Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 237 of 373
Found at i:80521989 original size:25 final size:25
Alignment explanation
Indices: 80521961--80522038 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 25
80521951 ATTCGGCCTT
80521961 ATCACACATATGCATGCTCACATTC
1 ATCACACATATGCATGCTCACATTC
* *
80521986 AT--CACAT-TGGCCAT--TCGGCCTT-
1 ATCACACATAT-G-CATGCTC-ACATTC
80522008 ATCACACATATGCATGCTCACATTC
1 ATCACACATATGCATGCTCACATTC
80522033 ATCACA
1 ATCACA
80522039 TTGCCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 5 0.12
23 12 0.30
24 12 0.30
25 11 0.28
ACGTcount: A:0.29, C:0.32, G:0.10, T:0.28
Consensus pattern (25 bp):
ATCACACATATGCATGCTCACATTC
Found at i:80522084 original size:25 final size:25
Alignment explanation
Indices: 80522008--80522085 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
80521998 ATTCGGCCTT
*
80522008 ATCACACATATGCATGCTCACATTC
1 ATCACACATATGCATGTTCACATTC
*** * *
80522033 AT--CACAT-TGCCCATTCGGCCTT-
1 ATCACACATATGCATGTTC-ACATTC
80522055 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
80522080 ATCACA
1 ATCACA
80522086 TTGGCCATTC
Statistics
Matches: 37, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.29
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:80522122 original size:47 final size:47
Alignment explanation
Indices: 80521893--80522133 Score: 331
Period size: 47 Copynumber: 5.1 Consensus size: 47
80521883 CATACATATT
* * * *
80521893 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATC-TTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCA-CATTCA
* * *
80521940 CCACATTAGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
80521987 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
80522034 TCACATTGCCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* * * ** *
80522081 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACGTTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
80522128 TCACAT
1 TCACAT
80522134 AAAATCCAAA
Statistics
Matches: 177, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.01
47 176 0.99
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
Found at i:80526441 original size:27 final size:27
Alignment explanation
Indices: 80526407--80526472 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
80526397 AGGGCAAAAT
* *
80526407 AGTCATTTTACCCTACAGGGGTATGTC
1 AGTCATTTTACACTACAAGGGTATGTC
*
80526434 AGTCATTTTACACTACAAGGGTATTTC
1 AGTCATTTTACACTACAAGGGTATGTC
* *
80526461 AATAATTTTACA
1 AGTCATTTTACA
80526473 AATCGGAGGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (27 bp):
AGTCATTTTACACTACAAGGGTATGTC
Found at i:80526487 original size:27 final size:27
Alignment explanation
Indices: 80526425--80526873 Score: 389
Period size: 27 Copynumber: 16.6 Consensus size: 27
80526415 TACCCTACAG
* * * *
80526425 GGGTATGTCAGTCATTTTAC-ACTACAA
1 GGGTATTTCAGTAATTTTACAAAT-CGA
*
80526452 GGGTATTTCAATAATTTTACAAATCG-
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
80526478 GAGGTGTTTCAGTAATTTAACAAATCGA
1 G-GGTATTTCAGTAATTTTACAAATCGA
*
80526506 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
** *
80526533 GGGTATTTTGGTAATTTTACGAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
** * *
80526560 GGGTATTTTGGTAATTTTAAAAAT-TA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * **
80526586 GGGGTATTTCAATAATTTTAAAAATTAA
1 -GGGTATTTCAGTAATTTTACAAATCGA
* *
80526614 GGGTTTTTCTA-TAATTTTATAAA-CTGA
1 GGGTATTTC-AGTAATTTTACAAATC-GA
* * *
80526641 GGGTATTTCAATAATTTTATAAATCGG
1 GGGTATTTCAGTAATTTTACAAATCGA
*
80526668 GGGTATTT-AGGTAATTTTACGAATCGA
1 GGGTATTTCA-GTAATTTTACAAATCGA
*
80526695 GGATATTTC-GATAATTTTACAAATC-A
1 GGGTATTTCAG-TAATTTTACAAATCGA
*
80526721 GAGGTACTTCAGTAATTTTACAAATCGA
1 G-GGTATTTCAGTAATTTTACAAATCGA
** *
80526749 GGGTATTTTGGTAATTTTACAAATCAA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
80526776 GGGTATTTCAGTAATTTTACAAACCTG-
1 GGGTATTTCAGTAATTTTACAAATC-GA
* * * *
80526803 GGGTACTTCAGTAATTTTCCAAACCAA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
80526830 GGGTATTTTAGTAATTTTACAAA-CTGG
1 GGGTATTTCAGTAATTTTACAAATC-GA
80526857 GGGTATTTC-GATAATTT
1 GGGTATTTCAG-TAATTT
80526874 CTCTTTATTC
Statistics
Matches: 352, Mismatches: 51, Indels: 38
0.80 0.12 0.09
Matches are distributed among these distances:
26 9 0.03
27 334 0.95
28 9 0.03
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:80527226 original size:28 final size:28
Alignment explanation
Indices: 80527190--80527253 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
80527180 CAGCCCATTT
*
80527190 AGGCCCAATCACATTCACATGGTCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
80527218 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
80527246 AGGCCCAA
1 AGGCCCAA
80527254 CTACTTCCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.30, C:0.36, G:0.16, T:0.19
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:80540218 original size:30 final size:30
Alignment explanation
Indices: 80540184--80540244 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
80540174 CCCCTAATAC
80540184 AAACTTTGGCAAAATTACCA-TTTTGCCCCT
1 AAACTTTGGCAAAATTA-CAGTTTTGCCCCT
* * *
80540214 AAACTTTTGCATATTTACAGTTTTGCCCCT
1 AAACTTTGGCAAAATTACAGTTTTGCCCCT
80540244 A
1 A
80540245 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAGTTTTGCCCCT
Found at i:80542022 original size:24 final size:24
Alignment explanation
Indices: 80541990--80542036 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
80541980 TTTGATTGTG
80541990 ATTATCTATTAAATAATCCAAACA
1 ATTATCTATTAAATAATCCAAACA
80542014 ATTATCTATTAAATAATCCAAAC
1 ATTATCTATTAAATAATCCAAAC
80542037 TATTTATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (24 bp):
ATTATCTATTAAATAATCCAAACA
Found at i:80546388 original size:15 final size:15
Alignment explanation
Indices: 80546368--80546399 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
80546358 GCATTGAGTG
80546368 AACGGATTTAACTCA
1 AACGGATTTAACTCA
80546383 AACGGATTTAACTCA
1 AACGGATTTAACTCA
80546398 AA
1 AA
80546400 GGAATCAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (15 bp):
AACGGATTTAACTCA
Found at i:80547658 original size:12 final size:11
Alignment explanation
Indices: 80547634--80547686 Score: 65
Period size: 12 Copynumber: 4.7 Consensus size: 11
80547624 ATTCAATTAT
80547634 TTTAATA-AAA
1 TTTAATATAAA
80547644 TTTAATATTAAA
1 TTTAATA-TAAA
80547656 TTTAATGATAAA
1 TTTAAT-ATAAA
80547668 TATT-ATATAAA
1 T-TTAATATAAA
80547679 TTTAATAT
1 TTTAATAT
80547687 TAAAGTGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
10 9 0.24
11 10 0.26
12 16 0.42
13 3 0.08
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (11 bp):
TTTAATATAAA
Found at i:80549511 original size:22 final size:22
Alignment explanation
Indices: 80549467--80549511 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
80549457 TTATTACTAT
* * *
80549467 AAATTTAAATTTTAATATTTAA
1 AAATTTAAATTTCAAAATCTAA
*
80549489 AAATTTATATTTCAAAATCTAA
1 AAATTTAAATTTCAAAATCTAA
80549511 A
1 A
80549512 TTTAGAATTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (22 bp):
AAATTTAAATTTCAAAATCTAA
Found at i:80550966 original size:34 final size:35
Alignment explanation
Indices: 80550919--80550984 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 35
80550909 TAGCCTTAGT
* *
80550919 TTTTTTTCTAAATT-AGTTTCCCGAAATCCCTAAA
1 TTTTTTTCCAAATTCAGTTTCCCCAAATCCCTAAA
*
80550953 TTTTTTTCCAAATTCATTTTCCCCAAATCCCT
1 TTTTTTTCCAAATTCAGTTTCCCCAAATCCCT
80550985 TAGGTTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 13 0.46
35 15 0.54
ACGTcount: A:0.26, C:0.26, G:0.03, T:0.45
Consensus pattern (35 bp):
TTTTTTTCCAAATTCAGTTTCCCCAAATCCCTAAA
Found at i:80550993 original size:36 final size:36
Alignment explanation
Indices: 80550912--80551014 Score: 113
Period size: 36 Copynumber: 2.9 Consensus size: 36
80550902 GTTTTGATAG
* * * *
80550912 CCTTAGTTTTTTTTCTAAATT-AGTTTCCCGAAATC
1 CCTTAGATTTTTTTCCAAATTCATTTTCCCCAAATC
*
80550947 CC-TAAATTTTTTTCCAAATTCATTTTCCCCAAATC
1 CCTTAGATTTTTTTCCAAATTCATTTTCCCCAAATC
* *
80550982 CCTTAGGTTTTTTCCCCAAA-TCATTTTCCCCAA
1 CCTTAGATTTTTT-TCCAAATTCATTTTCCCCAA
80551015 TCCTATCGCC
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
34 15 0.26
35 16 0.28
36 21 0.37
37 5 0.09
ACGTcount: A:0.24, C:0.27, G:0.05, T:0.44
Consensus pattern (36 bp):
CCTTAGATTTTTTTCCAAATTCATTTTCCCCAAATC
Found at i:80551113 original size:23 final size:23
Alignment explanation
Indices: 80551081--80551147 Score: 89
Period size: 24 Copynumber: 2.9 Consensus size: 23
80551071 ATATTTCAAA
*
80551081 TCTTCACTCAAATTTCTTTGTTC
1 TCTTCGCTCAAATTTCTTTGTTC
**
80551104 TCTTCGCTCAAATTTCTCCCGTTC
1 TCTTCGCTCAAATTTCT-TTGTTC
*
80551128 TCTTCGCTCAAATCTCTTTG
1 TCTTCGCTCAAATTTCTTTG
80551148 GTCTATTATT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
23 17 0.46
24 20 0.54
ACGTcount: A:0.15, C:0.31, G:0.07, T:0.46
Consensus pattern (23 bp):
TCTTCGCTCAAATTTCTTTGTTC
Found at i:80551579 original size:26 final size:26
Alignment explanation
Indices: 80551550--80551607 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
80551540 TATGGTTCTA
80551550 TGTTTTGTTGACCTAGTTTAGTAGAT
1 TGTTTTGTTGACCTAGTTTAGTAGAT
80551576 TGTTTTGTTGACCTAGTTTAGTAGAT
1 TGTTTTGTTGACCTAGTTTAGTAGAT
80551602 TGTTTT
1 TGTTTT
80551608 TTTTTGAACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.17, C:0.07, G:0.22, T:0.53
Consensus pattern (26 bp):
TGTTTTGTTGACCTAGTTTAGTAGAT
Found at i:80552579 original size:16 final size:16
Alignment explanation
Indices: 80552558--80552595 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
80552548 AGAATGCTTG
80552558 TCATGTGATTTTAATA
1 TCATGTGATTTTAATA
*
80552574 TCATGTGATTTTCATA
1 TCATGTGATTTTAATA
*
80552590 CCATGT
1 TCATGT
80552596 ATCTATGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.47
Consensus pattern (16 bp):
TCATGTGATTTTAATA
Found at i:80553800 original size:20 final size:19
Alignment explanation
Indices: 80553759--80553803 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
80553749 AATAAAACAT
*
80553759 AATATAATATTTATCATAAA
1 AATA-AATATTTATAATAAA
*
80553779 AATAAATATTATATAATTAA
1 AATAAATATT-TATAATAAA
80553799 AATAA
1 AATAA
80553804 TTTTTTAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
AATAAATATTTATAATAAA
Found at i:80557558 original size:40 final size:40
Alignment explanation
Indices: 80557510--80557609 Score: 146
Period size: 40 Copynumber: 2.5 Consensus size: 40
80557500 TTGCGGGTAC
* **
80557510 CTGTCAGCTTGTGTGAGTAGCCCGTGTAGTTATGTCCTAA
1 CTGTCAGCTTGTGTGAGCAGCCCGTGTAGTTACATCCTAA
* *
80557550 TTGTCAGCTTGTGTGAGCAGCCCGTGTAGTTACATCCTGA
1 CTGTCAGCTTGTGTGAGCAGCCCGTGTAGTTACATCCTAA
*
80557590 CTGTCAGCTTATGTGAGCAG
1 CTGTCAGCTTGTGTGAGCAG
80557610 GTTCGTGATT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.18, C:0.21, G:0.28, T:0.33
Consensus pattern (40 bp):
CTGTCAGCTTGTGTGAGCAGCCCGTGTAGTTACATCCTAA
Found at i:80560123 original size:25 final size:25
Alignment explanation
Indices: 80560094--80560141 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
80560084 AACAAAAGCA
80560094 AAATAAAAATAA-AAATGAAATAAAT
1 AAAT-AAAATAATAAATGAAATAAAT
*
80560119 AAATAGAATAATAAATGAAATAA
1 AAATAAAATAATAAATGAAATAA
80560142 CAAAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (25 bp):
AAATAAAATAATAAATGAAATAAAT
Found at i:80560140 original size:12 final size:12
Alignment explanation
Indices: 80560100--80560141 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
80560090 AGCAAAATAA
80560100 AAATAA-AAATG
1 AAATAATAAATG
80560111 AAATAAATAAAT-
1 AAAT-AATAAATG
80560123 AGAATAATAAATG
1 A-AATAATAAATG
80560136 AAATAA
1 AAATAA
80560142 CAAAAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
11 4 0.15
12 15 0.56
13 8 0.30
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (12 bp):
AAATAATAAATG
Found at i:80560242 original size:3 final size:3
Alignment explanation
Indices: 80560234--80560411 Score: 207
Period size: 3 Copynumber: 59.7 Consensus size: 3
80560224 TTTTTAAAAG
80560234 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
** * * * *
80560283 -AA TCG TAA TAG TAA TAA TAA CAA TAA TAA TAA TCA TCA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * * *
80560330 TAG CAA -AA TAA TAA CAA TAA TAA TGA TAG TAG TAA AAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
80560377 TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
80560412 TGAATTTTTG
Statistics
Matches: 149, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
2 3 0.02
3 145 0.97
4 1 0.01
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:80561413 original size:21 final size:21
Alignment explanation
Indices: 80561373--80561419 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
80561363 ATACGATTTC
*
80561373 TTTTTGAATTTCTTTGCTTTT
1 TTTTTGAATTGCTTTGCTTTT
80561394 TTTTGTGAATTGCTTT-CTTTT
1 TTTT-TGAATTGCTTTGCTTTT
80561415 TTTTT
1 TTTTT
80561420 TGATTTTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 1 0.04
21 13 0.54
22 10 0.42
ACGTcount: A:0.09, C:0.09, G:0.11, T:0.72
Consensus pattern (21 bp):
TTTTTGAATTGCTTTGCTTTT
Found at i:80562215 original size:45 final size:44
Alignment explanation
Indices: 80562035--80562321 Score: 177
Period size: 45 Copynumber: 6.4 Consensus size: 44
80562025 CTCCATTGTG
* * * *
80562035 ACTTCAGGAAGATAAAACTTGTA-ATTTCAACCTGCTCCACTGCA
1 ACTTCAGGGAGATAAGACTTGTATA-TTCAATCTACTCCACTGCA
* ** * * *
80562079 ACTTCAGGGAGGTAAGGTTTGT-T-TT-GATCTACTCTACTACA
1 ACTTCAGGGAGATAAGACTTGTATATTCAATCTACTCCACTGCA
* * **
80562120 ACTTCAGAGAGATAAGATCTGTAATCTATAGCTTCAATCTGTTCCACTGCA
1 ACTTCAGGGAGATAAGA-C--T--TGTATA--TTCAATCTACTCCACTGCA
* * * * *
80562171 ATTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCCACTGCA
1 ACTTCAGGGAGATAAGACTTG-TATATTCAATCTACTCCACTGCA
* *
80562216 ACCTCAGGGAGATAAGACTTGTATATTCAATCTACTCCACTGTA
1 ACTTCAGGGAGATAAGACTTGTATATTCAATCTACTCCACTGCA
* ** *** * ** *
80562260 ACTCCAGGGAGATAAGGTTTAGTGGCTTCAACCTGTTCCACTGTA
1 ACTTCAGGGAGATAAGACTT-GTATATTCAATCTACTCCACTGCA
80562305 ACTTCAGGGAGATAAGA
1 ACTTCAGGGAGATAAGA
80562322 TTCGCCGTTA
Statistics
Matches: 182, Mismatches: 48, Indels: 25
0.71 0.19 0.10
Matches are distributed among these distances:
41 25 0.14
42 2 0.01
44 54 0.30
45 66 0.36
46 3 0.02
47 4 0.02
48 1 0.01
50 2 0.01
51 25 0.14
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (44 bp):
ACTTCAGGGAGATAAGACTTGTATATTCAATCTACTCCACTGCA
Found at i:80578572 original size:4 final size:4
Alignment explanation
Indices: 80578548--80578603 Score: 53
Period size: 4 Copynumber: 14.0 Consensus size: 4
80578538 ATATAAAGAC
* * *
80578548 ATAA ATGA ATCA ATGA ATAA ATAA ATAGA AT-A ATAA ATAA AT-A ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATA-A ATAA ATAA ATAA ATAA ATAA
80578595 ATGAA ATAA
1 AT-AA ATAA
80578604 CAAAAAAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
3 6 0.14
4 31 0.70
5 7 0.16
ACGTcount: A:0.66, C:0.02, G:0.07, T:0.25
Consensus pattern (4 bp):
ATAA
Found at i:80578705 original size:3 final size:3
Alignment explanation
Indices: 80578697--80578767 Score: 124
Period size: 3 Copynumber: 23.7 Consensus size: 3
80578687 TTTTTAAAAG
*
80578697 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
80578745 TGA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TA
80578768 TGAAAATTTG
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:80579004 original size:28 final size:29
Alignment explanation
Indices: 80578966--80579025 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
80578956 AAAGAAACAA
80578966 TAATTATATTAATAATAAT-ATAATAATAG
1 TAATTATATTAATAATAATAATAA-AATAG
**
80578995 TAATTA-ATTAATTTTAATAATAAAATAG
1 TAATTATATTAATAATAATAATAAAATAG
80579023 TAA
1 TAA
80579026 AAATAACTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 18 0.64
29 10 0.36
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (29 bp):
TAATTATATTAATAATAATAATAAAATAG
Found at i:80579006 original size:14 final size:14
Alignment explanation
Indices: 80578964--80579006 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
80578954 TTAAAGAAAC
80578964 AATAATTATATTAAT
1 AATAATTA-ATTAAT
80578979 AATAATATAA-TAAT
1 AATAAT-TAATTAAT
*
80578993 AGTAATTAATTAAT
1 AATAATTAATTAAT
80579007 TTTAATAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 3 0.12
14 13 0.52
15 7 0.28
16 2 0.08
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (14 bp):
AATAATTAATTAAT
Found at i:80581845 original size:48 final size:46
Alignment explanation
Indices: 80581752--80581923 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
80581742 GGGTTATTGT
* * *
80581752 GAGCTAGTGTAAGACATGTATGGGACATGCATCGGCCA-CATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CATCAATATGA
* *
80581798 GAGCCAGTGTAAGACCATATTTGGGACATGACATCGGCATCAATATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCATCAATATGA
* * * * * *
80581846 GTGCCAGTGTAAGACATGCCTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCAATATG-A
80581893 -AGCCAGTGTAAGACATGTCTGGGACATGCAT
1 GAGCCAGTGTAAGACATGTCTGGGACATGCAT
80581924 TGACTACGAG
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
46 54 0.50
47 28 0.26
48 26 0.24
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCAATATGA
Found at i:80581934 original size:46 final size:45
Alignment explanation
Indices: 80581848--80581972 Score: 137
Period size: 46 Copynumber: 2.7 Consensus size: 45
80581838 CAATATGAGT
* * *
80581848 GCCAGTGTAAGACATGCCTGGGACATGCATCGGCCTCGAGACG-TAA
1 GCCAGTGTAAGACATGTCTGGGACATGCAT-TGACTCGAGACGAT-A
*
80581894 GCCAGTGTAAGACATGTCTGGGACATGCATTGACTACGAGATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATTGACT-CGAGACGATA
**
80581940 GTTAGTGTAAGACCATGTCTGGGA-ATGGCATTG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATTG
80581973 GCACCTTACC
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
45 3 0.04
46 48 0.70
47 18 0.26
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATTGACTCGAGACGATA
Found at i:80584944 original size:28 final size:28
Alignment explanation
Indices: 80584904--80585035 Score: 121
Period size: 28 Copynumber: 4.7 Consensus size: 28
80584894 ATCATGTGAT
80584904 TTGGG-CTAGATGGGCCACT-TAAATGAGA
1 TTGGGCCTA-ATGGGCCA-TATAAATGAGA
* *
80584932 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAATGGGCCATATAAATGAG-A
* * *
80584961 TTGGGCCTTATGGGCTA-ATGAACGTGA-A
1 TTGGGCCTAATGGGCCATAT-AA-ATGAGA
80584989 TTGGGCC-AGATGGGCCATATAAATGAGA
1 TTGGGCCTA-ATGGGCCATATAAATGAGA
*
80585017 TTGGGCCTAGTGGGCCATA
1 TTGGGCCTAATGGGCCATA
80585036 CGCATGTATG
Statistics
Matches: 84, Mismatches: 11, Indels: 18
0.74 0.10 0.16
Matches are distributed among these distances:
27 4 0.05
28 55 0.65
29 23 0.27
30 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.26
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATAAATGAGA
Found at i:80584974 original size:57 final size:55
Alignment explanation
Indices: 80584913--80585033 Score: 129
Period size: 57 Copynumber: 2.1 Consensus size: 55
80584903 TTTGGGCTAG
* * * *
80584913 ATGGGCCACTTAA-ATGAGATTGGGCCTA-ATGGGCCATATGAATGTGAATTGGGCCTT
1 ATGGGCCAATGAACATGA-ATTGGGCC-AGATGGGCCATATAAATGAG-ATTGGGCC-T
* *
80584970 ATGGGCTAATGAACGTGAATTGGGCCAGATGGGCCATATAAATGAGATTGGGCCT
1 ATGGGCCAATGAACATGAATTGGGCCAGATGGGCCATATAAATGAGATTGGGCCT
80585025 AGTGGGCCA
1 A-TGGGCCA
80585034 TACGCATGTA
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
55 2 0.04
56 15 0.28
57 34 0.63
58 3 0.06
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (55 bp):
ATGGGCCAATGAACATGAATTGGGCCAGATGGGCCATATAAATGAGATTGGGCCT
Found at i:80589717 original size:21 final size:21
Alignment explanation
Indices: 80589691--80589737 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
80589681 AATCAAACAC
80589691 AACATTCAATTAAAACATATT
1 AACATTCAATTAAAACATATT
80589712 AACATTCAATTAAAACATATT
1 AACATTCAATTAAAACATATT
80589733 AACAT
1 AACAT
80589738 ACGAAATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.32
Consensus pattern (21 bp):
AACATTCAATTAAAACATATT
Found at i:80590880 original size:47 final size:46
Alignment explanation
Indices: 80590811--80590952 Score: 221
Period size: 47 Copynumber: 3.0 Consensus size: 46
80590801 GTTGAATTTA
*
80590811 AAGCTTGTTAAATTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
80590857 AAGCTTGTTAATTTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAA-TTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
* * * *
80590904 AAGCTTATTAAATTTGCCCTTATTATTTCAGGATAAGTTACTTAGTT
1 AAGCTTGTT-AATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
80590951 AA
1 AA
80590953 AGAAAATTTT
Statistics
Matches: 89, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
46 11 0.12
47 76 0.85
48 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.14, T:0.44
Consensus pattern (46 bp):
AAGCTTGTTAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
Found at i:80591820 original size:45 final size:45
Alignment explanation
Indices: 80591756--80591917 Score: 215
Period size: 45 Copynumber: 3.6 Consensus size: 45
80591746 TATCGCACAG
80591756 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
80591801 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATACTACTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
80591846 TACTATTC-GGACTTTCGAGCCTAGGAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGA
*
80591891 TGA-TA-TCGGG-CTTCGAGCCTAGCAGGC
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGC
80591918 GAAATACTGG
Statistics
Matches: 103, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
43 12 0.12
44 11 0.11
45 79 0.77
46 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:80598289 original size:47 final size:47
Alignment explanation
Indices: 80598212--80598353 Score: 232
Period size: 47 Copynumber: 3.0 Consensus size: 47
80598202 GTTGAATTTA
*
80598212 AAGCTTGTTAAA-TTGCTCTTAATATTTTCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTTCGGATAAGTTACTTAGTT
*
80598258 AAGCTTGTTAAATTTGCCCTTAATATTTTCGGATTAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTTCGGATAAGTTACTTAGTT
* * *
80598305 AAGCTTGTTAAATTTTCCCTTATTATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTTCGGATAAGTTACTTAGTT
80598352 AA
1 AA
80598354 AGAAAATTTT
Statistics
Matches: 89, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 12 0.13
47 77 0.87
ACGTcount: A:0.27, C:0.13, G:0.14, T:0.46
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCCCTTAATATTTTCGGATAAGTTACTTAGTT
Found at i:80599206 original size:45 final size:45
Alignment explanation
Indices: 80599142--80599361 Score: 272
Period size: 45 Copynumber: 5.0 Consensus size: 45
80599132 TATCGCACAG
*
80599142 TACTATTC-AGGCCTTTGAGCATAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGA-GCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
80599187 TACTATTCGAGCCTTTGAGCCTAGAAGGCTATAATGCCAGTGAGA
1 TACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
80599232 TACTATTCAAGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
80599277 TACTATTCG-GGCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGAGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
80599322 TGA-TA-TCG-GGCTTCGAGCCTAGCAGGCGA-AATACCGGTGA
1 T-ACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
80599362 ATGAATTCAG
Statistics
Matches: 158, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
42 10 0.06
43 14 0.09
44 13 0.08
45 119 0.75
46 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (45 bp):
TACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:80606068 original size:21 final size:21
Alignment explanation
Indices: 80606042--80606097 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
80606032 TACAAGGCAC
80606042 ACACGCCCGTGTGGTCCAGGG
1 ACACGCCCGTGTGGTCCAGGG
80606063 ACACGCCCGTGTGGTCCAGGG
1 ACACGCCCGTGTGGTCCAGGG
*
80606084 ACACACCCGTGTGG
1 ACACGCCCGTGTGG
80606098 CCTTAAAACA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.16, C:0.34, G:0.36, T:0.14
Consensus pattern (21 bp):
ACACGCCCGTGTGGTCCAGGG
Found at i:80609784 original size:34 final size:34
Alignment explanation
Indices: 80609742--80609867 Score: 139
Period size: 34 Copynumber: 3.8 Consensus size: 34
80609732 GTTTTGTTAT
*
80609742 TTATATATATAATATTTATTTGCGTGCATGGGTG
1 TTATATATATAATATATATTTGCGTGCATGGGTG
* * ** * *
80609776 TTAAATATATAATAAATATTTATGTGTATTGGTG
1 TTATATATATAATATATATTTGCGTGCATGGGTG
* *
80609810 TTATATGTATAATATATATTTGGGTGCATGGGTG
1 TTATATATATAATATATATTTGCGTGCATGGGTG
* *
80609844 TTATATGTAT-A-GTATATTTGCGTG
1 TTATATATATAATATATATTTGCGTG
80609868 AGTATGCTAT
Statistics
Matches: 76, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
32 11 0.14
33 1 0.01
34 64 0.84
ACGTcount: A:0.29, C:0.03, G:0.21, T:0.47
Consensus pattern (34 bp):
TTATATATATAATATATATTTGCGTGCATGGGTG
Found at i:80609941 original size:29 final size:28
Alignment explanation
Indices: 80609889--80609954 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 28
80609879 TACATAATAC
80609889 ATATATATGTTCGGTTCTACTATACACA
1 ATATATATGTTCGGTTCTACTATACACA
* * *
80609917 ATATATATGTGT-GAGTTCTATTATATATA
1 ATATATATGT-TCG-GTTCTACTATACACA
80609946 ATATATATG
1 ATATATATG
80609955 CGGTTATAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 11 0.33
29 22 0.67
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (28 bp):
ATATATATGTTCGGTTCTACTATACACA
Found at i:80613200 original size:28 final size:28
Alignment explanation
Indices: 80613160--80613215 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
80613150 TTGGGAAGTA
*
80613160 AGGATTTGAGGGTTTAGGATATTTGCAC
1 AGGATTTGAGGGTTTAGGATATCTGCAC
80613188 AGGATTTGAGGGTTTAGGATATCTGCAC
1 AGGATTTGAGGGTTTAGGATATCTGCAC
80613216 CATAAGGGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.25, C:0.09, G:0.32, T:0.34
Consensus pattern (28 bp):
AGGATTTGAGGGTTTAGGATATCTGCAC
Found at i:80618084 original size:13 final size:13
Alignment explanation
Indices: 80618066--80618105 Score: 80
Period size: 13 Copynumber: 3.1 Consensus size: 13
80618056 GCTCGGCAGG
80618066 GACACGCCCATGT
1 GACACGCCCATGT
80618079 GACACGCCCATGT
1 GACACGCCCATGT
80618092 GACACGCCCATGT
1 GACACGCCCATGT
80618105 G
1 G
80618106 CGATTACTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.23, C:0.38, G:0.25, T:0.15
Consensus pattern (13 bp):
GACACGCCCATGT
Found at i:80621794 original size:43 final size:43
Alignment explanation
Indices: 80621703--80621800 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 43
80621693 TACAATGCCG
* *
80621703 ATGTCCCGGACATGGTCTCACATGTAATTCAATATCGATGCCA
1 ATGTCCCAGACATGGTCTCACATGTAATTCAATATCGAGGCCA
* * *
80621746 ATGTCCCAGACATGGTCTTATATGTAAATCTC-A-ATCGAGGCCT
1 ATGTCCCAGACATGGTCTCACATGT-AAT-TCAATATCGAGGCCA
*
80621789 GTGTCCCAGACA
1 ATGTCCCAGACA
80621801 CAGTCTTACA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
43 41 0.87
44 4 0.09
45 2 0.04
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (43 bp):
ATGTCCCAGACATGGTCTCACATGTAATTCAATATCGAGGCCA
Found at i:80636789 original size:32 final size:32
Alignment explanation
Indices: 80636706--80636790 Score: 116
Period size: 32 Copynumber: 2.7 Consensus size: 32
80636696 CATGCGTGGA
* * * *
80636706 TGTTAAATAAATAATATATATATGTGCATGGG
1 TGTTAAATATATAATATATTTACGTGCATGAG
80636738 TGTTAAATATATAATATATTTACGTGCATGAG
1 TGTTAAATATATAATATATTTACGTGCATGAG
* *
80636770 TGTTATATGTATAATATATTT
1 TGTTAAATATATAATATATTT
80636791 GTACGAGTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.38, C:0.04, G:0.15, T:0.44
Consensus pattern (32 bp):
TGTTAAATATATAATATATTTACGTGCATGAG
Found at i:80636874 original size:29 final size:30
Alignment explanation
Indices: 80636817--80636881 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
80636807 TACATAGTAC
80636817 ATATATATGTGCAGTTCTACTATACATAAT
1 ATATATATGTGCAGTTCTACTATACATAAT
* * * *
80636847 GTATATATGTG-AGTTTTAGTATATATAAT
1 ATATATATGTGCAGTTCTACTATACATAAT
80636876 ATATAT
1 ATATAT
80636882 GATGATAAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 20 0.67
30 10 0.33
ACGTcount: A:0.37, C:0.06, G:0.12, T:0.45
Consensus pattern (30 bp):
ATATATATGTGCAGTTCTACTATACATAAT
Found at i:80645214 original size:48 final size:48
Alignment explanation
Indices: 80645140--80645429 Score: 472
Period size: 48 Copynumber: 6.0 Consensus size: 48
80645130 CAAGATAAAT
* * * *
80645140 ATATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
80645188 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
80645236 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
80645284 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
80645332 ATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
80645380 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
80645428 AT
1 AT
80645430 GTGTGTATAT
Statistics
Matches: 226, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 226 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:80645620 original size:37 final size:37
Alignment explanation
Indices: 80645570--80645672 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
80645560 GGAAATATAT
80645570 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
80645607 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
80645644 TCTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
80645673 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:80649720 original size:40 final size:40
Alignment explanation
Indices: 80649675--80650259 Score: 992
Period size: 40 Copynumber: 14.6 Consensus size: 40
80649665 CAAGCTCAAT
* * * * *
80649675 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80649715 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
*
80649755 TGCCTTCGGGTCTTAGCCCGAATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
80649795 CGCCGTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80649835 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
80649875 TGCCTTCGGGTCTTATCCCGGATATATCAAATCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80649915 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80649955 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80649995 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80650035 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80650075 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80650115 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80650155 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
80650195 TGCCTTCGGGTCTTATCCCGGATATATCAAATCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80650235 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
80650260 CATTCAAATG
Statistics
Matches: 515, Mismatches: 28, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
39 2 0.00
40 512 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:80657644 original size:39 final size:40
Alignment explanation
Indices: 80657503--80657962 Score: 761
Period size: 40 Copynumber: 11.6 Consensus size: 40
80657493 CAAGCTCAAT
* * * * *
80657503 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80657543 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
80657583 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
80657623 CGCCGT-GGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80657662 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80657702 TGCCTTCGGGTCTTATCCCGGATATATCAA-TCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80657741 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80657781 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80657821 TGCCTTC-GGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
80657860 TGCCTTC-GGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80657899 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
80657938 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
80657963 CATTCAAATG
Statistics
Matches: 398, Mismatches: 17, Indels: 11
0.93 0.04 0.03
Matches are distributed among these distances:
39 187 0.47
40 210 0.53
41 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:80657666 original size:79 final size:80
Alignment explanation
Indices: 80657503--80657962 Score: 761
Period size: 79 Copynumber: 5.8 Consensus size: 80
80657493 CAAGCTCAAT
* * * * *
80657503 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
*
80657568 ATCAACTT-GCACAAT
66 ATCAA-TTCGCACAAA
* *
80657583 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAACGCCGT-GGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
*
80657647 ATCAGTTCGCACAAA
66 ATCAATTCGCACAAA
* *
80657662 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTATCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
80657727 ATCAA-TCGCACAAA
66 ATCAATTCGCACAAA
80657741 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
80657806 ATCAATTCGCACAAA
66 ATCAATTCGCACAAA
*
80657821 TGCCTTC-GGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTC-GGTCTTATCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
80657884 ATCAATTCGCACAAA
66 ATCAATTCGCACAAA
80657899 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
80657963 CATTCAAATG
Statistics
Matches: 357, Mismatches: 18, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
78 56 0.16
79 225 0.63
80 76 0.21
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (80 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
ATCAATTCGCACAAA
Found at i:80666208 original size:40 final size:40
Alignment explanation
Indices: 80666152--80666503 Score: 578
Period size: 40 Copynumber: 8.8 Consensus size: 40
80666142 AACATTGGAT
80666152 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
80666192 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
80666232 TATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
80666272 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
80666312 TATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
80666352 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
80666392 TATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
80666432 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTCA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
80666472 TATGTCCGGGTTAAGACCCGAAGGCAAATATG
1 TATATCCGGGCTAAGACCCGAAGGCAATTATG
80666504 TTTGCGGCTG
Statistics
Matches: 288, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 288 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:80673548 original size:40 final size:40
Alignment explanation
Indices: 80673492--80673843 Score: 578
Period size: 40 Copynumber: 8.8 Consensus size: 40
80673482 AACATTGGAT
80673492 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
80673532 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
80673572 TATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
80673612 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
80673652 TATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
80673692 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
80673732 TATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
80673772 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTCA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
80673812 TATGTCCGGGTTAAGACCCGAAGGCAAATATG
1 TATATCCGGGCTAAGACCCGAAGGCAATTATG
80673844 TTTGCGGCTG
Statistics
Matches: 288, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 288 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:80677040 original size:12 final size:12
Alignment explanation
Indices: 80677023--80677048 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
80677013 CACCCTCTTC
80677023 CTCTCCTCTTTT
1 CTCTCCTCTTTT
80677035 CTCTCCTCTTTT
1 CTCTCCTCTTTT
80677047 CT
1 CT
80677049 TTCTTTCTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (12 bp):
CTCTCCTCTTTT
Found at i:80677569 original size:11 final size:11
Alignment explanation
Indices: 80677545--80677578 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
80677535 GGTTGACGGA
80677545 GGAGTTCC-GT
1 GGAGTTCCGGT
80677555 GGAGTTCCGGT
1 GGAGTTCCGGT
*
80677566 GGAGTACCGGT
1 GGAGTTCCGGT
80677577 GG
1 GG
80677579 CATATTAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 8 0.36
11 14 0.64
ACGTcount: A:0.12, C:0.18, G:0.47, T:0.24
Consensus pattern (11 bp):
GGAGTTCCGGT
Found at i:80684637 original size:13 final size:13
Alignment explanation
Indices: 80684621--80684645 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80684611 AAATGACGTG
80684621 TGAAAATTTGATA
1 TGAAAATTTGATA
80684634 TGAAAATTTGAT
1 TGAAAATTTGAT
80684646 TGACTGAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (13 bp):
TGAAAATTTGATA
Found at i:80686707 original size:23 final size:23
Alignment explanation
Indices: 80686644--80686701 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
80686634 ACGTTTACCG
* *
80686644 CTATTAGCAGCTTTGTTGTGTTA
1 CTATTAGCAGCTTTGCTGCGTTA
*
80686667 CTACTAGCAGCTTTGCTGCGTTA
1 CTATTAGCAGCTTTGCTGCGTTA
80686690 CTATTAGCAGCT
1 CTATTAGCAGCT
80686702 ACGCTGTGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (23 bp):
CTATTAGCAGCTTTGCTGCGTTA
Found at i:80686851 original size:27 final size:26
Alignment explanation
Indices: 80686820--80686881 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 26
80686810 ATTGTGATTA
*
80686820 TACTGTTTGGGCATAGGCCCACACTG
1 TACTGTTAGGGCATAGGCCCACACTG
* * *
80686846 TTACTGCATAGGGCTTAGGCCCAGACTG
1 -TACTG-TTAGGGCATAGGCCCACACTG
80686874 TACTGTTA
1 TACTGTTA
80686882 CTACATAGGG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 10 0.34
28 17 0.59
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (26 bp):
TACTGTTAGGGCATAGGCCCACACTG
Found at i:80686864 original size:28 final size:29
Alignment explanation
Indices: 80686828--80686901 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 29
80686818 TATACTGTTT
* *
80686828 GGGCATAGGCCCAC-ACTGTTACTGCATA
1 GGGCTTAGGCCCACTACTGTTACTACATA
80686856 GGGCTTAGGCCCAGACTGTACTGTTACTACATA
1 GGGCTTAGGCCC--AC--TACTGTTACTACATA
80686889 GGGCTTAGGCCCA
1 GGGCTTAGGCCCA
80686902 GATTGTACTG
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
28 11 0.28
30 2 0.05
31 1 0.03
33 25 0.64
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (29 bp):
GGGCTTAGGCCCACTACTGTTACTACATA
Found at i:80686889 original size:33 final size:33
Alignment explanation
Indices: 80686842--80686914 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 33
80686832 ATAGGCCCAC
*
80686842 ACTGTTACTGCATAGGGCTTAGGCCCAGACTGT
1 ACTGTTACTACATAGGGCTTAGGCCCAGACTGT
*
80686875 ACTGTTACTACATAGGGCTTAGGCCCAGATTGT
1 ACTGTTACTACATAGGGCTTAGGCCCAGACTGT
80686908 ACTGTTA
1 ACTGTTA
80686915 TTGAATAGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (33 bp):
ACTGTTACTACATAGGGCTTAGGCCCAGACTGT
Found at i:80686923 original size:33 final size:33
Alignment explanation
Indices: 80686842--80686926 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
80686832 ATAGGCCCAC
*
80686842 ACTGTTACTGCATAGGGCTTAGGCCCAGACTGT
1 ACTGTTACTGAATAGGGCTTAGGCCCAGACTGT
*
80686875 ACTGTTACT-ACATAGGGCTTAGGCCCAGATTGT
1 ACTGTTACTGA-ATAGGGCTTAGGCCCAGACTGT
*
80686908 ACTGTTATTGAATAGGGCT
1 ACTGTTACTGAATAGGGCT
80686927 CAAGCCTAGA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
33 46 0.98
34 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.31
Consensus pattern (33 bp):
ACTGTTACTGAATAGGGCTTAGGCCCAGACTGT
Found at i:80689461 original size:23 final size:23
Alignment explanation
Indices: 80689435--80689479 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
80689425 GTTTACCGAT
*
80689435 TAGTAGCCTTGCTGTGTTACTAC
1 TAGTAGCCTTACTGTGTTACTAC
*
80689458 TAGTAGCTTTACTGTGTTACTA
1 TAGTAGCCTTACTGTGTTACTA
80689480 TTAGCAGCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (23 bp):
TAGTAGCCTTACTGTGTTACTAC
Found at i:80689672 original size:33 final size:33
Alignment explanation
Indices: 80689629--80689699 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
80689619 AGGCCCACAT
* * *
80689629 TGTTATTACATAAGGCTTAGGCCCAGACTGTAC
1 TGTTACTACATAAGGCTTAAGCCCAAACTGTAC
*
80689662 TGTTACTACATAGGGCTTAAGCCCAAACTGTAC
1 TGTTACTACATAAGGCTTAAGCCCAAACTGTAC
80689695 TGTTA
1 TGTTA
80689700 TTGAACAGGG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (33 bp):
TGTTACTACATAAGGCTTAAGCCCAAACTGTAC
Found at i:80692662 original size:47 final size:48
Alignment explanation
Indices: 80692609--80692838 Score: 184
Period size: 47 Copynumber: 4.9 Consensus size: 48
80692599 GGTAATTGCC
* *
80692609 GATGCCAT-TTCCAAACATGGTCTTACATTGGCTCACATGTCGAGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCT
* * * * * *
80692656 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTAAT-GTGGTT
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT-ATCGAGGCT
* * *** * * * * * *
80692704 GGTGCCATGTCCCTGGCACGGTCTTACACT-ACGCACATATCAATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCT
* * *
80692751 GATGCCATG-TCTCAAACATAGTCTTACAC-GGCTCTCATGTCGAGGCT
1 GATGCCATGTTC-CAAACATGGTCTTACACTGGCTCACATATCGAGGCT
* *
80692798 GAT-CCATGTTCCAAACATGGTCTTACACTGGTTCTCATATC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATC
80692839 ATGGCCAACG
Statistics
Matches: 138, Mismatches: 38, Indels: 14
0.73 0.20 0.07
Matches are distributed among these distances:
46 24 0.17
47 58 0.42
48 55 0.40
49 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCT
Found at i:80692679 original size:48 final size:48
Alignment explanation
Indices: 80692609--80692874 Score: 204
Period size: 48 Copynumber: 5.6 Consensus size: 48
80692599 GGTAATTGCC
* * * *
80692609 GATGCCAT-TTCCAAACATGGTCTTACATTGGCTCACATGTCGAGGCT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGCT
* * * *
80692656 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTAAT-GTGGTT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-ATCGAGGCT
* *** * * * * * * *
80692704 GGTGCCATGTCCCTGGCACGGTCTTACACT-ACGCACATATCAATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGCT
* * *
80692751 GATGCCATGTCTCAAACATAGTCTTACAC-GGCTCTCATGTCGAGGCT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGCT
* * *
80692798 GAT-CCATGTTCCAAACATGGTCTTACACTGGTTCTCATATC-ATGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGA-GGCT
* * *
80692845 AACGCCATG-CCCTAGACATGGTCTTACACT
1 GATGCCATGTCCC-AAACATGGTCTTACACT
80692875 AGCGCACCTG
Statistics
Matches: 166, Mismatches: 45, Indels: 15
0.73 0.20 0.07
Matches are distributed among these distances:
46 25 0.15
47 64 0.39
48 76 0.46
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGCT
Found at i:80692868 original size:141 final size:143
Alignment explanation
Indices: 80692605--80692881 Score: 348
Period size: 141 Copynumber: 2.0 Consensus size: 143
80692595 ATAGGGTAAT
* * *
80692605 TGCCGATGCCATTTCCAAACATGGTCTTACATTGGCTCACATGTCGAGGCTGATGCCATGTCCCA
1 TGCCGATGCCATGTCCAAACATAGTCTTACATCGGCTCACATGTCGAGGCTGATGCCATGTCCCA
* * * ***** *
80692670 GACATGGTCTTACACTGGCTCTCGTAATGTGGTTGGTGCCATGTCCCTGGCACGGTCTTACACTA
66 AACATGGTCTTACACTGGCTCTCATAATATGGCCAACGCCATGTCCCTGACACGGTCTTACACTA
80692735 -CGCACATATCAA
131 GCGCACATATCAA
* *
80692747 TGCCGATGCCATGTCTCAAACATAGTCTTACA-CGGCTCTCATGTCGAGGCTGAT-CCATGTTCC
1 TGCCGATGCCATGTC-CAAACATAGTCTTACATCGGCTCACATGTCGAGGCTGATGCCATGTCCC
* *
80692810 AAACATGGTCTTACACTGGTTCTCAT-ATCATGGCCAACGCCATG-CCCTAGACATGGTCTTACA
65 AAACATGGTCTTACACTGGCTCTCATAAT-ATGGCCAACGCCATGTCCCT-GACACGGTCTTACA
80692873 CTAGCGCAC
128 CTAGCGCAC
80692882 CTGTCACCCA
Statistics
Matches: 115, Mismatches: 16, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
140 6 0.05
141 55 0.48
142 39 0.34
143 15 0.13
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (143 bp):
TGCCGATGCCATGTCCAAACATAGTCTTACATCGGCTCACATGTCGAGGCTGATGCCATGTCCCA
AACATGGTCTTACACTGGCTCTCATAATATGGCCAACGCCATGTCCCTGACACGGTCTTACACTA
GCGCACATATCAA
Found at i:80693142 original size:20 final size:21
Alignment explanation
Indices: 80693112--80693155 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
80693102 GCCTCCCTGG
*
80693112 TCTAGGTCTGGATTTCGTATT
1 TCTAGGTCTGGATATCGTATT
80693133 TCTA-GTCTGGATATCGTATT
1 TCTAGGTCTGGATATCGTATT
80693153 TCT
1 TCT
80693156 TAATCTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.16, C:0.16, G:0.20, T:0.48
Consensus pattern (21 bp):
TCTAGGTCTGGATATCGTATT
Found at i:80707797 original size:43 final size:43
Alignment explanation
Indices: 80707705--80707808 Score: 118
Period size: 43 Copynumber: 2.4 Consensus size: 43
80707695 TATCCCAGAT
* * **
80707705 ATGGTCATACATGTTATCGCATATCGATGCCTCTGTCCCAAAC
1 ATGGTCTTACATGTAATCGCATATCGATGCCAATGTCCCAAAC
* * ** *
80707748 AGGGTCTTACATGTAATCTCATATCGATGCCAATGTCTTAGAC
1 ATGGTCTTACATGTAATCGCATATCGATGCCAATGTCCCAAAC
*
80707791 ATGGTCTTACATGAAATC
1 ATGGTCTTACATGTAATC
80707809 ACACCTCGAA
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCGCATATCGATGCCAATGTCCCAAAC
Found at i:80709674 original size:24 final size:25
Alignment explanation
Indices: 80709637--80709701 Score: 107
Period size: 25 Copynumber: 2.6 Consensus size: 25
80709627 TGGATAAGTT
80709637 GTAGAATTACCGAAATA-CCCTATAG
1 GTAGAA-TACCGAAATACCCCTATAG
80709662 GTAGAATACCGAAATACCCCTATAG
1 GTAGAATACCGAAATACCCCTATAG
80709687 GTAGAATA-CGAAATA
1 GTAGAATACCGAAATA
80709702 ATGAATAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
24 17 0.44
25 22 0.56
ACGTcount: A:0.43, C:0.18, G:0.17, T:0.22
Consensus pattern (25 bp):
GTAGAATACCGAAATACCCCTATAG
Found at i:80710470 original size:27 final size:26
Alignment explanation
Indices: 80710426--80710477 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
80710416 CTCGCTGCAA
*
80710426 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
80710453 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
80710478 CAGCCTCGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:80717208 original size:21 final size:22
Alignment explanation
Indices: 80717114--80717208 Score: 108
Period size: 21 Copynumber: 4.4 Consensus size: 22
80717104 ACCTAGAAAT
80717114 AATACCCTGTAGGTAGAATACA
1 AATACCCTGTAGGTAGAATACA
*
80717136 AATACCC--TAGATAGAATATCA
1 AATACCCTGTAGGTAGAATA-CA
*
80717157 AATACCCTGTAGGGTAGAATACG
1 AATACCCTGTA-GGTAGAATACA
*
80717180 AATA-CCTGTAGGTAGATTAC-
1 AATACCCTGTAGGTAGAATACA
*
80717200 GATACCCTG
1 AATACCCTG
80717209 GGGTAAAAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
20 13 0.21
21 22 0.35
22 13 0.21
23 7 0.11
24 8 0.13
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (22 bp):
AATACCCTGTAGGTAGAATACA
Found at i:80717969 original size:26 final size:27
Alignment explanation
Indices: 80717940--80717999 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
80717930 CCACATATAT
*
80717940 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
80717966 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
80717993 ATATCTG
1 ATATCTG
80718000 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:80719513 original size:27 final size:26
Alignment explanation
Indices: 80719465--80719545 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 26
80719455 GTGAGGCTGC
*
80719465 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
80719492 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
80719518 CAGATATATATATGACGAAGCCACCAGA
1 CAG--ATAT-TGTGACGAAGCCACCAGA
80719546 TTGCAGCGAG
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
26 4 0.09
27 21 0.49
28 4 0.09
29 14 0.33
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:80719583 original size:19 final size:19
Alignment explanation
Indices: 80719537--80719576 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
80719527 ATATGACGAA
80719537 GCCACCAGATTGCAGCGAG
1 GCCACCAGATTGCAGCGAG
80719556 GCCACCAGATTGCAGCGAG
1 GCCACCAGATTGCAGCGAG
80719575 GC
1 GC
80719577 TGCCAGAACG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.33, G:0.33, T:0.10
Consensus pattern (19 bp):
GCCACCAGATTGCAGCGAG
Found at i:80720267 original size:26 final size:27
Alignment explanation
Indices: 80720223--80720336 Score: 148
Period size: 26 Copynumber: 4.4 Consensus size: 27
80720213 AAGGCGAAAT
*
80720223 GGTAATT-TACCC-ACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
80720248 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
80720275 GGT-ATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
80720301 -GTAATTCTATCCTAC-AGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
80720326 AGTAATTCTAC
1 GGTAATTCTAC
80720337 AACTTATCCA
Statistics
Matches: 79, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
25 18 0.23
26 47 0.59
27 14 0.18
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:80723599 original size:19 final size:19
Alignment explanation
Indices: 80723575--80723613 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
80723565 AACCCAAATG
80723575 GCATAACCAAGAACTGATA
1 GCATAACCAAGAACTGATA
80723594 GCATAACCAAGAACTGATA
1 GCATAACCAAGAACTGATA
80723613 G
1 G
80723614 TGACCATACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.46, C:0.21, G:0.18, T:0.15
Consensus pattern (19 bp):
GCATAACCAAGAACTGATA
Found at i:80726964 original size:27 final size:27
Alignment explanation
Indices: 80726920--80727019 Score: 128
Period size: 27 Copynumber: 3.7 Consensus size: 27
80726910 TTCCCCACAA
* *
80726920 GGGTATCTCAGTAATTCTATCTTACAG
1 GGGTATTTCAGTAATTCTATCCTACAG
* * * *
80726947 GGGTATTTCTGTATTTCTACCCTACAA
1 GGGTATTTCAGTAATTCTATCCTACAG
*
80726974 GGGTATTTCGGTAATTCTATCCTACAG
1 GGGTATTTCAGTAATTCTATCCTACAG
*
80727001 GGGTATTTTAGTAATTCTA
1 GGGTATTTCAGTAATTCTA
80727020 CAACTTATAC
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.40
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTATCCTACAG
Found at i:80727019 original size:54 final size:54
Alignment explanation
Indices: 80726916--80727020 Score: 158
Period size: 54 Copynumber: 1.9 Consensus size: 54
80726906 CTTTTTCCCC
* *
80726916 ACAAGGGTATCTCAGTAATTCTATCTTACAGGGGTATTTCTGTATTTCTACCCT
1 ACAAGGGTATCTCAGTAATTCTATCCTACAGGGGTATTTCTGTAATTCTACCCT
* *
80726970 ACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTT-TAGTAATTCTAC
1 ACAAGGGTATCTCAGTAATTCTATCCTACAGGGGTATTTCT-GTAATTCTAC
80727021 AACTTATACA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
53 1 0.02
54 45 0.98
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (54 bp):
ACAAGGGTATCTCAGTAATTCTATCCTACAGGGGTATTTCTGTAATTCTACCCT
Found at i:80728691 original size:23 final size:25
Alignment explanation
Indices: 80728640--80728694 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 25
80728630 TTGATAAACA
80728640 ATAAGCTCTATTGAGATTGAAATAG
1 ATAAGCTCTATTGAGATTGAAATAG
*
80728665 -TAAGCTCT-TTCGAG-TTG-AATCG
1 ATAAGCTCTATT-GAGATTGAAATAG
80728687 ATAAGCTC
1 ATAAGCTC
80728695 AAATGAGCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 4 0.15
23 12 0.44
24 11 0.41
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (25 bp):
ATAAGCTCTATTGAGATTGAAATAG
Found at i:80734937 original size:29 final size:29
Alignment explanation
Indices: 80734900--80734995 Score: 104
Period size: 29 Copynumber: 3.3 Consensus size: 29
80734890 TGGGCCTAAC
80734900 GGGCCATATAAATGTGATTTGAGCTTAAT
1 GGGCCATATAAATGTGATTTGAGCTTAAT
* * * * *
80734929 GGGCAATATACAGGTGATTTGGGCCTAAT
1 GGGCCATATAAATGTGATTTGAGCTTAAT
* * * *
80734958 GGGCCATAGAAATATGA-CTGCGCTTAAT
1 GGGCCATATAAATGTGATTTGAGCTTAAT
80734986 GGGCCATATA
1 GGGCCATATA
80734996 TAGGTATGTG
Statistics
Matches: 53, Mismatches: 14, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
28 17 0.32
29 36 0.68
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (29 bp):
GGGCCATATAAATGTGATTTGAGCTTAAT
Found at i:80734962 original size:58 final size:57
Alignment explanation
Indices: 80734890--80735000 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
80734880 TGAATGCGTC
* * *
80734890 TGGGCCTAACGGGCCATATAAATGTGATTTGAGCTTAATGGGCAATATACAGGTGATT
1 TGGGCCTAACGGGCCATAGAAATATGA-CTGAGCTTAATGGGCAATATACAGGTGATT
* * * *
80734948 TGGGCCTAATGGGCCATAGAAATATGACTGCGCTTAATGGGCCATATATAGGT
1 TGGGCCTAACGGGCCATAGAAATATGACTGAGCTTAATGGGCAATATACAGGT
80735001 ATGTGAATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATAGAAATATGACTGAGCTTAATGGGCAATATACAGGTGATT
Found at i:80739420 original size:40 final size:40
Alignment explanation
Indices: 80739341--80739517 Score: 214
Period size: 40 Copynumber: 4.5 Consensus size: 40
80739331 CGGATGATAA
* * **
80739341 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* * * * *
80739381 TCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-CTATAT
*
80739421 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* *
80739461 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
*
80739501 CC-GGCTAAAACCCGAAG
1 CCGGGCTAAGACCCGAAG
80739518 ATACTTGGGT
Statistics
Matches: 118, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
39 16 0.14
40 100 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
Found at i:80739479 original size:80 final size:80
Alignment explanation
Indices: 80739341--80739517 Score: 250
Period size: 80 Copynumber: 2.2 Consensus size: 80
80739331 CGGATGATAA
* * * * *
80739341 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATTCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
80739406 TGCTAG-TGATTATAT
66 TGCGAGTTG-TTATAT
* *
80739421 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
80739486 TGCGAGTTGTTATAT
66 TGCGAGTTGTTATAT
*
80739501 CC-GGCTAAAACCCGAAG
1 CCGGGCTAAGACCCGAAG
80739518 ATACTTGGGT
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
79 14 0.16
80 71 0.82
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCGAGTTGTTATAT
Found at i:80739785 original size:22 final size:22
Alignment explanation
Indices: 80739745--80739786 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
80739735 GAATGTGCAT
*
80739745 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
80739767 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
80739787 TCAAAACTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:80742633 original size:17 final size:17
Alignment explanation
Indices: 80742611--80742644 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
80742601 CAGTGGGGGA
80742611 CTTAGTTTTCCTTAAGG
1 CTTAGTTTTCCTTAAGG
80742628 CTTAGTTTTCCTTAAGG
1 CTTAGTTTTCCTTAAGG
80742645 TCTCTCCTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.47
Consensus pattern (17 bp):
CTTAGTTTTCCTTAAGG
Found at i:80744598 original size:29 final size:29
Alignment explanation
Indices: 80744562--80744661 Score: 121
Period size: 29 Copynumber: 3.5 Consensus size: 29
80744552 TGAATGCGAC
*
80744562 TGGGCTTAACGGGCCATATAAATGTGATT
1 TGGGCTTAATGGGCCATATAAATGTGATT
** * *
80744591 TGGGCTTAATGGGTAATATACAGGTGATT
1 TGGGCTTAATGGGCCATATAAATGTGATT
* *
80744620 TGGGCCTAATGGGCCATATAAATATGA-T
1 TGGGCTTAATGGGCCATATAAATGTGATT
*
80744648 TGGGCTTAAAGGGC
1 TGGGCTTAATGGGC
80744662 TAGATACAGG
Statistics
Matches: 58, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
28 13 0.22
29 45 0.78
ACGTcount: A:0.28, C:0.12, G:0.30, T:0.30
Consensus pattern (29 bp):
TGGGCTTAATGGGCCATATAAATGTGATT
Found at i:80751510 original size:54 final size:54
Alignment explanation
Indices: 80751325--80751521 Score: 238
Period size: 55 Copynumber: 3.6 Consensus size: 54
80751315 AACTTACTAT
* * *
80751325 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCA-CGAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATC-AA
* * **
80751378 TTCCAAGCCTTGACATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAA
** * *
80751433 TGCCATTTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
*
80751487 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTT
80751522 ATCTTACCAA
Statistics
Matches: 122, Mismatches: 17, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
52 2 0.02
53 34 0.28
54 41 0.34
55 42 0.34
56 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
Found at i:80751555 original size:47 final size:47
Alignment explanation
Indices: 80751500--80751621 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
80751490 CATGCCTTGG
* *
80751500 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
80751547 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
80751594 CATGGTCTTACATGGTATCATTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
80751622 GTGCCAATGC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:80759250 original size:81 final size:81
Alignment explanation
Indices: 80759135--80759328 Score: 248
Period size: 81 Copynumber: 2.4 Consensus size: 81
80759125 TACTGAAATG
* * *
80759135 CCCTCGATTTGTAGAGTTACCATTTTACCCTCGATTTATAGAACTA-TCATTTCACCCTCGATTT
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAACTACT-ATTTCACCCTCGATTT
* *
80759199 ACGAAATTACCGTTTTA
65 ACAAAATTACCATTTTA
* * **
80759216 CCCTCGATTTATAGAATTACCATTATACCCTCGATTTACAGAATTACTATTTTTCCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAACTACTATTTCACCCTCGATTTA
80759281 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * *
80759297 CCCTC-AGTTTACAAAATTACCGTTTTACCCTC
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTC
80759329 AATTGTGAAA
Statistics
Matches: 98, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
80 1 0.01
81 96 0.98
82 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.08, T:0.38
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAACTACTATTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:80759329 original size:27 final size:27
Alignment explanation
Indices: 80759151--80759328 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
80759141 ATTTGTAGAG
* *
80759151 TTACCATTTTACCCTCGATTTATAGAA
1 TTACCATTTTACCCTCGATTTACAAAA
* * * *
80759178 CTATCATTTCACCCTCGATTTACGAAA
1 TTACCATTTTACCCTCGATTTACAAAA
* * *
80759205 TTACCGTTTTACCCTCGATTTATAGAA
1 TTACCATTTTACCCTCGATTTACAAAA
* *
80759232 TTACCATTATACCCTCGATTTACAGAA
1 TTACCATTTTACCCTCGATTTACAAAA
* *
80759259 TTACTATTTTTCCCTCGATTTACAAAA
1 TTACCATTTTACCCTCGATTTACAAAA
80759286 TTACCATTTTACCCTC-AGTTTACAAAA
1 TTACCATTTTACCCTCGA-TTTACAAAA
*
80759313 TTACCGTTTTACCCTC
1 TTACCATTTTACCCTC
80759329 AATTGTGAAA
Statistics
Matches: 127, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 1 0.01
27 126 0.99
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.39
Consensus pattern (27 bp):
TTACCATTTTACCCTCGATTTACAAAA
Found at i:80759394 original size:27 final size:27
Alignment explanation
Indices: 80759364--80759599 Score: 156
Period size: 27 Copynumber: 8.7 Consensus size: 27
80759354 TATAGGGTAG
80759364 AATTACCAAAATACCCTTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
80759391 AATTACCAAAATACCCCTAGCTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
** *
80759418 AATTACTGAAATACCAC-TAGTTTGTGA
1 AATTACCAAAATACC-CTTAGTTTGTAA
* * *
80759445 AATTACCAAAATACCCTCAATTTATAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * **
80759472 AATTACAAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCTTAG-TTTGTAA
* *
80759499 AATTA-CAGAAATACCCTTGACTTTCTAAA
1 AATTACCA-AAATACCCTT-AGTTTGT-AA
* * * **
80759528 AATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTTAGTTTGTAA
*** * *
80759555 AATTATTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
80759582 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
80759600 GTAGGATGAA
Statistics
Matches: 163, Mismatches: 38, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
26 2 0.01
27 135 0.83
28 8 0.05
29 18 0.11
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTGTAA
Found at i:80759406 original size:54 final size:54
Alignment explanation
Indices: 80759331--80759461 Score: 147
Period size: 54 Copynumber: 2.4 Consensus size: 54
80759321 TTACCCTCAA
** * *
80759331 TTGTGAAATTACTGAAATACCCTTATAGGGTAGAATTACCAAAATACC-CTTAGT
1 TTGTGAAATTACCAAAATACCCTTAGAGGGTAAAATTACCAAAATACCAC-TAGT
* * *** **
80759385 TTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACTGAAATACCACTAGT
1 TTGTGAAATTACCAAAATACCCTTAGAGGGTAAAATTACCAAAATACCACTAGT
80759439 TTGTGAAATTACCAAAATACCCT
1 TTGTGAAATTACCAAAATACCCT
80759462 CAATTTATAA
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
54 62 0.98
55 1 0.02
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (54 bp):
TTGTGAAATTACCAAAATACCCTTAGAGGGTAAAATTACCAAAATACCACTAGT
Found at i:80759501 original size:81 final size:81
Alignment explanation
Indices: 80759364--80759513 Score: 214
Period size: 81 Copynumber: 1.9 Consensus size: 81
80759354 TATAGGGTAG
* * * * * *
80759364 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACTGAAA
1 AATTACCAAAATACCCTCAATTTATAAAATTACAAAAATACCCCTAGATTGTAAAATTACAGAAA
80759429 TACCACTAGTTTGTGA
66 TACCACTAGTTTGTGA
80759445 AATTACCAAAATACCCTCAATTTATAAAATTACAAAAATACCCCT-GATT-TACAAAATTACAGA
1 AATTACCAAAATACCCTCAATTTATAAAATTACAAAAATACCCCTAGATTGT--AAAATTACAGA
80759508 AATACC
64 AATACC
80759514 CTTGACTTTC
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
79 1 0.02
80 3 0.05
81 57 0.93
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTATAAAATTACAAAAATACCCCTAGATTGTAAAATTACAGAAA
TACCACTAGTTTGTGA
Found at i:80760584 original size:52 final size:52
Alignment explanation
Indices: 80760494--80760646 Score: 210
Period size: 52 Copynumber: 3.0 Consensus size: 52
80760484 GAGGAAGTGC
*
80760494 AAAAGGGATTATG-CCTCAG-TTACCG-AAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCT-AGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
80760544 AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
* * * *
80760596 AAAATGGCTT-TGCCCCAGTTTTCTGAAAAGGGCTT-TGCCCCAG-TTATTG
1 AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
80760645 AA
1 AA
80760647 GAGGCTAGGC
Statistics
Matches: 95, Mismatches: 5, Indels: 7
0.89 0.05 0.07
Matches are distributed among these distances:
49 8 0.08
50 22 0.23
51 31 0.33
52 34 0.36
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
Found at i:80760615 original size:25 final size:26
Alignment explanation
Indices: 80760494--80760646 Score: 183
Period size: 26 Copynumber: 6.1 Consensus size: 26
80760484 GAGGAAGTGC
* * **
80760494 AAAAGGGATTATGCCTCAG-TTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
80760519 -AAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
80760544 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
80760570 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
80760596 AAAATGGCTT-TGCCCCAGTTT-TCTG
1 AAAAGGGCTTATGCCCCAGTTTAT-TG
80760621 AAAAGGGCTT-TGCCCCAG-TTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
80760645 AA
1 AA
80760647 GAGGCTAGGC
Statistics
Matches: 112, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
24 23 0.21
25 35 0.31
26 54 0.48
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:80760844 original size:42 final size:42
Alignment explanation
Indices: 80760785--80760876 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
80760775 TAGTCTCCCC
* ** *
80760785 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
80760827 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
80760869 AAATGGGC
1 AAATGGGC
80760877 CTAAGGGCAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:80760939 original size:31 final size:31
Alignment explanation
Indices: 80760904--80760976 Score: 137
Period size: 31 Copynumber: 2.4 Consensus size: 31
80760894 TACAGTAAAG
80760904 GCTTCGGCCCAATGATATGATTTATGAAAAA
1 GCTTCGGCCCAATGATATGATTTATGAAAAA
*
80760935 GCTTCGGCCCAATGATATGATTTATGAAAAG
1 GCTTCGGCCCAATGATATGATTTATGAAAAA
80760966 GCTTCGGCCCA
1 GCTTCGGCCCA
80760977 GTAACCATTC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (31 bp):
GCTTCGGCCCAATGATATGATTTATGAAAAA
Found at i:80763293 original size:53 final size:50
Alignment explanation
Indices: 80763236--80763399 Score: 170
Period size: 53 Copynumber: 3.1 Consensus size: 50
80763226 AGAGTTACCA
** *
80763236 TTTTACCTTCGATTTATAGAATACTGTTTCACCATCGATTTACAAAATTATCG
1 TTTTACC-TCGATTTATAGAATACCATTT-ACCCTCGATTTACAAAATTA-CG
*
80763289 TTTTA-CTCGATTTATAGAATTACCATTTACCCTCGATTTACAGAATTACTG
1 TTTTACCTCGATTTATAGAA-TACCATTTACCCTCGATTTACAAAATTAC-G
* * *
80763340 TTTCACCCTCGATTTACAAAATACCATTTTACCCTC-AGTTTACAAAATTACCG
1 TTTTA-CCTCGATTTATAGAATACCA-TTTACCCTCGA-TTTACAAAATTA-CG
80763393 TTTTACC
1 TTTTACC
80763400 GTCAATTGTG
Statistics
Matches: 95, Mismatches: 9, Indels: 15
0.80 0.08 0.13
Matches are distributed among these distances:
50 1 0.01
51 36 0.38
52 15 0.16
53 42 0.44
54 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.40
Consensus pattern (50 bp):
TTTTACCTCGATTTATAGAATACCATTTACCCTCGATTTACAAAATTACG
Found at i:80763312 original size:78 final size:78
Alignment explanation
Indices: 80763216--80763361 Score: 231
Period size: 78 Copynumber: 1.9 Consensus size: 78
80763206 CTGAAATGCC
* * * *
80763216 CTCGATTTGTAGAGTTACCATTTTACCTTCGATTTATAGAA-TACTGTTTCACCATCGATTTACA
1 CTCGATTTATAGAATTACCA-TTTACCCTCGATTTACAGAATTACTGTTTCACCATCGATTTACA
80763280 AAATTATCGTTTTA
65 AAATTATCGTTTTA
*
80763294 CTCGATTTATAGAATTACCATTTACCCTCGATTTACAGAATTACTGTTTCACCCTCGATTTACAA
1 CTCGATTTATAGAATTACCATTTACCCTCGATTTACAGAATTACTGTTTCACCATCGATTTACAA
80763359 AAT
66 AAT
80763362 ACCATTTTAC
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
77 18 0.29
78 44 0.71
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (78 bp):
CTCGATTTATAGAATTACCATTTACCCTCGATTTACAGAATTACTGTTTCACCATCGATTTACAA
AATTATCGTTTTA
Found at i:80763325 original size:51 final size:49
Alignment explanation
Indices: 80763244--80763398 Score: 159
Period size: 51 Copynumber: 3.0 Consensus size: 49
80763234 CATTTTACCT
** *
80763244 TCGATTTATAGAATACTGTTTCACCATCGATTTACAAAATTATCGTTTTAC
1 TCGATTTATAGAATACCATTT-ACCCTCGATTTACAAAATTA-CGTTTTAC
* *
80763295 TCGATTTATAGAATTACCATTTACCCTCGATTTACAGAATTACTGTTTCACCC
1 TCGATTTATAGAA-TACCATTTACCCTCGATTTACAAAATTAC-GTTTTA--C
* *
80763348 TCGATTTACAAAATACCATTTTACCCTC-AGTTTACAAAATTACCGTTTTAC
1 TCGATTTATAGAATACCA-TTTACCCTCGA-TTTACAAAATTA-CGTTTTAC
80763399 CGTCAATTGT
Statistics
Matches: 88, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
50 1 0.01
51 37 0.42
52 12 0.14
53 37 0.42
54 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (49 bp):
TCGATTTATAGAATACCATTTACCCTCGATTTACAAAATTACGTTTTAC
Found at i:80763399 original size:27 final size:27
Alignment explanation
Indices: 80763230--80763399 Score: 154
Period size: 26 Copynumber: 6.5 Consensus size: 27
80763220 ATTTGTAGAG
* * * *
80763230 TTACCATTTTACCTTCGATTTATAGAA
1 TTACCGTTTTACCCTCGATTTACAAAA
* * *
80763257 -TACTGTTTCACCATCGATTTACAAAA
1 TTACCGTTTTACCCTCGATTTACAAAA
* * *
80763283 TTATCGTTTTA--CTCGATTTATAGAA
1 TTACCGTTTTACCCTCGATTTACAAAA
* *
80763308 TTACC-ATTTACCCTCGATTTACAGAA
1 TTACCGTTTTACCCTCGATTTACAAAA
* *
80763334 TTACTGTTTCACCCTCGATTTACAAAA
1 TTACCGTTTTACCCTCGATTTACAAAA
*
80763361 -TACCATTTTACCCTC-AGTTTACAAAA
1 TTACCGTTTTACCCTCGA-TTTACAAAA
80763387 TTACCGTTTTACC
1 TTACCGTTTTACC
80763400 GTCAATTGTG
Statistics
Matches: 114, Mismatches: 23, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
24 4 0.04
25 16 0.14
26 58 0.51
27 36 0.32
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (27 bp):
TTACCGTTTTACCCTCGATTTACAAAA
Found at i:80763519 original size:78 final size:79
Alignment explanation
Indices: 80763437--80763581 Score: 215
Period size: 78 Copynumber: 1.8 Consensus size: 79
80763427 TTGTAGATAG
* * *
80763437 AATTACCAAAATACCCT-AGTTTGTAAAATTACCAAAATACCCCTAGCTT-GAAAATTAC-GAAA
1 AATTACCAAAATACCCTCAATTTATAAAATTA-CAAAATACCCCT-GCTTACAAAATTACAGAAA
80763499 TACCACTGGTTTGTGA
64 TACCACTGGTTTGTGA
*
80763515 AATTACCAAAATACCCTCAATTTATAAAATTACAAAATACCCCTGTTTACAAAATTACAGAAATA
1 AATTACCAAAATACCCTCAATTTATAAAATTACAAAATACCCCTGCTTACAAAATTACAGAAATA
80763580 CC
66 CC
80763582 CTTGACTTTC
Statistics
Matches: 60, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
77 3 0.05
78 37 0.62
79 20 0.33
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (79 bp):
AATTACCAAAATACCCTCAATTTATAAAATTACAAAATACCCCTGCTTACAAAATTACAGAAATA
CCACTGGTTTGTGA
Found at i:80763526 original size:27 final size:26
Alignment explanation
Indices: 80763437--80763583 Score: 142
Period size: 26 Copynumber: 5.7 Consensus size: 26
80763427 TTGTAGATAG
80763437 AATTACCAAAATACCCTAGTTTGTAA
1 AATTACCAAAATACCCTAGTTTGTAA
*
80763463 AATTACCAAAATACCCCTAGCTTG-AA
1 AATTACCAAAATA-CCCTAGTTTGTAA
* * *
80763489 AATTA-CGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACC-CTAGTTTGTAA
* *
80763515 AATTACCAAAATACCCTCAATTTATAA
1 AATTACCAAAATACCCT-AGTTTGTAA
**
80763542 AATTA-CAAAATACCCCT-GTTTACAA
1 AATTACCAAAATA-CCCTAGTTTGTAA
80763567 AATTA-CAGAAATACCCT
1 AATTACCA-AAATACCCT
80763584 TGACTTTCTA
Statistics
Matches: 102, Mismatches: 12, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
24 2 0.02
25 29 0.28
26 40 0.39
27 31 0.30
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (26 bp):
AATTACCAAAATACCCTAGTTTGTAA
Found at i:80763570 original size:52 final size:52
Alignment explanation
Indices: 80763437--80763639 Score: 153
Period size: 52 Copynumber: 3.8 Consensus size: 52
80763427 TTGTAGATAG
* ** ** *
80763437 AATTACCAAAATACC-CTAGTTTGTAAAATTACCAAAATACCC-CTAGCTTGAA
1 AATTA-CAAAATACCACTGGTTTACAAAATTACCAAAATACCCTC-AATTTTAA
* ***
80763489 AATTACGAAATACCACTGGTTTGTGAAATTACCAAAATACCCTCAATTTATAA
1 AATTACAAAATACCACTGGTTTACAAAATTACCAAAATACCCTCAATTT-TAA
* * *
80763542 AATTACAAAATACCCCT-GTTTACAAAATTA-CAGAAATACCCTTGACTTTCTAAA
1 AATTACAAAATACCACTGGTTTACAAAATTACCA-AAATACCC-TCAATTT-T-AA
* * **
80763596 AATTATAGAAATACCATTGGTTTACAAAATTACTGAAATACCCT
1 AATTACA-AAATACCACTGGTTTACAAAATTACCAAAATACCCT
80763640 TGGTTTGTAG
Statistics
Matches: 123, Mismatches: 19, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
51 10 0.08
52 51 0.41
53 24 0.20
54 8 0.07
55 9 0.07
56 21 0.17
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (52 bp):
AATTACAAAATACCACTGGTTTACAAAATTACCAAAATACCCTCAATTTTAA
Found at i:80763633 original size:27 final size:27
Alignment explanation
Indices: 80763487--80763645 Score: 105
Period size: 27 Copynumber: 5.9 Consensus size: 27
80763477 CCCTAGCTTG
**
80763487 AAAATTAC-GAAATACCAC-TGGTTTGT
1 AAAATTACTGAAATACC-CTTGGTTTAC
* ** *** *
80763513 GAAATTACCAAAATACCCTCAATTTAT
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
80763540 AAAATTAC-AAAATACCCCT-GTTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
80763565 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACTGAAATACCCTTG-GTTTAC
*
80763592 TAAAAATTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
80763621 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
80763646 GTAGATTTAC
Statistics
Matches: 105, Mismatches: 18, Indels: 19
0.74 0.13 0.13
Matches are distributed among these distances:
25 12 0.11
26 26 0.25
27 41 0.39
28 7 0.07
29 19 0.18
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:80764517 original size:16 final size:16
Alignment explanation
Indices: 80764496--80764526 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80764486 CAAATATGGG
*
80764496 CATGACATTTTGCATA
1 CATGACATGTTGCATA
80764512 CATGACATGTTGCAT
1 CATGACATGTTGCAT
80764527 TGGGTTGGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:80764589 original size:26 final size:26
Alignment explanation
Indices: 80764560--80764707 Score: 194
Period size: 26 Copynumber: 5.8 Consensus size: 26
80764550 GAGGAAGTGC
* * *
80764560 AAAAGGGATTATGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
80764586 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
* *
80764612 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
80764638 AAAAGGGCTTATG-CCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
* *
80764663 AAAATGGCTT-TGCCCCAGTTTTCTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
80764688 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
80764708 ATTGAAGAGG
Statistics
Matches: 107, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
24 2 0.02
25 47 0.44
26 58 0.54
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACTG
Found at i:80764638 original size:52 final size:52
Alignment explanation
Indices: 80764560--80764713 Score: 219
Period size: 52 Copynumber: 3.0 Consensus size: 52
80764550 GAGGAAGTGC
*
80764560 AAAAGGGATTATG-CCTCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCT-AGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
80764612 AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTATG-CCCAGTTTATTG
1 AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
* * * *
80764663 AAAATGGCTT-TGCCCCAGTTTTCTGAAAAGGGCTT-TGCCCCAG-TTATTG
1 AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
80764712 AA
1 AA
80764714 GAGGCTAGGC
Statistics
Matches: 95, Mismatches: 5, Indels: 7
0.89 0.05 0.07
Matches are distributed among these distances:
49 10 0.11
50 27 0.28
51 21 0.22
52 34 0.36
53 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
Found at i:80764911 original size:42 final size:42
Alignment explanation
Indices: 80764852--80764943 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
80764842 TAGTCTCCCC
* ** *
80764852 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
80764894 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
80764936 AAATGGGC
1 AAATGGGC
80764944 CTAAGGGCAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:80765006 original size:31 final size:31
Alignment explanation
Indices: 80764971--80765043 Score: 137
Period size: 31 Copynumber: 2.4 Consensus size: 31
80764961 TACAGTAAAG
80764971 GCTTCGGCCCAATGATATGATTTATGAAAAA
1 GCTTCGGCCCAATGATATGATTTATGAAAAA
*
80765002 GCTTCGGCCCAATGATATGATTTATGAAAAG
1 GCTTCGGCCCAATGATATGATTTATGAAAAA
80765033 GCTTCGGCCCA
1 GCTTCGGCCCA
80765044 GTAACCATTC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (31 bp):
GCTTCGGCCCAATGATATGATTTATGAAAAA
Found at i:80767317 original size:27 final size:27
Alignment explanation
Indices: 80767287--80767474 Score: 137
Period size: 27 Copynumber: 7.0 Consensus size: 27
80767277 TGAAATGCCC
* *
80767287 TCGATTTGTAGAGTTACCATTTTACCT
1 TCGATTTATAGAATTACCATTTTACCT
** * *
80767314 TCGATTTATAGAATTACTGTTTCACCA
1 TCGATTTATAGAATTACCATTTTACCT
* * * *
80767341 TCGATTTACAAAATTATCGTTTTA-CT
1 TCGATTTATAGAATTACCATTTTACCT
*
80767367 ATCGATTTATAGAATTACCATTTTACCC
1 -TCGATTTATAGAATTACCATTTTACCT
* ** * *
80767395 TCGATTTACAGAATTACTGTTTCACCC
1 TCGATTTATAGAATTACCATTTTACCT
* * * *
80767422 TCGATTTACAAAAATACCATTTTACCC
1 TCGATTTATAGAATTACCATTTTACCT
* * *
80767449 TC-AGTTTACAAAATTACCGTTTTACC
1 TCGA-TTTATAGAATTACCATTTTACC
80767475 GTCAATTGTG
Statistics
Matches: 130, Mismatches: 28, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
26 2 0.02
27 127 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (27 bp):
TCGATTTATAGAATTACCATTTTACCT
Found at i:80767364 original size:54 final size:53
Alignment explanation
Indices: 80767306--80767474 Score: 189
Period size: 54 Copynumber: 3.1 Consensus size: 53
80767296 AGAGTTACCA
** * *
80767306 TTTTACCTTCGATTTATAGAATTACTGTTTCACCATCGATTTACAAAATTATCG
1 TTTTACCTTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTA-CG
*
80767360 TTTTA-CTATCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTG
1 TTTTACCT-TCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTAC-G
* * * * *
80767414 TTTCACCCTCGATTTACAAAAATACCATTTTACCCTC-AGTTTACAAAATTACCG
1 TTTTACCTTCGATTTATAGAATTACCATTTTACCCTCGA-TTTACAAAATTA-CG
80767468 TTTTACC
1 TTTTACC
80767475 GTCAATTGTG
Statistics
Matches: 98, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
53 4 0.04
54 92 0.94
55 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (53 bp):
TTTTACCTTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACG
Found at i:80767445 original size:81 final size:81
Alignment explanation
Indices: 80767287--80767446 Score: 248
Period size: 81 Copynumber: 2.0 Consensus size: 81
80767277 TGAAATGCCC
* * * *
80767287 TCGATTTGTAGAGTTACCATTTTACCTTCGATTTATAGAATTACTGTTTCACCATCGATTTACAA
1 TCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCATCGATTTACAA
* * *
80767352 AATTATCGTTTTACTA
66 AAATACCATTTTACTA
*
80767368 TCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCCTCGATTTACAA
1 TCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCATCGATTTACAA
80767433 AAATACCATTTTAC
66 AAATACCATTTTAC
80767447 CCTCAGTTTA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (81 bp):
TCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCATCGATTTACAA
AAATACCATTTTACTA
Found at i:80767464 original size:81 final size:81
Alignment explanation
Indices: 80767300--80767474 Score: 235
Period size: 81 Copynumber: 2.2 Consensus size: 81
80767290 ATTTGTAGAG
* * * * *
80767300 TTACCATTTTACCTTCGATTTATAGAATTACTGTTTCACCATCGATTTACAAAATTATCGTTTTA
1 TTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCATCGATTTACAAAAATACCATTTTA
* * *
80767365 CTATCGATTTATAGAA
66 CCATCGATTTACAAAA
*
80767381 TTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCCTCGATTTACAAAAATACCATTTTA
1 TTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCATCGATTTACAAAAATACCATTTTA
*
80767446 CCCTC-AGTTTACAAAA
66 CCATCGA-TTTACAAAA
*
80767462 TTACCGTTTTACC
1 TTACCATTTTACC
80767475 GTCAATTGTG
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 1 0.01
81 81 0.99
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.40
Consensus pattern (81 bp):
TTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCATCGATTTACAAAAATACCATTTTA
CCATCGATTTACAAAA
Found at i:80767543 original size:27 final size:27
Alignment explanation
Indices: 80767513--80767663 Score: 171
Period size: 27 Copynumber: 5.6 Consensus size: 27
80767503 TGTAAGATAG
80767513 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
80767540 AATTACCAAAATACCCCTAGCTTGAAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
80767567 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
80767594 AATTACCAAAATA-CCCTCAATTTATAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
* **
80767621 AATTACCAAAATACCCCTGGTTTACAA
1 AATTACCAAAATACCCCTAGTTTGTAA
80767648 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
80767664 TTGACTTTCT
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 5 0.05
27 95 0.91
28 4 0.04
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.26
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:80767553 original size:54 final size:54
Alignment explanation
Indices: 80767480--80767666 Score: 168
Period size: 54 Copynumber: 3.5 Consensus size: 54
80767470 TTACCGTCAA
* ** * *
80767480 TTGTGAAATTACTGAAATACCCTTGTAAGATAGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCTTGTAAGATAAAATTACCAAAATACCCCTGGT
* * * *
80767534 TTGTAAAATTACCAAAATACCCCTAGCT-TGA-AAAATTACCGAAATACCACTGGT
1 TTGTAAAATTACCAAAATA-CCCTTG-TAAGATAAAATTACCAAAATACCCCTGGT
* * *
80767588 TTGTGAAATTACCAAAATACCC-T-CAATTTATAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCTTGTAA--GATAAAATTACCAAAATACCCCTGGT
**
80767642 TTACAAAATTA-CAGAAATACCCTTG
1 TTGTAAAATTACCA-AAATACCCTTG
80767667 ACTTTCTAAA
Statistics
Matches: 105, Mismatches: 19, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
53 6 0.06
54 90 0.86
55 8 0.08
56 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCTTGTAAGATAAAATTACCAAAATACCCCTGGT
Found at i:80767600 original size:81 final size:81
Alignment explanation
Indices: 80767513--80767662 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 81
80767503 TGTAAGATAG
* * *
80767513 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAGCTTGA-AAAATTACCGA
1 AATTACCAAAATACCCTC-AATTTATAAAATTACCAAAATACCCCT-GCTTGACAAAATTACAGA
80767576 AATACCACTGGTTTGTGA
64 AATACCACTGGTTTGTGA
* *
80767594 AATTACCAAAATACCCTCAATTTATAAAATTACCAAAATACCCCTGGTTTACAAAATTACAGAAA
1 AATTACCAAAATACCCTCAATTTATAAAATTACCAAAATACCCCTGCTTGACAAAATTACAGAAA
80767659 TACC
66 TACC
80767663 CTTGACTTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
80 4 0.06
81 57 0.92
82 1 0.02
ACGTcount: A:0.43, C:0.23, G:0.08, T:0.27
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTATAAAATTACCAAAATACCCCTGCTTGACAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:80767714 original size:27 final size:27
Alignment explanation
Indices: 80767565--80767726 Score: 114
Period size: 27 Copynumber: 5.9 Consensus size: 27
80767555 CCTAGCTTGA
* **
80767565 AAAATTACCGAAATACCAC-TGGTTTGT
1 AAAATTACTGAAATACC-CTTGGTTTAC
* ** *** *
80767592 GAAATTACCAAAATACCCTCAATTTAT
1 AAAATTACTGAAATACCCTTGGTTTAC
** *
80767619 AAAATTACCAAAATACCCCTGGTTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
80767646 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACTGAAATACCCTTG-GTTTAC
*
80767673 TAAAAATTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
80767702 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
80767727 GTAGATTTAC
Statistics
Matches: 108, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 81 0.75
28 7 0.06
29 19 0.18
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:80767844 original size:27 final size:27
Alignment explanation
Indices: 80767781--80767844 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
80767771 CCCCTAATAA
* *
80767781 GTAAAAAGACCGTAAAGCCCCTGTAGG
1 GTAAAATGACCGTAAAGCCCCTGTACG
* *
80767808 GTAAAGTGACCGTAATA-CCCTTGTACG
1 GTAAAATGACCGTAA-AGCCCCTGTACG
80767835 GTAAAATGAC
1 GTAAAATGAC
80767845 GAATATGCAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
GTAAAATGACCGTAAAGCCCCTGTACG
Found at i:80768602 original size:16 final size:16
Alignment explanation
Indices: 80768581--80768611 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80768571 CAAATATGGG
*
80768581 CATGACATTTTGCATA
1 CATGACATGTTGCATA
80768597 CATGACATGTTGCAT
1 CATGACATGTTGCAT
80768612 TGGGTTGGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:80768674 original size:26 final size:26
Alignment explanation
Indices: 80768645--80768793 Score: 203
Period size: 26 Copynumber: 5.8 Consensus size: 26
80768635 GAGGAAGTGC
* * *
80768645 AAAAGGGATTATGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
80768671 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
* *
80768697 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
80768723 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
* *
80768749 AAAATGGCTT-TGCCCCAGTTTTCTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
80768774 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
80768794 ATTGAAGAGG
Statistics
Matches: 109, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
25 32 0.29
26 77 0.71
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACTG
Found at i:80768723 original size:52 final size:52
Alignment explanation
Indices: 80768645--80768799 Score: 228
Period size: 52 Copynumber: 3.0 Consensus size: 52
80768635 GAGGAAGTGC
*
80768645 AAAAGGGATTATG-CCTCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCT-AGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
80768697 AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
* * * *
80768749 AAAATGGCTT-TGCCCCAGTTTTCTGAAAAGGGCTT-TGCCCCAG-TTATTG
1 AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
80768798 AA
1 AA
80768800 GAGGCTAGGC
Statistics
Matches: 97, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
49 8 0.08
50 8 0.08
51 22 0.23
52 56 0.58
53 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
Done.