Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 238 of 373
Found at i:80768997 original size:42 final size:42
Alignment explanation
Indices: 80768938--80769029 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
80768928 TAGTCTCCCC
* ** *
80768938 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
*
80768980 AAATGGGCTTGCATACATCCATTGACATTACATTTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
80769022 AAATGGGC
1 AAATGGGC
80769030 CTAAGGGCAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:80769092 original size:31 final size:31
Alignment explanation
Indices: 80769057--80769129 Score: 137
Period size: 31 Copynumber: 2.4 Consensus size: 31
80769047 TACAGTAAAG
80769057 GCTTCGGCCCAATGATATGATTTATGAAAAA
1 GCTTCGGCCCAATGATATGATTTATGAAAAA
*
80769088 GCTTCGGCCCAATGATATGATTTATGAAAAG
1 GCTTCGGCCCAATGATATGATTTATGAAAAA
80769119 GCTTCGGCCCA
1 GCTTCGGCCCA
80769130 GTAACCATTC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (31 bp):
GCTTCGGCCCAATGATATGATTTATGAAAAA
Found at i:80771410 original size:27 final size:27
Alignment explanation
Indices: 80771380--80771567 Score: 137
Period size: 27 Copynumber: 7.0 Consensus size: 27
80771370 TGAAATGCCC
* *
80771380 TCGATTTGTAGAGTTACCATTTTACCT
1 TCGATTTATAGAATTACCATTTTACCT
** * *
80771407 TCGATTTATAGAATTACTGTTTCACCA
1 TCGATTTATAGAATTACCATTTTACCT
* * * *
80771434 TCGATTTACAAAATTATCGTTTTA-CT
1 TCGATTTATAGAATTACCATTTTACCT
*
80771460 ATCGATTTATAGAATTACCATTTTACCC
1 -TCGATTTATAGAATTACCATTTTACCT
* ** * *
80771488 TCGATTTACAGAATTACTGTTTCACCC
1 TCGATTTATAGAATTACCATTTTACCT
* * * *
80771515 TCGATTTACAAAAATACCATTTTACCC
1 TCGATTTATAGAATTACCATTTTACCT
* * *
80771542 TC-AGTTTACAAAATTACCGTTTTACC
1 TCGA-TTTATAGAATTACCATTTTACC
80771568 GTCAATTGTG
Statistics
Matches: 130, Mismatches: 28, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
26 2 0.02
27 127 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (27 bp):
TCGATTTATAGAATTACCATTTTACCT
Found at i:80771457 original size:54 final size:53
Alignment explanation
Indices: 80771399--80771567 Score: 189
Period size: 54 Copynumber: 3.1 Consensus size: 53
80771389 AGAGTTACCA
** * *
80771399 TTTTACCTTCGATTTATAGAATTACTGTTTCACCATCGATTTACAAAATTATCG
1 TTTTACCTTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTA-CG
*
80771453 TTTTA-CTATCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTG
1 TTTTACCT-TCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTAC-G
* * * * *
80771507 TTTCACCCTCGATTTACAAAAATACCATTTTACCCTC-AGTTTACAAAATTACCG
1 TTTTACCTTCGATTTATAGAATTACCATTTTACCCTCGA-TTTACAAAATTA-CG
80771561 TTTTACC
1 TTTTACC
80771568 GTCAATTGTG
Statistics
Matches: 98, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
53 4 0.04
54 92 0.94
55 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (53 bp):
TTTTACCTTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACG
Found at i:80771538 original size:81 final size:81
Alignment explanation
Indices: 80771380--80771539 Score: 248
Period size: 81 Copynumber: 2.0 Consensus size: 81
80771370 TGAAATGCCC
* * * *
80771380 TCGATTTGTAGAGTTACCATTTTACCTTCGATTTATAGAATTACTGTTTCACCATCGATTTACAA
1 TCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCATCGATTTACAA
* * *
80771445 AATTATCGTTTTACTA
66 AAATACCATTTTACTA
*
80771461 TCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCCTCGATTTACAA
1 TCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCATCGATTTACAA
80771526 AAATACCATTTTAC
66 AAATACCATTTTAC
80771540 CCTCAGTTTA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (81 bp):
TCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCATCGATTTACAA
AAATACCATTTTACTA
Found at i:80771557 original size:81 final size:81
Alignment explanation
Indices: 80771393--80771567 Score: 235
Period size: 81 Copynumber: 2.2 Consensus size: 81
80771383 ATTTGTAGAG
* * * * *
80771393 TTACCATTTTACCTTCGATTTATAGAATTACTGTTTCACCATCGATTTACAAAATTATCGTTTTA
1 TTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCATCGATTTACAAAAATACCATTTTA
* * *
80771458 CTATCGATTTATAGAA
66 CCATCGATTTACAAAA
*
80771474 TTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCCTCGATTTACAAAAATACCATTTTA
1 TTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCATCGATTTACAAAAATACCATTTTA
*
80771539 CCCTC-AGTTTACAAAA
66 CCATCGA-TTTACAAAA
*
80771555 TTACCGTTTTACC
1 TTACCATTTTACC
80771568 GTCAATTGTG
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 1 0.01
81 81 0.99
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.40
Consensus pattern (81 bp):
TTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCATCGATTTACAAAAATACCATTTTA
CCATCGATTTACAAAA
Found at i:80771636 original size:27 final size:27
Alignment explanation
Indices: 80771606--80771756 Score: 171
Period size: 27 Copynumber: 5.6 Consensus size: 27
80771596 TGTAAGATAG
80771606 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
80771633 AATTACCAAAATACCCCTAGCTTGAAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
80771660 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
80771687 AATTACCAAAATA-CCCTCAATTTATAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
* **
80771714 AATTACCAAAATACCCCTGGTTTACAA
1 AATTACCAAAATACCCCTAGTTTGTAA
80771741 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
80771757 TTGACTTTCT
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 5 0.05
27 95 0.91
28 4 0.04
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.26
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:80771646 original size:54 final size:54
Alignment explanation
Indices: 80771573--80771759 Score: 168
Period size: 54 Copynumber: 3.5 Consensus size: 54
80771563 TTACCGTCAA
* ** * *
80771573 TTGTGAAATTACTGAAATACCCTTGTAAGATAGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCTTGTAAGATAAAATTACCAAAATACCCCTGGT
* * * *
80771627 TTGTAAAATTACCAAAATACCCCTAGCT-TGA-AAAATTACCGAAATACCACTGGT
1 TTGTAAAATTACCAAAATA-CCCTTG-TAAGATAAAATTACCAAAATACCCCTGGT
* * *
80771681 TTGTGAAATTACCAAAATACCC-T-CAATTTATAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCTTGTAA--GATAAAATTACCAAAATACCCCTGGT
**
80771735 TTACAAAATTA-CAGAAATACCCTTG
1 TTGTAAAATTACCA-AAATACCCTTG
80771760 ACTTTCTAAA
Statistics
Matches: 105, Mismatches: 19, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
53 6 0.06
54 90 0.86
55 8 0.08
56 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCTTGTAAGATAAAATTACCAAAATACCCCTGGT
Found at i:80771693 original size:81 final size:81
Alignment explanation
Indices: 80771606--80771755 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 81
80771596 TGTAAGATAG
* * *
80771606 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAGCTTGA-AAAATTACCGA
1 AATTACCAAAATACCCTC-AATTTATAAAATTACCAAAATACCCCT-GCTTGACAAAATTACAGA
80771669 AATACCACTGGTTTGTGA
64 AATACCACTGGTTTGTGA
* *
80771687 AATTACCAAAATACCCTCAATTTATAAAATTACCAAAATACCCCTGGTTTACAAAATTACAGAAA
1 AATTACCAAAATACCCTCAATTTATAAAATTACCAAAATACCCCTGCTTGACAAAATTACAGAAA
80771752 TACC
66 TACC
80771756 CTTGACTTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
80 4 0.06
81 57 0.92
82 1 0.02
ACGTcount: A:0.43, C:0.23, G:0.08, T:0.27
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTATAAAATTACCAAAATACCCCTGCTTGACAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:80771807 original size:27 final size:27
Alignment explanation
Indices: 80771658--80771819 Score: 114
Period size: 27 Copynumber: 5.9 Consensus size: 27
80771648 CCTAGCTTGA
* **
80771658 AAAATTACCGAAATACCAC-TGGTTTGT
1 AAAATTACTGAAATACC-CTTGGTTTAC
* ** *** *
80771685 GAAATTACCAAAATACCCTCAATTTAT
1 AAAATTACTGAAATACCCTTGGTTTAC
** *
80771712 AAAATTACCAAAATACCCCTGGTTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
80771739 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACTGAAATACCCTTG-GTTTAC
*
80771766 TAAAAATTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
80771795 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
80771820 GTAGATTTAC
Statistics
Matches: 108, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 81 0.75
28 7 0.06
29 19 0.18
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:80771937 original size:27 final size:27
Alignment explanation
Indices: 80771874--80771937 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
80771864 CCCCTAATAA
* *
80771874 GTAAAAAGACCGTAAAGCCCCTGTAGG
1 GTAAAATGACCGTAAAGCCCCTGTACG
* *
80771901 GTAAAGTGACCGTAATA-CCCTTGTACG
1 GTAAAATGACCGTAA-AGCCCCTGTACG
80771928 GTAAAATGAC
1 GTAAAATGAC
80771938 GAATATGCCC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
GTAAAATGACCGTAAAGCCCCTGTACG
Found at i:80772766 original size:26 final size:26
Alignment explanation
Indices: 80772737--80772885 Score: 221
Period size: 26 Copynumber: 5.8 Consensus size: 26
80772727 GAGGAAGTGC
80772737 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
80772763 AAAAGGGCTGATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
80772789 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
80772815 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
80772841 AAAAGGGCTT-TGCCCCAGTTTTCCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
80772866 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
80772886 ATTAAAGAGG
Statistics
Matches: 110, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 32 0.29
26 78 0.71
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:80772815 original size:52 final size:51
Alignment explanation
Indices: 80772737--80772885 Score: 246
Period size: 52 Copynumber: 2.9 Consensus size: 51
80772727 GAGGAAGTGC
80772737 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTGATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCT-ATGCCCCAGTTTATTG
*
80772789 AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGC-TATGCCCCAGTTTATTG
* *
80772841 AAAAGGGCTT-TGCCCCAGTTTTCCGAAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTATGCCCCAGTT
80772886 ATTAAAGAGG
Statistics
Matches: 92, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
50 11 0.12
51 21 0.23
52 59 0.64
53 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTATGCCCCAGTTTATTG
Found at i:80773089 original size:42 final size:42
Alignment explanation
Indices: 80773030--80773121 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
80773020 TAGTCTCCCC
* ** *
80773030 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
80773072 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
80773114 AAATGGGC
1 AAATGGGC
80773122 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:80773217 original size:31 final size:31
Alignment explanation
Indices: 80773145--80773220 Score: 145
Period size: 30 Copynumber: 2.5 Consensus size: 31
80773135 CGTTTACAGT
80773145 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
80773176 AAA-GCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
80773206 AAAGGCTTCGGCCCA
1 AAAGGCTTCGGCCCA
80773221 GTAACCATTC
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 30 0.68
31 14 0.32
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGATTTATGA
Found at i:80775501 original size:27 final size:27
Alignment explanation
Indices: 80775468--80775658 Score: 159
Period size: 27 Copynumber: 7.1 Consensus size: 27
80775458 TACTGAAATG
* *
80775468 CCCTCGATTTGTAGAGTTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* ** *
80775495 CCTTCGATTTATAGAATTACTGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
80775522 CCCTCGATTTACAAAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
**
80775549 CTATCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* ** *
80775576 CCCTCGATTTACAGAATTACTGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
80775603 CCCTCGATTTACAAAAATACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
80775630 TCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
80775657 CC
1 CC
80775659 GTCAATTGTG
Statistics
Matches: 130, Mismatches: 33, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
26 1 0.01
27 129 0.99
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:80775548 original size:54 final size:53
Alignment explanation
Indices: 80775490--80775658 Score: 189
Period size: 54 Copynumber: 3.1 Consensus size: 53
80775480 AGAGTTACCA
** *
80775490 TTTTACCTTCGATTTATAGAATTACTGTTTCACCCTCGATTTACAAAATTATCG
1 TTTTACCTTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTA-CG
*
80775544 TTTTA-CTATCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTG
1 TTTTACCT-TCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTAC-G
* * * * * *
80775598 TTTCACCCTCGATTTACAAAAATACCATTTTATCCTC-AGTTTACAAAATTACCG
1 TTTTACCTTCGATTTATAGAATTACCATTTTACCCTCGA-TTTACAAAATTA-CG
80775652 TTTTACC
1 TTTTACC
80775659 GTCAATTGTG
Statistics
Matches: 98, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
53 4 0.04
54 92 0.94
55 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (53 bp):
TTTTACCTTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACG
Found at i:80775629 original size:81 final size:81
Alignment explanation
Indices: 80775471--80775629 Score: 255
Period size: 81 Copynumber: 2.0 Consensus size: 81
80775461 TGAAATGCCC
* * * *
80775471 TCGATTTGTAGAGTTACCATTTTACCTTCGATTTATAGAATTACTGTTTCACCCTCGATTTACAA
1 TCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCCTCGATTTACAA
* * *
80775536 AATTATCGTTTTACTA
66 AAATACCATTTTACTA
80775552 TCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCCTCGATTTACAA
1 TCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCCTCGATTTACAA
80775617 AAATACCATTTTA
66 AAATACCATTTTA
80775630 TCCTCAGTTT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (81 bp):
TCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCCTCGATTTACAA
AAATACCATTTTACTA
Found at i:80775648 original size:81 final size:81
Alignment explanation
Indices: 80775484--80775658 Score: 237
Period size: 81 Copynumber: 2.2 Consensus size: 81
80775474 ATTTGTAGAG
* * * * *
80775484 TTACCATTTTACCTTCGATTTATAGAATTACTGTTTCACCCTCGATTTACAAAATTATCGTTTTA
1 TTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCCTCGATTTACAAAAATACCATTTTA
* *
80775549 CTATCGATTTATAGAA
66 CTATCGATTTACAAAA
80775565 TTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCCTCGATTTACAAAAATACCATTTTA
1 TTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCCTCGATTTACAAAAATACCATTTTA
*
80775630 -TCCTC-AGTTTACAAAA
66 CT-ATCGA-TTTACAAAA
*
80775646 TTACCGTTTTACC
1 TTACCATTTTACC
80775659 GTCAATTGTG
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
80 2 0.02
81 81 0.98
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (81 bp):
TTACCATTTTACCCTCGATTTACAGAATTACTGTTTCACCCTCGATTTACAAAAATACCATTTTA
CTATCGATTTACAAAA
Found at i:80775727 original size:27 final size:27
Alignment explanation
Indices: 80775697--80775847 Score: 171
Period size: 27 Copynumber: 5.6 Consensus size: 27
80775687 TGTAGGATAG
80775697 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
80775724 AATTACCAAAATACCCCTAGCTTGAAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
80775751 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
80775778 AATTACCAAAATA-CCCTCAATTTATAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
* **
80775805 AATTACCAAAATACCCCTGGTTTACAA
1 AATTACCAAAATACCCCTAGTTTGTAA
80775832 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
80775848 TTGACTTTCT
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 5 0.05
27 95 0.91
28 4 0.04
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.26
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:80775736 original size:54 final size:54
Alignment explanation
Indices: 80775664--80775850 Score: 175
Period size: 54 Copynumber: 3.5 Consensus size: 54
80775654 TTACCGTCAA
* ** * * *
80775664 TTGTGAAATTACTGAAATACCCTTGTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCTTGTATGATAAAATTACCAAAATACCCCTGGT
* * *
80775718 TTGTAAAATTACCAAAATACCCCTAGCT-TGA-AAAATTACCGAAATACCACTGGT
1 TTGTAAAATTACCAAAATA-CCCTTG-TATGATAAAATTACCAAAATACCCCTGGT
* ** *
80775772 TTGTGAAATTACCAAAATACCC-TCAATTTATAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCTTGTA-TGATAAAATTACCAAAATACCCCTGGT
**
80775826 TTACAAAATTA-CAGAAATACCCTTG
1 TTGTAAAATTACCA-AAATACCCTTG
80775851 ACTTTCTAAA
Statistics
Matches: 106, Mismatches: 20, Indels: 13
0.76 0.14 0.09
Matches are distributed among these distances:
53 7 0.07
54 90 0.85
55 8 0.08
56 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCTTGTATGATAAAATTACCAAAATACCCCTGGT
Found at i:80775782 original size:81 final size:81
Alignment explanation
Indices: 80775697--80775846 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 81
80775687 TGTAGGATAG
* * *
80775697 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAGCTTGA-AAAATTACCGA
1 AATTACCAAAATACCCTC-AATTTATAAAATTACCAAAATACCCCT-GCTTGACAAAATTACAGA
80775760 AATACCACTGGTTTGTGA
64 AATACCACTGGTTTGTGA
* *
80775778 AATTACCAAAATACCCTCAATTTATAAAATTACCAAAATACCCCTGGTTTACAAAATTACAGAAA
1 AATTACCAAAATACCCTCAATTTATAAAATTACCAAAATACCCCTGCTTGACAAAATTACAGAAA
80775843 TACC
66 TACC
80775847 CTTGACTTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
80 4 0.06
81 57 0.92
82 1 0.02
ACGTcount: A:0.43, C:0.23, G:0.08, T:0.27
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTATAAAATTACCAAAATACCCCTGCTTGACAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:80775898 original size:27 final size:27
Alignment explanation
Indices: 80775749--80775910 Score: 114
Period size: 27 Copynumber: 5.9 Consensus size: 27
80775739 CCTAGCTTGA
* **
80775749 AAAATTACCGAAATACCAC-TGGTTTGT
1 AAAATTACTGAAATACC-CTTGGTTTAC
* ** *** *
80775776 GAAATTACCAAAATACCCTCAATTTAT
1 AAAATTACTGAAATACCCTTGGTTTAC
** *
80775803 AAAATTACCAAAATACCCCTGGTTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
80775830 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACTGAAATACCCTTG-GTTTAC
*
80775857 TAAAAATTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
80775886 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
80775911 GTAGATTTAC
Statistics
Matches: 108, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 81 0.75
28 7 0.06
29 19 0.18
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:80776028 original size:27 final size:27
Alignment explanation
Indices: 80775965--80776028 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
80775955 CCCCTAATAA
* *
80775965 GTAAAAAGACCGTAAAGCCCCTGTAGG
1 GTAAAATGACCGTAAAGCCCCTGTACG
* *
80775992 GTAAAGTGACCGTAATA-CCCTTGTACG
1 GTAAAATGACCGTAA-AGCCCCTGTACG
80776019 GTAAAATGAC
1 GTAAAATGAC
80776029 GAATATGCCC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
GTAAAATGACCGTAAAGCCCCTGTACG
Found at i:80776858 original size:26 final size:26
Alignment explanation
Indices: 80776829--80776977 Score: 212
Period size: 26 Copynumber: 5.8 Consensus size: 26
80776819 GAGGAAGTGC
*
80776829 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
80776855 AAAAGGGCTGATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
80776881 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
80776907 AAATGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
80776933 AAAAGGGCTT-TGCCCCAGTTTTTCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
80776958 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
80776978 ATTAAAGAGG
Statistics
Matches: 109, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
25 33 0.30
26 76 0.70
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:80777181 original size:42 final size:42
Alignment explanation
Indices: 80777122--80777213 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
80777112 TAGTCTCCCC
* ** *
80777122 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
80777164 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
80777206 AAATGGGC
1 AAATGGGC
80777214 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:80777272 original size:31 final size:31
Alignment explanation
Indices: 80777237--80777311 Score: 114
Period size: 31 Copynumber: 2.4 Consensus size: 31
80777227 CGTTTACAGT
80777237 AAAGGCTTCGGCCCAATGATATGACTTAGGA
1 AAAGGCTTCGGCCCAATGATATGACTTAGGA
* * * *
80777268 AAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGACTTAGGA
80777299 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
80777312 TAGTAACCGT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGACTTAGGA
Found at i:80778300 original size:24 final size:24
Alignment explanation
Indices: 80778259--80778373 Score: 98
Period size: 23 Copynumber: 4.9 Consensus size: 24
80778249 AAGCTCCTCC
*
80778259 TGAGCTGACAAACAGTAAGCTCTAT
1 TGAGCTG-GAAACAGTAAGCTCTAT
*
80778284 TGAGCTGGAAACGGTAAGCTCTAT
1 TGAGCTGGAAACAGTAAGCTCTAT
80778308 TGAGCT-G-AACAGTAAGCTCT-T
1 TGAGCTGGAAACAGTAAGCTCTAT
* * * *
80778329 TCAAGCT-GAATC-GATAAGCTCAAA
1 T-GAGCTGGAAACAG-TAAGCTCTAT
*
80778353 TGTGCT-GAAACAGTAAGCTCT
1 TGAGCTGGAAACAGTAAGCTCT
80778374 TACAAGCTGT
Statistics
Matches: 74, Mismatches: 11, Indels: 12
0.76 0.11 0.12
Matches are distributed among these distances:
21 2 0.03
22 18 0.24
23 24 0.32
24 23 0.31
25 7 0.09
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (24 bp):
TGAGCTGGAAACAGTAAGCTCTAT
Found at i:80778324 original size:46 final size:46
Alignment explanation
Indices: 80778259--80778382 Score: 135
Period size: 46 Copynumber: 2.7 Consensus size: 46
80778249 AAGCTCCTCC
* * * *
80778259 TGAGCTGACAAACAGTAAGCTCTATT-GAGCTGGAAACGGTAAGCTCTAT
1 TGAGCTG--AAACAGTAAGCTCT-TTCAAGCT-GAAACGATAAGCTCAAA
*
80778308 TGAGCTG-AACAGTAAGCTCTTTCAAGCTGAATCGATAAGCTCAAA
1 TGAGCTGAAACAGTAAGCTCTTTCAAGCTGAAACGATAAGCTCAAA
* *
80778353 TGTGCTGAAACAGTAAGCTCTTACAAGCTG
1 TGAGCTGAAACAGTAAGCTCTTTCAAGCTG
80778383 TGGTGAGTCC
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
45 21 0.32
46 38 0.58
49 7 0.11
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (46 bp):
TGAGCTGAAACAGTAAGCTCTTTCAAGCTGAAACGATAAGCTCAAA
Found at i:80778382 original size:23 final size:23
Alignment explanation
Indices: 80778310--80778382 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 23
80778300 AGCTCTATTG
*
80778310 AGCTG-AACAGTAAGCTCTTTCA
1 AGCTGAAACAGTAAGCTCTTACA
* ** **
80778332 AGCTGAATC-GATAAGCTCAAATG
1 AGCTGAAACAG-TAAGCTCTTACA
*
80778355 TGCTGAAACAGTAAGCTCTTACA
1 AGCTGAAACAGTAAGCTCTTACA
80778378 AGCTG
1 AGCTG
80778383 TGGTGAGTCC
Statistics
Matches: 35, Mismatches: 13, Indels: 5
0.66 0.25 0.09
Matches are distributed among these distances:
22 6 0.17
23 28 0.80
24 1 0.03
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (23 bp):
AGCTGAAACAGTAAGCTCTTACA
Found at i:80782655 original size:16 final size:15
Alignment explanation
Indices: 80782631--80782660 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
80782621 AACTGTTTTA
80782631 TTACAAATTTCACTC
1 TTACAAATTTCACTC
80782646 TTACATAATTTCACT
1 TTACA-AATTTCACT
80782661 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:80782925 original size:50 final size:50
Alignment explanation
Indices: 80782857--80783103 Score: 260
Period size: 50 Copynumber: 4.9 Consensus size: 50
80782847 GTAACCAAAG
* *
80782857 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
1 CTATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * * * * *
80782907 CCATCTGATACACGTAGTAGCATGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * * * *
80782957 GTTGTCGGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA
1 -CTATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
* * * * **
80783008 CTATCTGGTACACGTAGTAGCATGCACTTAGTAGTACACACATGACCTACAA
1 CTATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AA
* * * *
80783060 CTATCTTAAACACATAGTAACCTGCACATAGTACTACACATGTG
1 CTATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTG
80783104 TTCTCACAAT
Statistics
Matches: 156, Mismatches: 38, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
50 81 0.52
51 39 0.25
52 36 0.23
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
CTATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
Found at i:80783005 original size:101 final size:101
Alignment explanation
Indices: 80782863--80783048 Score: 327
Period size: 101 Copynumber: 1.8 Consensus size: 101
80782853 AAAGCTATCT
* *
80782863 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGATACACGTAGTAGC
80782928 ATGCACTTAGTACTACACACGTGATCGAAGTTGTCG
66 ATGCACTTAGTACTACACACGTGATCGAAGTTGTCG
* *
80782964 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGATACACGTAGTAGC
*
80783029 ATGCACTTAGTAGTACACAC
66 ATGCACTTAGTACTACACAC
80783049 ATGACCTACA
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 80 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (101 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGATACACGTAGTAGC
ATGCACTTAGTACTACACACGTGATCGAAGTTGTCG
Found at i:80783968 original size:87 final size:87
Alignment explanation
Indices: 80783822--80783994 Score: 346
Period size: 87 Copynumber: 2.0 Consensus size: 87
80783812 CGAGGATTTT
80783822 AAAAACGTAAAAATCATTAAAAACGGGGCTAGAACGGACTTACAATCGAGCTTGGAAGCTTGAAA
1 AAAAACGTAAAAATCATTAAAAACGGGGCTAGAACGGACTTACAATCGAGCTTGGAAGCTTGAAA
80783887 AACCCTAGCTATGTCTTCTCCC
66 AACCCTAGCTATGTCTTCTCCC
80783909 AAAAACGTAAAAATCATTAAAAACGGGGCTAGAACGGACTTACAATCGAGCTTGGAAGCTTGAAA
1 AAAAACGTAAAAATCATTAAAAACGGGGCTAGAACGGACTTACAATCGAGCTTGGAAGCTTGAAA
80783974 AACCCTAGCTATGTCTTCTCC
66 AACCCTAGCTATGTCTTCTCC
80783995 ATACTAGTTT
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.22
Consensus pattern (87 bp):
AAAAACGTAAAAATCATTAAAAACGGGGCTAGAACGGACTTACAATCGAGCTTGGAAGCTTGAAA
AACCCTAGCTATGTCTTCTCCC
Found at i:80789270 original size:19 final size:19
Alignment explanation
Indices: 80789242--80789280 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
80789232 TGATCTATGG
*
80789242 ATACATATGTA-ATAATAAT
1 ATACACATGTATA-AATAAT
80789261 ATACACATGTATAAATAAT
1 ATACACATGTATAAATAAT
80789280 A
1 A
80789281 AATAAGTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.33
Consensus pattern (19 bp):
ATACACATGTATAAATAAT
Found at i:80792062 original size:79 final size:78
Alignment explanation
Indices: 80791960--80792182 Score: 256
Period size: 79 Copynumber: 2.8 Consensus size: 78
80791950 GCTTCTCGTT
* *
80791960 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
80792025 ATTTAGTAACCCGCA
64 AATTAGTAACCCGCA
*
80792040 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
* *
80792103 AATTAGTATCTCGCA
64 AATTAGTAACCCGCA
* * * * *
80792118 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
80792181 GA
63 GA
80792183 CATCATTCAA
Statistics
Matches: 124, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
78 46 0.37
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACCCGCA
Found at i:80792079 original size:39 final size:40
Alignment explanation
Indices: 80791960--80792182 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
80791950 GCTTCTCGTT
* *
80791960 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
80792000 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
80792040 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
80792079 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
80792118 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
80792159 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80792183 CATCATTCAA
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 2 0.01
39 88 0.54
40 63 0.38
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:80797134 original size:56 final size:55
Alignment explanation
Indices: 80797064--80797284 Score: 232
Period size: 56 Copynumber: 3.9 Consensus size: 55
80797054 CATACATGTT
* * *
80797064 ATCACATATCGATGCCAC-TATCCCAGACAG-GGTCTTACTCTCATACATATATC-GAA
1 ATCACATATCGATGCCACGTAT--CAAAC-GTGGTCTTACTCGCACACATATATCAG-A
*
80797120 ATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCAGA
1 ATCACATATCGATGCC-ACGTATCAAACGTGGTCTTACTCGCACACATATATCAGA
* * * *
80797176 ATCACATATCGATGCCAATGTATTAAATGTGGTCTTACTCACACACATATATCAGA
1 ATCACATATCGATGCC-ACGTATCAAACGTGGTCTTACTCGCACACATATATCAGA
* * * * * *
80797232 ATCACATATAGATGCCAACATATTAAACGTGGCCTTACTTGCACATATATATC
1 ATCACATATCGATGCC-ACGTATCAAACGTGGTCTTACTCGCACACATATATC
80797285 GATGCCACGG
Statistics
Matches: 146, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
55 1 0.01
56 139 0.95
57 3 0.02
58 3 0.02
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (55 bp):
ATCACATATCGATGCCACGTATCAAACGTGGTCTTACTCGCACACATATATCAGA
Found at i:80799399 original size:40 final size:40
Alignment explanation
Indices: 80799341--80799508 Score: 214
Period size: 40 Copynumber: 4.2 Consensus size: 40
80799331 TCTTAGGGAT
* *
80799341 TTAG-CCGGATATAACAACTCGCACAAATGCTTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
80799380 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* * * * *
80799420 TTAGCCCGGATATAATC-ACTAGCATAAATGCTTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTC
* * *
80799460 ATAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
80799500 TTAGTCCGG
1 TTAGCCCGG
80799509 TTATCATCCG
Statistics
Matches: 109, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 6 0.06
40 101 0.93
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:80799478 original size:80 final size:79
Alignment explanation
Indices: 80799337--80799508 Score: 249
Period size: 80 Copynumber: 2.2 Consensus size: 79
80799327 AGTATCTTAG
* * *
80799337 GGAT-TTAGCCGGATATAACAACTCGCACAAATGCTTTCGGGTCTTAGCCCGGATATAGCAACTC
1 GGATCTTAGCCGGATATAACAACTAGCACAAATGCTTTCGGGACATAGCCCGGATATAGCAACTC
80799401 GCACAAATGCCTTC
66 GCACAAATGCCTTC
* *
80799415 GGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCTTTCGGGACATAGCCCGGATATAGCAAC
1 GGATCTTAG-CCGGATATAA-CAACTAGCACAAATGCTTTCGGGACATAGCCCGGATATAGCAAC
*
80799479 TCGCACGAATGCCTTC
64 TCGCACAAATGCCTTC
80799495 GGATCTTAGTCCGG
1 GGATCTTAG-CCGG
80799509 TTATCATCCG
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
78 3 0.04
79 4 0.05
80 75 0.90
81 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (79 bp):
GGATCTTAGCCGGATATAACAACTAGCACAAATGCTTTCGGGACATAGCCCGGATATAGCAACTC
GCACAAATGCCTTC
Found at i:80806457 original size:40 final size:40
Alignment explanation
Indices: 80806390--80806566 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
80806380 ACCCAAGTAT
*
80806390 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
80806429 TTTCGGGTCTTAGCCCGGATATAGCAACTCGGACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
80806469 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * * *
80806509 TTTCGGGACATAGCTCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
80806549 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
80806567 TTATCATCCG
Statistics
Matches: 112, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.11
40 97 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:80806528 original size:80 final size:79
Alignment explanation
Indices: 80806390--80806566 Score: 232
Period size: 80 Copynumber: 2.2 Consensus size: 79
80806380 ACCCAAGTAT
* * *
80806390 CTTCGGGAT-TTAGCCGGATATAACAACTCGCACAAATGCTTTCGGGTCTTAGCCCGGATATAGC
1 CTTCGGG-TCTTAGCCGGATATAACAACTAGCACAAATGCTTTCGGGACATAGCCCGGATATAGC
*
80806454 AACTCGGACAAATGC
65 AACTCGCACAAATGC
* *
80806469 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCTTTCGGGACATAGCTCGGATATAG
1 CTTCGGGTCTTAG-CCGGATATAA-CAACTAGCACAAATGCTTTCGGGACATAGCCCGGATATAG
*
80806533 CAACTCGCACGAATGC
64 CAACTCGCACAAATGC
*
80806549 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAG-CCGG
80806567 TTATCATCCG
Statistics
Matches: 86, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 11 0.13
80 73 0.85
81 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (79 bp):
CTTCGGGTCTTAGCCGGATATAACAACTAGCACAAATGCTTTCGGGACATAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:80812560 original size:27 final size:26
Alignment explanation
Indices: 80812513--80812563 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
80812503 CGAGGCTGCC
*
80812513 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
80812539 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
80812564 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:80813192 original size:26 final size:27
Alignment explanation
Indices: 80813163--80813213 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
80813153 CACAAGTTAG
*
80813163 TCATTT-ACGCACAAGGGGCAAAATAA
1 TCATTTAACACACAAGGGGCAAAATAA
* *
80813189 TCATTTAACACCCTAGGGGCAAAAT
1 TCATTTAACACACAAGGGGCAAAAT
80813214 GGTAATTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.22
Consensus pattern (27 bp):
TCATTTAACACACAAGGGGCAAAATAA
Found at i:80813244 original size:27 final size:27
Alignment explanation
Indices: 80813214--80813439 Score: 269
Period size: 27 Copynumber: 8.4 Consensus size: 27
80813204 GGGGCAAAAT
* * *
80813214 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
**
80813241 GGTAATTCTACCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
80813268 GATATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
80813295 GGTAATTCTATCCTA-AAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
80813321 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
**
80813348 AATAATTCTACCCTAC-AGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
* *
80813375 GGTAATTCTACCTTA-AAGGGGTATTTT
1 GGTAATTCTACCCTACAA-GGGTATTTC
* *
80813402 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
80813429 GGTAATTCTAC
1 GGTAATTCTAC
80813440 AACTTATCCA
Statistics
Matches: 169, Mismatches: 25, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
26 25 0.15
27 142 0.84
28 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:80813363 original size:80 final size:80
Alignment explanation
Indices: 80813230--80813439 Score: 307
Period size: 80 Copynumber: 2.6 Consensus size: 80
80813220 TTTACCCCAC
* * *
80813230 AAGGGTATCTCGGTAATTCTACCCTACGGGGGTATTTCGATATTTCTACCCTACA-AGGGTATTT
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGA-GGTATTT
*
80813294 TGGTAATTCTATCC-TA
65 CGGTAATTCTA-CCTTA
*
80813310 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGAGGTATTTC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGAGGTATTTC
80813375 GGTAATTCTACCTTA
66 GGTAATTCTACCTTA
* * *
80813390 AAGGGGTATTTTGGTAATTCTACCTTACAGGGGTATTTCGGTAATTCTAC
1 AA-GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTAC
80813440 AACTTATCCA
Statistics
Matches: 118, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
79 2 0.02
80 72 0.61
81 44 0.37
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (80 bp):
AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGAGGTATTTC
GGTAATTCTACCTTA
Found at i:80825258 original size:55 final size:53
Alignment explanation
Indices: 80825052--80825260 Score: 206
Period size: 55 Copynumber: 3.9 Consensus size: 53
80825042 TATCCTTTTG
* * * * *
80825052 AAACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAT
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTCCTTAA
* * *** * *
80825105 GAACTCACCAATGTTGTGCCTTGGCATGGTCTTACATGGGAAT--TTTACCTTATA
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACAT-GGTATCCTTT-CCTTA-A
* * *
80825159 GTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTTCCTTAA
1 -AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTCCTTAA
*
80825213 AAACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AAA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
80825261 AAACCCTAAT
Statistics
Matches: 123, Mismatches: 25, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
52 2 0.02
53 35 0.28
54 16 0.13
55 67 0.54
56 3 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTCCTTAA
Found at i:80831060 original size:55 final size:53
Alignment explanation
Indices: 80830823--80831074 Score: 192
Period size: 55 Copynumber: 4.8 Consensus size: 53
80830813 ACACGGGTAC
* * * * *
80830823 CTTACCATTGCTATGACTTGTCATGGTCTTACGTGGTATCCTT--C-T-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* * * * * * *
80830872 CTTACCATTTCTATGTCTCGACATGGTTTTACATGGTATCATTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * * * *
80830925 CTCAACAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTACCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAA
* *
80830980 CTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
** * *
80831033 CCTTACCAATTTTCATGCCTTGGCATGGTGTTACATGGTATC
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATC
80831075 TTTAAACCTT
Statistics
Matches: 159, Mismatches: 32, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
49 36 0.23
51 1 0.01
52 2 0.01
53 39 0.25
54 11 0.07
55 68 0.43
56 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:80831447 original size:30 final size:30
Alignment explanation
Indices: 80831413--80831471 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
80831403 TCCTTGACTC
*
80831413 AAACTTTGGCAAAATTACACTTTTGCCCCT
1 AAACTTTGACAAAATTACACTTTTGCCCCT
* * *
80831443 AAACTTTTACATATTTACACTTTTGCCCC
1 AAACTTTGACAAAATTACACTTTTGCCCC
80831472 AAGGCTTGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.07, T:0.37
Consensus pattern (30 bp):
AAACTTTGACAAAATTACACTTTTGCCCCT
Found at i:80832889 original size:45 final size:45
Alignment explanation
Indices: 80832833--80832920 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 45
80832823 AAAAATGTGT
* * *
80832833 CACATACATCATAAACTCAGACCATAACTCAATGAGTTTAGATGC
1 CACATACATCATAAACTCAGACCACAACCCAATGAGTTCAGATGC
* *
80832878 CACATATATCATGAACTCAGACCACAACCCAATGAGTTCAGAT
1 CACATACATCATAAACTCAGACCACAACCCAATGAGTTCAGAT
80832921 CACATAGTTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.40, C:0.26, G:0.11, T:0.23
Consensus pattern (45 bp):
CACATACATCATAAACTCAGACCACAACCCAATGAGTTCAGATGC
Found at i:80835064 original size:29 final size:29
Alignment explanation
Indices: 80835030--80835103 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
80835020 TCATCAACCA
*
80835030 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
* **
80835059 CGCACACTCAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
80835088 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
80835104 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:80855160 original size:3 final size:3
Alignment explanation
Indices: 80855152--80855188 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
80855142 TGCCTATGGC
80855152 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
80855189 AGGAAAGGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:80856838 original size:12 final size:12
Alignment explanation
Indices: 80856821--80856845 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80856811 TACCTATATG
80856821 GTAGAATTTTTT
1 GTAGAATTTTTT
80856833 GTAGAATTTTTT
1 GTAGAATTTTTT
80856845 G
1 G
80856846 GTTGGGCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.56
Consensus pattern (12 bp):
GTAGAATTTTTT
Found at i:80858232 original size:29 final size:29
Alignment explanation
Indices: 80858197--80858270 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
80858187 TCATCAACCA
*
80858197 CGCACACTTAGTGCCATGTACTTTAAACTT
1 CGCACACTTAGTGCCATGCA-TTTAAACTT
* * *
80858227 -GCACACTCAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTAAACTT
*
80858255 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
80858271 ATCTCACAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
28 7 0.19
29 30 0.81
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTAAACTT
Found at i:80866254 original size:29 final size:29
Alignment explanation
Indices: 80866219--80866292 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
80866209 TCATCAACCA
*
80866219 CGCACACTTAGTGCCATGTACTTTAAACTT
1 CGCACACTTAGTGCCATGCA-TTTAAACTT
* * *
80866249 -GCACACTCAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTAAACTT
*
80866277 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
80866293 ATCTCACAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
28 7 0.19
29 30 0.81
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTAAACTT
Found at i:80869156 original size:14 final size:14
Alignment explanation
Indices: 80869137--80869165 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
80869127 TTCCAAGGAG
80869137 ATACTTTCAAAAAT
1 ATACTTTCAAAAAT
80869151 ATACTTTCAAAAAT
1 ATACTTTCAAAAAT
80869165 A
1 A
80869166 CCATATCATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (14 bp):
ATACTTTCAAAAAT
Found at i:80875470 original size:48 final size:46
Alignment explanation
Indices: 80875311--80875474 Score: 141
Period size: 46 Copynumber: 3.5 Consensus size: 46
80875301 TATGTGTGCT
* * * * ** *
80875311 AGTGTAAGACATGTTTGGGAAATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAAGA-GAAAGCC
* * * * * *
80875357 AGTGTAAGACATGTCTAGGACATGCATCGGCTTTGAAGCGAAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAAGAGAAAGCC
* * *
80875403 AGTGTAAGACATGTTTGGGACATGCATCAGCCTCGAGATATACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA-AGAGA-AAGCC
*
80875451 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
80875475 GCGTCAGCTT
Statistics
Matches: 93, Mismatches: 22, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
46 64 0.69
47 3 0.03
48 26 0.28
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAAGAGAAAGCC
Found at i:80875554 original size:49 final size:48
Alignment explanation
Indices: 80875497--80875666 Score: 155
Period size: 49 Copynumber: 3.5 Consensus size: 48
80875487 TGTGTGTCAG
*
80875497 TGTAAGACCTGTCTAGGACATGGCATCGACACTGATAGATGAGAGCCAA
1 TGTAAGACCTGTCTAGGACATGGCATCGAC-CTGATAGATGAAAGCCAA
* * * * ** *
80875546 TGTAAGACCTATCTAGGACATAGCATTGACCTCGATATATGAAATTCAT
1 TGTAAGACCTGTCTAGGACATGGCATCGACCT-GATAGATGAAAGCCAA
* * * ** *
80875595 TGTAAGACCTGTCTGGGACATGGCATCAACTTTGAT-G-TGCTAGCCAG
1 TGTAAGACCTGTCTAGGACATGGCATCGAC-CTGATAGATGAAAGCCAA
*
80875642 TGTAAGACCATGTCTGGGACATGGC
1 TGTAAGACC-TGTCTAGGACATGGC
80875667 GTCAGCTTCT
Statistics
Matches: 98, Mismatches: 20, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
47 14 0.14
48 17 0.17
49 66 0.67
50 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (48 bp):
TGTAAGACCTGTCTAGGACATGGCATCGACCTGATAGATGAAAGCCAA
Found at i:80878755 original size:27 final size:26
Alignment explanation
Indices: 80878707--80878766 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
80878697 GCGAGACTAC
*
80878707 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
80878734 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
80878760 CATATAT
1 CAGATAT
80878767 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:80878853 original size:27 final size:26
Alignment explanation
Indices: 80878805--80878856 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
80878795 GTGAGGCTGC
*
80878805 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
80878831 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
80878857 TTGCAGCTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:80882382 original size:48 final size:47
Alignment explanation
Indices: 80882224--80882438 Score: 181
Period size: 46 Copynumber: 4.6 Consensus size: 47
80882214 TGATATGTGT
* * * * *
80882224 GCTAGTGTAAAACATGTCTGGCACATGCATC-GGCT--AAATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGA-TAT-AAA
* * * * * *
80882270 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTTTGAGACA-AGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATAAA
*
80882316 GCTAGTGTAAGAGATGTCTGGGACATGCATCAGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATA-AA
*
80882364 GCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGA-ATATTAAA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGAGATA-TAAA
* * * *
80882412 G-TCATTGTAATACCTGTTTGGGACATG
1 GCT-AGTGTAAGACATGTCTGGGACATG
80882439 GAATCGACTT
Statistics
Matches: 142, Mismatches: 19, Indels: 15
0.81 0.11 0.09
Matches are distributed among these distances:
46 68 0.48
47 5 0.04
48 52 0.37
49 17 0.12
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATAAA
Found at i:80882439 original size:48 final size:49
Alignment explanation
Indices: 80882273--80882439 Score: 168
Period size: 48 Copynumber: 3.5 Consensus size: 49
80882263 TATGAGAGCC
* * * * * *
80882273 AGTGTAAGACATGTCTGGGACAT-GCATCGGCTTTGAGACA-A-GAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGAGATATACAAGCT
**
80882319 AGTGTAAGAGATGTCTGGGACAT-GCATCAGCCTCGAGATATACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGAGATATACAAGCT
80882367 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGA-ATATTA-AAG-T
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGAGATA-TACAAGCT
* * *
80882414 CATTGTAATACCTGTTTGGGACATGG
1 -AGTGTAAGACCTGTCTGGGACATGG
80882440 AATCGACTTT
Statistics
Matches: 105, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
46 35 0.33
47 2 0.02
48 53 0.50
49 15 0.14
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.26
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGAGATATACAAGCT
Found at i:80885202 original size:45 final size:45
Alignment explanation
Indices: 80885138--80885225 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
80885128 AAACATGTGT
* *
80885138 CACATACATCATGAACTCAGACCATAACTCAATGAGTTCAGATGC
1 CACATACATAATGAACTCAGACCACAACTCAATGAGTTCAGATGC
*
80885183 CACATATATAATGAACTCAGACCACAACTCAATGAGTTCAGAT
1 CACATACATAATGAACTCAGACCACAACTCAATGAGTTCAGAT
80885226 CACATAGTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.40, C:0.25, G:0.12, T:0.23
Consensus pattern (45 bp):
CACATACATAATGAACTCAGACCACAACTCAATGAGTTCAGATGC
Found at i:80885223 original size:21 final size:21
Alignment explanation
Indices: 80885154--80885229 Score: 64
Period size: 21 Copynumber: 3.5 Consensus size: 21
80885144 CATCATGAAC
*
80885154 TCAGACCATAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* **
80885175 TCAGATGCCACATA-TATAATGAAC
1 TCAGA--CCACA-ACT-CAATGAGT
80885199 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
*
80885220 TCAGATCACA
1 TCAGACCACA
80885230 TAGTTCCTAG
Statistics
Matches: 42, Mismatches: 8, Indels: 10
0.70 0.13 0.17
Matches are distributed among these distances:
21 20 0.48
22 6 0.14
23 5 0.12
24 11 0.26
ACGTcount: A:0.39, C:0.25, G:0.13, T:0.22
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:80889302 original size:29 final size:29
Alignment explanation
Indices: 80889260--80889319 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
80889250 TGTTTTTTGC
80889260 TACTCATAAGCTATAAAAGTAACATATTT
1 TACTCATAAGCTATAAAAGTAACATATTT
*
80889289 TACTCATAAGCTATAACAGTAACATATTT
1 TACTCATAAGCTATAAAAGTAACATATTT
80889318 TA
1 TA
80889320 ATCACATTCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.43, C:0.15, G:0.07, T:0.35
Consensus pattern (29 bp):
TACTCATAAGCTATAAAAGTAACATATTT
Found at i:80889707 original size:26 final size:26
Alignment explanation
Indices: 80889677--80889727 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
80889667 AAAACACTCA
80889677 AAGAAGACTATTGATTCCAACTCGGG
1 AAGAAGACTATTGATTCCAACTCGGG
80889703 AAGAAGACTATTGATTCCAACTCGG
1 AAGAAGACTATTGATTCCAACTCGG
80889728 AAGTGGATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.24
Consensus pattern (26 bp):
AAGAAGACTATTGATTCCAACTCGGG
Found at i:80894619 original size:43 final size:41
Alignment explanation
Indices: 80894510--80894674 Score: 120
Period size: 43 Copynumber: 3.9 Consensus size: 41
80894500 AAGCTCACAT
* * *
80894510 AATGCC-ATATCCCAAATATGGTCTTACAT-ACTATCACATATC
1 AATGCCAATGTCCCAAACATGGTCTTACATGA-AATCA-ATA-C
* * * *
80894552 GATGCCACTATCCCAAACAGGGTCTTACATGAAATCAATTA-
1 AATGCCAATGTCCCAAACATGGTCTTACATGAAATCAA-TAC
* * * *
80894593 ATGATGCCAATGTCCTAGACATGGTCTTACACGTAATCTCAATAC
1 A--ATGCCAATGTCCCAAACATGGTCTTACATG-AA-ATCAATAC
* *
80894638 AATGCCAATGTCCCAAATATGGTCTTACATGTAATCA
1 AATGCCAATGTCCCAAACATGGTCTTACATGAAATCA
80894675 CATCTCGATA
Statistics
Matches: 96, Mismatches: 19, Indels: 17
0.73 0.14 0.13
Matches are distributed among these distances:
41 3 0.03
42 7 0.07
43 76 0.79
44 5 0.05
45 5 0.05
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (41 bp):
AATGCCAATGTCCCAAACATGGTCTTACATGAAATCAATAC
Found at i:80895056 original size:19 final size:19
Alignment explanation
Indices: 80895032--80895070 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
80895022 GCACTTCTTC
*
80895032 CCTTAAAGTTACATGTTTA
1 CCTTAAAGTTACACGTTTA
80895051 CCTTAAAGTTACACGTTTA
1 CCTTAAAGTTACACGTTTA
80895070 C
1 C
80895071 TCAATTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (19 bp):
CCTTAAAGTTACACGTTTA
Found at i:80896213 original size:28 final size:28
Alignment explanation
Indices: 80896177--80896240 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
80896167 CTGGCACACA
*
80896177 CCCGTGTCCCTCACACGGCCATGACAAG
1 CCCGTGTCCCTCACACAGCCATGACAAG
*
80896205 CCCGTGTCCCTCACACAGCCATGACACG
1 CCCGTGTCCCTCACACAGCCATGACAAG
80896233 CCCGTGTC
1 CCCGTGTC
80896241 TCAGCCCTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.19, C:0.45, G:0.20, T:0.16
Consensus pattern (28 bp):
CCCGTGTCCCTCACACAGCCATGACAAG
Found at i:80897420 original size:47 final size:48
Alignment explanation
Indices: 80897350--80897472 Score: 158
Period size: 49 Copynumber: 2.5 Consensus size: 48
80897340 CGATGCTGAC
* * * *
80897350 GCCATGTTCCAAACATGGTCTTACATTGGCTCTCAC-ATCTAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTCTCACTATCTAAGTCAAT
**
80897398 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGTGTCAAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCAC-TATCTAAGTCAAT
*
80897447 GCCATGTCCCAGATAGGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
80897473 AACACAACTC
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
47 19 0.29
48 13 0.20
49 34 0.52
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (48 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTATCTAAGTCAAT
Found at i:80899791 original size:45 final size:45
Alignment explanation
Indices: 80899715--80899836 Score: 136
Period size: 45 Copynumber: 2.7 Consensus size: 45
80899705 CGATGCCACT
* * * * *
80899715 GTCCCAAACATAGTCTTACACATAACCACATAGATTGACGCAAAC
1 GTCCCAGACATGGTCTTACACAAAAACACATAGATCGACGCAAAC
* * * *
80899760 GTCTCAGACATGGTCTTACACAAAAACACATATATCGATGCCAAC
1 GTCCCAGACATGGTCTTACACAAAAACACATAGATCGACGCAAAC
* **
80899805 GTCCCAGACGTGGTCTTACATGAAAACACATA
1 GTCCCAGACATGGTCTTACACAAAAACACATA
80899837 TCAAAATCCT
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.21
Consensus pattern (45 bp):
GTCCCAGACATGGTCTTACACAAAAACACATAGATCGACGCAAAC
Found at i:80899837 original size:45 final size:45
Alignment explanation
Indices: 80899701--80899837 Score: 134
Period size: 45 Copynumber: 3.0 Consensus size: 45
80899691 ATGCTATCTC
* * * *
80899701 ATATCGATGCC-ACTGTCCCAAACATAGTCTTACA-CATAACCACAT
1 ATATCGATGCCAAC-GTCCCAGACATGGTCTTACATGA-AAACACAT
* * * * * **
80899746 AGATTGACGCAAACGTCTCAGACATGGTCTTACACAAAAACACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACATGAAAACACAT
*
80899791 ATATCGATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACATGAAAACACAT
80899836 AT
1 AT
80899838 CAAAATCCTG
Statistics
Matches: 73, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
45 70 0.96
46 3 0.04
ACGTcount: A:0.36, C:0.27, G:0.14, T:0.23
Consensus pattern (45 bp):
ATATCGATGCCAACGTCCCAGACATGGTCTTACATGAAAACACAT
Found at i:80900909 original size:14 final size:15
Alignment explanation
Indices: 80900892--80900920 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
80900882 TCACGAAAAT
80900892 TTCACACAT-ATAAA
1 TTCACACATAATAAA
80900906 TTCACACATAATAAA
1 TTCACACATAATAAA
80900921 CACATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:80901803 original size:52 final size:52
Alignment explanation
Indices: 80901746--80901849 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
80901736 CGAACTCAAG
*
80901746 AATGCAACATCTCAACATATCCACAAGTATGTGAATGATTCGCTCAGACTGA
1 AATGCAACATCTCAACATATCCACAAGTATCTGAATGATTCGCTCAGACTGA
*
80901798 AATGCAATATCTCAACATATCCACAAGTATCTGAATGATTCGCTCAGACTGA
1 AATGCAACATCTCAACATATCCACAAGTATCTGAATGATTCGCTCAGACTGA
80901850 CCATCTGTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (52 bp):
AATGCAACATCTCAACATATCCACAAGTATCTGAATGATTCGCTCAGACTGA
Found at i:80907857 original size:45 final size:45
Alignment explanation
Indices: 80907732--80907857 Score: 162
Period size: 45 Copynumber: 2.8 Consensus size: 45
80907722 ATACGATACT
* * *
80907732 AATGTCCCAGACATGGTCTTACACGTAACCACATAGATCGATGCC
1 AATGTCCCAGACATGGTCTTACACGAAAACACATATATCGATGCC
* ** * * *
80907777 AACGTCCCAGATGTGGTTTTACTCGAAAACACATATATCGATGTC
1 AATGTCCCAGACATGGTCTTACACGAAAACACATATATCGATGCC
*
80907822 AATGTCCCAAACATGGTCTTACACGAAAACACATAT
1 AATGTCCCAGACATGGTCTTACACGAAAACACATAT
80907858 CAAAATCCTG
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 66 1.00
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (45 bp):
AATGTCCCAGACATGGTCTTACACGAAAACACATATATCGATGCC
Found at i:80908971 original size:14 final size:14
Alignment explanation
Indices: 80908954--80908996 Score: 68
Period size: 14 Copynumber: 3.0 Consensus size: 14
80908944 TCACAAAAAC
80908954 TTCACACATATAAA
1 TTCACACATATAAA
*
80908968 TTCATACATATAAA
1 TTCACACATATAAA
80908982 TTCACACATAATAAA
1 TTCACACAT-ATAAA
80908997 CACAAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 21 0.81
15 5 0.19
ACGTcount: A:0.51, C:0.19, G:0.00, T:0.30
Consensus pattern (14 bp):
TTCACACATATAAA
Found at i:80924002 original size:44 final size:44
Alignment explanation
Indices: 80923926--80924012 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
80923916 GGATATCACA
* *
80923926 ATTACAATAACCTACACTAATAAGAATCTAAGTGGGAAACTAAT
1 ATTAAAATAACCTACACTAATAAGAATCTAAGTGAGAAACTAAT
* * *
80923970 ATTAAAATAACCTACACTAATTAA-AGTTTAAGTGATAAACTAA
1 ATTAAAATAACCTACACTAA-TAAGAATCTAAGTGAGAAACTAA
80924013 AAACAGAGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
44 34 0.92
45 3 0.08
ACGTcount: A:0.49, C:0.14, G:0.09, T:0.28
Consensus pattern (44 bp):
ATTAAAATAACCTACACTAATAAGAATCTAAGTGAGAAACTAAT
Found at i:80927230 original size:40 final size:39
Alignment explanation
Indices: 80927172--80927250 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 39
80927162 ACTTAATTCA
* * *
80927172 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCT-AACCCGGATACAATC
*
80927212 CCAGCATGAAGCCAGCGGGTCTCTAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAACCCGGATACAATC
80927251 TTAGCACAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
39 15 0.43
40 20 0.57
ACGTcount: A:0.29, C:0.32, G:0.22, T:0.18
Consensus pattern (39 bp):
CCAGCATGAAGCCAGCGGGACTCTAACCCGGATACAATC
Found at i:80927425 original size:47 final size:46
Alignment explanation
Indices: 80927327--80927482 Score: 208
Period size: 47 Copynumber: 3.3 Consensus size: 46
80927317 TGCACACTTT
* *
80927327 TCACAATTGGTCATTCGGCCTTATCACA-TATTCACTTTCACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATTATACACTTTCACAT-TCA
** *
80927373 TCACATTAACCATTCGGCCTTATCACATGTATGCACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACAT-TATACACTTTCACATTCA
*
80927420 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACAT-TATACACTTTCACATTCA
80927467 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
80927483 ATCTTAAGCT
Statistics
Matches: 98, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
45 20 0.20
46 5 0.05
47 73 0.74
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCACATTATACACTTTCACATTCA
Found at i:80934934 original size:16 final size:15
Alignment explanation
Indices: 80934898--80934935 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 15
80934888 ACAAATGCCG
80934898 GCTTTTTGGCTTTTC
1 GCTTTTTGGCTTTTC
80934913 GACTTTTTGGCTTTTC
1 G-CTTTTTGGCTTTTC
80934929 AGCTTTT
1 -GCTTTT
80934936 ACCGATCTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.05
16 19 0.90
17 1 0.05
ACGTcount: A:0.05, C:0.18, G:0.18, T:0.58
Consensus pattern (15 bp):
GCTTTTTGGCTTTTC
Found at i:80938268 original size:27 final size:26
Alignment explanation
Indices: 80938237--80938414 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
80938227 TAAATTGTAC
80938237 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
80938264 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
80938290 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
80938318 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
80938346 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
80938373 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
80938400 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80938415 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:80938353 original size:82 final size:81
Alignment explanation
Indices: 80938238--80938393 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
80938228 AAATTGTACA
* * *
80938238 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
80938302 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
80938319 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
80938384 TGCGAGTTGA
65 TGCGAATTGA
80938394 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:80938405 original size:82 final size:81
Alignment explanation
Indices: 80938234--80938414 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
80938224 GATTAAATTG
* * *
80938234 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
80938299 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
80938315 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
80938379 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
80938397 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
80938415 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:80943527 original size:41 final size:41
Alignment explanation
Indices: 80943446--80943671 Score: 210
Period size: 41 Copynumber: 5.5 Consensus size: 41
80943436 AATTATCCCA
* *
80943446 TGAATTGCACATACGTGCCCCTGA--TATACTTCGGTACCCC
1 TGAATTGCACATACGTGCCCCT-ATTTGTACTTCGATACCCC
* *
80943486 TGAATTGCACATACGTGCCTCTATTTATACTTCGATACCCC
1 TGAATTGCACATACGTGCCCCTATTTGTACTTCGATACCCC
* * * *
80943527 TGAATTGTACATATGTGCCCCTGTTTGTACTTC-AGTACCCT
1 TGAATTGCACATACGTGCCCCTATTTGTACTTCGA-TACCCC
* * *
80943568 TGAATTGCACATACATGCCCCTGA-TTGTACTTCGACACCTC
1 TGAATTGCACATACGTGCCCCT-ATTTGTACTTCGATACCCC
* * * * * *
80943609 TAAATTGCACATGA-GTGCTCTTGTTTGTACTTCGGTACCCT
1 TGAATTGCACAT-ACGTGCCCCTATTTGTACTTCGATACCCC
* *
80943650 TGAATTGAATATACGTGCCCCT
1 TGAATTGCACATACGTGCCCCT
80943672 GATTACACTC
Statistics
Matches: 149, Mismatches: 29, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
39 1 0.01
40 23 0.15
41 123 0.83
42 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.34
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTATTTGTACTTCGATACCCC
Found at i:80943549 original size:21 final size:19
Alignment explanation
Indices: 80943523--80943597 Score: 51
Period size: 20 Copynumber: 3.7 Consensus size: 19
80943513 TACTTCGATA
80943523 CCCCTGAATTGTACATATGTG
1 CCCCTG-ATTGTACATA-GTG
* * *
80943544 CCCCTGTTTGTACTTCAGTA
1 CCCCTGATTGTACAT-AGTG
* * *
80943564 CCCTTGAATTGCACATACATG
1 CCCCTG-ATTGTACATA-GTG
80943585 CCCCTGATTGTAC
1 CCCCTGATTGTAC
80943598 TTCGACACCT
Statistics
Matches: 40, Mismatches: 11, Indels: 7
0.69 0.19 0.12
Matches are distributed among these distances:
20 21 0.52
21 19 0.47
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.33
Consensus pattern (19 bp):
CCCCTGATTGTACATAGTG
Found at i:80943572 original size:82 final size:81
Alignment explanation
Indices: 80943446--80943676 Score: 277
Period size: 82 Copynumber: 2.8 Consensus size: 81
80943436 AATTATCCCA
* * * *
80943446 TGAATTGCACATACGTGCCCCTG-ATATACTTCGGTACCCCTGAATTGCACATACGTGCCTCT-A
1 TGAATTGCACATA-GTGCCCCTGTTTGTACTTCGGTACCCTTGAATTGCACATACGTGCCCCTGA
*
80943509 TTTATACTTCGATACCCC
65 -TTATACTTCGACACCCC
* * *
80943527 TGAATTGTACATATGTGCCCCTGTTTGTACTTCAGTACCCTTGAATTGCACATACATGCCCCTGA
1 TGAATTGCACATA-GTGCCCCTGTTTGTACTTCGGTACCCTTGAATTGCACATACGTGCCCCTGA
* *
80943592 TTGTACTTCGACACCTC
65 TTATACTTCGACACCCC
* * * * *
80943609 TAAATTGCACATGAGTGCTCTTGTTTGTACTTCGGTACCCTTGAATTGAATATACGTGCCCCTGA
1 TGAATTGCACAT-AGTGCCCCTGTTTGTACTTCGGTACCCTTGAATTGCACATACGTGCCCCTGA
80943674 TTA
65 TTA
80943677 CACTCCTGGA
Statistics
Matches: 127, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
81 21 0.17
82 104 0.82
83 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.34
Consensus pattern (81 bp):
TGAATTGCACATAGTGCCCCTGTTTGTACTTCGGTACCCTTGAATTGCACATACGTGCCCCTGAT
TATACTTCGACACCCC
Found at i:80943668 original size:123 final size:122
Alignment explanation
Indices: 80943446--80943672 Score: 296
Period size: 123 Copynumber: 1.9 Consensus size: 122
80943436 AATTATCCCA
* ** *
80943446 TGAATTGCACATACGTGCCCCTGATATACTTCGGTACCCCTGAATTGCACATACGTGCCTCTATT
1 TGAATTGCACATACATGCCCCTGATATACTTCGACACCCCTAAATTGCACATACGTGCCTCTATT
* *
80943511 TATACTTCGATACCCCTGAATTGTACATATGTGCCCCTGTTTGTACTTCAGTACCCT
66 TATACTTCGATACCCCTGAATTGAACATACGTGCCCCTGTTTGTACTTCAGTACCCT
* *
80943568 TGAATTGCACATACATGCCCCTGATTGTACTTCGACACCTCTAAATTGCACATGA-GTG-CTCTT
1 TGAATTGCACATACATGCCCCTGA-TATACTTCGACACCCCTAAATTGCACAT-ACGTGCCTC-T
* * * * *
80943631 GTTTGTACTTCGGTACCCTTGAATTGAATATACGTGCCCCTG
63 ATTTATACTTCGATACCCCTGAATTGAACATACGTGCCCCTG
80943673 ATTACACTCC
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
122 26 0.29
123 62 0.70
124 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.33
Consensus pattern (122 bp):
TGAATTGCACATACATGCCCCTGATATACTTCGACACCCCTAAATTGCACATACGTGCCTCTATT
TATACTTCGATACCCCTGAATTGAACATACGTGCCCCTGTTTGTACTTCAGTACCCT
Found at i:80945677 original size:46 final size:46
Alignment explanation
Indices: 80945610--80945787 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
80945600 TGTAACCTGC
* *
80945610 CCATAAGTGAGCTCGGACCCAACTCAACGAGCTCGGGTGTTTGCAT
1 CCATAAGTGAACTCGGACCCAACTCAACGAGCTCGGATGTTTGCAT
*
80945656 CCATAAGTGAACTCGGACCCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACCCAACTCAACGAGCTCGGATG--T--TTGCAT
* * * ** *
80945706 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACCCAACTCAACGAGCTCGGATGTTTGCAT
* * * *
80945749 CCATAAGTGAACTCGGACTCAACTCCACAAGTTCGGATG
1 CCATAAGTGAACTCGGACCCAACTCAACGAGCTCGGATG
80945788 CTCAACCATC
Statistics
Matches: 110, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 3 0.03
46 65 0.59
47 28 0.25
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACCCAACTCAACGAGCTCGGATGTTTGCAT
Found at i:80945804 original size:46 final size:45
Alignment explanation
Indices: 80945710--80945796 Score: 113
Period size: 46 Copynumber: 1.9 Consensus size: 45
80945700 TTACATCTCA
* * *
80945710 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACAAGTTCGGA-ATGCGCAACCATAAG
* *
80945756 TGAACTCGGACTCAACTCCACAAGTTCGG-ATGCTCAACCAT
1 TGAACTCGGACTCAACTCAACAAGTTCGGAATGCGCAACCAT
80945797 CCTAGTGACA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
44 9 0.25
46 27 0.75
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACAAGTTCGGAATGCGCAACCATAAG
Found at i:80953939 original size:6 final size:6
Alignment explanation
Indices: 80953931--80953994 Score: 55
Period size: 6 Copynumber: 11.2 Consensus size: 6
80953921 TGAAAACTAG
* * *
80953931 AAATAG AAATAA AAAT-A AAATAA AAATAA AAACAA AAGA-AA AAGT-A
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AA-ATAA AAATAA
*
80953977 AAAT-A AAGTAA AAATAA A
1 AAATAA AAATAA AAATAA A
80953995 TGGACTCAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
5 13 0.27
6 34 0.71
7 1 0.02
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (6 bp):
AAATAA
Found at i:80953953 original size:11 final size:11
Alignment explanation
Indices: 80953931--80953994 Score: 60
Period size: 11 Copynumber: 5.6 Consensus size: 11
80953921 TGAAAACTAG
80953931 AAATAGAAATAA
1 AAATA-AAATAA
80953943 AAATAAAATAA
1 AAATAAAATAA
80953954 AAATAAAA-ACA
1 AAATAAAATA-A
*
80953965 AAAGAAAA-AGTA
1 AAATAAAATA--A
*
80953977 AAATAAAGTAA
1 AAATAAAATAA
80953988 AAATAAA
1 AAATAAA
80953995 TGGACTCAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
10 1 0.02
11 31 0.69
12 12 0.27
13 1 0.02
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:80953957 original size:17 final size:17
Alignment explanation
Indices: 80953931--80953994 Score: 76
Period size: 17 Copynumber: 3.8 Consensus size: 17
80953921 TGAAAACTAG
*
80953931 AAATAGAAATAAAAATA
1 AAATAAAAATAAAAATA
*
80953948 AAATAAAAATAAAAACA
1 AAATAAAAATAAAAATA
*
80953965 AAAGAAAAAGT-AAAATA
1 AAATAAAAA-TAAAAATA
*
80953982 AAGTAAAAATAAA
1 AAATAAAAATAAA
80953995 TGGACTCAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
16 1 0.03
17 37 0.95
18 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (17 bp):
AAATAAAAATAAAAATA
Found at i:80957507 original size:40 final size:40
Alignment explanation
Indices: 80957316--80957500 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
80957306 TTGAATGATG
* *
80957316 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * * *
80957356 TCCGGACAAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80957396 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
80957435 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
80957476 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80957501 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 33 0.27
40 77 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80957522 original size:79 final size:79
Alignment explanation
Indices: 80957369--80957533 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
80957359 GGACAAAGAT
* * **
80957369 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
* *
80957434 ATTCGGGTTAAGTC
66 ATTCCGGTTAAATC
* *
80957448 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
80957511 TATA-TCCGGTTAAATT
63 TAAATTCCGGTTAAATC
80957527 CCGAAGG
1 CCGAAGG
80957534 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.67
80 22 0.30
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATTCCGGTTAAATC
Found at i:80965386 original size:40 final size:40
Alignment explanation
Indices: 80965195--80965379 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
80965185 TTGAATGATG
** *
80965195 TCCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-CGAGTTACTAA-A
* * * * * *
80965235 TCCGGACTAAGAT-TCGAAAGCATTTGCGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
80965275 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
80965314 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
80965355 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80965380 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 31 0.26
40 78 0.66
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80965401 original size:79 final size:79
Alignment explanation
Indices: 80965249--80965412 Score: 181
Period size: 79 Copynumber: 2.1 Consensus size: 79
80965239 GACTAAGATT
* * **
80965249 CGAAAGCATTTGCGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CGAAGGCATTTGCGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
* *
80965314 TTCGGGTTAAGTCC
66 TTCCGGTTAAATCC
* * *
80965328 CGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CGAAGGCATTTGCGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CT
* *
80965391 ATA-TCCGGTTAAATTC
63 AAATTCCGGTTAAATCC
80965407 CGAAGG
1 CGAAGG
80965413 TACGTGATTT
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.66
80 22 0.31
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CGAAGGCATTTGCGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TTCCGGTTAAATCC
Found at i:80979940 original size:38 final size:38
Alignment explanation
Indices: 80979881--80980257 Score: 207
Period size: 38 Copynumber: 8.9 Consensus size: 38
80979871 TTTCAAATTA
* *
80979881 ACATGTATAACCATGGCATATCCACTTAGCACCACGTT
1 ACATGTTTAACCATGGTATATCCACTTAGCACCACGTT
* *
80979919 ACATGTTTAACTATGGTATATCCACTTAGCACCACATT
1 ACATGTTTAACCATGGTATATCCACTTAGCACCACGTT
*
80979957 ACATGTATCAGTATATGTAATCATGGTATATCCACTTAGCACCACGTT
1 AC----AT--G--T-T-TAACCATGGTATATCCACTTAGCACCACGTT
* * * *
80980005 ACACGTATAACCGTGATATATCCACTTAGCACCACGTT
1 ACATGTTTAACCATGGTATATCCACTTAGCACCACGTT
* *
80980043 A-ATGTATCAAAATATGTAACCGTGGAATATCCACTTAGCACCACGTT
1 ACATG--------T-T-TAACCATGGTATATCCACTTAGCACCACGTT
*
80980090 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTGAAT
1 ACATGTTTAACCATGGTATATCCACTTAGCACCACGT---T
* * * *
80980131 GAATCAATATATGTAATCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGT-T-TAACCATGGTATATCCACTTAGCACCACGTT
* * *
80980175 ACATGTATCAATATGTGTAATCGTGGTATAGCCACTTAGCACCACGTT
1 ACATG--------T-T-TAACCATGGTATATCCACTTAGCACCACGTT
* *
80980223 ACATGTATAACCGTGGTATATCCACTTAGCACCAC
1 ACATGTTTAACCATGGTATATCCACTTAGCACCAC
80980258 ATTTTTCCAT
Statistics
Matches: 274, Mismatches: 27, Indels: 76
0.73 0.07 0.20
Matches are distributed among these distances:
37 2 0.01
38 120 0.44
39 1 0.00
40 5 0.02
41 2 0.01
42 4 0.01
43 1 0.00
44 4 0.01
45 4 0.01
46 2 0.01
47 59 0.22
48 70 0.26
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (38 bp):
ACATGTTTAACCATGGTATATCCACTTAGCACCACGTT
Found at i:80980081 original size:47 final size:48
Alignment explanation
Indices: 80980012--80980230 Score: 248
Period size: 47 Copynumber: 4.8 Consensus size: 48
80980002 GTTACACGTA
*
80980012 TAACCGT-GATATATCCACTTAGCACCACGTTA-ATGTATCAAAATATG
1 TAACCGTGGA-ATATCCACTTAGCACCACGTTACATGTATCAATATATG
80980059 TAACCGTGGAATATCCACTTAGCACCACGTTACATG--------T-T-
1 TAACCGTGGAATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * *
80980097 TAACCGTGGTATATCCACTTAGCACCACGTGA-ATGAATCAATATATG
1 TAACCGTGGAATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * *
80980144 TAATCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGAATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * *
80980192 TAATCGTGGTATAGCCACTTAGCACCACGTTACATGTAT
1 TAACCGTGGAATATCCACTTAGCACCACGTTACATGTAT
80980231 AACCGTGGTA
Statistics
Matches: 150, Mismatches: 9, Indels: 25
0.82 0.05 0.14
Matches are distributed among these distances:
37 3 0.02
38 30 0.20
39 1 0.01
40 1 0.01
45 1 0.01
46 1 0.01
47 58 0.39
48 55 0.37
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.30
Consensus pattern (48 bp):
TAACCGTGGAATATCCACTTAGCACCACGTTACATGTATCAATATATG
Found at i:80980101 original size:85 final size:85
Alignment explanation
Indices: 80979888--80980180 Score: 433
Period size: 85 Copynumber: 3.4 Consensus size: 85
80979878 TTAACATGTA
**
80979888 TAACCATGGCATATCCACTTAGCACCACGTTACATGTTTAACTATGGTATATCCACTTAGCACCA
1 TAACCATGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
* *
80979953 CATTACATGTATCAGTATATG
66 CGTTA-ATGTATCAATATATG
* * * * *
80979974 TAATCATGGTATATCCACTTAGCACCACGTTACACGTATAACCGTGATATATCCACTTAGCACCA
1 TAACCATGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
*
80980039 CGTTAATGTATCAAAATATG
66 CGTTAATGTATCAATATATG
* *
80980059 TAACCGTGGAATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCATGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
* *
80980124 CGTGAATGAATCAATATATG
66 CGTTAATGTATCAATATATG
* *
80980144 TAATCGTGGCATATCCACTTAGCACCACGTTACATGT
1 TAACCATGGCATATCCACTTAGCACCACGTTACATGT
80980181 ATCAATATGT
Statistics
Matches: 186, Mismatches: 21, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
85 124 0.67
86 62 0.33
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (85 bp):
TAACCATGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTAATGTATCAATATATG
Found at i:80980210 original size:48 final size:48
Alignment explanation
Indices: 80980092--80980230 Score: 208
Period size: 48 Copynumber: 2.9 Consensus size: 48
80980082 ACCACGTTAC
* * * *
80980092 ATGTTTAACCGTGGTATATCCACTTAGCACCACGTGA-ATGAATCAAT
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
80980139 ATATGTAATCGTGGCATATCCACTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
*
80980187 ATGTGTAATCGTGGTATAGCCACTTAGCACCACGTTACATGTAT
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTAT
80980231 AACCGTGGTA
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 32 0.39
48 50 0.61
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (48 bp):
ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:80982030 original size:20 final size:20
Alignment explanation
Indices: 80981985--80982033 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
80981975 CACTAATAAG
*
80981985 ATTAATTAGAATTAAAGTAA
1 ATTAATTAAAATTAAAGTAA
* *
80982005 ACTAATTAAAGATTAAA-TTA
1 ATTAATTAAA-ATTAAAGTAA
80982025 ATTAATTAA
1 ATTAATTAA
80982034 GGTAATCAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (20 bp):
ATTAATTAAAATTAAAGTAA
Found at i:80983743 original size:29 final size:29
Alignment explanation
Indices: 80983711--80983946 Score: 189
Period size: 29 Copynumber: 8.3 Consensus size: 29
80983701 TCAGAGTCTT
* * *
80983711 CCACAAAGGCGTCCTTTTAAAAGAGTTAG
1 CCACAAAGGCATCCTTTTAACAGAGATAG
* *
80983740 CCACAAAGGTATCCTATTAACAGAGATAG
1 CCACAAAGGCATCCTTTTAACAGAGATAG
* * *
80983769 CCACAAAGTCTTCCTTTTAACAGAGATAT
1 CCACAAAGGCATCCTTTTAACAGAGATAG
* * *
80983798 CTACAAAGGAATCCTTTTAAGAGAGATAG
1 CCACAAAGGCATCCTTTTAACAGAGATAG
* * ** **
80983827 CCACAAAGGCATTCATTTAACTTAGACCG
1 CCACAAAGGCATCCTTTTAACAGAGATAG
* * * * *
80983856 CCATAAAGACTTCCTTGTAACAAAGATCA-
1 CCACAAAGGCATCCTTTTAACAGAGAT-AG
*
80983885 CCACAAAGGCTTCCTTTT---AGAGATAG
1 CCACAAAGGCATCCTTTTAACAGAGATAG
* *
80983911 CCACAAAGGCGTCC-ATT--CAGAGATAG
1 CCACAAAGGCATCCTTTTAACAGAGATAG
80983937 CCACAAAGGC
1 CCACAAAGGC
80983947 TCATCTATAT
Statistics
Matches: 163, Mismatches: 41, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
25 3 0.02
26 36 0.22
29 124 0.76
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (29 bp):
CCACAAAGGCATCCTTTTAACAGAGATAG
Found at i:80983828 original size:87 final size:85
Alignment explanation
Indices: 80983711--80983944 Score: 244
Period size: 87 Copynumber: 2.8 Consensus size: 85
80983701 TCAGAGTCTT
* * *
80983711 CCACAAAGGCGTCCTTTTAAAAGAGTTAGCCACAAAGGTATCCTATTAACAGAGATAGCCACAAA
1 CCACAAAGGCATCCTTTT-AAAGAGATAGCCACAAAGGCATCC-ATTAACAGAGATAGCCACAAA
* * *
80983776 GTCTTCCTTTTAACAGAGAT-A
64 GACTTCCTTGTAACAAAGATCA
* * * ** ** *
80983797 TCTACAAAGGAATCCTTTTAAGAGAGATAGCCACAAAGGCATTCATTTAACTTAGACCGCCATAA
1 -CCACAAAGGCATCCTTTTAA-AGAGATAGCCACAAAGGCATCCA-TTAACAGAGATAGCCACAA
80983862 AGACTTCCTTGTAACAAAGATCA
63 AGACTTCCTTGTAACAAAGATCA
* *
80983885 CCACAAAGGCTTCCTTTT--AGAGATAGCCACAAAGGCGTCCATT--CAGAGATAGCCACAAAG
1 CCACAAAGGCATCCTTTTAAAGAGATAGCCACAAAGGCATCCATTAACAGAGATAGCCACAAAG
80983945 GCTCATCTAT
Statistics
Matches: 120, Mismatches: 24, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
81 12 0.10
83 2 0.02
84 21 0.17
86 3 0.03
87 81 0.68
88 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (85 bp):
CCACAAAGGCATCCTTTTAAAGAGATAGCCACAAAGGCATCCATTAACAGAGATAGCCACAAAGA
CTTCCTTGTAACAAAGATCA
Found at i:80984437 original size:24 final size:24
Alignment explanation
Indices: 80984410--80984459 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
80984400 AAAAAGTAAA
80984410 ATTGCATTACAAGATTTCAAAAAG
1 ATTGCATTACAAGATTTCAAAAAG
80984434 ATTGCATTACAAGATTTCAAAAAG
1 ATTGCATTACAAGATTTCAAAAAG
80984458 AT
1 AT
80984460 GAGTTTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.30
Consensus pattern (24 bp):
ATTGCATTACAAGATTTCAAAAAG
Found at i:80987754 original size:37 final size:37
Alignment explanation
Indices: 80987704--80987782 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
80987694 TTATTACGAA
* * *
80987704 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
80987741 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
80987778 GTCTT
1 GTCTT
80987783 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:80987977 original size:49 final size:48
Alignment explanation
Indices: 80987900--80988057 Score: 273
Period size: 49 Copynumber: 3.2 Consensus size: 48
80987890 GCCCTTCGGG
80987900 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATA-AC
80987950 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATA-AC
*
80987999 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-AC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAAC
80988046 ACTTTCACATTC
1 ACTTTCACATTC
80988058 TCAAAGTAAG
Statistics
Matches: 106, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
47 14 0.13
49 88 0.83
50 4 0.04
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAAC
Found at i:80988376 original size:24 final size:23
Alignment explanation
Indices: 80988328--80988385 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
80988318 TAATCAAACA
80988328 TTATTATATATATATCATATCATT
1 TTATTAT-TATATATCATATCATT
*
80988352 TTATTATTAT-TATCATTATTTATT
1 TTATTATTATATATCA-TA-TCATT
80988376 TTATT-TTATA
1 TTATTATTATA
80988386 CTTTTCAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.17
23 9 0.30
24 16 0.53
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATTATTATATATCATATCATT
Found at i:80993403 original size:28 final size:28
Alignment explanation
Indices: 80993362--80993444 Score: 78
Period size: 28 Copynumber: 3.0 Consensus size: 28
80993352 TTCATATATT
* * *
80993362 ACCACAAAGCCTTCAATTTCTTAGATTC
1 ACCACGAAGACTTCCATTTCTTAGATTC
* *
80993390 ACCATGAAGGCTTCCATTT-TATAGATTC
1 ACCACGAAGACTTCCATTTCT-TAGATTC
* * *
80993418 TCTACGAAGACTTCCATTTCATAGATT
1 ACCACGAAGACTTCCATTTCTTAGATT
80993445 GCCACAAAGG
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
27 1 0.02
28 43 0.98
ACGTcount: A:0.30, C:0.24, G:0.11, T:0.35
Consensus pattern (28 bp):
ACCACGAAGACTTCCATTTCTTAGATTC
Found at i:80993464 original size:83 final size:83
Alignment explanation
Indices: 80993256--80993465 Score: 212
Period size: 83 Copynumber: 2.5 Consensus size: 83
80993246 AAATGACCAC
* * * *
80993256 AAAGGTTTCCATTTCTTAGATATGCCACAAAGGCTTCCATTTCAAAAATTCTCCACGACAGCTTC
1 AAAGGATTCCATTTCATAGAT-TGCCACAAAGGCTTCCATTTCTAAAATTCACCACGACAGCTTC
*
80993321 CATTTTATAGATTTTTCAT
65 CATTTTATAGATTTCTCAT
* * * * * * * * *
80993340 AAAGGAATCTATTTCATATATTACCACAAAGCCTTCAATTTCTTAGATTCACCATGA-AGGCTTC
1 AAAGGATTCCATTTCATAGATTGCCACAAAGGCTTCCATTTCTAAAATTCACCACGACA-GCTTC
80993404 CATTTTATAGA-TTCTC-T
65 CATTTTATAGATTTCTCAT
*
80993421 ACGAA-GACTTCCATTTCATAGATTGCCACAAAGGTTTCCATTTCT
1 A--AAGGA-TTCCATTTCATAGATTGCCACAAAGGCTTCCATTTCT
80993466 CTAGCAAGTT
Statistics
Matches: 101, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
81 2 0.02
82 7 0.07
83 76 0.75
84 16 0.16
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.36
Consensus pattern (83 bp):
AAAGGATTCCATTTCATAGATTGCCACAAAGGCTTCCATTTCTAAAATTCACCACGACAGCTTCC
ATTTTATAGATTTCTCAT
Found at i:81007021 original size:13 final size:13
Alignment explanation
Indices: 81007003--81007032 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
81006993 TGTGTTTAAG
81007003 AAAACTGAGTCAC
1 AAAACTGAGTCAC
81007016 AAAACTGAGTCAC
1 AAAACTGAGTCAC
81007029 AAAA
1 AAAA
81007033 ATAATTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.20, G:0.13, T:0.13
Consensus pattern (13 bp):
AAAACTGAGTCAC
Found at i:81009463 original size:38 final size:38
Alignment explanation
Indices: 81009398--81009510 Score: 118
Period size: 38 Copynumber: 2.9 Consensus size: 38
81009388 ATTTGATGTG
* *
81009398 TATCCGGGCTTAAAGACCCGCAAGCTTCGTGCTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
**
81009438 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
* * * * * *
81009476 TATCCGAGATAAATCTCGTAGGCCTAGTGCTGGTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
81009511 TTATATTCGG
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
38 50 0.79
39 5 0.08
40 8 0.13
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:81017720 original size:33 final size:33
Alignment explanation
Indices: 81017673--81017738 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
81017663 CTCCCACTTT
81017673 CCTTGATCCACTCCTCAAAACTCTCCTCCAATC
1 CCTTGATCCACTCCTCAAAACTCTCCTCCAATC
*
81017706 CCTTGATCCGCTCCTCAAAACTCTCCTCCAATC
1 CCTTGATCCACTCCTCAAAACTCTCCTCCAATC
81017739 TCTCAACCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.23, C:0.45, G:0.05, T:0.27
Consensus pattern (33 bp):
CCTTGATCCACTCCTCAAAACTCTCCTCCAATC
Found at i:81019598 original size:27 final size:27
Alignment explanation
Indices: 81019543--81019604 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
81019533 TATGTCGGTC
*
81019543 ATTTTACACTACAAGCGTACTTCGGTA
1 ATTTTACACTACAAGCGTACTTCGATA
* * * *
81019570 ATTTTATACTACAAGGGTATTTTGATA
1 ATTTTACACTACAAGCGTACTTCGATA
81019597 ATTTTACA
1 ATTTTACA
81019605 AATTGGGGGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGCGTACTTCGATA
Found at i:81019614 original size:27 final size:27
Alignment explanation
Indices: 81019583--81020052 Score: 478
Period size: 27 Copynumber: 17.7 Consensus size: 27
81019573 TTATACTACA
* *
81019583 AGGGTATTTTGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * * *
81019610 GGGGTGTTTCGGTAATTTTAAAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
81019637 AGGATATTTTGGTAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
** *
81019664 ATAGTATTT-TAGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
81019691 AGGGTGTTTC-AGTAATTTCACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
81019718 GGGGTATTTCGATAATTTTA-TAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
81019744 AGGGTATTTC-AGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
81019770 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
81019797 AGGGTATTTCAATAATTTCAC-AATCG
1 AGGGTATTTCGATAATTTTACAAATCG
81019823 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
81019850 AGGGTATTT-TAGTAATTTCAC-ACTCA
1 AGGGTATTTCGA-TAATTTTACAAATCG
81019876 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
81019903 AGGGTATTTCGGTAATTTCAC-AATCG
1 AGGGTATTTCGATAATTTTACAAATCG
** *
81019929 A-GGTATTTTAATAATTTCA-AAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
81019954 AGGGTATTTCGATAATTTTATAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
**
81019981 AGGGTATTTC-AGTAATTTTGTAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
81020008 AGGGTATTTCGGTAATTTTACAAACCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
81020035 AGGGTATTTCGGTAATTT
1 AGGGTATTTCGATAATTT
81020053 CTCTTTATTA
Statistics
Matches: 371, Mismatches: 56, Indels: 32
0.81 0.12 0.07
Matches are distributed among these distances:
25 22 0.06
26 109 0.29
27 239 0.64
28 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:81019764 original size:53 final size:54
Alignment explanation
Indices: 81019595--81020052 Score: 504
Period size: 53 Copynumber: 8.6 Consensus size: 54
81019585 GGTATTTTGA
* * * * * * * * **
81019595 TAATTTTACAAATTGGGGGTGTTTCGGTAATTTTAAAAATTGAGGATATTTTGG
1 TAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAG
* * ** * *
81019649 TAATTTTACAAATCAATAGTATTT-TAGTAATTTTACAAATCGAGGGTGTTTCAG
1 TAATTTCACAAATCGAGGGTATTTCGA-TAATTTTACAAATCGAGGGTATTTCAG
* * *
81019703 TAATTTCACAAATCGGGGGTATTTCGATAATTTTA-TAATTGAGGGTATTTCAG
1 TAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAG
*
81019756 TAATTTCAC-AATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAA
1 TAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAG
*
81019809 TAATTTCAC-AATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTAG
1 TAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAG
* * *
81019862 TAATTTCAC-ACTCAAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGG
1 TAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAG
** *
81019915 TAATTTCAC-AATCGA-GGTATTTTAATAATTTCA-AAATCGAGGGTATTTC-G
1 TAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAG
* * ** *
81019965 ATAATTTTATAAATCGAGGGTATTTC-AGTAATTTTGTAAATCGAGGGTATTTCGG
1 -TAATTTCACAAATCGAGGGTATTTCGA-TAATTTTACAAATCGAGGGTATTTCAG
* * *
81020020 TAATTTTACAAACCGAGGGTATTTCGGTAATTT
1 TAATTTCACAAATCGAGGGTATTTCGATAATTT
81020053 CTCTTTATTA
Statistics
Matches: 348, Mismatches: 46, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
50 1 0.00
51 23 0.07
52 46 0.13
53 165 0.47
54 111 0.32
55 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (54 bp):
TAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAG
Found at i:81020407 original size:28 final size:28
Alignment explanation
Indices: 81020369--81020488 Score: 168
Period size: 28 Copynumber: 4.3 Consensus size: 28
81020359 TGGCCACTTT
*
81020369 AGGCCCAATCTCGTTCACATGGCCAATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
*
81020397 AGGCCTAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
* *
81020425 AGGCCTAATCTCTTTCACATGGCCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
* * * *
81020453 AGGCCCAATCACATTAATATGGCCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
81020481 AGGCCCAA
1 AGGCCCAA
81020489 CTACTTCTCA
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 84 1.00
ACGTcount: A:0.26, C:0.35, G:0.17, T:0.23
Consensus pattern (28 bp):
AGGCCCAATCTCGTTCACATGGCCCATC
Found at i:81025715 original size:40 final size:40
Alignment explanation
Indices: 81025653--81025828 Score: 241
Period size: 40 Copynumber: 4.4 Consensus size: 40
81025643 AAACCAAGTA
* * * *
81025653 CCTTCGGGATTTA-ACCGGATATAACT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATAT-AGTAACTCGCACAAATG
**
81025692 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
81025732 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
81025772 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
81025812 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
81025829 CGTTATCATC
Statistics
Matches: 123, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 15 0.12
40 108 0.88
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:81031898 original size:40 final size:39
Alignment explanation
Indices: 81031854--81031975 Score: 199
Period size: 40 Copynumber: 3.1 Consensus size: 39
81031844 CGGGATTTAA
*
81031854 CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGC
*
81031894 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGC
81031934 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGC
81031974 CC
1 CC
81031976 CGTTATCATC
Statistics
Matches: 77, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
39 2 0.03
40 74 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:81033739 original size:49 final size:49
Alignment explanation
Indices: 81033667--81033936 Score: 216
Period size: 49 Copynumber: 5.6 Consensus size: 49
81033657 ACATCTAAGT
*
81033667 CGATGCCATGTCCTAGACAGGTCTTACACTGACTTTCATATATCGAGGC
1 CGATGCCATGTCCTAGACAGGTCTTACACTGACTCTCATATATCGAGGC
* * * * *
81033716 CGATGCCAAGTCCTAGACAGGTCTTACACTGGCTCTCATCTATCGATGT
1 CGATGCCATGTCCTAGACAGGTCTTACACTGACTCTCATATATCGAGGC
* * * * *
81033765 CGATGCCATGTCCCAGATAGGTCTTACACT-AGCT-TGCATATCTTGAGGT
1 CGATGCCATGTCCTAGACAGGTCTTACACTGA-CTCT-CATATATCGAGGC
* * ** * * * *
81033814 TGATG-CATGTCCCAGACATATCTTACACT-AGCTCTCATCT-T-AATGT
1 CGATGCCATGTCCTAGACAGGTCTTACACTGA-CTCTCATATATCGAGGC
* * *
81033860 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT-GTGGC
1 CGATGCCATGTCCTAGACA-GGTCTTACACTGACTCTCATATATCGAGGC
* * *
81033908 TGATG-CATGTCCCAGACATGTCTTACACT
1 CGATGCCATGTCCTAGACAGGTCTTACACT
81033937 AGCACACATC
Statistics
Matches: 182, Mismatches: 32, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
46 17 0.09
47 27 0.15
48 52 0.29
49 86 0.47
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (49 bp):
CGATGCCATGTCCTAGACAGGTCTTACACTGACTCTCATATATCGAGGC
Found at i:81033932 original size:94 final size:93
Alignment explanation
Indices: 81033658--81033939 Score: 336
Period size: 98 Copynumber: 3.0 Consensus size: 93
81033648 AGGGCTGTCA
* * *
81033658 CATC-TAA-GTCGATGCCATGTCCTAGACAGGTCTTACACTGACTTTCATATATCGAGGCCGATG
1 CATCTTAATGTCGATGCCATGTCCCAGACAGGTCTTACACTGGC-TTCATATAT-GAGGCTGATG
* * * *
81033721 CCAAGTCCTAGACAGGTCTTACACTGGCTCT
64 -CATGTCCCAGACATGTCTTACACTAGCTCT
* * * * *
81033752 CATCTATCGATGTCGATGCCATGTCCCAGATAGGTCTTACACTAGCTTGCATATCTTGAGGTTGA
1 CATCT-T-AATGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTT-CATAT-ATGAGGCTGA
*
81033817 TGCATGTCCCAGACATATCTTACACTAGCTCT
62 TGCATGTCCCAGACATGTCTTACACTAGCTCT
*
81033849 CATCTTAATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGTGGCTGATG
1 CATCTTAATGTCGATGCCATGTCCCAGACA-GGTCTTACACTGGCT-TCATATATGAGGCTGATG
81033913 CATGTCCCAGACATGTCTTACACTAGC
64 CATGTCCCAGACATGTCTTACACTAGC
81033940 ACACATCCAT
Statistics
Matches: 160, Mismatches: 20, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
94 39 0.24
95 22 0.14
96 20 0.12
97 34 0.21
98 44 0.28
99 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (93 bp):
CATCTTAATGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTTCATATATGAGGCTGATGCA
TGTCCCAGACATGTCTTACACTAGCTCT
Done.