation
Indices: 80055086--80055118 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
80055076 GGCTCACATG
80055086 CCCGTGTCCCTAA
1 CCCGTGTCCCTAA
80055099 CCCGTGTCCCTAA
1 CCCGTGTCCCTAA
80055112 CCCGTGT
1 CCCGTGT
80055119 AACTCTCTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.12, C:0.45, G:0.18, T:0.24
Consensus pattern (13 bp):
CCCGTGTCCCTAA
Found at i:80057514 original size:5 final size:5
Alignment explanation
Indices: 80057504--80057536 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
80057494 CATACCAACC
80057504 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATA
80057537 CATTTTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:80058233 original size:18 final size:16
Alignment explanation
Indices: 80058210--80058249 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 16
80058200 GAATCCTTGT
80058210 TAAAATAAAATACAATGG
1 TAAAATAAAATA-AAT-G
80058228 TAAAATAAAATAAATG
1 TAAAATAAAATAAATG
80058244 TAAAAT
1 TAAAAT
80058250 CCATATAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 7 0.32
17 3 0.14
18 12 0.55
ACGTcount: A:0.65, C:0.03, G:0.07, T:0.25
Consensus pattern (16 bp):
TAAAATAAAATAAATG
Found at i:80061382 original size:28 final size:27
Alignment explanation
Indices: 80061332--80061445 Score: 79
Period size: 28 Copynumber: 3.9 Consensus size: 27
80061322 CTATTCAGAA
*
80061332 ATCAGTGTTAA-CTGGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
80061359 ATCAGTATTAATCTGGGCCATAGCCC-T
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
* *
80061386 ATTACAATATCAGAGCATACTGGGCCTAGCCCAT
1 A-T-CAGTAT--TA--AT-CTGGGCCTAGCCCAT
* *
80061420 ATCAGTATCAGTCTGGGCCGTAGCCC
1 ATCAGTATTAATCTGGGCC-TAGCCC
80061446 TATTACAAGT
Statistics
Matches: 70, Mismatches: 7, Indels: 19
0.73 0.07 0.20
Matches are distributed among these distances:
27 19 0.27
28 21 0.30
29 5 0.07
30 1 0.01
31 1 0.01
32 5 0.07
33 9 0.13
34 9 0.13
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (27 bp):
ATCAGTATTAATCTGGGCCTAGCCCAT
Found at i:80061387 original size:62 final size:60
Alignment explanation
Indices: 80061309--80061453 Score: 177
Period size: 61 Copynumber: 2.4 Consensus size: 60
80061299 TCAAGCTTTA
* * *
80061309 CTGGGCCTAAGCCCTATT-CAGAAATCAGTG-TTAACTGGGCCTTAGCCCATATCAGTATTAAT
1 CTGGGCCT-AGCCCTATTACA-AAATCAGAGCAT-ACTGGGCC-TAGCCCATATCAGTATCAAT
* *
80061371 CTGGGCCATAGCCCTATTACAATATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAGT
1 CTGGGCC-TAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAAT
80061432 CTGGGCCGTAGCCCTATTACAA
1 CTGGGCC-TAGCCCTATTACAA
80061454 GTCGAGATAT
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
61 39 0.53
62 31 0.42
63 4 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (60 bp):
CTGGGCCTAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAAT
Found at i:80061528 original size:19 final size:20
Alignment explanation
Indices: 80061474--80061529 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
80061464 ATTGGGTCTT
*
80061474 GCCCATATTAACACAGTTGG
1 GCCCATATTAAAACAGTTGG
* **
80061494 GCCCATTTTATTACAGTT-G
1 GCCCATATTAAAACAGTTGG
*
80061513 GCCCATAATAAAACAGT
1 GCCCATATTAAAACAGT
80061530 CTCATATGAT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (20 bp):
GCCCATATTAAAACAGTTGG
Found at i:80069993 original size:27 final size:28
Alignment explanation
Indices: 80069956--80070068 Score: 117
Period size: 27 Copynumber: 4.2 Consensus size: 28
80069946 AGCATGGTTG
*
80069956 CCAGA-ACAGATA-TTGTGACAGAGTCA
1 CCAGATACAGATACTTGTGACAGAGCCA
* **
80069982 CCAGATACAGAT-GTTGTGGTAGAGCCA
1 CCAGATACAGATACTTGTGACAGAGCCA
* * *
80070009 TCAGAAACAGATACTTGTGGCAGAGCCA
1 CCAGATACAGATACTTGTGACAGAGCCA
* *
80070037 CCAGAT-CAGATATTTGTGACAGAGCTA
1 CCAGATACAGATACTTGTGACAGAGCCA
80070064 CCAGA
1 CCAGA
80070069 ACGCTTCCTC
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
26 5 0.07
27 50 0.69
28 17 0.24
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (28 bp):
CCAGATACAGATACTTGTGACAGAGCCA
Found at i:80070069 original size:55 final size:54
Alignment explanation
Indices: 80069956--80070069 Score: 133
Period size: 55 Copynumber: 2.1 Consensus size: 54
80069946 AGCATGGTTG
* **
80069956 CCAG-AACAGATATTGTGACAGAGTCACCAGATACAGATGTTGTGGTAGAGCCA
1 CCAGAAACAGATATTGTGACAGAGCCACCAGATACAGATGTTGTGACAGAGCCA
* * * *
80070009 TCAGAAACAGATACTTGTGGCAGAGCCACCAGAT-CAGATATTTGTGACAGAGCTA
1 CCAGAAACAGATA-TTGTGACAGAGCCACCAGATACAGAT-GTTGTGACAGAGCCA
80070064 CCAGAA
1 CCAGAA
80070070 CGCTTCCTCC
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 3 0.06
54 13 0.26
55 34 0.68
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (54 bp):
CCAGAAACAGATATTGTGACAGAGCCACCAGATACAGATGTTGTGACAGAGCCA
Found at i:80070503 original size:16 final size:15
Alignment explanation
Indices: 80070482--80070513 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
80070472 ACAAAATGCC
80070482 GGCTTTTCGGCATTTT
1 GGCTTTTCGGC-TTTT
80070498 GGCTTTTCGGCTTTT
1 GGCTTTTCGGCTTTT
80070513 G
1 G
80070514 CCGATCTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.03, C:0.19, G:0.28, T:0.50
Consensus pattern (15 bp):
GGCTTTTCGGCTTTT
Found at i:80073583 original size:13 final size:13
Alignment explanation
Indices: 80073565--80073590 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80073555 TTGAACCCAT
80073565 ACCAAAACAATCA
1 ACCAAAACAATCA
80073578 ACCAAAACAATCA
1 ACCAAAACAATCA
80073591 TAAAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:80079242 original size:11 final size:11
Alignment explanation
Indices: 80079226--80079254 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
80079216 TTGCTAGTTG
80079226 ATTCTTTTGCC
1 ATTCTTTTGCC
80079237 ATTCTTTTGCC
1 ATTCTTTTGCC
80079248 ATTCTTT
1 ATTCTTT
80079255 CTCTCCTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.10, C:0.24, G:0.07, T:0.59
Consensus pattern (11 bp):
ATTCTTTTGCC
Found at i:80080162 original size:29 final size:29
Alignment explanation
Indices: 80080125--80080180 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
80080115 GCATGAATAT
80080125 AAGGTGATTTGGGCCTAATGGGCCATAAA
1 AAGGTGATTTGGGCCTAATGGGCCATAAA
80080154 AAGGTGATTTGGGCCTAATGGGCCATA
1 AAGGTGATTTGGGCCTAATGGGCCATA
80080181 TGAATATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.29, C:0.14, G:0.32, T:0.25
Consensus pattern (29 bp):
AAGGTGATTTGGGCCTAATGGGCCATAAA
Found at i:80082112 original size:46 final size:46
Alignment explanation
Indices: 80082058--80082364 Score: 216
Period size: 46 Copynumber: 6.6 Consensus size: 46
80082048 GGCATCCGAG
*
80082058 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTCCAAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTCCAAA
** * * * *
80082104 CTAATTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAGGCAA---CCAAA
1 CTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-TACG-AATGTCCAAA
* * * * *
80082151 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTCCAAA
*
80082197 CTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAATGTCCAAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTCCAAA
** * * * * *
80082243 CTCGTTGAGTTGAGTTTGAGTTCA-TGAGATGTA-AC-TAGGCATCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATACGAATG--TCCAAA
* * * * * *
80082290 CTCGTTGAGTTGAATCTGAGTTCACTTATGGATGCGAACT-CCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAA-TGTCCAAA
* *
80082336 CTCGTTGAGTTGAGTCGGAGTTCGCTTAT
1 CTCGTTGAGTTGAGTCCGAGTTCACTTAT
80082365 AGGCAGGTTA
Statistics
Matches: 204, Mismatches: 40, Indels: 34
0.73 0.14 0.12
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 5 0.02
46 126 0.62
47 60 0.29
48 4 0.02
49 3 0.01
50 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTCCAAA
Found at i:80082311 original size:139 final size:139
Alignment explanation
Indices: 80082053--80082364 Score: 489
Period size: 139 Copynumber: 2.2 Consensus size: 139
80082043 ATTTAGGCAT
*
80082053 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTCCAAGCTAATTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTCCAAACTAATTGAGTTGAG
* *
80082118 TCCGAGTTCGTGAAATGTAACTAGGCAACCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
66 TCCGAGTTCATGAAATGTAACTAGGCAACCAAACTCGTTGAGTTGAATCCGAGTTCACTTATGGA
80082183 TGCGAACGC
131 TGCGAACGC
* **
80082192 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAATGTCCAAACTCGTTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTCCAAACTAATTGAGTTGAG
** * * * *
80082257 TTTGAGTTCATGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAATCTGAGTTCACTTATGGA
66 TCCGAGTTCATGAAATGTAACTAGGCAACCAAACTCGTTGAGTTGAATCCGAGTTCACTTATGGA
*
80082322 TGCGAACTC
131 TGCGAACGC
* *
80082331 CCGAGCTCGTTGAGTTGAGTCGGAGTTCGCTTAT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT
80082365 AGGCAGGTTA
Statistics
Matches: 158, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
139 158 1.00
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (139 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTCCAAACTAATTGAGTTGAG
TCCGAGTTCATGAAATGTAACTAGGCAACCAAACTCGTTGAGTTGAATCCGAGTTCACTTATGGA
TGCGAACGC
Found at i:80086309 original size:53 final size:54
Alignment explanation
Indices: 80086229--80086435 Score: 220
Period size: 53 Copynumber: 3.8 Consensus size: 54
80086219 TTCCTTTTTT
* * * * *
80086229 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAG
* **
80086282 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG
* * * * * * *
80086336 TGACTCATCAATGCCATGTCTTGACATCGTCTTACATGATTTCCTTTCCTTATAC
1 -AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAG
* * *
80086391 AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
80086436 ATTGTAACGC
Statistics
Matches: 128, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
52 2 0.02
53 43 0.34
54 40 0.31
55 41 0.32
56 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.36
Consensus pattern (54 bp):
AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAG
Found at i:80086368 original size:55 final size:54
Alignment explanation
Indices: 80086239--80086427 Score: 213
Period size: 55 Copynumber: 3.5 Consensus size: 54
80086229 AACTTACCAT
* * *
80086239 TGCCATGTCTTGACATGGTCTTACGTGGTATCC-TTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAGAACTCATCAA
* * *
80086292 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTGACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAG-AACTCATCAA
* * * * * *
80086347 TGCCATGTCTTGACATCGTCTTACATGATTTCCTTT-CCTTATACAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTTGCCTTATAGAACTCATCAA
*
80086401 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
80086428 ATATCCTTAT
Statistics
Matches: 114, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 2 0.02
53 35 0.31
54 33 0.29
55 39 0.34
56 5 0.04
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
Found at i:80089313 original size:55 final size:54
Alignment explanation
Indices: 80089200--80089376 Score: 223
Period size: 55 Copynumber: 3.3 Consensus size: 54
80089190 CATGTTCCAA
* *
80089200 ACATGGTCTTACATGGTATCCTTGT-CTTAT-GAACTCACCAATGCCATGCCTTG
1 ACATGGTCTTACATGGTA-CCTTTTCCTTATAGAACTCATCAATGCCATGCCTTG
* * *
80089253 GCATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTTG
1 ACATGGTCTTACATGGTACCTTTTCCTTATAG-AACTCATCAATGCCATGCCTTG
* ** * *
80089308 ACATGGTCTTACATGATTTCTTTACCTTATAGAACTTATCAATGCCATGCCTTG
1 ACATGGTCTTACATGGTACCTTTTCCTTATAGAACTCATCAATGCCATGCCTTG
*
80089362 GCATGGTCTTACATG
1 ACATGGTCTTACATG
80089377 ATATCCTTAT
Statistics
Matches: 107, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
52 5 0.05
53 21 0.20
54 35 0.33
55 46 0.43
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
ACATGGTCTTACATGGTACCTTTTCCTTATAGAACTCATCAATGCCATGCCTTG
Found at i:80089372 original size:54 final size:54
Alignment explanation
Indices: 80089201--80089390 Score: 229
Period size: 54 Copynumber: 3.5 Consensus size: 54
80089191 ATGTTCCAAA
* * ** *
80089201 CATGGTCTTACATGGTATCCTTGTCTTAT-GAACTCACCAATGCCATGCCTTGG
1 CATGGTCTTACATGATATCTTTACCTTATAGAACTCATCAATGCCATGCCTTGG
** * * * *
80089254 CATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTTGA
1 CATGGTCTTACATGATATCTTTACCTTATAG-AACTCATCAATGCCATGCCTTGG
* *
80089309 CATGGTCTTACATGATTTCTTTACCTTATAGAACTTATCAATGCCATGCCTTGG
1 CATGGTCTTACATGATATCTTTACCTTATAGAACTCATCAATGCCATGCCTTGG
* *
80089363 CATGGTCTTACATGATATCCTTATCTTA
1 CATGGTCTTACATGATATCTTTACCTTA
80089391 CCAAATGCCA
Statistics
Matches: 116, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
53 24 0.21
54 46 0.40
55 46 0.40
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (54 bp):
CATGGTCTTACATGATATCTTTACCTTATAGAACTCATCAATGCCATGCCTTGG
Found at i:80090931 original size:46 final size:45
Alignment explanation
Indices: 80090864--80091038 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 45
80090854 TGTAACCCGC
*
80090864 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCG-GCATTCGTAT
* *
80090910 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATACCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGTA--T
* *** * * *
80090956 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGTAT
*
80091003 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
80091039 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
44 4 0.04
45 1 0.01
46 67 0.63
47 31 0.29
49 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGTAT
Found at i:80090980 original size:93 final size:93
Alignment explanation
Indices: 80090872--80091040 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
80090862 GCCCATAAGT
* * *
80090872 GAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
80090936 ACGAGCTCGGATACCTAGTTACATCTCTC
65 ACGAGCTCGGATACCTAGTTACATCTCTC
*
80090965 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
80091030 CGAGTTCGGAT
66 CGAGCTCGGAT
80091041 GCTCAACCAT
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 68 0.97
94 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATACCTAGTTACATCTCTC
Found at i:80091058 original size:46 final size:45
Alignment explanation
Indices: 80090915--80091058 Score: 111
Period size: 46 Copynumber: 3.1 Consensus size: 45
80090905 CGTATCCATA
*
80090915 AGTGAACTCGGACTCAACTCAACGAGCTCGGATACCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATACC-A---ACCATC-CT
* * *
80090964 --CGAACTCAGACTCAACTCAACGAGTTCGG--A-CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATACCA-AC-CATCC-T
*
80091007 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATAC-CAACCATCCT
80091054 AGTGA
1 AGTGA
80091059 CATGTCACTT
Statistics
Matches: 77, Mismatches: 8, Indels: 23
0.71 0.07 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 6 0.08
44 1 0.01
45 1 0.01
46 32 0.42
47 27 0.35
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATACCAACCATCCT
Found at i:80092997 original size:15 final size:15
Alignment explanation
Indices: 80092973--80093020 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
80092963 AGGAAACCGA
80092973 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
80092988 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
80093002 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
80093018 ATA
1 ATA
80093021 CGATACTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:80096088 original size:46 final size:46
Alignment explanation
Indices: 80095964--80096092 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
80095954 TGTAACCCGC
** * *
80095964 CCATAAGTGAACTCGGACTCAACTCAACGAACTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
80096010 CCATAAGTGAACTCGGACTCAACTTAATGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
80096056 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80096093 TGCTCAACCA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:80096111 original size:46 final size:45
Alignment explanation
Indices: 80095969--80096111 Score: 119
Period size: 46 Copynumber: 3.1 Consensus size: 45
80095959 CCCGCCCATA
** ** * *
80095969 AGTGAACTCGGACTCAACTCAACGAACTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
* * *** *
80096014 AAGTGAACTCGGACTCAACTTAATGAGTTCGGACATTC-GCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
80096060 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCT
80096107 AGTGA
1 AGTGA
80096112 CATGTCACTT
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
46 77 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCT
Found at i:80105624 original size:465 final size:462
Alignment explanation
Indices: 80104838--80105772 Score: 1550
Period size: 465 Copynumber: 2.0 Consensus size: 462
80104828 ATATAGATAA
* *
80104838 GGAATTTAACAAAGATGATCTTCTTTTATATCTACTAATCCAACAGCTGTTGAAAGATATGTCGT
1 GGAATTGAACAAAGATGATCTGCTTTTATATCTACTAATCCAACAGCTGTTGAAAGATATGTCGT
* *
80104903 TGTTTAATTGATACATACATGTAATAGATTTTTATAAAATGTTTGAAATTGATAAATCGAACTGA
66 TGTTTAATTGATACATACATATAATAGATTTTTATAAAATGTTTGAAATTGATAAATCGAACTAA
* * *
80104968 ATTTTTATATAGATTGAGAATTGAACCTAGATGATTATGCTTTTATATCTACTAATCCAACAGTG
131 ATTTTTATATAGATCGAGAATTGAACCTAGATGATCATGCTTTTATATCTACTAACCCAACAGTG
* * *
80105033 GTTGAGAGATATGTCGTTGTGCATGGTCAGATAATATTACAACTCTTTGCAAAGTATCTTGATGA
196 GTTGAGAGATATGTCATTGTGCATAGTCAGATAATACTACAACTCTTTGCAAAGTATCTTGATGA
80105098 GAAGATTGAGAGGTGCACATTTGTCGTAGGCTTTGCAAATAAAATGAAGGAGAGACACCATACAA
261 GAAGATTGAGAGGTGCACATTTGTCGTAGGCTTTGCAAATAAAATGAAGGAGAGACACCATACAA
* * * * *
80105163 AATGGTTAGTTAAAAAGTACTAGTTATAACTATTTCAATTTTTGGGAATAAATTGAATAAAATGT
326 AATGGTTAGTTAAAAAGGACTAGTTATAACCATTTCAATTTTAGAGAATAAATAGAATAAAATGT
*
80105228 GAAACTTTAAGAGG-TTACAAATAATGAAATTGAACTAATACATACATATAATAGATTGTTATAA
391 GAAACTTTAAGAGGCATACAAATAATGAAATTGAACTAATACATACATATAATAGATTGTTATAA
80105292 GATGTTT
456 GATGTTT
*
80105299 GGAATTGAACCAAGATGATCATGCTTTTATATCTACTAATCCAACAGCTGTTGAAAGATATGTCG
1 GGAATTGAACAAAGATGATC-TGCTTTTATATCTACTAATCCAACAGCTGTTGAAAGATATGTCG
*
80105364 TTGTTTAATTGATATATACATATATATGATAGATTTTTATAAAATGTTTGAAATTGATAAATCGA
65 TTGTTTAATTGATACATAC--ATATA--ATAGATTTTTATAAAATGTTTGAAATTGATAAATCGA
* * *
80105429 ACTAAATTTTTATATAGATCGAGAATTGAGCCTCGATGATCATGCTTTTGTATC-ACTAACCCAA
126 ACTAAATTTTTATATAGATCGAGAATTGAACCTAGATGATCATGCTTTTATATCTACTAACCCAA
*
80105493 CAGTTGTTGAGAGATATGTCATTGTGCATAGTCAGATAATACTACAACTCTTTGCAAAGTATCTT
191 CAGTGGTTGAGAGATATGTCATTGTGCATAGTCAGATAATACTACAACTCTTTGCAAAGTATCTT
80105558 GATGAGAAGATTGAGAGGTGCACATTTGTCGTAGGCTTTGCAAATAAAATGAAGGAGAGACACCA
256 GATGAGAAGATTGAGAGGTGCACATTTGTCGTAGGCTTTGCAAATAAAATGAAGGAGAGACACCA
*
80105623 TACAAAATGGTTAGTTAAAAAGGACTAGTTATAACCATTTCAATTTTAGAGACTAAATAGAATAA
321 TACAAAATGGTTAGTTAAAAAGGACTAGTTATAACCATTTCAATTTTAGAGAATAAATAGAATAA
* * * **
80105688 AATGTGAAACTTTAAGGGGCATACGAATAATGAAATTGAACTGATACATATGTATAATAGATTGT
386 AATGTGAAACTTTAAGAGGCATACAAATAATGAAATTGAACTAATACATACATATAATAGATTGT
80105753 TATAAGATGTTT
451 TATAAGATGTTT
*
80105765 AGAATTGA
1 GGAATTGA
80105773 TCAATCGAAC
Statistics
Matches: 439, Mismatches: 29, Indels: 7
0.92 0.06 0.01
Matches are distributed among these distances:
461 18 0.04
462 61 0.14
464 4 0.01
465 212 0.48
466 144 0.33
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.34
Consensus pattern (462 bp):
GGAATTGAACAAAGATGATCTGCTTTTATATCTACTAATCCAACAGCTGTTGAAAGATATGTCGT
TGTTTAATTGATACATACATATAATAGATTTTTATAAAATGTTTGAAATTGATAAATCGAACTAA
ATTTTTATATAGATCGAGAATTGAACCTAGATGATCATGCTTTTATATCTACTAACCCAACAGTG
GTTGAGAGATATGTCATTGTGCATAGTCAGATAATACTACAACTCTTTGCAAAGTATCTTGATGA
GAAGATTGAGAGGTGCACATTTGTCGTAGGCTTTGCAAATAAAATGAAGGAGAGACACCATACAA
AATGGTTAGTTAAAAAGGACTAGTTATAACCATTTCAATTTTAGAGAATAAATAGAATAAAATGT
GAAACTTTAAGAGGCATACAAATAATGAAATTGAACTAATACATACATATAATAGATTGTTATAA
GATGTTT
Found at i:80105998 original size:147 final size:147
Alignment explanation
Indices: 80105729--80106017 Score: 382
Period size: 147 Copynumber: 2.0 Consensus size: 147
80105719 GAAATTGAAC
** * * * **
80105729 TGATACATATGTATAATAGATTGTTATAAGATGTTTAGAATTGATCAATCGAACTGAATTGTTAT
1 TGATACATACATATAATAGATTGTTATAAAATGTTTAGAATTAATAAATCGAACCAAATTGTTAT
* * * * *
80105794 ATAGATCAGTAATTGATCCAAGATGATCTTATTTTTATATCTACTAATCCAACAGTTGTTGAGAG
66 ATAGATCAGGAATTGAACCAAGATGATCATACTTTTATATCTACTAATCCAACAGTTGTTGAAAG
80105859 ATATGCTGTTGTTTAAT
131 ATATGCTGTTGTTTAAT
* * *
80105876 TGATACATACATATAATAGATTTTTATAAAATGTTT-GAAATTAATAAATCGAGCCAAATTTTTA
1 TGATACATACATATAATAGATTGTTATAAAATGTTTAG-AATTAATAAATCGAACCAAATTGTTA
* * * *
80105940 TATAGATCGGGAATTGAACCTAGATGATCATGCTTTTATATCTACTAATCCAATAGTTGTTGAAA
65 TATAGATCAGGAATTGAACCAAGATGATCATACTTTTATATCTACTAATCCAACAGTTGTTGAAA
*
80106005 GATATGTTGTTGT
130 GATATGCTGTTGT
80106018 GCATGGTCAA
Statistics
Matches: 121, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
146 1 0.01
147 120 0.99
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (147 bp):
TGATACATACATATAATAGATTGTTATAAAATGTTTAGAATTAATAAATCGAACCAAATTGTTAT
ATAGATCAGGAATTGAACCAAGATGATCATACTTTTATATCTACTAATCCAACAGTTGTTGAAAG
ATATGCTGTTGTTTAAT
Found at i:80109096 original size:51 final size:51
Alignment explanation
Indices: 80109020--80109238 Score: 307
Period size: 51 Copynumber: 4.3 Consensus size: 51
80109010 CTGGTACGCA
* * * * * *
80109020 TAGTAGTACACATGTGA-CCAA-TTATCCGGTACACGTAGTAGCCTGCACT
1 TAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
*
80109069 TAGTACTATACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
* *
80109120 TAGTACTACACACGTGGTCGAAGTTATCGGGTATGCATAGTAGCCTGCACT
1 TAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
* * *
80109171 TAGTATTACACACGTGGTCGAAGTTATCGGGTATGCATAGTAGCCTGCACT
1 TAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
*
80109222 TAGTACTACACATGTGA
1 TAGTACTACACACGTGA
80109239 CCTCACAATA
Statistics
Matches: 154, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
49 14 0.09
50 3 0.02
51 137 0.89
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (51 bp):
TAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
Found at i:80109517 original size:27 final size:27
Alignment explanation
Indices: 80109487--80109540 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
80109477 TCATACAACC
* *
80109487 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
80109514 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
80109541 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:80115001 original size:49 final size:49
Alignment explanation
Indices: 80114948--80115124 Score: 232
Period size: 49 Copynumber: 3.6 Consensus size: 49
80114938 CTGGTACGCA
80114948 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACG
* * * * *
80114997 TAGTAGCCTGCACTTAGTACGATACACGTG-ATCGAAGTTATCGGGTACGCAG
1 TAGTAGCCTGCACTTAGTAC--TACACATGCAACCAA-TTATCCGGTACAC-G
* * *
80115049 -AGTAGCCCGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACG
80115097 TAGTAGCCTGCACTTAGTACTACACATG
1 TAGTAGCCTGCACTTAGTACTACACATG
80115125 TGACCTCACA
Statistics
Matches: 108, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
48 1 0.01
49 63 0.58
50 7 0.06
51 36 0.33
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACG
Found at i:80115075 original size:100 final size:100
Alignment explanation
Indices: 80114935--80115116 Score: 319
Period size: 100 Copynumber: 1.8 Consensus size: 100
80114925 TAGACAAGGC
* * * *
80114935 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACGTAG
1 TATCGGGTACGCAGAGTAGCCCGCACTTAGTACTACACATGCAACCAATTATCCAGTACACGTAG
80115000 TAGCCTGCACTTAGTACGATACACGTGATCGAAGT
66 TAGCCTGCACTTAGTACGATACACGTGATCGAAGT
*
80115035 TATCGGGTACGCAGAGTAGCCCGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
1 TATCGGGTACGCAGAGTAGCCCGCACTTAGTACTACACATGCAACCAATTATCCAGTACACGTAG
80115100 TAGCCTGCACTTAGTAC
66 TAGCCTGCACTTAGTAC
80115117 TACACATGTG
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 77 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (100 bp):
TATCGGGTACGCAGAGTAGCCCGCACTTAGTACTACACATGCAACCAATTATCCAGTACACGTAG
TAGCCTGCACTTAGTACGATACACGTGATCGAAGT
Found at i:80122082 original size:76 final size:77
Alignment explanation
Indices: 80121991--80122150 Score: 225
Period size: 76 Copynumber: 2.1 Consensus size: 77
80121981 AGTACATTTG
* * * *
80121991 TGTGCAATTGTGAGACCATAGCTAAGCTATGACAAAGTGATAAAGTC-TGTGATCATGGCAAGGC
1 TGTGCAAGTGCGAGACCATAGCTAAGCTATGACAAAGTGATAAAG-CGTGCGATCATGGCAAAGC
*
80122055 CATGGT-AAAATA
65 CATGATAAAAATA
** *
80122067 TGTGCAAGTGCGAGACCATAGCTAAGCTATGGTAATGTGATAAAGCGTGCGATCATGGCAAAGCC
1 TGTGCAAGTGCGAGACCATAGCTAAGCTATGACAAAGTGATAAAGCGTGCGATCATGGCAAAGCC
80122132 ATGATAAAAATA
66 ATGATAAAAATA
80122144 TGTGCAA
1 TGTGCAA
80122151 AACCAAAGTG
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
75 1 0.01
76 60 0.81
77 13 0.18
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.24
Consensus pattern (77 bp):
TGTGCAAGTGCGAGACCATAGCTAAGCTATGACAAAGTGATAAAGCGTGCGATCATGGCAAAGCC
ATGATAAAAATA
Found at i:80123486 original size:22 final size:22
Alignment explanation
Indices: 80123461--80123504 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
80123451 TTGGTGCTGC
80123461 CATACACTAAGTCACAATGCCA
1 CATACACTAAGTCACAATGCCA
80123483 CATACACTAAGTCACAATGCCA
1 CATACACTAAGTCACAATGCCA
80123505 AACTCAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.32, G:0.09, T:0.18
Consensus pattern (22 bp):
CATACACTAAGTCACAATGCCA
Found at i:80128714 original size:39 final size:40
Alignment explanation
Indices: 80128619--80128841 Score: 248
Period size: 39 Copynumber: 5.7 Consensus size: 40
80128609 TTGAATGATG
*
80128619 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
80128657 ATCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
80128698 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
80128737 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
80128776 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
80128815 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
80128842 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 92 0.57
40 59 0.36
41 10 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:80128803 original size:79 final size:81
Alignment explanation
Indices: 80128619--80128847 Score: 283
Period size: 79 Copynumber: 2.9 Consensus size: 81
80128609 TTGAATGATG
* * * *
80128619 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATATCCGGGCTAAGACCCGAAGGCAT
*
80128681 TTGTACGAGATACTAAT
65 TTGTACGAGATACTAAA
80128698 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCCGGGCTAAGACCCGAAGGCATT
* *
80128760 TGTGCGAGTTACTAAA
66 TGTACGAGATACTAAA
* * * * *
80128776 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCCGGGCTAAGACCCGAAGGCATT
*
80128840 TGAACGAG
66 TGTACGAG
80128848 GAGCTATATC
Statistics
Matches: 131, Mismatches: 13, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
78 45 0.34
79 59 0.45
80 27 0.21
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTACGAGATACTAAA
Found at i:80128863 original size:79 final size:77
Alignment explanation
Indices: 80128619--80128874 Score: 236
Period size: 79 Copynumber: 3.3 Consensus size: 77
80128609 TTGAATGATG
* * * * *
80128619 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAATA-CCGGGCTAAG-CCCGAAGGCAT
*
80128681 TTGTACGAGATACTAA
63 TTGTACGAG-GACTAA
* * *
80128697 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTT
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAATACCGGGCTAAGCCCGAAGGCATTT
* *
80128761 GTGCGAGTTACTAAA
65 GTACGAG-GACT-AA
*
80128776 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
80128840 TGAACGAGGAGCTATA
64 TGTACGAGGA-CTA-A
* *
80128856 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
80128875 TACGTGATTT
Statistics
Matches: 151, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
78 43 0.28
79 74 0.49
80 34 0.23
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (77 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAATACCGGGCTAAGCCCGAAGGCATTTG
TACGAGGACTAA
Found at i:80131459 original size:40 final size:40
Alignment explanation
Indices: 80131415--80131496 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
80131405 AAAAAGTATG
80131415 GATTTCTTTTTCAAATTGAATTTAGTTGTGCCACAACATA
1 GATTTCTTTTTCAAATTGAATTTAGTTGTGCCACAACATA
80131455 GATTTCTTTTTCAAATTGAATTTAGTTGTGCCACAACATA
1 GATTTCTTTTTCAAATTGAATTTAGTTGTGCCACAACATA
80131495 GA
1 GA
80131497 AATGGTGAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.41
Consensus pattern (40 bp):
GATTTCTTTTTCAAATTGAATTTAGTTGTGCCACAACATA
Found at i:80132074 original size:37 final size:37
Alignment explanation
Indices: 80132024--80132099 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
80132014 AGTTGTTGGG
80132024 AAAAGGTTATGGATTGATTAAGTGAGGGATTTTAATC
1 AAAAGGTTATGGATTGATTAAGTGAGGGATTTTAATC
80132061 AAAAGGTTATGGATTGATTAAGTGAGGGATTTTAATC
1 AAAAGGTTATGGATTGATTAAGTGAGGGATTTTAATC
80132098 AA
1 AA
80132100 TATTAGCTAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.37, C:0.03, G:0.26, T:0.34
Consensus pattern (37 bp):
AAAAGGTTATGGATTGATTAAGTGAGGGATTTTAATC
Found at i:80133193 original size:21 final size:21
Alignment explanation
Indices: 80133169--80133223 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
80133159 TCTGCTGCCA
*
80133169 TCGCTGCTGCCTCTGCCTCCC
1 TCGCTACTGCCTCTGCCTCCC
*
80133190 TCGCTACTGCCGCTGCCTCCC
1 TCGCTACTGCCTCTGCCTCCC
*
80133211 TCTCTACTGCCTC
1 TCGCTACTGCCTC
80133224 CGCTCTAAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.04, C:0.51, G:0.16, T:0.29
Consensus pattern (21 bp):
TCGCTACTGCCTCTGCCTCCC
Found at i:80133658 original size:13 final size:14
Alignment explanation
Indices: 80133632--80133660 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
80133622 ACTAATGACG
80133632 AATTAAACCATTAT
1 AATTAAACCATTAT
80133646 AATTAAA-CATTAT
1 AATTAAACCATTAT
80133659 AA
1 AA
80133661 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:80138879 original size:13 final size:13
Alignment explanation
Indices: 80138861--80138890 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
80138851 TAACTTATGA
80138861 TATGATATATATT
1 TATGATATATATT
80138874 TATGATATATATT
1 TATGATATATATT
80138887 TATG
1 TATG
80138891 TATTATGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (13 bp):
TATGATATATATT
Found at i:80139826 original size:50 final size:49
Alignment explanation
Indices: 80139750--80139873 Score: 133
Period size: 50 Copynumber: 2.5 Consensus size: 49
80139740 TAACATAACG
* * * * *
80139750 TATAAATGTTATGAGCTAAATTTGTTAAATTATGATTAAATTGACAGAAGA
1 TATAAAT-TTAAGATCT-AATTTGTTAAATCAAGATCAAATTGACAGAAGA
* * * *
80139801 TATAAATATTACGATTTAATTTGTTAAATCAAGATCAAATTGATAGAATA
1 TATAAAT-TTAAGATCTAATTTGTTAAATCAAGATCAAATTGACAGAAGA
80139851 TATAAATTTAAGATCT-ATTTGTT
1 TATAAATTTAAGATCTAATTTGTT
80139874 TTGTGTAAAC
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
48 7 0.11
49 7 0.11
50 35 0.56
51 13 0.21
ACGTcount: A:0.43, C:0.05, G:0.12, T:0.40
Consensus pattern (49 bp):
TATAAATTTAAGATCTAATTTGTTAAATCAAGATCAAATTGACAGAAGA
Found at i:80142902 original size:21 final size:21
Alignment explanation
Indices: 80142877--80142945 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
80142867 AAGCCCAAAA
*
80142877 CCAATAGACTAAACGCTAAAC
1 CCAATAGACTAAACCCTAAAC
*
80142898 CCAATACAC-AATACCCTAAAC
1 CCAATAGACTAA-ACCCTAAAC
*
80142919 CCTATAGACTAAACCCTAAAC
1 CCAATAGACTAAACCCTAAAC
80142940 CCAATA
1 CCAATA
80142946 CCCAATACCC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 2 0.05
21 37 0.90
22 2 0.05
ACGTcount: A:0.46, C:0.33, G:0.04, T:0.16
Consensus pattern (21 bp):
CCAATAGACTAAACCCTAAAC
Found at i:80142927 original size:42 final size:42
Alignment explanation
Indices: 80142880--80142961 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
80142870 CCCAAAACCA
*
80142880 ATAGACTAAACGCTAAACCCAATACACAATACCCTAAACCCT
1 ATAGACTAAACCCTAAACCCAATACACAATACCCTAAACCCT
*
80142922 ATAGACTAAACCCTAAACCCAATACCCAATACCCTAAACC
1 ATAGACTAAACCCTAAACCCAATACACAATACCCTAAACC
80142962 TTGAACCTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.45, C:0.35, G:0.04, T:0.16
Consensus pattern (42 bp):
ATAGACTAAACCCTAAACCCAATACACAATACCCTAAACCCT
Found at i:80142955 original size:21 final size:21
Alignment explanation
Indices: 80142892--80142961 Score: 88
Period size: 21 Copynumber: 3.3 Consensus size: 21
80142882 AGACTAAACG
*
80142892 CTAAACCCAATACACAATACC
1 CTAAACCCAATACCCAATACC
* * *
80142913 CTAAACCCTATAGACTAA-ACC
1 CTAAACCCAATA-CCCAATACC
80142934 CTAAACCCAATACCCAATACC
1 CTAAACCCAATACCCAATACC
80142955 CTAAACC
1 CTAAACC
80142962 TTGAACCTAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
20 3 0.08
21 35 0.88
22 2 0.05
ACGTcount: A:0.44, C:0.39, G:0.01, T:0.16
Consensus pattern (21 bp):
CTAAACCCAATACCCAATACC
Found at i:80143438 original size:22 final size:22
Alignment explanation
Indices: 80143410--80143463 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
80143400 AAAATTTATT
*
80143410 TTTAAGATTTTAGGGTTTAT-G
1 TTTAAGAGTTTAGGGTTTATAG
80143431 ATTTAAGAGTTTAGGGTTTATAG
1 -TTTAAGAGTTTAGGGTTTATAG
80143454 TTTAAG-GTTT
1 TTTAAGAGTTT
80143464 GAGATTTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 4 0.13
22 25 0.83
23 1 0.03
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (22 bp):
TTTAAGAGTTTAGGGTTTATAG
Found at i:80143785 original size:17 final size:17
Alignment explanation
Indices: 80143754--80143787 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
80143744 TGATCAAATT
* *
80143754 AAATAAAAGTGAAATAA
1 AAATAAAAATAAAATAA
80143771 AAATAAAAATAAAATAA
1 AAATAAAAATAAAATAA
80143788 GACTTTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (17 bp):
AAATAAAAATAAAATAA
Found at i:80144301 original size:114 final size:115
Alignment explanation
Indices: 80144116--80144335 Score: 293
Period size: 114 Copynumber: 1.9 Consensus size: 115
80144106 GATGCGTTTC
*
80144116 AAAAAGCGCCGCTAATACTCAATCTATTGCGGCGTTTTCGACAAAGCGCCACTAATGCCACTAAA
1 AAAAAGCGCCGCTAATACTCAATCTATTGCAGCGTTTTCGACAAAGCGCCACTAATGCCACTAAA
* * * *
80144181 TCTCAAAGTAAAATGACGTCGTTTGGCTTAATCTTTTAGCGGCGCTTTTTG
66 GCTCAAAAT-AAACGACGTCGTTCGGCTTAATCTTTTAGCGGCGCTTTTTG
** ** **
80144232 AAAAA-CGCCGCTAA-AGCTCAA-CTATTGCAGCGTTTTTTATTAAGCGCCGTTAATGCCACTAA
1 AAAAAGCGCCGCTAATA-CTCAATCTATTGCAGCGTTTTCGACAAAGCGCCACTAATGCCACTAA
*
80144294 AGCTCAAAATAAACGATGTCGTTCGGCTTAATCTTTTAGCGG
65 AGCTCAAAATAAACGACGTCGTTCGGCTTAATCTTTTAGCGG
80144336 TGTTTTTTCA
Statistics
Matches: 91, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
113 29 0.32
114 43 0.47
115 14 0.15
116 5 0.05
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.29
Consensus pattern (115 bp):
AAAAAGCGCCGCTAATACTCAATCTATTGCAGCGTTTTCGACAAAGCGCCACTAATGCCACTAAA
GCTCAAAATAAACGACGTCGTTCGGCTTAATCTTTTAGCGGCGCTTTTTG
Found at i:80145173 original size:27 final size:27
Alignment explanation
Indices: 80145119--80145174 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
80145109 AATATAATAT
*
80145119 AATTATAAAATAATTGAATTGCACTTA
1 AATTATAAAATAATTGAATTGCAATTA
**
80145146 AATTATTAAAAT-ATTGAATTTTAATTA
1 AATTA-TAAAATAATTGAATTGCAATTA
80145173 AA
1 AA
80145175 ATAATTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.50, C:0.04, G:0.05, T:0.41
Consensus pattern (27 bp):
AATTATAAAATAATTGAATTGCAATTA
Found at i:80156997 original size:64 final size:59
Alignment explanation
Indices: 80156864--80156997 Score: 137
Period size: 59 Copynumber: 2.2 Consensus size: 59
80156854 TCTTTTCTTG
* * * * *
80156864 TATTATTCATTTTAAAATTTTATTTTATTTTATTACTATTTTTTTAAGTTTTCTTTCATA
1 TATTATT-ATTTTAAAATATTATTTTATTTTATTAATATTTTTATAAGTATTCTTTCAAA
80156924 TATTATTATTTTAAAATATTATTTTATTTTATCTTAA-ATCATTTTATATAGTATTCATTTCAAA
1 TATTATTATTTTAAAATATTATTTTATTTTA--TTAATAT--TTTTATA-AGTATTC-TTTCAAA
80156988 CTATT-TTATT
1 -TATTATTATT
80156998 ATATACTATT
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
59 23 0.37
60 9 0.15
61 3 0.05
62 6 0.10
63 6 0.10
64 11 0.18
65 4 0.06
ACGTcount: A:0.31, C:0.07, G:0.01, T:0.61
Consensus pattern (59 bp):
TATTATTATTTTAAAATATTATTTTATTTTATTAATATTTTTATAAGTATTCTTTCAAA
Found at i:80157099 original size:23 final size:22
Alignment explanation
Indices: 80157046--80157099 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
80157036 AAGTTGCTAA
*
80157046 ATATATATTATTTTAAACTTTTT
1 ATATAT-TTAATTTAAACTTTTT
* *
80157069 ATGTTATTTAATTTAAATTTTTTT
1 AT-ATATTTAATTTAAA-CTTTTT
80157093 ATATATT
1 ATATATT
80157100 ATTTTCTTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
23 15 0.60
24 10 0.40
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (22 bp):
ATATATTTAATTTAAACTTTTT
Found at i:80169146 original size:45 final size:45
Alignment explanation
Indices: 80169032--80169237 Score: 148
Period size: 44 Copynumber: 4.6 Consensus size: 45
80169022 CATCATTGCG
* * * * * * **
80169032 AATCTAATCTCCCTCAAGTTACAGTAGATCAAATTGAAGCCA-CA
1 AATCTCATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCA
* * * * * * * *
80169076 ACTCTTATCTCCTTGAAATTGCAGTGAAGTAGACTGAAGATAGGA
1 AATCTCATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCA
* * **
80169121 AATCTCATCTCCCTAAAGTTACAGTGGAGCAGATTGAAGCCA-CA
1 AATCTCATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCA
* * * *
80169165 AGTCTTATCTCTCTGAAGTTGA-AGCGGAGCAGACTGAAGATAGCA
1 AATCTCATCTCCCTGAAGTT-ACAGTGGAGCAGACTGAAGATAGCA
* *
80169210 AATCTCATTTCCTTGAAGTTACAGTGGA
1 AATCTCATCTCCCTGAAGTTACAGTGGA
80169238 ACATATTAAA
Statistics
Matches: 117, Mismatches: 41, Indels: 7
0.71 0.25 0.04
Matches are distributed among these distances:
44 62 0.53
45 55 0.47
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (45 bp):
AATCTCATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCA
Found at i:80169199 original size:89 final size:89
Alignment explanation
Indices: 80169032--80169237 Score: 261
Period size: 89 Copynumber: 2.3 Consensus size: 89
80169022 CATCATTGCG
* * * *
80169032 AATCTAATCTCCCTCAAGTTACAGTAGATCAAATTGAAGCCACAACTCTTATCTCCTTGAAATTG
1 AATCTCATCTCCCTAAAGTTACAGTGGAGCAAATTGAAGCCACAACTCTTATCTCCTTGAAATTG
* * * *
80169097 CAGTGAAGTAGACTGAAGATAGGA
66 AAGCGAAGCAGACTGAAGATAGCA
* * *
80169121 AATCTCATCTCCCTAAAGTTACAGTGGAGCAGATTGAAGCCACAAGTCTTATCT-CTCTGAAGTT
1 AATCTCATCTCCCTAAAGTTACAGTGGAGCAAATTGAAGCCACAACTCTTATCTCCT-TGAAATT
*
80169185 GAAGCGGAGCAGACTGAAGATAGCA
65 GAAGCGAAGCAGACTGAAGATAGCA
* * *
80169210 AATCTCATTTCCTTGAAGTTACAGTGGA
1 AATCTCATCTCCCTAAAGTTACAGTGGA
80169238 ACATATTAAA
Statistics
Matches: 101, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
88 2 0.02
89 99 0.98
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (89 bp):
AATCTCATCTCCCTAAAGTTACAGTGGAGCAAATTGAAGCCACAACTCTTATCTCCTTGAAATTG
AAGCGAAGCAGACTGAAGATAGCA
Found at i:80169524 original size:44 final size:44
Alignment explanation
Indices: 80169466--80169555 Score: 110
Period size: 44 Copynumber: 2.0 Consensus size: 44
80169456 AGTTCCACCA
* * * *
80169466 GAGTAGATCGAAGCTACAAATCTCTTCTCCCTGGAA-TTACATTG
1 GAGTAAATCAAAGCTACAAATCTCATCTCCCT-GAAGTTACAGTG
* *
80169510 GAGTAAATCAAAGCTACAAGTCTCATCTCTCTGAAGTTACAGTG
1 GAGTAAATCAAAGCTACAAATCTCATCTCCCTGAAGTTACAGTG
80169554 GA
1 GA
80169556 TCAGAACAAG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 3 0.08
44 36 0.92
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (44 bp):
GAGTAAATCAAAGCTACAAATCTCATCTCCCTGAAGTTACAGTG
Found at i:80171769 original size:47 final size:46
Alignment explanation
Indices: 80171701--80172022 Score: 172
Period size: 48 Copynumber: 6.8 Consensus size: 46
80171691 CACGTGTGCT
* *
80171701 AGTGTAAGA-CATGTCTGGGACAT-TCATCGGTCACATT-ATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG---CATTAACGAGAGCC
* *
80171747 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGACACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATT-A-ACGAGAGCC
* * * *
80171795 AGTGTAAGACCATGTCTGGGACATGGTATCGGC-TATGA-GATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TAACGA-GAGCC
** * * ** *
80171841 AACGTAAGACCATGTCTGGGACATGGCATCGACACGAATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCG--GC-ATTA-ACGAGAGCC
* * * * * *
80171891 AGTGTAAGACCAGGTCTGAGACATGGCTTCGGCCTCGATT-GCGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG---C-ATTAACGAGAGCC
* * * ** * *
80171940 AATGTAAGACCATGTCTGAGACGTGGCATCAAC-TTGATGTATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAACG-A-GAGCC
*
80171987 AGTGTAAGACCATGTCTGGGGGCATGGCATCGGCAT
1 AGTGTAAGACCATGTCT-GGGACATGGCATCGGCAT
80172023 CCTACCCTAT
Statistics
Matches: 208, Mismatches: 47, Indels: 39
0.71 0.16 0.13
Matches are distributed among these distances:
44 2 0.01
45 7 0.03
46 42 0.20
47 34 0.16
48 56 0.27
49 33 0.16
50 28 0.13
51 6 0.03
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAACGAGAGCC
Found at i:80171908 original size:96 final size:96
Alignment explanation
Indices: 80171750--80171969 Score: 243
Period size: 96 Copynumber: 2.3 Consensus size: 96
80171740 GAGAGCCAGT
* * * * *
80171750 GTAAGACCATGTCTGGGACATGGCATTGGCATTGACACGAGAGCTAGTGTAAGACCATGTCTGGG
1 GTAAGACCATGTCTGGGACATGGCATCGACATCGACACGAGAGCTAGTGTAAGACCAGGTCTGAG
*
80171815 ACATGG-TATCGG-CT-A-TGAGATGTGTCAAC
66 ACATGGCT-TCGGCCTCATTGAGAT-AGTCAAC
* *
80171844 GTAAGACCATGTCTGGGACATGGCATCGACA-CGAATATGTGAGAGCTAGTGTAAGACCAGGTCT
1 GTAAGACCATGTCTGGGACATGGCATCGACATCG-ACA--CGAGAGCTAGTGTAAGACCAGGTCT
* *
80171908 GAGACATGGCTTCGGCCTCGATTGCGATAGTCAAT
63 GAGACATGGCTTCGGCCTC-ATTGAGATAGTCAAC
* *
80171943 GTAAGACCATGTCTGAGACGTGGCATC
1 GTAAGACCATGTCTGGGACATGGCATC
80171970 AACTTGATGT
Statistics
Matches: 106, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
93 1 0.01
94 31 0.29
96 35 0.33
97 3 0.03
99 31 0.29
100 5 0.05
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (96 bp):
GTAAGACCATGTCTGGGACATGGCATCGACATCGACACGAGAGCTAGTGTAAGACCAGGTCTGAG
ACATGGCTTCGGCCTCATTGAGATAGTCAAC
Found at i:80175423 original size:15 final size:16
Alignment explanation
Indices: 80175393--80175432 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
80175383 GCATCGTATT
80175393 TTGGATTTC-TCTATC
1 TTGGATTTCTTCTATC
80175408 TTGGATTTCTTC-ATC
1 TTGGATTTCTTCTATC
*
80175423 -TGGGTTTCTT
1 TTGGATTTCTT
80175433 TGTCATCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 9 0.39
15 12 0.52
16 2 0.09
ACGTcount: A:0.10, C:0.17, G:0.17, T:0.55
Consensus pattern (16 bp):
TTGGATTTCTTCTATC
Found at i:80175827 original size:57 final size:58
Alignment explanation
Indices: 80175759--80175872 Score: 133
Period size: 60 Copynumber: 1.9 Consensus size: 58
80175749 GGTAAATTTG
* * * *
80175759 TACTTATTTTAA-ATC-TTCATGTATTATTCATTTTAAATTTTTATTTTATTTTATTAC
1 TACTTATTTTAATATCTTTCATATATTATT-ATTTTAAAATATTATATTATTTTATTAC
* *
80175816 TACTTGTTTTAAGTTTTCTTTCATATATTATTATTTTAAAATATTATATTATTTTAT
1 TACTTATTTTAA--TATCTTTCATATATTATTATTTTAAAATATTATATTATTTTAT
80175873 CTTAAATTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
57 11 0.23
60 24 0.51
61 12 0.26
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (58 bp):
TACTTATTTTAATATCTTTCATATATTATTATTTTAAAATATTATATTATTTTATTAC
Found at i:80175886 original size:60 final size:60
Alignment explanation
Indices: 80175774--80175887 Score: 133
Period size: 60 Copynumber: 1.9 Consensus size: 60
80175764 ATTTTAAATC
* * * * * *
80175774 TTCATGTATTATTCATTTTAAATTTTTATTTTATTTTATTACTACTTGTTTTAAGTTTTCT
1 TTCATATATTATTCATTTTAAAATATTATATTATTTTATTAC-AATTATTTTAAGTTTTCT
80175835 TTCATATATTATT-ATTTTAAAATATTATATTATTTTATCTTA-AATTATTTTAA
1 TTCATATATTATTCATTTTAAAATATTATATTATTTTA--TTACAATTATTTTAA
80175888 ATAGTATTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
60 30 0.67
61 12 0.27
62 3 0.07
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (60 bp):
TTCATATATTATTCATTTTAAAATATTATATTATTTTATTACAATTATTTTAAGTTTTCT
Found at i:80175992 original size:22 final size:22
Alignment explanation
Indices: 80175967--80176024 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
80175957 TTACTATATA
80175967 TATATTATTATTTTAAACTT-TT
1 TATATTATTATTTTAAA-TTCTT
80175989 TATATTATTTATTTTAAATTGCTT
1 TATATTA-TTATTTTAAATT-CTT
80176013 TATA-TATTATTT
1 TATATTATTATTT
80176025 ACTTCATCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
22 15 0.45
23 12 0.36
24 6 0.18
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (22 bp):
TATATTATTATTTTAAATTCTT
Found at i:80175992 original size:26 final size:26
Alignment explanation
Indices: 80175838--80176023 Score: 74
Period size: 26 Copynumber: 7.4 Consensus size: 26
80175828 GTTTTCTTTC
* *
80175838 ATATATTATTATTTTAAAAT-ATTAT
1 ATATATTATTATTTTAAATTGCTTAT
* * *
80175863 AT-TATT-TTATCTTAAATT-ATTTT
1 ATATATTATTATTTTAAATTGCTTAT
* * * * * *
80175886 AAATAGTATTTATTTCAAACTGTTTTT
1 ATATATTA-TTATTTTAAATTGCTTAT
* *
80175913 AT-TATATACTATTTTTAAATTG-TT-G
1 ATATAT-TATTA-TTTTAAATTGCTTAT
* *
80175938 ATATATTATT-TGCTTTAAGTTACTATAT
1 ATATATTATTAT--TTTAAATTGCT-TAT
80175966 ATATATTATTATTTTAAA---CTT-T
1 ATATATTATTATTTTAAATTGCTTAT
*
80175988 TTATATTATTTATTTTAAATTGCTT-T
1 ATATATTA-TTATTTTAAATTGCTTAT
80176014 ATATATTATT
1 ATATATTATT
80176024 TACTTCATCT
Statistics
Matches: 122, Mismatches: 22, Indels: 34
0.69 0.12 0.19
Matches are distributed among these distances:
22 8 0.07
23 27 0.22
24 9 0.07
25 16 0.13
26 30 0.25
27 21 0.17
28 10 0.08
29 1 0.01
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (26 bp):
ATATATTATTATTTTAAATTGCTTAT
Found at i:80176024 original size:26 final size:26
Alignment explanation
Indices: 80175860--80176025 Score: 96
Period size: 26 Copynumber: 6.4 Consensus size: 26
80175850 TTTAAAATAT
* **
80175860 TATATTATTTTATCTTAAATTATTTTA
1 TATATTA-TTTATTTTAAATTGCTTTA
* * * *
80175887 AATAGTATTTATTTCAAACTG-TTT-
1 TATATTATTTATTTTAAATTGCTTTA
*
80175911 T-TATTATATACTATTTTTAAATTG-TTGA
1 TATATTAT-T--TA-TTTTAAATTGCTTTA
** * *
80175939 TATATTATTTGCTTTAAGTTACTATATA
1 TATATTATTTATTTTAAATTGCT-T-TA
*
80175967 TATATTA-TTATTTTAAA---CTTTT
1 TATATTATTTATTTTAAATTGCTTTA
80175989 TATATTATTTATTTTAAATTGCTTTA
1 TATATTATTTATTTTAAATTGCTTTA
80176015 TATATTATTTA
1 TATATTATTTA
80176026 CTTCATCTTT
Statistics
Matches: 105, Mismatches: 21, Indels: 27
0.69 0.14 0.18
Matches are distributed among these distances:
22 8 0.08
23 16 0.15
24 3 0.03
25 10 0.10
26 29 0.28
27 23 0.22
28 10 0.10
29 6 0.06
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.58
Consensus pattern (26 bp):
TATATTATTTATTTTAAATTGCTTTA
Found at i:80177026 original size:20 final size:20
Alignment explanation
Indices: 80177001--80177042 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
80176991 AAACACTAGA
80177001 CTCAGTCTATTTAGAATATT
1 CTCAGTCTATTTAGAATATT
80177021 CTCAGTCTATTTAGAATATT
1 CTCAGTCTATTTAGAATATT
80177041 CT
1 CT
80177043 TTGAAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.17, G:0.10, T:0.45
Consensus pattern (20 bp):
CTCAGTCTATTTAGAATATT
Found at i:80181230 original size:148 final size:150
Alignment explanation
Indices: 80180960--80181259 Score: 471
Period size: 148 Copynumber: 2.0 Consensus size: 150
80180950 AATTTTAGAC
* * * * **
80180960 AACAAGTGCTATCACTGATGTGAGTAAAAAAATATGCAAACTATATTTCTTAAAATTTTGTATAA
1 AACAAGTGCTATCAATGATATGAGTAAAAAAATATGCAAAATATATTTATTAAAATTTCATATAA
*
80181025 AAAATTAAAAGATTATGAATCATAATATTATAAGTTTAAATCTTATCATAAATTATTTTTATTAA
66 AAAATTAAAAGATTATGAATCATAATATTATAAGTTTAAATCTTACCATAAATTATTTTTATTAA
80181090 TTTTATAAATAAATATAAAA
131 TTTTATAAATAAATATAAAA
* *
80181110 AACAAGTGCTAT-AGATGATATGAGTAAAAAATTATGTAAAATATATTTATTAAAATTTCATAT-
1 AACAAGTGCTATCA-ATGATATGAGTAAAAAAATATGCAAAATATATTTATTAAAATTTCATATA
*
80181173 AAAAA-TAAAAGATTATGAATCATAATATTATAAGTTTAAATCTTACCATAATTTATTTTTATTA
65 AAAAATTAAAAGATTATGAATCATAATATTATAAGTTTAAATCTTACCATAAATTATTTTTATTA
*
80181237 ATTTTATATATAAATATAAAA
130 ATTTTATAAATAAATATAAAA
80181258 AA
1 AA
80181260 AATTTCCTAA
Statistics
Matches: 138, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
148 79 0.57
149 6 0.04
150 53 0.38
ACGTcount: A:0.48, C:0.06, G:0.07, T:0.39
Consensus pattern (150 bp):
AACAAGTGCTATCAATGATATGAGTAAAAAAATATGCAAAATATATTTATTAAAATTTCATATAA
AAAATTAAAAGATTATGAATCATAATATTATAAGTTTAAATCTTACCATAAATTATTTTTATTAA
TTTTATAAATAAATATAAAA
Found at i:80181256 original size:75 final size:75
Alignment explanation
Indices: 80181026--80181257 Score: 210
Period size: 75 Copynumber: 3.1 Consensus size: 75
80181016 TTTGTATAAA
* *
80181026 AAAT-TAAAAGATTATGAATCATAATATTATAAGTTTAAATCTTATCATAAATTATTTTTATTAA
1 AAATATAAAAGATTATGAATCATAATATTATAAGTTTAAATCTTACCATAATTTATTTTTATTAA
*
80181090 TTTTATAAAT
66 TTTTATATAT
* ** * * * ** ** * *
80181100 AAATATAAAAAACAAGTG-CT-ATAGATGA-TATGAG-TAAAAAATTATGTAAAATATATTTATT
1 AAATATAAAAGATTA-TGAATCATA-AT-ATTATAAGTTTAAATCTTA-CCATAATTTATTT-TT
* *
80181161 A-AAATTTCATATA-
61 ATTAATTTTATATAT
80181174 AAA-ATAAAAGATTATGAATCATAATATTATAAGTTTAAATCTTACCATAATTTATTTTTATTAA
1 AAATATAAAAGATTATGAATCATAATATTATAAGTTTAAATCTTACCATAATTTATTTTTATTAA
80181238 TTTTATATAT
66 TTTTATATAT
80181248 AAATATAAAA
1 AAATATAAAA
80181258 AAAATTTCCT
Statistics
Matches: 115, Mismatches: 30, Indels: 25
0.68 0.18 0.15
Matches are distributed among these distances:
72 6 0.05
73 35 0.30
74 30 0.26
75 38 0.33
76 6 0.05
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.41
Consensus pattern (75 bp):
AAATATAAAAGATTATGAATCATAATATTATAAGTTTAAATCTTACCATAATTTATTTTTATTAA
TTTTATATAT
Found at i:80182103 original size:50 final size:50
Alignment explanation
Indices: 80182049--80182151 Score: 170
Period size: 50 Copynumber: 2.1 Consensus size: 50
80182039 TAGGGCATTA
** *
80182049 TTTATCATTATGTTTATGGCTTTATAGCTTTTACTTCTTTCTTGTATTTG
1 TTTATCATTATGTCCATGGCTTGATAGCTTTTACTTCTTTCTTGTATTTG
*
80182099 TTTATCATTATGTCCATGGCTTGATAGTTTTTACTTCTTTCTTGTATTTG
1 TTTATCATTATGTCCATGGCTTGATAGCTTTTACTTCTTTCTTGTATTTG
80182149 TTT
1 TTT
80182152 GTTCTACCTA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.16, C:0.13, G:0.13, T:0.59
Consensus pattern (50 bp):
TTTATCATTATGTCCATGGCTTGATAGCTTTTACTTCTTTCTTGTATTTG
Found at i:80185696 original size:14 final size:14
Alignment explanation
Indices: 80185677--80185703 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80185667 ACTTAATCAA
80185677 TAAAATTTTCATAT
1 TAAAATTTTCATAT
80185691 TAAAATTTTCATA
1 TAAAATTTTCATA
80185704 CATCATTCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (14 bp):
TAAAATTTTCATAT
Found at i:80186910 original size:16 final size:16
Alignment explanation
Indices: 80186889--80186919 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
80186879 GAATGGAACA
80186889 ACATTGCAACTAGTAC
1 ACATTGCAACTAGTAC
80186905 ACATTGCAACTAGTA
1 ACATTGCAACTAGTA
80186920 TTTTGAGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (16 bp):
ACATTGCAACTAGTAC
Found at i:80187280 original size:17 final size:17
Alignment explanation
Indices: 80187258--80187292 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
80187248 ACCAAGGTTC
*
80187258 ATTATTAGGTAAAATTT
1 ATTATTAAGTAAAATTT
80187275 ATTATTAAGTAAAATTT
1 ATTATTAAGTAAAATTT
80187292 A
1 A
80187293 CTTTGATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (17 bp):
ATTATTAAGTAAAATTT
Found at i:80187775 original size:96 final size:96
Alignment explanation
Indices: 80187600--80187788 Score: 220
Period size: 96 Copynumber: 2.0 Consensus size: 96
80187590 TTTTCAGCTA
* * * * * * *
80187600 CCAACATTGTTATCTCTGATTTTTCTATTCTGAGTATAATGTTGATTTCCATTGCCTAGTATTCT
1 CCAAAATTGTTATCTCCGATTTTTCTATTCTGAGCACAAAGCTAATTTCCATTGCCTAGTATTCT
** *
80187665 ACTGTCCTAAACTCCATGCTGTGTCTTTGTG
66 ACTGAACTAAACTCCATACTGTGTCTTTGTG
*
80187696 CCAAAATTGTTATCTCCGATTTTTCTATTCTGAGCACAAAGCTAATTTTTCCATTG-CTTGTATT
1 CCAAAATTGTTATCTCCGATTTTTCTATTCTGAGCACAAAGCTAA--TTTCCATTGCCTAGTATT
** *
80187760 CTACT-AACTTGACTCCATATTGTGTCTTT
64 CTACTGAACTAAACTCCATACTGTGTCTTT
80187789 ATCACCATAT
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
96 56 0.73
97 12 0.16
98 9 0.12
ACGTcount: A:0.22, C:0.21, G:0.13, T:0.44
Consensus pattern (96 bp):
CCAAAATTGTTATCTCCGATTTTTCTATTCTGAGCACAAAGCTAATTTCCATTGCCTAGTATTCT
ACTGAACTAAACTCCATACTGTGTCTTTGTG
Found at i:80189793 original size:24 final size:26
Alignment explanation
Indices: 80189765--80189821 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 26
80189755 AATCATTTTC
*
80189765 TTCTTTCTAATGA-TTTGA-TTTTAA
1 TTCTTTCAAATGACTTTGATTTTTAA
* *
80189789 TTCTTTCAAATGACTTTTATTTTTTA
1 TTCTTTCAAATGACTTTGATTTTTAA
80189815 TTCTTTC
1 TTCTTTC
80189822 CTATTTCAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 12 0.43
25 4 0.14
26 12 0.43
ACGTcount: A:0.21, C:0.12, G:0.05, T:0.61
Consensus pattern (26 bp):
TTCTTTCAAATGACTTTGATTTTTAA
Found at i:80192031 original size:20 final size:20
Alignment explanation
Indices: 80192006--80192056 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
80191996 GCAAGTCCAT
80192006 AATATCACATTAAATAATTC
1 AATATCACATTAAATAATTC
**
80192026 AATATCACATTTCATAATTC
1 AATATCACATTAAATAATTC
80192046 AATATCACATT
1 AATATCACATT
80192057 CACCTCAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.37
Consensus pattern (20 bp):
AATATCACATTAAATAATTC
Found at i:80197542 original size:39 final size:38
Alignment explanation
Indices: 80197494--80197578 Score: 125
Period size: 39 Copynumber: 2.2 Consensus size: 38
80197484 ACATGATAAG
* * *
80197494 CATGTCTACTGTTATTGATGAATTGAGTACATGTTAAAA
1 CATGTCTACTGTTATTAACGAATTGAGTACACGTT-AAA
*
80197533 CATGTCTACTGTTATTAACGAATTGAGTACACGTTATA
1 CATGTCTACTGTTATTAACGAATTGAGTACACGTTAAA
80197571 CATGTCTA
1 CATGTCTA
80197579 TTTCTAATGT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
38 10 0.24
39 32 0.76
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (38 bp):
CATGTCTACTGTTATTAACGAATTGAGTACACGTTAAA
Found at i:80197805 original size:43 final size:43
Alignment explanation
Indices: 80197724--80197810 Score: 97
Period size: 43 Copynumber: 2.0 Consensus size: 43
80197714 CTATTAACTG
**
80197724 CAAATATGTTGTACATTCACAACCCATCGACAGCTTTTACCTA
1 CAAATATGTTGTACATTCACAACCCATCGACAAATTTTACCTA
* * *
80197767 CAAATATGTTGTGCA-TCTACAACCCAAT-GGCAAATTTTATCTA
1 CAAATATGTTGTACATTC-ACAACCC-ATCGACAAATTTTACCTA
80197810 C
1 C
80197811 GATATTTTGC
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
42 2 0.05
43 33 0.89
44 2 0.05
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.31
Consensus pattern (43 bp):
CAAATATGTTGTACATTCACAACCCATCGACAAATTTTACCTA
Found at i:80197893 original size:45 final size:44
Alignment explanation
Indices: 80197776--80197935 Score: 146
Period size: 44 Copynumber: 3.6 Consensus size: 44
80197766 ACAAATATGT
* * * * * *
80197776 TGTGCATCTACAACCCAATGGCAAATTTTATCTACGATATTTTGC
1 TGTGTATCCACAACCTAGTGGCAATTTTTATCTGCGA-ATTTTGC
* * *
80197821 TATGTATTCACAATCC-AGTGGAAATTTTTATCTGCGAATTTTGC
1 TGTGTATCCACAA-CCTAGTGGCAATTTTTATCTGCGAATTTTGC
* * *
80197865 TGTGTATCCACAACCTAGTGGCAGA-TTTTATCTGTGAATCTTAC
1 TGTGTATCCACAACCTAGTGGCA-ATTTTTATCTGCGAATTTTGC
*
80197909 TGTGCA-CTCACAACCTAGTGGCAATTT
1 TGTGTATC-CACAACCTAGTGGCAATTT
80197936 ATTGGCAAAC
Statistics
Matches: 95, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
43 4 0.04
44 62 0.65
45 27 0.28
46 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (44 bp):
TGTGTATCCACAACCTAGTGGCAATTTTTATCTGCGAATTTTGC
Found at i:80200704 original size:31 final size:31
Alignment explanation
Indices: 80200640--80200717 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 31
80200630 TAGTGACTCC
* * * ** *
80200640 AAACTTTTGAATAGTTCAGTGACTTAAATGA
1 AAACTTTCGAATAGTTCAATAACCAAAACGA
80200671 AAACTTTCGAATAGTTCAATAACCAAAACGA
1 AAACTTTCGAATAGTTCAATAACCAAAACGA
* *
80200702 AAACTTACAAATAGTT
1 AAACTTTCGAATAGTT
80200718 TAGTGACTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.29
Consensus pattern (31 bp):
AAACTTTCGAATAGTTCAATAACCAAAACGA
Found at i:80203950 original size:49 final size:49
Alignment explanation
Indices: 80203890--80204010 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
80203880 GATAATTGTG
80203890 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
80203937 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
80203986 ATGTGAAAGTGTATATATGTGTGAT
1 ATGTGAAAGTGTATATATATGTGAT
80204011 GAATGTGAAA
Statistics
Matches: 71, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
47 5 0.07
48 2 0.03
49 64 0.90
ACGTcount: A:0.32, C:0.07, G:0.28, T:0.33
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:80204013 original size:27 final size:27
Alignment explanation
Indices: 80203977--80204037 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
80203967 CTAATGGCCG
80203977 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
*
80204004 GTGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
80204031 ATGTGAT
1 ATGTGAT
80204038 AAGGCCTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.28, T:0.38
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTATATAT
Found at i:80204015 original size:76 final size:76
Alignment explanation
Indices: 80203929--80204082 Score: 308
Period size: 76 Copynumber: 2.0 Consensus size: 76
80203919 TAATGGCCGA
80203929 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
80203994 GTGTATATATG
66 GTGTATATATG
80204005 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
80204070 GTGTATATATG
66 GTGTATATATG
80204081 TG
1 TG
80204083 ATGAGGCCTA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 78 1.00
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.33
Consensus pattern (76 bp):
TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTATATATG
Done.