Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 236 of 373
Found at i:80204095 original size:47 final size:47
Alignment explanation
Indices: 80204005--80204181 Score: 248
Period size: 47 Copynumber: 3.7 Consensus size: 47
80203995 TGTATATATG
80204005 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
1 TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGA
*
80204054 TGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGA
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
* * * *
80204101 TGTGATGAATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAA
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGA
* * *
80204148 CGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAG
80204182 TCCCGAAGGG
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
46 2 0.02
47 94 0.80
48 2 0.02
49 19 0.16
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
Found at i:80206493 original size:40 final size:40
Alignment explanation
Indices: 80206441--80206895 Score: 387
Period size: 40 Copynumber: 11.1 Consensus size: 40
80206431 AGGTCTCGAC
*
80206441 GATG-ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
* *
80206480 GATGTATCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
*
80206520 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
* * *
80206560 GATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
* * * * *
80206600 GTTGTATCCGGACTAAGTTCCGACCG-GACTAAGTTCGAAGAGCATTCGT
1 GATGTATCCGGGCTAAGTTCCGA-AGAG-C--A-TTC--A-TGC--TAGT
* ***** * *
80206649 GCTAGTGATATATCCGGGCTAA-TCCCGAAGAGCATTCGTGCTAGT
1 GAT-GT-ATCCGGGC----TAAGTTCCGAAGAGCATTCATGCTAGT
* * *
80206694 GTTGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
* * * *
80206734 GATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
* *
80206774 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
* * * *
80206814 GATATATCCGTGCTAAGTTCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
* * * * *
80206854 GTTATATCCGGGCT-AGGTCCTGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTTCC-GAAGAGCATTCATGCTAGT
80206894 GA
1 GA
80206896 CGTGTATTCA
Statistics
Matches: 345, Mismatches: 51, Indels: 39
0.79 0.12 0.09
Matches are distributed among these distances:
39 12 0.03
40 288 0.83
41 2 0.01
43 4 0.01
44 5 0.01
45 5 0.01
47 4 0.01
49 5 0.01
50 5 0.01
51 4 0.01
53 2 0.01
54 6 0.02
55 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
Found at i:80206703 original size:94 final size:95
Alignment explanation
Indices: 80206540--80206716 Score: 302
Period size: 94 Copynumber: 1.9 Consensus size: 95
80206530 GGCTAAGTCC
* * *
80206540 CGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCTAGTGTTGT
1 CGAAGAGCATTCATGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGTTGT
80206605 ATCCGGACTAAGTTCCGACCGGACTAAGTT
66 ATCCGGACTAAGTTCCGACCGGACTAAGTT
* *
80206635 CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAA-TCCCGAAGAGCATTCGTGCTAGTGTTGT
1 CGAAGAGCATTCATGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGTTGT
80206699 ATCCGGACTAAGTTCCGA
66 ATCCGGACTAAGTTCCGA
80206717 AGAGCATTCG
Statistics
Matches: 77, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
94 44 0.57
95 33 0.43
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (95 bp):
CGAAGAGCATTCATGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGTTGT
ATCCGGACTAAGTTCCGACCGGACTAAGTT
Found at i:80206832 original size:214 final size:215
Alignment explanation
Indices: 80206445--80206836 Score: 653
Period size: 214 Copynumber: 1.8 Consensus size: 215
80206435 CTCGACGATG
* * *
80206445 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCTGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCAT
* *
80206510 TCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTA
66 TCATGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTA
* * *
80206575 AGTTCTGAAGAGCATTCGTGCTAGTGTTGTATCCGGACTAAGTTCCGACCGGACTAAGTTCGAAG
131 AGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTCCGACCGGACTAAGTTCGAAG
80206640 AGCATTCGTGCTAGTGATAT
196 AGCATTCGTGCTAGTGATAT
* *
80206660 ATCCGGGCTAA-TCCCGAAGAGCATTCGTGCTAGTGTTGTATCCGGACTAAGTTCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCAT
* *
80206724 TCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTA
66 TCATGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTA
80206789 AGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTG-CTAAGTTCCGA
131 AGTTCCGAAGAGCATTCGTGCTAGTGATATATCCG-GACTAAGTTCCGA
80206837 AGAGCATTCG
Statistics
Matches: 164, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
214 152 0.93
215 12 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (215 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCAT
TCATGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTA
AGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTCCGACCGGACTAAGTTCGAAG
AGCATTCGTGCTAGTGATAT
Found at i:80210535 original size:49 final size:49
Alignment explanation
Indices: 80210475--80210691 Score: 379
Period size: 49 Copynumber: 4.5 Consensus size: 49
80210465 GATAATTGTG
80210475 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
80210522 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
80210569 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
80210618 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
80210667 ATGTGAAAGTGTATATATGTGTGAT
1 ATGTGAAAGTGTATATATATGTGAT
80210692 GAATGTGAAA
Statistics
Matches: 161, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
47 50 0.31
48 2 0.01
49 109 0.68
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:80210690 original size:76 final size:76
Alignment explanation
Indices: 80210610--80210763 Score: 308
Period size: 76 Copynumber: 2.0 Consensus size: 76
80210600 TAATGGCCGA
80210610 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
80210675 GTGTATATATG
66 GTGTATATATG
80210686 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
80210751 GTGTATATATG
66 GTGTATATATG
80210762 TG
1 TG
80210764 ATGAGGCCTA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 78 1.00
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.33
Consensus pattern (76 bp):
TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTATATATG
Found at i:80210694 original size:27 final size:27
Alignment explanation
Indices: 80210658--80210718 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
80210648 CTAATGGCCG
80210658 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
*
80210685 GTGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
80210712 ATGTGAT
1 ATGTGAT
80210719 AAGGCCTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.28, T:0.38
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTATATAT
Found at i:80210698 original size:125 final size:123
Alignment explanation
Indices: 80210561--80210810 Score: 473
Period size: 125 Copynumber: 2.0 Consensus size: 123
80210551 GAATGGCCAA
80210561 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
80210626 GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
66 GTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
80210686 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
80210751 GTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
66 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
80210809 TG
1 TG
80210811 ACAGAGCCGA
Statistics
Matches: 124, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
123 56 0.45
125 68 0.55
ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32
Consensus pattern (123 bp):
TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:80210776 original size:47 final size:47
Alignment explanation
Indices: 80210686--80210862 Score: 248
Period size: 47 Copynumber: 3.7 Consensus size: 47
80210676 TGTATATATG
80210686 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
1 TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGA
*
80210735 TGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGA
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
* * * *
80210782 TGTGATGAATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAA
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGA
* * *
80210829 CGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAG
80210863 TCCCGAAGGG
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
46 2 0.02
47 94 0.80
48 2 0.02
49 19 0.16
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
Found at i:80215403 original size:18 final size:19
Alignment explanation
Indices: 80215382--80215432 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
80215372 ATTTCCTTTA
* *
80215382 AAATATTAAAAAAATCT-T
1 AAATATTAAAAAAACCTAG
80215400 AAATATTAACAAAAACCTAG
1 AAATATTAA-AAAAACCTAG
80215420 AAATATTAAAAAA
1 AAATATTAAAAAA
80215433 TACAAAGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 9 0.31
19 11 0.38
20 9 0.31
ACGTcount: A:0.65, C:0.08, G:0.02, T:0.25
Consensus pattern (19 bp):
AAATATTAAAAAAACCTAG
Found at i:80215441 original size:20 final size:20
Alignment explanation
Indices: 80215400--80215441 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
80215390 AAAAAATCTT
**
80215400 AAATATTAACAAAAACCTAG
1 AAATATTAACAAAAACAAAG
80215420 AAATATTAA-AAAATACAAAG
1 AAATATTAACAAAA-ACAAAG
80215440 AA
1 AA
80215442 TTCTCTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.67, C:0.10, G:0.05, T:0.19
Consensus pattern (20 bp):
AAATATTAACAAAAACAAAG
Found at i:80215752 original size:7 final size:7
Alignment explanation
Indices: 80215742--80215767 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
80215732 TCAATTTTCC
80215742 ATTTTGA
1 ATTTTGA
80215749 ATTTTGA
1 ATTTTGA
80215756 ATTTTGA
1 ATTTTGA
80215763 ATTTT
1 ATTTT
80215768 TTTGTAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.62
Consensus pattern (7 bp):
ATTTTGA
Found at i:80215753 original size:14 final size:14
Alignment explanation
Indices: 80215734--80215767 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
80215724 ATAAATTCTC
*
80215734 AATTTTCCATTTTG
1 AATTTTCAATTTTG
*
80215748 AATTTTGAATTTTG
1 AATTTTCAATTTTG
80215762 AATTTT
1 AATTTT
80215768 TTTGTAACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.26, C:0.06, G:0.09, T:0.59
Consensus pattern (14 bp):
AATTTTCAATTTTG
Found at i:80216991 original size:29 final size:27
Alignment explanation
Indices: 80216947--80217012 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 27
80216937 TTTTAATTTT
80216947 AATTTTTTTCAATTTTCT-AAAATTTAA
1 AATTTTTTTCAATTTT-TAAAAATTTAA
* *
80216974 ATATTTTTTTCCATTTTTTACAAAATTTTA
1 A-ATTTTTTT-CAATTTTTA-AAAATTTAA
80217004 AATTTTTTT
1 AATTTTTTT
80217013 GAAAATGTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 1 0.03
28 9 0.27
29 14 0.42
30 9 0.27
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.61
Consensus pattern (27 bp):
AATTTTTTTCAATTTTTAAAAATTTAA
Found at i:80216999 original size:30 final size:27
Alignment explanation
Indices: 80216947--80217012 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 27
80216937 TTTTAATTTT
80216947 AATTTTTTTCAATTTTCTAAAATTTAA
1 AATTTTTTTCAATTTTCTAAAATTTAA
* * *
80216974 ATATTTTTTTCCATTTTTTACAAAATTTTA
1 A-ATTTTTTTCAATTTTCT--AAAATTTAA
80217004 AATTTTTTT
1 AATTTTTTT
80217013 GAAAATGTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 1 0.03
28 15 0.45
29 8 0.24
30 9 0.27
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.61
Consensus pattern (27 bp):
AATTTTTTTCAATTTTCTAAAATTTAA
Found at i:80219817 original size:22 final size:24
Alignment explanation
Indices: 80219773--80219817 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
80219763 TCCTTAATAT
*
80219773 TTATATTTTTTATTAATTTAATTC
1 TTATATTTTTTATTAATTAAATTC
*
80219797 TTAT-TTTTTTA-TAGTTAAATT
1 TTATATTTTTTATTAATTAAATT
80219818 TAACCATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
23 7 0.37
24 4 0.21
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (24 bp):
TTATATTTTTTATTAATTAAATTC
Found at i:80221441 original size:166 final size:166
Alignment explanation
Indices: 80221167--80221500 Score: 632
Period size: 166 Copynumber: 2.0 Consensus size: 166
80221157 GCAGTAGGAA
80221167 TGCTTCTTCTAACAAAGATGGCTTGTTGTTAGACATCTAGAATTACAGTCTTACATTTTTCCTTC
1 TGCTTCTTCTAACAAAGATGGCTTGTTGTTAGACATCTAGAATTACAGTCTTACATTTTTCCTTC
* *
80221232 AACGTTAGACGATGTAAACAATTGAAATAGTAGTATGACTACTTGTGGTTGGATTATGAATGGGA
66 AACGTTAGACGACGTAAACAATTGAAATAGTAGCATGACTACTTGTGGTTGGATTATGAATGGGA
80221297 ATGGAGCGGGGTCAAGCTTCATGTTTGCATTAATGT
131 ATGGAGCGGGGTCAAGCTTCATGTTTGCATTAATGT
*
80221333 TGCTTCTTCTAACAAAGATGGCTTGTTGTTAGACTTCTAGAATTACAGTCTTACATTTTTCCTTC
1 TGCTTCTTCTAACAAAGATGGCTTGTTGTTAGACATCTAGAATTACAGTCTTACATTTTTCCTTC
*
80221398 AACGTTAGACGACGTAAACAATTGAAATAGTGGCATGACTACTTGTGGTTGGATTATGAATGGGA
66 AACGTTAGACGACGTAAACAATTGAAATAGTAGCATGACTACTTGTGGTTGGATTATGAATGGGA
80221463 ATGGAGCGGGGTCAAGCTTCATGTTTGCATTAATGT
131 ATGGAGCGGGGTCAAGCTTCATGTTTGCATTAATGT
80221499 TG
1 TG
80221501 GTTTTATTCA
Statistics
Matches: 164, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
166 164 1.00
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (166 bp):
TGCTTCTTCTAACAAAGATGGCTTGTTGTTAGACATCTAGAATTACAGTCTTACATTTTTCCTTC
AACGTTAGACGACGTAAACAATTGAAATAGTAGCATGACTACTTGTGGTTGGATTATGAATGGGA
ATGGAGCGGGGTCAAGCTTCATGTTTGCATTAATGT
Found at i:80225688 original size:21 final size:21
Alignment explanation
Indices: 80225664--80225742 Score: 70
Period size: 21 Copynumber: 3.8 Consensus size: 21
80225654 GTCCCTGGCC
80225664 CACACGGGCGTGTGCCTCAGT
1 CACACGGGCGTGTGCCTCAGT
* **
80225685 CACAC-GGTGTGTGCCTCCTTT
1 CACACGGGCGTGTGCCT-CAGT
** *
80225706 CACACGGATGTATGCCTCAGT
1 CACACGGGCGTGTGCCTCAGT
* *
80225727 CACATGGCCGTGTGCC
1 CACACGGGCGTGTGCC
80225743 CCTCTTCACA
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
20 10 0.22
21 26 0.58
22 9 0.20
ACGTcount: A:0.15, C:0.33, G:0.28, T:0.24
Consensus pattern (21 bp):
CACACGGGCGTGTGCCTCAGT
Found at i:80225711 original size:42 final size:43
Alignment explanation
Indices: 80225664--80225757 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 43
80225654 GTCCCTGGCC
* * *
80225664 CACACGGGCGTGTGCCTCAGTCACACGG-TGTGTGCCTCCT-TT
1 CACACGGACGTATGCCTCAGTCACACGGCCGTGTGCC-CCTCTT
* *
80225706 CACACGGATGTATGCCTCAGTCACATGGCCGTGTGCCCCTCTT
1 CACACGGACGTATGCCTCAGTCACACGGCCGTGTGCCCCTCTT
*
80225749 CACATGGAC
1 CACACGGAC
80225758 TTTTGACCTC
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
42 27 0.63
43 16 0.37
ACGTcount: A:0.16, C:0.34, G:0.26, T:0.24
Consensus pattern (43 bp):
CACACGGACGTATGCCTCAGTCACACGGCCGTGTGCCCCTCTT
Found at i:80227024 original size:25 final size:25
Alignment explanation
Indices: 80226996--80227047 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
80226986 CACAAAAGAA
*
80226996 TATTATATCTTTTTATAATCAATGC
1 TATTATATCTTTTCATAATCAATGC
80227021 TATTATATCTTTTCATAATCAATGC
1 TATTATATCTTTTCATAATCAATGC
80227046 TA
1 TA
80227048 GGACTTCGCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.13, G:0.04, T:0.50
Consensus pattern (25 bp):
TATTATATCTTTTCATAATCAATGC
Found at i:80229441 original size:93 final size:93
Alignment explanation
Indices: 80229282--80229454 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
80229272 CCGCCCATAA
* * * *
80229282 ACGAACTCGGACTCAACTCATCGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTC
1 ACGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
80229347 AACGAGTTCGGATGCCTAGTTACATCTC
66 AACGAGTTCGGATGCCTAGTTACATCTC
* *
80229375 ACGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTC
1 ACGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
80229440 AACGAGTTCGGATGC
66 AACGAGTTCGGATGC
80229455 TCAACCATCC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
ACGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
AACGAGTTCGGATGCCTAGTTACATCTC
Found at i:80229444 original size:46 final size:46
Alignment explanation
Indices: 80229284--80229451 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 46
80229274 GCCCATAAAC
* * * * * *
80229284 GAACTCGGACTCAACTCATCGAGCTCGGGCGTTCGCATCCATGAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
* * * *
80229330 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCATAAGT
80229377 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
80229423 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
80229452 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 55 0.54
47 29 0.28
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGT
Found at i:80229470 original size:46 final size:46
Alignment explanation
Indices: 80229327--80229463 Score: 133
Period size: 47 Copynumber: 3.0 Consensus size: 46
80229317 CGCATCCATG
80229327 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCTC
* * * *
80229375 A-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCA--TA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCTC
80229420 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
80229464 CTAGTGACAT
Statistics
Matches: 73, Mismatches: 7, Indels: 20
0.73 0.07 0.20
Matches are distributed among these distances:
44 7 0.10
45 3 0.04
46 28 0.38
47 30 0.41
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTC
Found at i:80235636 original size:6 final size:6
Alignment explanation
Indices: 80235625--80235652 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
80235615 TGTCGAGGTT
80235625 GAGAAA GAGAAA GAGAAA GAGAAA GAGA
1 GAGAAA GAGAAA GAGAAA GAGAAA GAGA
80235653 CCAAAGTACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (6 bp):
GAGAAA
Found at i:80240627 original size:32 final size:32
Alignment explanation
Indices: 80240590--80240653 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
80240580 AAAGATTGGG
80240590 AATAAGAACCATAATCCATTCTGAGATTGAAT
1 AATAAGAACCATAATCCATTCTGAGATTGAAT
80240622 AATAAGAACCATAATCCATTCTGAGATTGAAT
1 AATAAGAACCATAATCCATTCTGAGATTGAAT
80240654 CTTACTTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (32 bp):
AATAAGAACCATAATCCATTCTGAGATTGAAT
Found at i:80241656 original size:12 final size:13
Alignment explanation
Indices: 80241638--80241667 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
80241628 AGAGCAGTAG
80241638 TAAATAAAAATAA
1 TAAATAAAAATAA
80241651 -AAATAAAAATAA
1 TAAATAAAAATAA
80241663 TAAAT
1 TAAAT
80241668 TTAATATAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
TAAATAAAAATAA
Found at i:80244083 original size:16 final size:16
Alignment explanation
Indices: 80244064--80244094 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80244054 CTTCTTCACT
80244064 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
80244080 TACTTACTTACTTAA
1 TACTCACTTACTTAA
80244095 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:80244100 original size:20 final size:20
Alignment explanation
Indices: 80244061--80244100 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
80244051 AAACTTCTTC
* *
80244061 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
80244081 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
80244101 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:80244211 original size:23 final size:24
Alignment explanation
Indices: 80244173--80244217 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
80244163 TTTTCTCTTC
*
80244173 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
80244197 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
80244218 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:80244475 original size:55 final size:54
Alignment explanation
Indices: 80244289--80244540 Score: 211
Period size: 55 Copynumber: 4.8 Consensus size: 54
80244279 TGGGTACCTT
* * * * *
80244289 ACCATTGCCATGACTTGTCATGGTCTTACATG-GTATCCTT---TTA-AAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGAGTATCCTTGCCTTATGAACTC
* *
80244338 ACCATTTCCATGTCTTGACATGGTCTTACATG-GTATCCTTGCCTTATGAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGAGTATCCTTGCCTTATGAACTC
* * *
80244391 ACCAATGCCATGCCTTGGCATGGTCTTACATGAG-A-CCTTTGCCTTATAGTAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGAGTATCC-TTGCCTTAT-G-AACTC
* * * * *
80244446 ATCAATGCCATGTATTGACATGGTCTTACATGA-TTTCGTTGCCTTA-GAAACCTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGAGTATCCTTGCCTTATG-AA-CTC
* * *
80244500 ACCAATTGCCATGCCTTGGCATGGCCTTACATG-GTATCCTT
1 ACCAA-TGCCATGTCTTGACATGGTCTTACATGAGTATCCTT
80244541 AAACCCTAAT
Statistics
Matches: 166, Mismatches: 24, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
49 37 0.22
52 5 0.03
53 45 0.27
54 9 0.05
55 69 0.42
56 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGAGTATCCTTGCCTTATGAACTC
Found at i:80250887 original size:46 final size:46
Alignment explanation
Indices: 80250820--80250945 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
80250810 AACCTGCCCC
* * *
80250820 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
80250866 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
80250912 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80250946 TGCTCAACCA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:80250964 original size:46 final size:45
Alignment explanation
Indices: 80250822--80250964 Score: 146
Period size: 46 Copynumber: 3.1 Consensus size: 45
80250812 CCTGCCCCTA
* ** *
80250822 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCC-T
** **
80250867 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATT-TGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCC-T
*
80250913 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTC-ACCATCCT
80250960 AGTGA
1 AGTGA
80250965 CATGTCACTT
Statistics
Matches: 86, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
46 80 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCCT
Found at i:80255724 original size:43 final size:43
Alignment explanation
Indices: 80255665--80255790 Score: 182
Period size: 43 Copynumber: 3.0 Consensus size: 43
80255655 GCTGGTGAAT
*
80255665 AATATTATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
* *
80255708 GATAATATCAGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
* ** *
80255751 AATGATATCGGGCTTCAAGCCTAGCAGGCGA-AATGCCGGT
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGT
80255791 TAATGAGTTC
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 9 0.12
43 65 0.88
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.23
Consensus pattern (43 bp):
AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
Found at i:80259576 original size:18 final size:19
Alignment explanation
Indices: 80259548--80259591 Score: 63
Period size: 18 Copynumber: 2.3 Consensus size: 19
80259538 CTTTGGCAGA
80259548 ATATAATTTTCATATACA-C
1 ATAT-ATTTTCATATACATC
*
80259567 ATATATTTTCATTTACATC
1 ATATATTTTCATATACATC
80259586 ATATAT
1 ATATAT
80259592 AATTAGTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 12 0.52
19 11 0.48
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.48
Consensus pattern (19 bp):
ATATATTTTCATATACATC
Found at i:80259868 original size:41 final size:42
Alignment explanation
Indices: 80259769--80259915 Score: 181
Period size: 43 Copynumber: 3.5 Consensus size: 42
80259759 CAATGCCAAC
* *
80259769 GTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCATT
1 GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCA-T
* * * *
80259812 GTCTCAGATAGGGTCTTACACG-AATCAAATA-CGATGCCGAT
1 GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCC-AT
*
80259853 ATCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAAT
1 GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCC-AT
*
80259896 GCCCCAGACATGGTCTTACA
1 GTCCCAGACATGGTCTTACA
80259916 TGAGAACACA
Statistics
Matches: 87, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
41 26 0.30
42 17 0.20
43 44 0.51
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAT
Found at i:80263795 original size:37 final size:37
Alignment explanation
Indices: 80263742--80263844 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
80263732 CGAATAGTCC
* *
80263742 CCACACGTAGTTATCGGGTCTTCCCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
80263779 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
80263816 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
80263845 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:80264037 original size:48 final size:48
Alignment explanation
Indices: 80263985--80264217 Score: 412
Period size: 48 Copynumber: 4.9 Consensus size: 48
80263975 ATATACACAC
* * *
80263985 ATCTCCTACATATTTCACACTAGCCATTTGGCTTTACCATATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
80264033 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
80264081 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
80264129 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
80264177 ATCTCATATATATTTCACATTAGCCATTCAGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
80264218 CACATATATA
Statistics
Matches: 179, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 179 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:80272140 original size:47 final size:49
Alignment explanation
Indices: 80272057--80274257 Score: 3488
Period size: 47 Copynumber: 45.5 Consensus size: 49
80272047 GTGTGTATAC
*
80272057 GTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80272104 GTGAAAGTGTATATATATGTGATAAGG-CTAAT-GCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80272151 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80272198 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80272245 ATGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80272292 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
80272341 GTGAAAGTG--TATATATGTGCTAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80272388 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80272437 GTGAAAGTGTATATAAATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80272486 GTGAAAGTGTATATATA--TGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80272533 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80272582 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80272631 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80272678 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGACGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80272725 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGACGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80272774 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80272821 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80272870 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80272917 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80272966 GTGAAAGTG--TATATATGTGATAAGGCCTAATCGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80273013 GTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80273060 GTGAAAGTG--TATATATGTGATAAGGCCTAACGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80273107 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80273154 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80273203 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80273252 GTGAAAGTGTATATATGTGATAATATGTGATAAGGCCTAATGGCCAATGTGATGAAT
1 GTGAAAGTG----TA--T-AT-ATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80273309 GTGAAAGTG--TATATATGTGATATGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80273356 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80273405 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80273454 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80273501 GTGAAAGTGTATATATATGAGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80273550 ATGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80273599 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80273648 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
80273695 GTG-AAG-GTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
80273742 GTGAAAGTG--TATATATGTGTTAAGGCCTATTGGCCGATATGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * *
80273789 GTGAAATGTGATGAATGTGAAAGTGTATATATATGTG-ATAA-GGCCTAATGGCCGATGTGATGA
1 GTGAAA-GTG-T--ATAT-ATA-TGT-GATA-A-G-GCCTAATGGCC--------GATGTGATGA
80273852 AT
48 AT
80273854 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80273903 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80273950 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80273999 GTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80274046 GTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80274093 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80274140 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * *
80274187 GTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAATGTGATGGAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80274234 GTGAAAGTGTATA-A-ATGTGATAAG
1 GTGAAAGTGTATATATATGTGATAAG
80274258 TCCTGAAGGG
Statistics
Matches: 2043, Mismatches: 51, Indels: 120
0.92 0.02 0.05
Matches are distributed among these distances:
45 17 0.01
46 8 0.00
47 1101 0.54
48 14 0.01
49 795 0.39
53 4 0.00
54 2 0.00
55 5 0.00
56 8 0.00
57 53 0.03
58 6 0.00
59 4 0.00
60 2 0.00
61 3 0.00
63 1 0.00
64 3 0.00
65 17 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:80272334 original size:96 final size:96
Alignment explanation
Indices: 80272057--80274257 Score: 3347
Period size: 96 Copynumber: 22.8 Consensus size: 96
80272047 GTGTGTATAC
*
80272057 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
80272122 GTGATAAGG-CTAAT-GCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
80272151 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
80272214 GTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80272245 ATGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
80272310 GTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
80272341 GTGAAAGTGTATATATGTGCTAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
80272406 GTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
80272437 GTGAAAGTGTATATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
80272502 A--TGATAAGGCCTAATAGCCGATGTGATGAAT
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80272533 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
80272598 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80272631 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
*
80272694 GTGATAAGGCCTAATGGCCGATGTGACGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80272725 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTG--TATAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
80272788 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80272821 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
80272884 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80272917 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
80272980 ATGTGATAAGGCCTAATCGCCGATGTGATGAAT
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80273013 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
*
80273076 GTGATAAGGCCTAACGGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
80273107 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
80273172 GTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
80273203 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TA-
*
80273268 GTGATAATATGTGATAAGGCCTAATGGCCAATGTGATGAAT
59 -T-AT-ATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80273309 GTGAAAGTGTATATATGTGATATGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
80273374 GTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
80273405 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
80273468 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
80273501 GTGAAAGTGTATATATATGAGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
80273566 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80273599 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
80273662 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
80273695 GTGAAGGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
* * *
80273758 GTGTTAAGGCCTATTGGCCGATATGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
** * * * *
80273789 GTGAAA-TGTGATGA-ATGTGA-AAGTGTATATATATG-TGATAAGGCCTAATGGCCGATGTGAT
1 GTGAAAGTGT-AT-ATATGTGATAAG-GCCTA-AT-GGCCGAT---G--TGAT-G--AATGTGA-
* * * * * *
80273850 GAA-TGTGAAAGTGTATAT-ATATGTG-ATAAGGCCTAATGGCCGATGTGATGAAT
52 -AAGTGT-ATA-TATATGTGATAAG-GCCTAA---T----GGCCGATGTGATGAAT
80273903 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
80273968 GTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80273999 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
*
80274062 GTGATAAGGCCTAATAGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
80274093 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
80274156 GTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * *
80274187 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGTATA-A-AT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
80274250 GTGATAAG
66 GTGATAAG
80274258 TCCTGAAGGG
Statistics
Matches: 1973, Mismatches: 70, Indels: 128
0.91 0.03 0.06
Matches are distributed among these distances:
92 16 0.01
93 11 0.01
94 594 0.30
95 7 0.00
96 865 0.44
97 2 0.00
98 280 0.14
100 5 0.00
101 1 0.00
102 8 0.00
103 17 0.01
104 52 0.03
105 10 0.01
106 43 0.02
107 7 0.00
108 9 0.00
110 1 0.00
112 1 0.00
113 6 0.00
114 32 0.02
115 6 0.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:80273809 original size:63 final size:64
Alignment explanation
Indices: 80273731--80273859 Score: 215
Period size: 65 Copynumber: 2.0 Consensus size: 64
80273721 CTAATAGCCG
* *
80273731 ATGTGATGAATGTGAAAGTG-TATATATGTGTTAAGGCCTATTGGCCGATATGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAA
*
80273794 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAA
80273859 A
1 A
80273860 GTGTATATAT
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
63 20 0.33
65 41 0.67
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.32
Consensus pattern (64 bp):
ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAA
Found at i:80273847 original size:112 final size:111
Alignment explanation
Indices: 80273684--80273908 Score: 371
Period size: 112 Copynumber: 2.0 Consensus size: 111
80273674 CTAATGGCCG
*
80273684 ATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAGGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
* *
80273749 TG-TATATATGTGTTAAGGCCTATTGGCCGATATGATGAATGTGAA
66 TGATATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAA
*
80273794 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTG-AAG-GTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
80273859 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
64 AGTG-ATATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAA
80273908 A
1 A
80273909 GTGTATATAT
Statistics
Matches: 106, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
110 14 0.13
111 3 0.03
112 48 0.45
114 41 0.39
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (111 bp):
ATGTGATGAATGTGAAGGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
TGATATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAA
Found at i:80274426 original size:37 final size:37
Alignment explanation
Indices: 80274376--80274477 Score: 177
Period size: 37 Copynumber: 2.8 Consensus size: 37
80274366 CCGAGCTCTA
*
80274376 AAGACCCGATGACTACGTGTGGAGATTTTGTTCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
80274413 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* *
80274450 AAGACCCGATAACTTCGTGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
80274478 CGTCTGAGCT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:80276031 original size:40 final size:40
Alignment explanation
Indices: 80275708--80276019 Score: 480
Period size: 40 Copynumber: 7.8 Consensus size: 40
80275698 GAGAATTGAG
80275708 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
80275748 AGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
80275788 AGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
80275828 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
80275868 AGTGATATATCCAGGTTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
80275908 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
80275948 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
80275988 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
80276020 ATCATGCTGG
Statistics
Matches: 245, Mismatches: 27, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 245 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:80279616 original size:49 final size:47
Alignment explanation
Indices: 80279543--80280189 Score: 1033
Period size: 47 Copynumber: 13.5 Consensus size: 47
80279533 GTGTGTATAC
* *
80279543 GTGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80279590 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCTATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80279639 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80279686 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
80279735 GTGAAAGTGTATATATGTGCTAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80279782 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80279831 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80279880 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80279927 GTGAAATTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80279976 GTGAAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80280025 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80280072 GTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * *
80280119 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80280166 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
80280190 TCCCGAAGGG
Statistics
Matches: 564, Mismatches: 26, Indels: 20
0.92 0.04 0.03
Matches are distributed among these distances:
47 288 0.51
49 276 0.49
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:80279707 original size:96 final size:96
Alignment explanation
Indices: 80279543--80280189 Score: 1072
Period size: 96 Copynumber: 6.8 Consensus size: 96
80279533 GTGTGTATAC
* *
80279543 GTGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGATGAATGTGAAAGTGTATATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
*
80279608 GTGATAAGGCCTAATGGCCTATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
80279639 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
80279704 GTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
80279735 GTGAAAGTGTATATATGTGCTAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
80279800 GTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
80279831 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
80279894 ATGTGATAAGGCCTAATAGCCGATGTGATGAAT
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
80279927 GTGAAATTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
80279992 ATGTGATAAGGCCTAATGACCGATGTGATGAAT
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAAT
80280025 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
*
80280088 GTGATAAGGCTTAATGGCCGATGTGATGAAT
66 GTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * *
80280119 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-AT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
80280182 GTGATAAG
66 GTGATAAG
80280190 TCCCGAAGGG
Statistics
Matches: 522, Mismatches: 21, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
94 95 0.18
95 1 0.00
96 337 0.65
98 89 0.17
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:80279805 original size:145 final size:143
Alignment explanation
Indices: 80279543--80280189 Score: 1059
Period size: 145 Copynumber: 4.5 Consensus size: 143
80279533 GTGTGTATAC
* *
80279543 GTGAAAGTG--TATATATGTGATAAGGCCTAATAGTCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
* *
80279606 ATGTGATAAGGCCTAATGGCCTATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
64 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
80279671 GCCGATGTGATGAAT
129 GCCGATGTGATGAAT
80279686 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
80279751 GTGCTAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG
80279816 GCCGATGTGATGAAT
129 GCCGATGTGATGAAT
80279831 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
80279896 GTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAATTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATG
80279961 GCCGATGTGATGAAT
129 GCCGATGTGATGAAT
*
80279976 GTGAAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
80280041 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGGC
66 GTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
80280106 CGATGTGATGAAT
131 CGATGTGATGAAT
* * * * * * * *
80280119 GTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
80280182 GTGATAAG
66 GTGATAAG
80280190 TCCCGAAGGG
Statistics
Matches: 478, Mismatches: 20, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
141 53 0.11
143 101 0.21
145 322 0.67
147 2 0.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
CGATGTGATGAAT
Found at i:80280358 original size:37 final size:37
Alignment explanation
Indices: 80280308--80280413 Score: 167
Period size: 37 Copynumber: 2.9 Consensus size: 37
80280298 CCGAGCTCTA
* *
80280308 AAGACCCGATGACTACATGTGGAGATTTTGTTCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
80280345 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* **
80280382 AAGACCCGATAACTTTGTGTGGAGATTTTGTC
1 AAGACCCGATGACTACGTGTGGAGATTTTGTC
80280414 TGAGCTAAAG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:80283154 original size:18 final size:19
Alignment explanation
Indices: 80283126--80283169 Score: 63
Period size: 18 Copynumber: 2.3 Consensus size: 19
80283116 CTTTGGCAGA
80283126 ATATAATTTTCATATACA-C
1 ATAT-ATTTTCATATACATC
*
80283145 ATATATTTTCATTTACATC
1 ATATATTTTCATATACATC
80283164 ATATAT
1 ATATAT
80283170 AATTAGTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 12 0.52
19 11 0.48
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.48
Consensus pattern (19 bp):
ATATATTTTCATATACATC
Found at i:80284810 original size:40 final size:40
Alignment explanation
Indices: 80284755--80284832 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
80284745 TGCGGTACCT
**
80284755 TATGGTGTGTGGGGATGGATGAGACGATTGTATCCCCATA
1 TATGGTGTGCAGGGATGGATGAGACGATTGTATCCCCATA
* * * *
80284795 TATGGTGTGCAGGGATGGGTGGGTCGATTTTATCCCCA
1 TATGGTGTGCAGGGATGGATGAGACGATTGTATCCCCA
80284833 CATGGTGTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.19, C:0.14, G:0.36, T:0.31
Consensus pattern (40 bp):
TATGGTGTGCAGGGATGGATGAGACGATTGTATCCCCATA
Found at i:80289130 original size:16 final size:17
Alignment explanation
Indices: 80289098--80289130 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
80289088 TTTTTGGGCT
80289098 TAATGGGCCAAAACGGGA
1 TAATGGGCC-AAACGGGA
80289116 TAATGGGCC-AACGGG
1 TAATGGGCCAAACGGG
80289131 CCCAAATTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.33, C:0.18, G:0.36, T:0.12
Consensus pattern (17 bp):
TAATGGGCCAAACGGGA
Found at i:80289406 original size:27 final size:27
Alignment explanation
Indices: 80289366--80289506 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
80289356 AGGAAGCGTC
*
80289366 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
80289393 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
80289419 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
80289447 CTAGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
80289474 CTGGTGGCTCTGCCACAA-TACCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
80289501 CTGGTG
1 CTGGTG
80289507 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
26 10 0.10
27 85 0.86
28 4 0.04
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:80289445 original size:54 final size:54
Alignment explanation
Indices: 80289363--80289506 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
80289353 TGGAGGAAGC
80289363 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
80289417 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
80289471 GTTCTGGTGGCTCTGCCACAA-TACCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
80289507 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 79 0.94
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.33
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:80289518 original size:81 final size:80
Alignment explanation
Indices: 80289369--80289524 Score: 201
Period size: 81 Copynumber: 1.9 Consensus size: 80
80289359 AAGCGTCCTG
* *
80289369 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTATGCC
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATACCTGTCCTGGTGACTATGCC
80289434 ACAATTATCTGATCTA
66 ACAA-TATCTGATCTA
* * *
80289450 GTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATACCTGTATCTGGTGACT-TC
1 GTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATACCTGT-CCTGGTGACTAT-
*
80289512 GTCACAATATCTG
63 GCCACAATATCTG
80289525 GCAGCCTCAC
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
80 16 0.24
81 50 0.76
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.33
Consensus pattern (80 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATACCTGTCCTGGTGACTATGCC
ACAATATCTGATCTA
Found at i:80296428 original size:27 final size:27
Alignment explanation
Indices: 80296389--80296528 Score: 171
Period size: 27 Copynumber: 5.2 Consensus size: 27
80296379 GGAAGCGTCT
*
80296389 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAATTATCTGATC
80296416 TGGTGGCTCTGCCAC-ATATATCTG-TCC
1 TGGTGGCTCTGCCACAAT-TATCTGAT-C
*
80296443 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAATTATCTGATC
*
80296470 TGGTGGCTCTGCCAC-ATATATCTGTTC
1 TGGTGGCTCTGCCACAAT-TATCTGATC
* *
80296497 TAGTGGCTCTACCACAA-TATCTGTATC
1 TGGTGGCTCTGCCACAATTATCTG-ATC
80296524 TGGTG
1 TGGTG
80296529 ACTTCATCAC
Statistics
Matches: 98, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
26 11 0.11
27 83 0.85
28 4 0.04
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATTATCTGATC
Found at i:80296471 original size:54 final size:54
Alignment explanation
Indices: 80296389--80296528 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 54
80296379 GGAAGCGTCT
80296389 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCC
1 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCC
*
80296443 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCC
* * *
80296497 TAGTGGCTCTACCACAA-TATCTGTATCTGGTG
1 TGGTGGCTATGCCACAATTATCTG-ATCTGGTG
80296529 ACTTCATCAC
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 6 0.07
54 75 0.93
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCC
Found at i:80299073 original size:19 final size:18
Alignment explanation
Indices: 80299027--80299074 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
80299017 TTTTTGTTGT
*
80299027 TTAATATTTTTTATCGTA
1 TTAATATTTTATATCGTA
* *
80299045 TTGATAATTTTATATGGTAA
1 TTAAT-ATTTTATATCGT-A
80299065 TTAATATTTT
1 TTAATATTTT
80299075 TTGAAAATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 4 0.17
19 15 0.62
20 5 0.21
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.58
Consensus pattern (18 bp):
TTAATATTTTATATCGTA
Found at i:80299301 original size:25 final size:24
Alignment explanation
Indices: 80299272--80299329 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 24
80299262 GGGCAGGGCC
*
80299272 AATTTTT-AAAGGAGGAAATCAAATA
1 AATTTTTAAAAAGA-GAAATCAAA-A
*
80299297 AATTTTTTAAAAAGAGAAATCAAAG
1 AA-TTTTTAAAAAGAGAAATCAAAA
80299322 AATTTTTA
1 AATTTTTA
80299330 GATCTTGGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 6 0.21
25 4 0.14
26 14 0.48
27 5 0.17
ACGTcount: A:0.52, C:0.03, G:0.12, T:0.33
Consensus pattern (24 bp):
AATTTTTAAAAAGAGAAATCAAAA
Found at i:80299626 original size:19 final size:20
Alignment explanation
Indices: 80299602--80299643 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
80299592 CTCAAGAAAA
**
80299602 CAAAATAAA-AATTACAACC
1 CAAAATAAATAAGAACAACC
80299621 CAAAATAAATAAGAACAACC
1 CAAAATAAATAAGAACAACC
80299641 CAA
1 CAA
80299644 TGAATGGACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.64, C:0.21, G:0.02, T:0.12
Consensus pattern (20 bp):
CAAAATAAATAAGAACAACC
Found at i:80299887 original size:18 final size:18
Alignment explanation
Indices: 80299864--80299900 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
80299854 AAACCATTGC
80299864 CCCTCTTTAGAATCTTGG
1 CCCTCTTTAGAATCTTGG
80299882 CCCTCTTTAGAATCTTGG
1 CCCTCTTTAGAATCTTGG
80299900 C
1 C
80299901 ACTCCTTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.30, G:0.16, T:0.38
Consensus pattern (18 bp):
CCCTCTTTAGAATCTTGG
Found at i:80302317 original size:15 final size:15
Alignment explanation
Indices: 80302275--80302320 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
80302265 TATAAAATCC
80302275 ATTTAAAATAAA-AA
1 ATTTAAAATAAATAA
* *
80302289 CTTAACAAAT-AATAA
1 ATTTA-AAATAAATAA
80302304 ATTTAAAATAAATAA
1 ATTTAAAATAAATAA
80302319 AT
1 AT
80302321 GAAACACATG
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.30
Consensus pattern (15 bp):
ATTTAAAATAAATAA
Found at i:80302788 original size:61 final size:58
Alignment explanation
Indices: 80302708--80302839 Score: 192
Period size: 61 Copynumber: 2.2 Consensus size: 58
80302698 CCAAAAATAA
* * * *
80302708 TATTATTTTAATAGTTTTAATATTAAATTTAATTTAATATTTATCTTGTAGATAAATATTT
1 TATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAATATTG
*
80302769 TATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTG
1 TATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTG
80302827 TATTAATTTAATA
1 TATTAATTTAATA
80302840 TTAAAGTGAT
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
58 22 0.33
59 1 0.02
60 1 0.02
61 42 0.64
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.53
Consensus pattern (58 bp):
TATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTG
Found at i:80302794 original size:20 final size:20
Alignment explanation
Indices: 80302705--80302801 Score: 58
Period size: 20 Copynumber: 4.8 Consensus size: 20
80302695 ATTCCAAAAA
* *
80302705 TAATATTATTTTAATAGTTT
1 TAATATTAATTTAATAGATT
*
80302725 TAATATTAAATT--TA-ATT
1 TAATATTAATTTAATAGATT
* *
80302742 TAATATTTATCTTGTAGATAAATAT
1 TAATA-TTA-ATT-TA-ATAGAT-T
*
80302767 T-TTATTAATTTAATAGATT
1 TAATATTAATTTAATAGATT
80302786 TAATATTAAATTTAAT
1 TAATATT-AATTTAAT
80302802 CTAATATTTA
Statistics
Matches: 58, Mismatches: 9, Indels: 19
0.67 0.10 0.22
Matches are distributed among these distances:
17 7 0.12
18 5 0.09
19 3 0.05
20 20 0.34
21 10 0.17
22 2 0.03
23 5 0.09
24 4 0.07
25 2 0.03
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (20 bp):
TAATATTAATTTAATAGATT
Found at i:80302852 original size:58 final size:60
Alignment explanation
Indices: 80302708--80302865 Score: 171
Period size: 61 Copynumber: 2.6 Consensus size: 60
80302698 CCAAAAATAA
* * * * *
80302708 TATTATTTTAATAGTTTTAATATTAAATTTAATTTAATATTTATCTTGTAGATAAATATTT
1 TATTAATTTAATA-ATTAAATATTAAATTTAATCTAATATTTATCTTGTAGATAAATATTG
* *
80302769 TATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAGTATTG
1 TATTAATTTAATA-ATTAAATATTAAATTTAATCTAATATTTATCTTGTAGATAAATATTG
*
80302827 TATTAATTTAAT-ATTAAAGTGATTAAGTTTAATCATAAT
1 TATTAATTTAATAATTAAA-T-ATTAAATTTAATC-TAAT
80302866 TAAACTTTTT
Statistics
Matches: 87, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
56 5 0.06
57 1 0.01
58 33 0.38
59 5 0.06
60 1 0.01
61 42 0.48
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (60 bp):
TATTAATTTAATAATTAAATATTAAATTTAATCTAATATTTATCTTGTAGATAAATATTG
Found at i:80304633 original size:27 final size:27
Alignment explanation
Indices: 80304595--80304653 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
80304585 AAGTCTAGGG
80304595 TTTGACCCATGTTAGACATGTGTGTAT
1 TTTGACCCATGTTAGACATGTGTGTAT
80304622 TTTGACCCATGTTAGACATGTGTGTAT
1 TTTGACCCATGTTAGACATGTGTGTAT
80304649 TTTGA
1 TTTGA
80304654 TGGCTAATGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.22, C:0.14, G:0.22, T:0.42
Consensus pattern (27 bp):
TTTGACCCATGTTAGACATGTGTGTAT
Found at i:80307467 original size:46 final size:46
Alignment explanation
Indices: 80307388--80307523 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
80307378 TATATATACA
* * * *
80307388 CATCTCATACATATCTCACA-TAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
80307433 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
80307479 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
80307524 ATACATGTTC
Statistics
Matches: 80, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
45 16 0.20
46 64 0.80
ACGTcount: A:0.26, C:0.32, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:80307557 original size:47 final size:47
Alignment explanation
Indices: 80307497--80307734 Score: 332
Period size: 47 Copynumber: 5.1 Consensus size: 47
80307487 ACACATTTCG
* *
80307497 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
80307544 CATTAGCTATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
80307591 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
80307638 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * * **
80307685 CATTTGCCATTCGGCCTTATCTCATAAATACACATTCACATTCATCA
1 CATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
80307732 CAT
1 CAT
80307735 AAAATCCTAA
Statistics
Matches: 174, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 174 1.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:80311090 original size:23 final size:23
Alignment explanation
Indices: 80311063--80311137 Score: 73
Period size: 23 Copynumber: 3.2 Consensus size: 23
80311053 TGCTATTTCC
80311063 TATCACATATAACATCTCATACT
1 TATCACATATAACATCTCATACT
* * *
80311086 TATCATC-TATTACATGCT-ATTTCC
1 TATCA-CATATAACAT-CTCA-TACT
*
80311110 TATCACATACAACATCTCATACT
1 TATCACATATAACATCTCATACT
80311133 TATCA
1 TATCA
80311138 TCTTAAACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
23 23 0.57
24 17 0.43
ACGTcount: A:0.35, C:0.27, G:0.01, T:0.37
Consensus pattern (23 bp):
TATCACATATAACATCTCATACT
Found at i:80311116 original size:47 final size:47
Alignment explanation
Indices: 80311042--80311140 Score: 180
Period size: 47 Copynumber: 2.1 Consensus size: 47
80311032 GTCATCCACA
* *
80311042 CATCAATTACATGCTATTTCCTATCACATATAACATCTCATACTTAT
1 CATCTATTACATGCTATTTCCTATCACATACAACATCTCATACTTAT
80311089 CATCTATTACATGCTATTTCCTATCACATACAACATCTCATACTTAT
1 CATCTATTACATGCTATTTCCTATCACATACAACATCTCATACTTAT
80311136 CATCT
1 CATCT
80311141 TAAACCATGC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.32, C:0.27, G:0.02, T:0.38
Consensus pattern (47 bp):
CATCTATTACATGCTATTTCCTATCACATACAACATCTCATACTTAT
Found at i:80311124 original size:24 final size:24
Alignment explanation
Indices: 80311050--80311124 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 24
80311040 CACATCAATT
80311050 ACATGCTATTTCCTATCACATATA
1 ACATGCTATTTCCTATCACATATA
* * *
80311074 ACAT-CTCA-TACTTATCATC-TATT
1 ACATGCT-ATTTCCTATCA-CATATA
*
80311097 ACATGCTATTTCCTATCACATACA
1 ACATGCTATTTCCTATCACATATA
80311121 ACAT
1 ACAT
80311125 CTCATACTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
23 18 0.46
24 21 0.54
ACGTcount: A:0.33, C:0.27, G:0.03, T:0.37
Consensus pattern (24 bp):
ACATGCTATTTCCTATCACATATA
Found at i:80318143 original size:40 final size:40
Alignment explanation
Indices: 80318099--80318457 Score: 502
Period size: 40 Copynumber: 8.7 Consensus size: 40
80318089 GCAAACACAT
* * * *
80318099 TTGCCTTTGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
80318139 TTGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
80318179 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
80318219 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAATTGCTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGG--ATAT-A--T--C--AACT-C-GCATAA
* *
80318270 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
80318310 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
80318350 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
80318390 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
80318430 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
80318458 TCCAATGCTC
Statistics
Matches: 288, Mismatches: 20, Indels: 22
0.87 0.06 0.07
Matches are distributed among these distances:
40 240 0.83
41 1 0.00
42 7 0.02
43 1 0.00
44 1 0.00
45 1 0.00
46 1 0.00
47 1 0.00
48 1 0.00
49 7 0.02
50 1 0.00
51 26 0.09
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:80318327 original size:91 final size:91
Alignment explanation
Indices: 80318172--80318353 Score: 364
Period size: 91 Copynumber: 2.0 Consensus size: 91
80318162 TATAACAACT
80318172 TGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAATTGCCTTCGGGTCTTAGC
1 TGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAATTGCCTTCGGGTCTTAGC
80318237 CCGGATATATCATCTCGCATAATTGC
66 CCGGATATATCATCTCGCATAATTGC
80318263 TGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAATTGCCTTCGGGTCTTAGC
1 TGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAATTGCCTTCGGGTCTTAGC
80318328 CCGGATATATCATCTCGCATAATTGC
66 CCGGATATATCATCTCGCATAATTGC
80318354 CTTCGGGTCA
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (91 bp):
TGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAATTGCCTTCGGGTCTTAGC
CCGGATATATCATCTCGCATAATTGC
Found at i:80318384 original size:171 final size:171
Alignment explanation
Indices: 80318099--80318433 Score: 571
Period size: 171 Copynumber: 2.0 Consensus size: 171
80318089 GCAAACACAT
* * *
80318099 TTGCCTTTGGGTCTTAACCCGGACATATCAACTTGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCATAACCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
* *
80318164 TAACAACTTGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAATTGCCTTCGG
66 TAACAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAATTGCCTTCGG
*
80318229 GTCTTAGCCCGGATATATCATCTCGCATAATTGCTGCATAA
131 GTCTTAGCCCGGATATATCAACTCGCATAATTGCTGCATAA
* * *
80318270 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCATAACCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
* *
80318335 TATCATCTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAATTGCCTTCGG
66 TAACAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAATTGCCTTCGG
80318400 GTCTTAGCCCGGATATATCAACTCGCATAATTGC
131 GTCTTAGCCCGGATATATCAACTCGCATAATTGC
80318434 CTTCGGGTCT
Statistics
Matches: 153, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
171 153 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (171 bp):
TTGCCTTCGGGTCATAACCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
TAACAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAATTGCCTTCGG
GTCTTAGCCCGGATATATCAACTCGCATAATTGCTGCATAA
Found at i:80321954 original size:72 final size:72
Alignment explanation
Indices: 80321878--80322020 Score: 261
Period size: 72 Copynumber: 2.0 Consensus size: 72
80321868 ACTTGGAGTA
80321878 AGAGAAATTTTAGTGTTTTAAGAAAATGACATTTTGGTCATTTGGTAATT-ACATGAATTAAAAA
1 AGAGAAATTTTAGTGTTTTAAGAAAATGACATTTTGGTCATTTGGTAATTAAC-TGAATTAAAAA
80321942 GCCAAATG
65 GCCAAATG
*
80321950 AGAGAAATTTTAGTGTTTTAAGAAAATGACATTTTGGTCATTTGGTAATTAACTGAATTAAAAAT
1 AGAGAAATTTTAGTGTTTTAAGAAAATGACATTTTGGTCATTTGGTAATTAACTGAATTAAAAAG
80322015 CCAAAT
66 CCAAAT
80322021 AAAGCCAAAA
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
72 67 0.97
73 2 0.03
ACGTcount: A:0.41, C:0.07, G:0.17, T:0.36
Consensus pattern (72 bp):
AGAGAAATTTTAGTGTTTTAAGAAAATGACATTTTGGTCATTTGGTAATTAACTGAATTAAAAAG
CCAAATG
Found at i:80323076 original size:21 final size:21
Alignment explanation
Indices: 80323050--80323103 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
80323040 GTGTGAAGAG
80323050 AGGCACATGGCCGTGT-GACC
1 AGGCACATGGCCGTGTGGACC
80323070 AAGGCACAT-GCACGTGTGGACC
1 -AGGCACATGGC-CGTGTGGACC
*
80323092 AGGGACATGGCC
1 AGGCACATGGCC
80323104 ATGGGAACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
20 2 0.07
21 21 0.72
22 6 0.21
ACGTcount: A:0.24, C:0.28, G:0.35, T:0.13
Consensus pattern (21 bp):
AGGCACATGGCCGTGTGGACC
Found at i:80341566 original size:28 final size:29
Alignment explanation
Indices: 80341503--80341575 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 29
80341493 CTTCGATGTC
80341503 TCGCACACTAAGTGCCATACTCAATATCT
1 TCGCACACTAAGTGCCATACTCAATATCT
** * *
80341532 T-AAACACCAAGTGCCATTCTCAATAT-T
1 TCGCACACTAAGTGCCATACTCAATATCT
80341559 TCGCACACTAAGTGCCA
1 TCGCACACTAAGTGCCA
80341576 CACATATATA
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
27 2 0.06
28 33 0.92
29 1 0.03
ACGTcount: A:0.33, C:0.30, G:0.11, T:0.26
Consensus pattern (29 bp):
TCGCACACTAAGTGCCATACTCAATATCT
Found at i:80341672 original size:40 final size:40
Alignment explanation
Indices: 80341588--80341663 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
80341578 CATATATATA
* *
80341588 TAGCCGAAGCTATCTCAAATCGCACACCAAGTGCCACATT
1 TAGCCGAAGCTATCTCAAACCGCAAACCAAGTGCCACATT
* *
80341628 TAGCCGAAGCTATTTCAAACCGCAAACTAAGTGCCA
1 TAGCCGAAGCTATCTCAAACCGCAAACCAAGTGCCA
80341664 TTCTTAGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.20
Consensus pattern (40 bp):
TAGCCGAAGCTATCTCAAACCGCAAACCAAGTGCCACATT
Found at i:80347337 original size:40 final size:40
Alignment explanation
Indices: 80347288--80347415 Score: 215
Period size: 40 Copynumber: 3.2 Consensus size: 40
80347278 ACCTTCAGTT
80347288 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCTCAAATGCCTTCGGGAC
* *
80347327 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGAC
1 TTAGCCCGGATATAGTAACTCGCTCAAATGCCTTCGGGAC
80347367 TTAGCCCGGATATAGTAACTCGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCTCAAATGCCTTCGGGAC
80347407 TTAGCCCGG
1 TTAGCCCGG
80347416 TTATCATCCG
Statistics
Matches: 83, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
39 5 0.06
40 78 0.94
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCTCAAATGCCTTCGGGAC
Found at i:80367432 original size:15 final size:15
Alignment explanation
Indices: 80367409--80367440 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
80367399 TCAAAAATTC
80367409 CAATACAAAACATAT
1 CAATACAAAACATAT
*
80367424 CAATCCAAAACATAT
1 CAATACAAAACATAT
80367439 CA
1 CA
80367441 TTCATATTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.56, C:0.25, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:80371853 original size:50 final size:50
Alignment explanation
Indices: 80371730--80372274 Score: 437
Period size: 50 Copynumber: 10.9 Consensus size: 50
80371720 ACCAAAGTTC
* * * * *
80371730 TCTGGTACGCATAGTAGCTTGCACTTAGTACTA-ACATGCGACCTATA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTA-ACAA
** * * * *
80371779 TCTGGTACATGTAGTAGCTTGCACTTGGTACTACACACATGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
* * * *
80371829 TCTGATACACGTAGTAGCCTGCACTTAGTACTACA-ACGTGA-TCAAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACT-TAA--CAA
* * * * * * *
80371880 T-GGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
* * *
80371929 CCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
* * * *
80371979 TCTGATACACATAGTAGCC-GACACTTAGTACTACACATGTGA-TCGAAGTTAA
1 TCTGGTACACATAGTAGCCTG-CACTTAGTACTACACACGTGACT-TAA--CAA
* * * * *
80372031 -C-GGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGG-TACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
** * *
80372080 TCTGGTACATGTAGTAGCCTGCACTTAGTACTACACATGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
* * * * *
80372130 TCTGATACACATAGTAGCCTACACTTTGTACTACACACGTGA-TCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACT-TAA--CAA
* * * * * * *
80372182 -CGGGTACGCATAGTAGCCTGCACTTAGTACTGCACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
* *
80372231 TCTGGTATACGTAGTAGCCTGCACTTAGTACTACACACGTGACT
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACT
80372275 CACAACGAAT
Statistics
Matches: 386, Mismatches: 88, Indels: 43
0.75 0.17 0.08
Matches are distributed among these distances:
48 1 0.00
49 46 0.12
50 258 0.67
51 78 0.20
52 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
Found at i:80372063 original size:101 final size:101
Alignment explanation
Indices: 80371731--80372274 Score: 411
Period size: 101 Copynumber: 5.4 Consensus size: 101
80371721 CCAAAGTTCT
* * * * * **
80371731 CTGG-TACGCATAGTAGCTTGCACTTAGTACTA-ACATGCGACCTATA-AATCTGGTACATGTAG
1 CTGGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTA-ACAATCTGGTACACATAG
* * *** * * *
80371793 TAGCTTGCACTTGGTACTACACACATGACTTAA-CCAT
65 TAGCCTGCACTTAGTACTACACATGCGAC-CAATCAAC
* * * * *
80371830 CT-GATACACGTAGTAGCCTGCACTTAGTACTACA-ACGTGA-TCAAAGTTAAT-GGGTACGCAT
1 CTGGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACT-TAA--CAATCTGGTACACAT
* *
80371891 AGTAGCCTACACTTAGTACTACACATGCGACCTATCAAC
63 AGTAGCCTGCACTTAGTACTACACATGCGACCAATCAAC
* * *
80371930 CTGG-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGT
1 CTGGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGGTACACATAGT
* * *
80371994 AGCC-GACACTTAGTACTACACATGTGATCGAAGTTAA-
66 AGCCTG-CACTTAGTACTACACATGCGA-CCAA-TCAAC
* * * * * **
80372031 C-GGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGT
1 CTGGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGGTACACATAGT
* * * *
80372095 AGCCTGCACTTAGTACTACACATGTGACTTAA-CCAT
66 AGCCTGCACTTAGTACTACACATGCGAC-CAATCAAC
* * * * * *
80372131 CT-GATACACATAGTAGCCTACACTTTGTACTACACACGTGA-TCGAAGTTAA-CGGGTACGCAT
1 CTGGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACT-TAA--CAATCTGGTACACAT
* * *
80372193 AGTAGCCTGCACTTAGTACTGCACATGCGACCTATCAAT
63 AGTAGCCTGCACTTAGTACTACACATGCGACCAATCAAC
* *
80372232 CTGG-TATACGTAGTAGCCTGCACTTAGTACTACACACGTGACT
1 CTGGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACT
80372275 CACAACGAAT
Statistics
Matches: 353, Mismatches: 67, Indels: 47
0.76 0.14 0.10
Matches are distributed among these distances:
98 2 0.01
99 36 0.10
100 140 0.40
101 166 0.47
102 9 0.03
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (101 bp):
CTGGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGGTACACATAGT
AGCCTGCACTTAGTACTACACATGCGACCAATCAAC
Found at i:80372094 original size:151 final size:151
Alignment explanation
Indices: 80371733--80372274 Score: 883
Period size: 151 Copynumber: 3.6 Consensus size: 151
80371723 AAAGTTCTCT
* * *
80371733 GGTACGCATAGTAGCTTGCACTTAGTACTA-ACATGCGACCTATAAATCTGGTACATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * *
80371797 TTGCACTTGGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTG-CACTTAGTACT
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCC-GACACTTAGTACT
* *
80371861 ACA-ACGTGATCAAAGTTAATG
130 ACACACGTGATCGAAGTTAACG
* *
80371882 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAACCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
80371947 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCGACACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCGACACTTAGTACTA
*
80372012 CACATGTGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACG
* *
80372033 GATACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * *
80372098 CTGCACTTAGTACTACACATGTGACTTAACCATCTGATACACATAGTAGCCTACACTTTGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCGACACTTAGTACTA
80372163 CACACGTGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACG
* *
80372184 GGTACGCATAGTAGCCTGCACTTAGTACTGCACATGCGACCTATCAATCTGGTATACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
80372249 CTGCACTTAGTACTACACACGTGACT
66 CTGCACTTAGTACTACACACGTGACT
80372275 CACAACGAAT
Statistics
Matches: 365, Mismatches: 25, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
149 29 0.08
150 92 0.25
151 244 0.67
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCGACACTTAGTACTA
CACACGTGATCGAAGTTAACG
Found at i:80375727 original size:43 final size:42
Alignment explanation
Indices: 80375571--80375728 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 42
80375561 ATGTGTTTTT
* *
80375571 GTGTAAGACCACGTCTGGGACGTTGGCATCGACTTCTGTTTTAC
1 GTGTAAGACCACGTCTAGGACGTTGGCATCGA-TTCTG-ATTAC
* * * *
80375615 GTGTAAGACCATGTCTAGGACATCGGCATC-ATATCTGATTTC
1 GTGTAAGACCACGTCTAGGACGTTGGCATCGAT-TCTGATTAC
* * *
80375657 GTGTAAGACC-C-TACTTGGGACAG-TGGCATCGATGTTTGATTGC
1 GTGTAAGACCACGT-C-TAGGAC-GTTGGCATCGAT-TCTGATTAC
*
80375700 ATGTAAGACCACGTCTAGGACGTTGGCAT
1 GTGTAAGACCACGTCTAGGACGTTGGCAT
80375729 TGTATATGCT
Statistics
Matches: 91, Mismatches: 15, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 26 0.29
43 34 0.37
44 28 0.31
45 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCACGTCTAGGACGTTGGCATCGATTCTGATTAC
Found at i:80378220 original size:46 final size:46
Alignment explanation
Indices: 80378162--80378254 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
80378152 AATCTTAAGT
80378162 TCTTACAATCATTCTTTCTTATTAAACATGAATATTTATTTACAAA
1 TCTTACAATCATTCTTTCTTATTAAACATGAATATTTATTTACAAA
*
80378208 TCTTACAGTCATTCTTTCTTATTAAACATGAATATTTATTTACAAA
1 TCTTACAATCATTCTTTCTTATTAAACATGAATATTTATTTACAAA
80378254 T
1 T
80378255 GGGAACTTGG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.35, C:0.15, G:0.03, T:0.46
Consensus pattern (46 bp):
TCTTACAATCATTCTTTCTTATTAAACATGAATATTTATTTACAAA
Found at i:80382824 original size:46 final size:46
Alignment explanation
Indices: 80382678--80382849 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
80382668 TCACTTGTGT
* * * *
80382678 GAGCTAGTGTAAGACATGTCTGGGACATGCATTAGCCAC-ATTATGA
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATTAGCCTCGA-GACGA
* * * * * * *
80382724 GAGCCAATGTAAGACCATGTCT-GAGATACGACATCAGCATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTAG-GACATG-CATTAGCCTCGAGACGA
*
80382772 GTGCTAGTGTAAGACATGTCTAGGACATGCATTAGCCTCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATTAGCCTCGAGACG-A
80382819 -AGCTAGTGTAAGACATGTCTAGGACATGCAT
1 GAGCTAGTGTAAGACATGTCTAGGACATGCAT
80382850 CGGCTACGAG
Statistics
Matches: 101, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
46 56 0.55
47 23 0.23
48 21 0.21
49 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTAGGACATGCATTAGCCTCGAGACGA
Found at i:80382860 original size:46 final size:43
Alignment explanation
Indices: 80382772--80382899 Score: 150
Period size: 46 Copynumber: 2.8 Consensus size: 43
80382762 ATTGAGACGA
* *
80382772 GTGCTAGTGTAAGACATGTCTAGGACATGCATTAGCCTCGAGAC
1 GTGCTAGTGTAAGACATGTCTAGGACATGCA-TCGGCTCGAGAC
*
80382816 GTAAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGAT
1 GT--GCTAGTGTAAGACATGTCTAGGACATGCATCGGCT-CGAGAC
*
80382862 GTG-TCAATGTAAGACCATGTCTAGGACATGGCATCGGC
1 GTGCT-AGTGTAAGA-CATGTCTAGGACAT-GCATCGGC
80382900 ACAAACATAC
Statistics
Matches: 74, Mismatches: 4, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
43 1 0.01
44 11 0.15
45 18 0.24
46 44 0.59
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (43 bp):
GTGCTAGTGTAAGACATGTCTAGGACATGCATCGGCTCGAGAC
Found at i:80393857 original size:13 final size:13
Alignment explanation
Indices: 80393839--80393865 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80393829 GAAGTAATCA
80393839 CACACGGGCGTGT
1 CACACGGGCGTGT
80393852 CACACGGGCGTGT
1 CACACGGGCGTGT
80393865 C
1 C
80393866 CCTGCCAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:80398487 original size:27 final size:27
Alignment explanation
Indices: 80398448--80398505 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
80398438 TATTACAATA
*
80398448 ATTTCCATTTCTTTTGAACTATCTTCC
1 ATTTCCATCTCTTTTGAACTATCTTCC
80398475 ATTTCCATCTCTTTTGAACTATCTTCC
1 ATTTCCATCTCTTTTGAACTATCTTCC
80398502 ATTT
1 ATTT
80398506 TTGTTCATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.19, C:0.26, G:0.03, T:0.52
Consensus pattern (27 bp):
ATTTCCATCTCTTTTGAACTATCTTCC
Found at i:80406844 original size:27 final size:27
Alignment explanation
Indices: 80406814--80406919 Score: 115
Period size: 27 Copynumber: 3.9 Consensus size: 27
80406804 CTAAATTAAA
*
80406814 AAAATGACTATTTTTCCCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
* *
80406841 AAAATGACTGTTTTGCCTTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
** * **
80406868 AAAATGACTGA-AATGCCCCTACATGGT
1 AAAATGACT-ATTTTGCCCTTATGTGGT
*
80406895 AAATTGACTATTTTGCCCTTATGTG
1 AAAATGACTATTTTGCCCTTATGTG
80406920 ATATATGTTT
Statistics
Matches: 61, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
26 1 0.02
27 60 0.98
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (27 bp):
AAAATGACTATTTTGCCCTTATGTGGT
Found at i:80408722 original size:58 final size:57
Alignment explanation
Indices: 80408650--80408783 Score: 137
Period size: 57 Copynumber: 2.3 Consensus size: 57
80408640 AAAGATTTAA
* * * *
80408650 CCTGGACAT-GTAATCCTGTTATAATCTCTCTCGAGCATATGTTACA-ATTAGGGCTTAG
1 CCTGGAC-TGGTAATCCTGTT-TAAGCTCTCTCGAGCATACGTTACATAAT-GGACTTAG
** * * * *
80408708 CCTGGACTGGTAATCCTAATTGAGCTCTTTTGAGCATACGTTACATAATGGATTTAG
1 CCTGGACTGGTAATCCTGTTTAAGCTCTCTCGAGCATACGTTACATAATGGACTTAG
80408765 CCTGGACTGGTAATCCTGT
1 CCTGGACTGGTAATCCTGT
80408784 AATACGATAT
Statistics
Matches: 62, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
57 44 0.71
58 18 0.29
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (57 bp):
CCTGGACTGGTAATCCTGTTTAAGCTCTCTCGAGCATACGTTACATAATGGACTTAG
Found at i:80416418 original size:40 final size:40
Alignment explanation
Indices: 80416363--80416629 Score: 446
Period size: 40 Copynumber: 6.7 Consensus size: 40
80416353 GAGCATTGGA
80416363 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
80416403 ATATATCCGGGCTAAGA-CCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
80416442 ATATATCCGGGCTAAGACCCGAAGGAAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
80416482 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
80416522 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
80416562 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
80416602 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
80416630 ATGTGTTTGC
Statistics
Matches: 213, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 39 0.18
40 174 0.82
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:80419640 original size:15 final size:15
Alignment explanation
Indices: 80419620--80419675 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
80419610 GTATCTTGGG
80419620 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
80419635 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
80419650 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
80419665 TTTCTTTATTC
1 TTTCTTTATTC
80419676 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:80422128 original size:46 final size:46
Alignment explanation
Indices: 80422075--80422240 Score: 174
Period size: 46 Copynumber: 3.6 Consensus size: 46
80422065 TTGAGCATCC
* *
80422075 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCT
* * * * * * * *
80422121 GAACTCGTTGACTTGAGTCCAAGTTC-GTGAAATGTA-ACTAGGCGTCC
1 GAACTCGTTGAGTTGAGTCCAAGTTCACT--TATGGATGCGA-ACGTCT
*
80422168 GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCT
* *
80422214 GAGCTCGTTGAGTTGAGTCCGAGTTCA
1 GAACTCGTTGAGTTGAGTCCAAGTTCA
80422241 TTTAGAGGCG
Statistics
Matches: 94, Mismatches: 21, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
45 1 0.01
46 58 0.62
47 34 0.36
48 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCT
Found at i:80430870 original size:17 final size:19
Alignment explanation
Indices: 80430828--80430873 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
80430818 ATGAAATTTT
*
80430828 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
80430847 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
80430865 AA-TATTATT
1 AATTATTATT
80430874 GTATGTATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 7 0.28
18 4 0.16
19 14 0.56
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:80434285 original size:349 final size:349
Alignment explanation
Indices: 80433636--80434333 Score: 1236
Period size: 349 Copynumber: 2.0 Consensus size: 349
80433626 ATTCAGAGTG
****
80433636 GCCACGAAGATTAAATTTCTGGTTTTTTTTTTAAATAAGTTTCAATTAGCTTCCTCTTAAATTTT
1 GCCACGAAGATTAAATTTCTGGTTTTTTAAAAAAATAAGTTTCAATTAGCTTCCTCTTAAATTTT
80433701 GCATTTATTTTTGAATAATTCTATTTTGGTTAAAGTTGTAATAAGGCCGCTCTATTATTTTTATT
66 GCATTTATTTTTGAATAATTCTATTTTGGTTAAAGTTGTAATAAGGCCGCTCTATTATTTTTATT
*
80433766 TTGGGTTTTTAAATTAATTAAATCGTTTTCAACATGAGATTCACATCACTTAAATTAATTCCTTG
131 TTGGATTTTTAAATTAATTAAATCGTTTTCAACATGAGATTCACATCACTTAAATTAATTCCTTG
*
80433831 AAATTGGTTAGCTCTAGGGCGCGTTTTTATCAAAAATTACTTGCTTCAAAACAACACGAAAACCG
196 AAATTGGTTAGCTCTAGGGCGCATTTTTATCAAAAATTACTTGCTTCAAAACAACACGAAAACCG
* *
80433896 AGCAAAGCTTTCACAACGTAAATGTTTTTAAAGGAAATAAATATTTTAAATAGACTTAACTTGTT
261 AGCAAAGCTTTCACAACGTAAATGTTTTCAAAGAAAATAAATATTTTAAATAGACTTAACTTGTT
80433961 GTTCGTGGACAAGTAATAAGCTTA
326 GTTCGTGGACAAGTAATAAGCTTA
* *
80433985 GCCACGAAGATTAAATTTCTGGTTTTTTAAAAAAATAAGTTTCAATTAGCTTTCTTTTAAATTTT
1 GCCACGAAGATTAAATTTCTGGTTTTTTAAAAAAATAAGTTTCAATTAGCTTCCTCTTAAATTTT
*
80434050 GCATTTATTTTTGAATATTTCTATTTTGGTTAAAGTTGTAATAAGGCCGCTCTATTATTTTTATT
66 GCATTTATTTTTGAATAATTCTATTTTGGTTAAAGTTGTAATAAGGCCGCTCTATTATTTTTATT
* * *
80434115 TTGGATTTTTAAATTAATTGAATCGTTTTCAACTTGAGATTCACATCACTTAAATTGATTCCTTG
131 TTGGATTTTTAAATTAATTAAATCGTTTTCAACATGAGATTCACATCACTTAAATTAATTCCTTG
*
80434180 AAATTGGTTAGCTCTAGGGCGCATTTTTATCAAAAATTACTTGCTTCAAAACAACACGATAACCG
196 AAATTGGTTAGCTCTAGGGCGCATTTTTATCAAAAATTACTTGCTTCAAAACAACACGAAAACCG
*
80434245 AGCAAAGC-TTCTGCAACGTAAATGTTTTCAAAGAAAATAAATATTTTAAATAGACTTAACTTGT
261 AGCAAAGCTTTC-ACAACGTAAATGTTTTCAAAGAAAATAAATATTTTAAATAGACTTAACTTGT
80434309 TGTTCGTGGACAAGTAATAAGCTTA
325 TGTTCGTGGACAAGTAATAAGCTTA
80434334 AAGTGTGGCA
Statistics
Matches: 332, Mismatches: 16, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
348 3 0.01
349 329 0.99
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40
Consensus pattern (349 bp):
GCCACGAAGATTAAATTTCTGGTTTTTTAAAAAAATAAGTTTCAATTAGCTTCCTCTTAAATTTT
GCATTTATTTTTGAATAATTCTATTTTGGTTAAAGTTGTAATAAGGCCGCTCTATTATTTTTATT
TTGGATTTTTAAATTAATTAAATCGTTTTCAACATGAGATTCACATCACTTAAATTAATTCCTTG
AAATTGGTTAGCTCTAGGGCGCATTTTTATCAAAAATTACTTGCTTCAAAACAACACGAAAACCG
AGCAAAGCTTTCACAACGTAAATGTTTTCAAAGAAAATAAATATTTTAAATAGACTTAACTTGTT
GTTCGTGGACAAGTAATAAGCTTA
Found at i:80435888 original size:17 final size:19
Alignment explanation
Indices: 80435846--80435891 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
80435836 ATGAAATTTT
*
80435846 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
80435865 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
80435883 AA-TATTATT
1 AATTATTATT
80435892 GTATGTATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 7 0.28
18 4 0.16
19 14 0.56
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:80438618 original size:49 final size:49
Alignment explanation
Indices: 80438513--80438700 Score: 241
Period size: 49 Copynumber: 3.8 Consensus size: 49
80438503 TGAGGTCGCA
** * * *
80438513 TGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-T-TGGTCACG
* * *
80438564 CGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCACG
* *
80438613 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCACG
* * *
80438662 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATA
80438701 GCTTTGGCTA
Statistics
Matches: 121, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
49 87 0.72
50 1 0.01
51 33 0.27
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCACG
Found at i:80442673 original size:5 final size:5
Alignment explanation
Indices: 80442663--80442692 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
80442653 TTTATTTCAT
*
80442663 TATTA TATTA TATTA TATTA TATTT TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA
80442693 CTATAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
TATTA
Found at i:80444094 original size:15 final size:16
Alignment explanation
Indices: 80444067--80444096 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
80444057 GATAGCAACT
80444067 AATATATATTATATAA
1 AATATATATTATATAA
80444083 AATATA-ATTATATA
1 AATATATATTATATA
80444097 TTAGTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATATATTATATAA
Found at i:80446735 original size:79 final size:81
Alignment explanation
Indices: 80446551--80446770 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 81
80446541 GCTCCTCGTT
* * * * * *
80446551 CAAATACCTTCGGGACATAGCCCGGTTA-TAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
80446615 GATTTAGTAACTCGCA
66 GAATTAGTAACTCGCA
80446631 CAAATGCCTTCGGGACTTAACCCGGAT-TTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
80446694 GAATTAGTATCTCGCA
66 GAATTAGTAACTCGCA
** * *
80446710 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATATTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
80446771 TGGACAGCAT
Statistics
Matches: 123, Mismatches: 12, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
78 12 0.10
79 56 0.46
80 55 0.45
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
GAATTAGTAACTCGCA
Found at i:80446768 original size:39 final size:40
Alignment explanation
Indices: 80446551--80446770 Score: 272
Period size: 40 Copynumber: 5.5 Consensus size: 40
80446541 GCTCCTCGTT
* * *
80446551 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
80446591 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
80446631 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
80446671 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
80446710 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
80446751 C-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
80446771 TGGACAGCAT
Statistics
Matches: 161, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.01
39 45 0.28
40 105 0.65
41 9 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:80454617 original size:79 final size:79
Alignment explanation
Indices: 80454515--80454737 Score: 276
Period size: 79 Copynumber: 2.8 Consensus size: 79
80454505 GCTCCTCGTT
* *
80454515 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
80454580 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
80454595 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCG
*
80454657 GAATTAGTATCTCGCA
64 GAATTAGTAACTCGCA
* * * * * *
80454673 CAAATGCCTTCGGATCTTAGTCTGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
80454736 GA
64 GA
80454738 CATCATTCAA
Statistics
Matches: 126, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.37
79 58 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:80454632 original size:39 final size:40
Alignment explanation
Indices: 80454515--80454737 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
80454505 GCTCCTCGTT
*
80454515 CAAATGCCTTCGGGACATAGCCCGG-ATATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
80454555 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
80454595 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
80454634 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * *
80454673 CAAATGCCTTC-GGATCTTAGTCTGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
80454714 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80454738 CATCATTCAA
Statistics
Matches: 163, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 2 0.01
39 88 0.54
40 63 0.39
41 10 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:80461535 original size:16 final size:16
Alignment explanation
Indices: 80461514--80461546 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
80461504 AATCCCTTAA
80461514 ATAGAGAGATTAAGCT
1 ATAGAGAGATTAAGCT
80461530 ATAGAGAGATTAAGCT
1 ATAGAGAGATTAAGCT
80461546 A
1 A
80461547 GCCCAGTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.06, G:0.24, T:0.24
Consensus pattern (16 bp):
ATAGAGAGATTAAGCT
Found at i:80465637 original size:29 final size:29
Alignment explanation
Indices: 80465592--80465707 Score: 121
Period size: 29 Copynumber: 4.0 Consensus size: 29
80465582 TACCTGTATC
* *
80465592 TGGCCCATTATGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
80465620 TGGCCCCTTTAGGCCCAAATCACCTGT-ATA
1 TGG-CCCATTAGGCCCAAATCACAT-TCATA
* *
80465650 TGGTCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
80465679 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
80465707 T
1 T
80465708 TCATTCTCAC
Statistics
Matches: 73, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
28 16 0.22
29 44 0.60
30 12 0.16
31 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:80465658 original size:58 final size:58
Alignment explanation
Indices: 80465583--80465694 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 58
80465573 AAATTCACAT
* * * *
80465583 ACCTGTATCTGGCCCATTATGCCC-AATCATATTCATATGGCCCCTTTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAGGCCCAAATCACATTCATATGG-CCCGTTAGGCCCAAATC
* *
80465641 ACCTGTATATGGTCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAGGCCCAAATCACATTCATATGGCCCGTTAGGCCCA
80465695 GTCACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
58 33 0.70
59 14 0.30
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAGGCCCAAATCACATTCATATGGCCCGTTAGGCCCAAATC
Found at i:80472687 original size:7 final size:8
Alignment explanation
Indices: 80472650--80472687 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
80472640 ACTTTTGACT
80472650 TTTCGGCA
1 TTTCGGCA
* *
80472658 TTTCAGCT
1 TTTCGGCA
80472666 TTTCGGCA
1 TTTCGGCA
80472674 TTTCGGCA
1 TTTCGGCA
80472682 -TTCGGC
1 TTTCGGC
80472688 TTTTACCTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
7 6 0.23
8 20 0.77
ACGTcount: A:0.11, C:0.26, G:0.24, T:0.39
Consensus pattern (8 bp):
TTTCGGCA
Found at i:80482775 original size:17 final size:17
Alignment explanation
Indices: 80482750--80482791 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
80482740 GGTCCAAAAT
*
80482750 CCCACACACCCGTAGGG
1 CCCACACACCCATAGGG
* *
80482767 CCCATACACCCATATGG
1 CCCACACACCCATAGGG
80482784 CCCACACA
1 CCCACACA
80482792 GGCCAGTTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.29, C:0.48, G:0.14, T:0.10
Consensus pattern (17 bp):
CCCACACACCCATAGGG
Found at i:80486797 original size:22 final size:23
Alignment explanation
Indices: 80486760--80486805 Score: 85
Period size: 22 Copynumber: 2.0 Consensus size: 23
80486750 ATGGTTGTCT
80486760 TGTTGGATAAAAAAATAACTCAC
1 TGTTGGATAAAAAAATAACTCAC
80486783 TGTTGGAT-AAAAAATAACTCAC
1 TGTTGGATAAAAAAATAACTCAC
80486805 T
1 T
80486806 AATATCTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.28
Consensus pattern (23 bp):
TGTTGGATAAAAAAATAACTCAC
Found at i:80487840 original size:2 final size:2
Alignment explanation
Indices: 80487833--80487860 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
80487823 AGGAGGGGGA
80487833 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
80487861 TCCCTTAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:80489579 original size:37 final size:36
Alignment explanation
Indices: 80489530--80489607 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 36
80489520 TTATTACGAA
* * *
80489530 GTCTTCCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTCCCGGACAAAATCCCCACACGAAGTCATCGG
*
80489566 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTT-CCCGGACAAAATCCCCACACGAAGTCATCGG
80489603 GTCTT
1 GTCTT
80489608 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 5 0.14
37 32 0.86
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (36 bp):
GTCTTCCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:80489876 original size:47 final size:47
Alignment explanation
Indices: 80489726--80490196 Score: 741
Period size: 47 Copynumber: 10.1 Consensus size: 47
80489716 CCCTTCGGGA
* * * * * * *
80489726 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
80489773 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80489819 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
80489866 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
80489913 CTTATCACATATATACACCTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80489960 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80490006 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80490052 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
80490099 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
80490146 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80490193 CTTA
1 CTTA
80490197 CTATCATTTC
Statistics
Matches: 403, Mismatches: 18, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
46 131 0.33
47 272 0.67
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:80489885 original size:93 final size:94
Alignment explanation
Indices: 80489726--80490196 Score: 750
Period size: 93 Copynumber: 5.0 Consensus size: 94
80489716 CCCTTCGGGA
* * * * * * * * * *
80489726 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
*
80489791 TTTCACATTCA-CACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCTATTAGGC
* *
80489819 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
80489884 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCTATTAGGC
* *
80489913 CTTATCACATATATACACCTTCACATTCATCACATCGGCTATTAGGCCTTATCACA-ATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
80489977 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCTATTAGGC
*
80490006 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATT-GGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
*
80490070 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCTATTAGGC
* *
80490099 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
80490164 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCTATTAGGC
80490193 CTTA
1 CTTA
80490197 CTATCATTTC
Statistics
Matches: 355, Mismatches: 20, Indels: 5
0.93 0.05 0.01
Matches are distributed among these distances:
92 12 0.03
93 221 0.62
94 122 0.34
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
TTTCACATTCATCACATCGGCTATTAGGC
Found at i:80489978 original size:140 final size:141
Alignment explanation
Indices: 80489726--80490196 Score: 750
Period size: 140 Copynumber: 3.4 Consensus size: 141
80489716 CCCTTCGGGA
** * * * * * * * *
80489726 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
80489791 TTTCACATTCA-CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
*
80489855 GGCCATTAGGC
131 GGCTATTAGGC
* * *
80489866 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
80489931 CTTCACATTCATCACATCGGCTATTAGGCCTTATCACA-ATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
80489995 GGCTATTAGGC
131 GGCTATTAGGC
*
80490006 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATT-GGCCTTATCACACATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
80490070 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
80490135 GGCTATTAGGC
131 GGCTATTAGGC
*
80490146 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
80490197 CTATCATTTC
Statistics
Matches: 307, Mismatches: 21, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
139 56 0.18
140 219 0.71
141 32 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
GGCTATTAGGC
Found at i:80495277 original size:42 final size:42
Alignment explanation
Indices: 80495163--80495311 Score: 131
Period size: 43 Copynumber: 3.5 Consensus size: 42
80495153 AGAAAGCTCG
* * * *
80495163 TACAATGCCAACGTCCCAGCTGTGGTCTTACGTGTAATCAAA
1 TACAATGCCAACGTCCCAGATATGGTCTTACATGAAATCAAA
* * ** *
80495205 TATCGACGCCAGTGTCCCAGACATGGTCTTACATGAAATCAAA
1 TA-CAATGCCAACGTCCCAGATATGGTCTTACATGAAATCAAA
* *
80495248 TACAATGCCAACGTCCCAAATATGGTCTTATACAT-AAAACATAA
1 TACAATGCCAACGTCCCAGATATGGTC-T-TACATGAAATCA-AA
*
80495292 GTA-GATGCCAACGTCCCAGA
1 -TACAATGCCAACGTCCCAGA
80495312 CGTGGCCTTA
Statistics
Matches: 84, Mismatches: 18, Indels: 8
0.76 0.16 0.07
Matches are distributed among these distances:
42 21 0.25
43 39 0.46
44 22 0.26
45 2 0.02
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (42 bp):
TACAATGCCAACGTCCCAGATATGGTCTTACATGAAATCAAA
Found at i:80515337 original size:37 final size:37
Alignment explanation
Indices: 80515278--80515386 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
80515268 AGCTCAGACG
* *
80515278 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
80515315 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
80515352 TAATCTCCACAAGTAGTCATCGGGTCTTACTCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
80515387 ATATATTTTC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:80515658 original size:48 final size:49
Alignment explanation
Indices: 80515532--80515670 Score: 210
Period size: 52 Copynumber: 2.8 Consensus size: 49
80515522 GCACATCGCC
*
80515532 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A-A
*
80515584 TATATATTTCACATT-GACCATTCGGCTTTACCACATATACATATCTC-A
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCAA
80515632 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
80515671 TGCATGTTCA
Statistics
Matches: 82, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
48 37 0.45
49 1 0.01
51 1 0.01
52 43 0.52
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:80515736 original size:25 final size:25
Alignment explanation
Indices: 80515708--80515785 Score: 78
Period size: 23 Copynumber: 3.2 Consensus size: 25
80515698 ATTCGGCCTT
80515708 ATCACACATATGCATGCTCACATTC
1 ATCACACATATGCATGCTCACATTC
*
80515733 AT--CACAT-TGGCCAT--TCAGCCTT-
1 ATCACACATAT-G-CATGCTCA-CATTC
80515755 ATCACACATATGCATGCTCACATTC
1 ATCACACATATGCATGCTCACATTC
80515780 ATCACA
1 ATCACA
80515786 TTGCCCATTC
Statistics
Matches: 42, Mismatches: 2, Indels: 18
0.68 0.03 0.29
Matches are distributed among these distances:
22 6 0.14
23 12 0.29
24 12 0.29
25 12 0.29
ACGTcount: A:0.31, C:0.32, G:0.09, T:0.28
Consensus pattern (25 bp):
ATCACACATATGCATGCTCACATTC
Found at i:80515869 original size:47 final size:47
Alignment explanation
Indices: 80515640--80515880 Score: 338
Period size: 47 Copynumber: 5.1 Consensus size: 47
80515630 CATACATATT
* * * * *
80515640 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
80515687 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
80515734 TCACATTGGCCATTCAGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
80515781 TCACATTGCCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* ** * **
80515828 TCACATTGGCCATTCGGCCTTATCTCGTATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
80515875 TCACAT
1 TCACAT
80515881 AAAATCCAAA
Statistics
Matches: 175, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 175 1.00
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
Found at i:80520076 original size:40 final size:40
Alignment explanation
Indices: 80520018--80520249 Score: 401
Period size: 40 Copynumber: 5.8 Consensus size: 40
80520008 CCAGCATGAT
* *
80520018 TGCTCTTCGGGACCTAGCCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
80520058 TGCTCTTCGGGACTTAGCCCGGATATATCGCTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
80520098 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
80520138 TGCTCTTCAGGACTTAGCCCGGATACAGCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
80520178 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
80520218 TGCTCTTCAGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
80520250 CTCAATTCTC
Statistics
Matches: 181, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 181 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:80521578 original size:37 final size:37
Alignment explanation
Indices: 80521519--80521627 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
80521509 AGCTCAGACG
* *
80521519 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
80521556 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
80521593 TAATCTCCACAAGTAGTCATCGGGTCTTACTCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
80521628 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Done.