Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 239 of 373
Found at i:81037250 original size:93 final size:93
Alignment explanation
Indices: 81037142--81037312 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
81037132 ACCCCTAAGT
* *****
81037142 GAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81037207 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* **
81037235 GAACTCGGACTCAACTCAACGAGTTCAAACATTCGCATCTGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81037300 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81037313 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81037328 original size:46 final size:45
Alignment explanation
Indices: 81037135--81037314 Score: 175
Period size: 46 Copynumber: 3.9 Consensus size: 45
81037125 GTAACCTACC
* * * *
81037135 CCTAAGTGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCAT
*
81037180 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-CTCG---CAT
* * ** ***
81037230 -CTCA-CGAACTCGGACTCAACTCAACGAGTTCAAACATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCAT
*
81037273 CTGTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 C-CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
81037315 AACCATCCTA
Statistics
Matches: 106, Mismatches: 21, Indels: 15
0.75 0.15 0.11
Matches are distributed among these distances:
43 3 0.03
45 4 0.04
46 64 0.60
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCAT
Found at i:81045998 original size:17 final size:18
Alignment explanation
Indices: 81045956--81046004 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
81045946 TGGGCCACGT
*
81045956 TGGGCCAAACTGGGCTGTG
1 TGGGCCCAA-TGGGCTGTG
*
81045975 CGGGCCCAATGGGCT-TG
1 TGGGCCCAATGGGCTGTG
81045992 TGGGCCCACATGG
1 TGGGCCCA-ATGG
81046005 ATAAAATGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 9 0.35
18 10 0.38
19 7 0.27
ACGTcount: A:0.14, C:0.27, G:0.41, T:0.18
Consensus pattern (18 bp):
TGGGCCCAATGGGCTGTG
Found at i:81051852 original size:48 final size:47
Alignment explanation
Indices: 81051779--81051952 Score: 210
Period size: 48 Copynumber: 3.7 Consensus size: 47
81051769 ATGTCAAACT
*
81051779 GATGCCATGTCCCAGACAGGTCTTACACTAGCT-TGCATAATTCGAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTCT-CAT-ATT-GAGGCC
* * * * * *
81051828 GATG-CATGTCCTAGACATGCCTTACACTAGCTCTCGTCTTAATGCC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATATTGAGGCC
* *
81051874 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATTGTGGCT
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCATATTGAGGCC
81051922 GATG-CATGTCCCAGACATGTCTTACACTAGC
1 GATGCCATGTCCCAGACATGTCTTACACTAGC
81051953 ACACATCCAC
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
46 21 0.20
47 29 0.27
48 52 0.49
49 5 0.05
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATATTGAGGCC
Found at i:81051940 original size:94 final size:95
Alignment explanation
Indices: 81051779--81051952 Score: 273
Period size: 94 Copynumber: 1.8 Consensus size: 95
81051769 ATGTCAAACT
*
81051779 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATAATTCGAGGCCGATGCATGTCCTAGAC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATAATTCGAGGCCGATGCATGTCCCAGAC
81051844 ATGCCTTACACTAGCTCTCGTCTTAATGCC
66 ATGCCTTACACTAGCTCTCGTCTTAATGCC
* *
81051874 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CAT-ATT-GTGGCTGATGCATGTCCCAG
1 GATGCCATGTCCCAGACA-GGTCTTACACTAGCT-TGCATAATTCGAGGCCGATGCATGTCCCAG
*
81051936 ACATGTCTTACACTAGC
64 ACATGCCTTACACTAGC
81051953 ACACATCCAC
Statistics
Matches: 73, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
94 33 0.45
95 21 0.29
96 18 0.25
97 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (95 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATAATTCGAGGCCGATGCATGTCCCAGAC
ATGCCTTACACTAGCTCTCGTCTTAATGCC
Found at i:81053417 original size:29 final size:30
Alignment explanation
Indices: 81053383--81053447 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 30
81053373 TTTTTTAGCG
81053383 AAATTTGACTC-TCAACCTTAT-AAAAAG-TC
1 AAATTTGAC-CATCAACCTT-TCAAAAAGATC
*
81053412 AAATTTTACCATCAACCTTTCAAAAAGAATC
1 AAATTTGACCATCAACCTTTCAAAAAG-ATC
81053443 AAATT
1 AAATT
81053448 ACTCTTTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
28 2 0.06
29 22 0.71
31 7 0.23
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.31
Consensus pattern (30 bp):
AAATTTGACCATCAACCTTTCAAAAAGATC
Found at i:81055389 original size:64 final size:64
Alignment explanation
Indices: 81055308--81055491 Score: 174
Period size: 67 Copynumber: 2.8 Consensus size: 64
81055298 AGACATTATG
* * *
81055308 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTACACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTACACAAGAGAGCTACGAGATAA
* * * * * *
81055372 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTACACAAGAGAGCTACGAGAT
81055437 AA
63 AA
* ** * * **
81055439 ACTG--GCTTGGTTACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTACACAAGAGAGC
81055492 CGAACTATAT
Statistics
Matches: 95, Mismatches: 21, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
63 19 0.20
64 25 0.26
66 19 0.20
67 30 0.32
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTACACAAGAGAGCTACGAGATAA
Found at i:81066775 original size:18 final size:18
Alignment explanation
Indices: 81066752--81066787 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
81066742 TGAGAATATG
81066752 TGACTTCATGGATGAGCC
1 TGACTTCATGGATGAGCC
81066770 TGACTTCATGGATGAGCC
1 TGACTTCATGGATGAGCC
81066788 CGAAATTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (18 bp):
TGACTTCATGGATGAGCC
Found at i:81069955 original size:80 final size:82
Alignment explanation
Indices: 81069819--81070004 Score: 247
Period size: 80 Copynumber: 2.3 Consensus size: 82
81069809 TTGAATGATG
*
81069819 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
81069883 TGTGCGAGTTACTA-AA
66 TGTGCGAGTTACTATAA
* * * * * *
81069899 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC-GAGTTAAGTTCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGA-CTAAGATCCGAAGGCAT
81069962 TTGTGCGAGTTACTATAA
65 TTGTGCGAGTTACTATAA
* *
81069980 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81070005 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
79 2 0.02
80 82 0.88
81 9 0.10
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATAA
Found at i:81070011 original size:40 final size:40
Alignment explanation
Indices: 81069819--81070004 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
81069809 TTGAATGATG
* * * * *
81069819 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
**
81069859 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
81069899 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
81069939 TCCGAGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
81069980 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
81070005 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 117 0.91
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:81070011 original size:80 final size:79
Alignment explanation
Indices: 81069866--81070037 Score: 222
Period size: 80 Copynumber: 2.2 Consensus size: 79
81069856 ATATCCGGAC
* * **
81069866 TAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
81069931 TTA-CTAAATCCGAGT
66 -TAGCTAAATCCG-GT
* *
81069946 TAAGTTCCGAAGGCATTTGTGCGAGTTACTATAA-CTGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGTTCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGA
*
81070010 GTAGCTATATCCGGT
65 GTAGCTAAATCCGGT
* *
81070025 TAAATTCTGAAGG
1 TAAGTTCCGAAGG
81070038 TACATGATTT
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
79 15 0.19
80 64 0.79
81 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (79 bp):
TAAGTTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
TAGCTAAATCCGGT
Found at i:81077923 original size:40 final size:40
Alignment explanation
Indices: 81077826--81078011 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
81077816 TTGAATGTTG
* * * *
81077826 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
81077866 CCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81077906 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81077946 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * * *
81077987 -CTGGGCTATGTCTCGAAGGGATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81078012 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 117 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:81078018 original size:80 final size:79
Alignment explanation
Indices: 81077879--81078044 Score: 201
Period size: 80 Copynumber: 2.1 Consensus size: 79
81077869 GGACTAAGAT
* **
81077879 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
*
81077943 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* * * *
81077959 CCGAAGGCATTTGTGCGAGTTACTATAA-CTGGGCTATGTCTCGAAGGGATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
* *
81078023 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
81078038 CCGAAGG
1 CCGAAGG
81078045 TACGTGATTT
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
79 16 0.22
80 56 0.76
81 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:81080071 original size:180 final size:178
Alignment explanation
Indices: 81079820--81080142 Score: 520
Period size: 180 Copynumber: 1.8 Consensus size: 178
81079810 ATTGTCTCTA
* * *
81079820 AAACTAGACTCATATATCTTCTTACCATAAAATTTTCAGATTTTTTTTTAGCCAATTAGTACAGT
1 AAACTAGACTCACATATATTCTTACCATAAAATTTTCAGATTTTTGTTTAGCCAATTAGTACAGT
* *
81079885 TTATTCATTAAAGATACCCCTATTTCACTATCTAACAGTTCCGACCTCTCTTCACTAACAATTAT
66 TTATTCATTAAAGATACCCCTATTTCACTATATAACAGTTCCGACCTCTCTTCACTAAAAATTAT
*
81079950 TTATTTCATGGTACGGGACTTCAAATTAACAACCACTAATTTTCCCAG
131 TTATCTCATGGTACGGGACTTCAAATTAACAACCACTAATTTTCCCAG
*
81079998 AAACTAGACTCACATATATTCTTACCATAAAGTTTTCAGAATTTTTAGTTTAGCCAATTAGTACA
1 AAACTAGACTCACATATATTCTTACCATAAAATTTTCAG-ATTTTT-GTTTAGCCAATTAGTACA
* * * * *
81080063 GTTTATTCATTAAAGATACCCCTGTTTCATTGTATGACAGTTCTGACCTCTCTTCACTAAAAATT
64 GTTTATTCATTAAAGATACCCCTATTTCACTATATAACAGTTCCGACCTCTCTTCACTAAAAATT
81080128 ATTTATCTCATGGTA
129 ATTTATCTCATGGTA
81080143 TAGCTCTCGG
Statistics
Matches: 131, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
178 36 0.27
179 6 0.05
180 89 0.68
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (178 bp):
AAACTAGACTCACATATATTCTTACCATAAAATTTTCAGATTTTTGTTTAGCCAATTAGTACAGT
TTATTCATTAAAGATACCCCTATTTCACTATATAACAGTTCCGACCTCTCTTCACTAAAAATTAT
TTATCTCATGGTACGGGACTTCAAATTAACAACCACTAATTTTCCCAG
Found at i:81080493 original size:16 final size:16
Alignment explanation
Indices: 81080474--81080504 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81080464 AAGTGTTTTA
81080474 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
81080490 TTACATAATTTCACT
1 TTACAAAATTTCACT
81080505 CACTCCATTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:81080981 original size:151 final size:151
Alignment explanation
Indices: 81080708--81081103 Score: 623
Period size: 151 Copynumber: 2.6 Consensus size: 151
81080698 GAAGCTTTTT
* *
81080708 GGTACGCATAGTAGTCTGCACTTAGTACTACACATGCGACCTATCAATATGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * *
81080773 CTGCACTTAGTACTACACACGTGACTTATCCATCTGATACATGTAGTAGCCTACACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
* **
81080838 CATACGTGATCGAAGTTAACG
131 CACACGTGATCGAAACTAACG
* *
81080859 GGTACGCATAGAAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
81080924 CTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGT-GTCCTGCACTTAGTACT
66 CTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAG-CCTACACTTAGTACT
* *
81080988 ACACACGTGATTGAAACTATCG
130 ACACACGTGATCGAAACTAACG
* * * *
81081010 GGTATGCATAGTAGCCTGCACTTAATACTACACATGCGACCTAACAATCTGGTACACATAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
81081075 CTGCACTTAGTACTACACACGTGACCTAA
66 CTGCACTTAGTACTACACACGTGACCTAA
81081104 AACTGTCTTA
Statistics
Matches: 225, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
150 1 0.00
151 224 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
CACACGTGATCGAAACTAACG
Found at i:81081022 original size:101 final size:101
Alignment explanation
Indices: 81080708--81081098 Score: 312
Period size: 101 Copynumber: 3.9 Consensus size: 101
81080698 GAAGCTTTTT
* * * * * * * *
81080708 GGTACGCATAGTAGTCTGCACTTAGTACTACACATGCGACCTATCAATATGGTACACGTAGTAGC
1 GGTATGCATAGTAGCCTGCACTTAATACTACACACGCGACCTAACAATCTGATACACATAGTAGC
* *
81080773 CTGCACTTAGTACTACACACGTGACTT--ATCCATC-
66 CTGCACTTAGTACTACACACGTGA-TTGAAACTATCG
* * * * * * * * * * * *
81080807 TG-ATACATGTAGTAGCCTACACTTAGTACTACATACGTGATCGAAGTTAA-CGGGTACGCATAG
1 GGTATGCA--TAGTAGCCTGCACTTAATACTACACACGCGACCTAA--CAATCTGATACACATAG
* **** * * *
81080870 AAGCCTGCACTTAGTACTACACA--TGCAACCTATCAATCT
62 TAGCCTGCACTTAGTACTACACACGTG-ATTGAAACTATCG
** * * * * *
81080909 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGT-GT
1 GGTATGCATAGTAGCCTGCACTTAATACTACACACGCGACCTAACAATCTGATACACATAGTAG-
81080973 CCTGCACTTAGTACTACACACGTGATTGAAACTATCG
65 CCTGCACTTAGTACTACACACGTGATTGAAACTATCG
* *
81081010 GGTATGCATAGTAGCCTGCACTTAATACTACACATGCGACCTAACAATCTGGTACACATAGTAGC
1 GGTATGCATAGTAGCCTGCACTTAATACTACACACGCGACCTAACAATCTGATACACATAGTAGC
81081075 CTGCACTTAGTACTACACACGTGA
66 CTGCACTTAGTACTACACACGTGA
81081099 CCTAAAACTG
Statistics
Matches: 228, Mismatches: 50, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
98 3 0.01
99 5 0.02
100 58 0.25
101 153 0.67
102 6 0.03
103 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (101 bp):
GGTATGCATAGTAGCCTGCACTTAATACTACACACGCGACCTAACAATCTGATACACATAGTAGC
CTGCACTTAGTACTACACACGTGATTGAAACTATCG
Found at i:81081103 original size:50 final size:50
Alignment explanation
Indices: 81080707--81081103 Score: 395
Period size: 50 Copynumber: 7.9 Consensus size: 50
81080697 CGAAGCTTTT
* * * * * *
81080707 TGGTACGCATAGTAGTCTGCACTTAGTACTACACATGCGACCTATCAATA
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATC
* * * *
81080757 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTATCCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATC
* ** * * * * *
81080807 TGATACATGTAGTAGCCTACACTTAGTACTACATACGTGATCGAAGTTAA-C
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA--CAATC
* * * * ** *
81080858 GGGTACGCATAGAAGCCTGCACTTAGTACTACACATGCAACCTATCAATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATC
* *
81080908 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATC
* * * *
81080958 TGATACACGTAGT-GTCCTGCACTTAGTACTACACACGTGA-TTGAAACTATC
1 TGGTACACATAGTAG-CCTGCACTTAGTACTACACACGTGACCT--AACAATC
* ** * * *
81081009 GGGTATGCATAGTAGCCTGCACTTAATACTACACATGCGACCTAACAATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATC
81081059 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
81081104 AACTGTCTTA
Statistics
Matches: 278, Mismatches: 61, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
49 4 0.01
50 203 0.73
51 68 0.24
52 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATC
Found at i:81081531 original size:18 final size:20
Alignment explanation
Indices: 81081500--81081546 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
81081490 AAGAATATGT
*
81081500 TATATCATCAAAATAATCACA
1 TATAT-ATCAAATTAATCACA
*
81081521 TA-ATATCAAATTATTCACA
1 TATATATCAAATTAATCACA
81081540 TATATAT
1 TATATAT
81081547 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAATTAATCACA
Found at i:81083012 original size:43 final size:42
Alignment explanation
Indices: 81082948--81083117 Score: 193
Period size: 43 Copynumber: 4.0 Consensus size: 42
81082938 CATTAGGATT
*
81082948 ATCGATATGTAATTACATGTAAGACCATGTCTGGGACATTGGC
1 ATCGAT-TGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* *
81082991 ATTGTATTGTGATTACGTGTAAGACCATGTCTGGGACATTGGC
1 ATCG-ATTGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* * **
81083034 ATCG-TTAT-ATGAGTTGTAAGACCATGTCTGGGACATTGGC
1 ATCGATTGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* * * *
81083074 ATCGATATGTGATAACATGAAAGACCATATCTGGGATA-TGGC
1 ATCGAT-TGTGATTACATGTAAGACCATGTCTGGGACATTGGC
81083116 AT
1 AT
81083118 TATACAAGCT
Statistics
Matches: 108, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
40 33 0.31
41 4 0.04
42 8 0.07
43 61 0.56
44 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (42 bp):
ATCGATTGTGATTACATGTAAGACCATGTCTGGGACATTGGC
Found at i:81083073 original size:83 final size:82
Alignment explanation
Indices: 81082965--81083117 Score: 227
Period size: 83 Copynumber: 1.9 Consensus size: 82
81082955 TGTAATTACA
* * * * *
81082965 TGTAAGACCATGTCTGGGACATTGGCATTG-TATTGTGATTACGTGTAAGACCATGTCTGGGACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGATA-TGTGATAACATGAAAGACCATATCTGGGACA
81083029 TTGGCATCGTTATATGAGT
65 -TGGCATCGTTATATGAGT
*
81083048 TGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATAACATGAAAGACCATATCTGGGATAT
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATAACATGAAAGACCATATCTGGGACAT
81083113 GGCAT
66 GGCAT
81083118 TATACAAGCT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
82 6 0.10
83 55 0.87
84 2 0.03
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (82 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATAACATGAAAGACCATATCTGGGACAT
GGCATCGTTATATGAGT
Found at i:81083433 original size:32 final size:32
Alignment explanation
Indices: 81083392--81083457 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
81083382 TTATATGGCT
*
81083392 TACTAAGCTTTTAAAGCTTAGGCTCCGTTTGG
1 TACTAAGCTTTTAAAGCTTACGCTCCGTTTGG
81083424 TACTAAGCTTTTAAAGCTTACGCTCCGTTTGG
1 TACTAAGCTTTTAAAGCTTACGCTCCGTTTGG
81083456 TA
1 TA
81083458 ACCTGTAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (32 bp):
TACTAAGCTTTTAAAGCTTACGCTCCGTTTGG
Found at i:81087137 original size:19 final size:20
Alignment explanation
Indices: 81087113--81087154 Score: 77
Period size: 19 Copynumber: 2.1 Consensus size: 20
81087103 CAAATACCAG
81087113 AAAAGTAAATCA-TTTCCAA
1 AAAAGTAAATCATTTTCCAA
81087132 AAAAGTAAATCATTTTCCAA
1 AAAAGTAAATCATTTTCCAA
81087152 AAA
1 AAA
81087155 TCATTTTCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.55, C:0.14, G:0.05, T:0.26
Consensus pattern (20 bp):
AAAAGTAAATCATTTTCCAA
Found at i:81087157 original size:14 final size:15
Alignment explanation
Indices: 81087138--81087175 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
81087128 CCAAAAAAGT
81087138 AAATCATTTTCCA-A
1 AAATCATTTTCCAGA
81087152 AAATCATTTTCCAGA
1 AAATCATTTTCCAGA
81087167 AAAT-ATTTT
1 AAATCATTTT
81087176 ACTGGCAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.42, C:0.16, G:0.03, T:0.39
Consensus pattern (15 bp):
AAATCATTTTCCAGA
Found at i:81091682 original size:19 final size:19
Alignment explanation
Indices: 81091658--81091695 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
81091648 ATGATTGGTT
81091658 ATATTGAAAGCCTATCTAA
1 ATATTGAAAGCCTATCTAA
81091677 ATATTGAAAGCCTATCTAA
1 ATATTGAAAGCCTATCTAA
81091696 GCTTGGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.32
Consensus pattern (19 bp):
ATATTGAAAGCCTATCTAA
Found at i:81094667 original size:40 final size:40
Alignment explanation
Indices: 81094569--81094831 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
81094559 TCCTCGTTCA
* * * * *
81094569 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
81094608 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81094648 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81094688 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
81094728 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
81094768 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
81094808 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81094832 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:81094840 original size:41 final size:41
Alignment explanation
Indices: 81094763--81094840 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
81094753 TTAGTATCTC
* * *
81094763 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
81094804 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
81094841 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:81099028 original size:27 final size:26
Alignment explanation
Indices: 81098997--81099174 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
81098987 TAAATTGTAC
81098997 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
81099024 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
81099050 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
81099078 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
81099106 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
81099133 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
81099160 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81099175 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:81099113 original size:82 final size:81
Alignment explanation
Indices: 81098998--81099153 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
81098988 AAATTGTACA
* * *
81098998 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
81099062 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81099079 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
81099144 TGCGAGTTGA
65 TGCGAATTGA
81099154 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81099165 original size:82 final size:81
Alignment explanation
Indices: 81098994--81099174 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
81098984 GATTAAATTG
* * *
81098994 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
81099059 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
81099075 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
81099139 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
81099157 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81099175 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81113386 original size:23 final size:24
Alignment explanation
Indices: 81113323--81113387 Score: 78
Period size: 24 Copynumber: 2.8 Consensus size: 24
81113313 AAACTCACTG
* *
81113323 CAGCTTGTAAGAGCTTACTGTTCT
1 CAGCTAGTAAGAGCTTACTGATCT
*
81113347 CAACTAGTAAGAGCTTACTGAT-T
1 CAGCTAGTAAGAGCTTACTGATCT
* *
81113370 CAGCTCGTCAGAGCTTAC
1 CAGCTAGTAAGAGCTTAC
81113388 CGTTTCAACT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
23 16 0.46
24 19 0.54
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (24 bp):
CAGCTAGTAAGAGCTTACTGATCT
Found at i:81113394 original size:23 final size:23
Alignment explanation
Indices: 81113323--81113413 Score: 85
Period size: 23 Copynumber: 3.9 Consensus size: 23
81113313 AAACTCACTG
*
81113323 CAGCTTGTAAGAGCTTACTGTTCT
1 CAGCTAGTAAGAGCTTACTGTT-T
* *
81113347 CAACTAGTAAGAGCTTACTGATT
1 CAGCTAGTAAGAGCTTACTGTTT
* * *
81113370 CAGCTCGTCAGAGCTTACCGTTT
1 CAGCTAGTAAGAGCTTACTGTTT
* *
81113393 CAACTCAAT-AGAGCTTACTGT
1 CAGCT-AGTAAGAGCTTACTGT
81113414 CCATCAGCTC
Statistics
Matches: 54, Mismatches: 12, Indels: 3
0.78 0.17 0.04
Matches are distributed among these distances:
23 34 0.63
24 20 0.37
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (23 bp):
CAGCTAGTAAGAGCTTACTGTTT
Found at i:81113409 original size:46 final size:47
Alignment explanation
Indices: 81113323--81113412 Score: 121
Period size: 47 Copynumber: 1.9 Consensus size: 47
81113313 AAACTCACTG
* * *
81113323 CAGCTTGTAAGAGCTTACTGTTCTCAACTAGTAAGAGCTTACTGATT
1 CAGCTCGTAAGAGCTTACCGTTCTCAACTAATAAGAGCTTACTGATT
*
81113370 CAGCTCGTCAGAGCTTACCGTT-TCAACTCAAT-AGAGCTTACTG
1 CAGCTCGTAAGAGCTTACCGTTCTCAACT-AATAAGAGCTTACTG
81113413 TCCATCAGCT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
46 17 0.45
47 21 0.55
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (47 bp):
CAGCTCGTAAGAGCTTACCGTTCTCAACTAATAAGAGCTTACTGATT
Found at i:81117990 original size:20 final size:21
Alignment explanation
Indices: 81117962--81118000 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
81117952 TTTGGCATCA
*
81117962 AATGGAATAAATCA-AAAAGT
1 AATGAAATAAATCATAAAAGT
*
81117982 AATGAAATATATCATAAAA
1 AATGAAATAAATCATAAAA
81118001 TGAACAGATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.23
Consensus pattern (21 bp):
AATGAAATAAATCATAAAAGT
Found at i:81120325 original size:20 final size:20
Alignment explanation
Indices: 81120300--81120353 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
81120290 AACAAGGTTC
81120300 ACATGCCCGTGTGGCTTGGG
1 ACATGCCCGTGTGGCTTGGG
*
81120320 ACATGCCCGTGTGTCTTGGG
1 ACATGCCCGTGTGGCTTGGG
*
81120340 ACACGCCCGTGTGG
1 ACATGCCCGTGTGG
81120354 GCAGGCTGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.11, C:0.28, G:0.37, T:0.24
Consensus pattern (20 bp):
ACATGCCCGTGTGGCTTGGG
Found at i:81120392 original size:20 final size:18
Alignment explanation
Indices: 81120361--81120402 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
81120351 TGGGCAGGCT
81120361 GTGTGGATACACACGCCC
1 GTGTGGATACACACGCCC
81120379 GTGTGGATACACACGCCC
1 GTGTGGATACACACGCCC
81120397 GTGTGG
1 GTGTGG
81120403 GCAGGCTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (18 bp):
GTGTGGATACACACGCCC
Found at i:81123965 original size:49 final size:49
Alignment explanation
Indices: 81123893--81124137 Score: 319
Period size: 49 Copynumber: 4.9 Consensus size: 49
81123883 TAGCCGAAGC
* * *
81123893 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
81123942 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTAAACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * *
81123992 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * *
81124043 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* *
81124092 TATCTGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
81124138 TCACAATAGC
Statistics
Matches: 168, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 82 0.49
50 48 0.29
51 38 0.23
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:81124819 original size:29 final size:30
Alignment explanation
Indices: 81124785--81124843 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
81124775 CTTTAATACG
81124785 AACTTTGGCAAAATTAC-CATTTT-CCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
81124814 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
81124844 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 19 0.73
30 7 0.27
ACGTcount: A:0.29, C:0.27, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:81134118 original size:55 final size:53
Alignment explanation
Indices: 81133973--81134120 Score: 138
Period size: 55 Copynumber: 2.8 Consensus size: 53
81133963 AACTTGCTAT
* * *
81133973 TGCCATGTCTTGACATGGTCTTACGTGGTATCATTGCCTTATGAACTCACCAT
1 TGCCATGTCTTGACATGGTCTTACATGATATCATTGCCTTATGAACTCACCAA
* * * ** * *
81134026 TACCATGCCTT-AGCATGGTCTTACATGGA-ATCTTTGCCTTATAGTAGTTTATCAA
1 TGCCATGTCTTGA-CATGGTCTTACAT-GATATCATTGCCTTAT-G-AACTCACCAA
* *
81134081 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGATATCATTGCCTT
81134121 GTAAAACTTA
Statistics
Matches: 75, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
52 1 0.01
53 33 0.44
54 4 0.05
55 36 0.48
56 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.39
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGATATCATTGCCTTATGAACTCACCAA
Found at i:81138158 original size:48 final size:48
Alignment explanation
Indices: 81138087--81138376 Score: 490
Period size: 48 Copynumber: 6.0 Consensus size: 48
81138077 CAAGATAAAT
* * *
81138087 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
81138135 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
81138183 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
81138231 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
81138279 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
81138327 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
81138375 AT
1 AT
81138377 GTGTGTATAT
Statistics
Matches: 229, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 229 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:81138571 original size:37 final size:37
Alignment explanation
Indices: 81138517--81138619 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
81138507 GGAAATATAT
*
81138517 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
81138554 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
81138591 TCCGGGTAAGACCTGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
81138620 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:81154875 original size:53 final size:53
Alignment explanation
Indices: 81154775--81154968 Score: 176
Period size: 53 Copynumber: 3.6 Consensus size: 53
81154765 TTCCTTTTTA
* * ** *
81154775 AACTTACCATTTCCATGCCTTGACATGGTCTTATGTGTTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-GATCCTTGCCTTATAG
* * * *
81154828 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATAGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT-GGATCCTTGCCTTATAG
** * * * *
81154882 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACAT-GATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGA--TCCTTGCCTTATAG
* *
81154937 AACTTACCAATGCCATGCCTTGGCATCGTCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTT
81154969 GCTTGGTATC
Statistics
Matches: 113, Mismatches: 23, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
53 45 0.40
54 28 0.25
55 40 0.35
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGATCCTTGCCTTATAG
Found at i:81154930 original size:55 final size:53
Alignment explanation
Indices: 81154787--81154968 Score: 154
Period size: 55 Copynumber: 3.4 Consensus size: 53
81154777 CTTACCATTT
** *
81154787 CCATGCCTTGACATGGTCTTATGTG-TTATCCTTGCCTTATGAACTCACCATTG
1 CCATGCCTTGACATGGTCTTACATGATT-TCCTTGCCTTATGAACTCACCAATG
* * ** * *
81154840 CCATGCCTTGGCATGGTCTTACATAGGA--TCTTTGCCTTATAGTAGTTTATCAATG
1 CCATGCCTTGACATGGTCTTACAT--GATTTCCTTGCCTTAT-G-AACTCACCAATG
* * * *
81154895 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAATG
1 CCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTAT-GAACTCACCAATG
* *
81154949 CCATGCCTTGGCATCGTCTT
1 CCATGCCTTGACATGGTCTT
81154969 GCTTGGTATC
Statistics
Matches: 102, Mismatches: 20, Indels: 13
0.76 0.15 0.10
Matches are distributed among these distances:
53 34 0.33
54 27 0.26
55 41 0.40
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (53 bp):
CCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTATGAACTCACCAATG
Found at i:81159358 original size:30 final size:30
Alignment explanation
Indices: 81159324--81159384 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
81159314 TCCTTAACTC
81159324 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
81159354 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
81159384 A
1 A
81159385 GGCTCGCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:81177573 original size:40 final size:40
Alignment explanation
Indices: 81177475--81177857 Score: 574
Period size: 40 Copynumber: 9.6 Consensus size: 40
81177465 TCCTCGTTCA
* * * * *
81177475 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
81177514 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81177554 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81177594 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81177634 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81177674 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81177714 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
81177754 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
81177794 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
*
81177834 AAAGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81177858 CAGCATTCAA
Statistics
Matches: 321, Mismatches: 19, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
39 37 0.12
40 276 0.86
41 8 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:81177866 original size:41 final size:41
Alignment explanation
Indices: 81177789--81177866 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
81177779 TTAGTATCTC
* * *
81177789 GCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAACCCGGACACATTCACTTA
81177830 GCACAAA-GCCTTCGGGA-CTTAACCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAACCCGGACA-CATTCA
81177867 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAACCCGGACACATTCACTTA
Found at i:81183144 original size:96 final size:96
Alignment explanation
Indices: 81182960--81183137 Score: 259
Period size: 96 Copynumber: 1.9 Consensus size: 96
81182950 GATGAGTATA
* * * *
81182960 ATTGATCTCTCACCTGTTGTGAAATGTTATTGGTGTAGTCCAAAAGATCATTAGGGTTTTCAACT
1 ATTGAGCTATCACCTGTTGTGAAATGTTATTGGTGTAGTCCAAAAGATCATAAGGGTTTCCAACT
81183025 CTCAATTAAATATCCAAATAGAGAGAATAAG
66 CTCAATTAAATATCCAAATAGAGAGAATAAG
* * * *
81183056 ATTGAGCTATCACCTTTTGTGCAATGTTATTGGTGTAGTTCAAAATATCATAAGGGTTTCCAA-T
1 ATTGAGCTATCACCTGTTGTGAAATGTTATTGGTGTAGTCCAAAAGATCATAAGGGTTTCCAACT
*
81183120 GTCCAATTAAATATCCAA
66 CT-CAATTAAATATCCAA
81183138 CAAGAGAAGA
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
95 2 0.03
96 70 0.97
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (96 bp):
ATTGAGCTATCACCTGTTGTGAAATGTTATTGGTGTAGTCCAAAAGATCATAAGGGTTTCCAACT
CTCAATTAAATATCCAAATAGAGAGAATAAG
Found at i:81187691 original size:46 final size:45
Alignment explanation
Indices: 81187624--81187795 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 45
81187614 AACCCGCCCC
* *
81187624 TAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCA
* *
81187670 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCA
* * * * * *
81187718 TCA-CGAACTCGGACTCAACTCAAAGAGTTCAGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCA
81187763 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
81187796 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 57 0.56
47 26 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
Found at i:81187737 original size:93 final size:93
Alignment explanation
Indices: 81187629--81187799 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
81187619 GCCCCTAAGT
* * * *
81187629 GAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAAAGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81187694 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
81187722 GAACTCGGACTCAACTCAAAGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAAAGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81187787 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81187800 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAAAGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:81188250 original size:30 final size:30
Alignment explanation
Indices: 81188216--81188275 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
81188206 ATTTAATACG
81188216 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
81188246 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
81188276 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:81218442 original size:93 final size:93
Alignment explanation
Indices: 81218334--81218504 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
81218324 GCCCCTAAGT
* *
81218334 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
81218399 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
81218427 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
81218492 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81218505 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81218501 original size:46 final size:46
Alignment explanation
Indices: 81218329--81218501 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
81218319 AACCCGCCCC
* * *
81218329 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
81218375 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
81218423 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
81218468 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81218502 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:81222117 original size:39 final size:40
Alignment explanation
Indices: 81222022--81222244 Score: 248
Period size: 39 Copynumber: 5.7 Consensus size: 40
81222012 TTGAATGATG
* *
81222022 TCCGAGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* * *
81222061 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
81222101 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
81222140 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
81222179 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
*
81222220 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81222245 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 90 0.56
40 59 0.36
41 12 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:81222266 original size:79 final size:79
Alignment explanation
Indices: 81222060--81222277 Score: 205
Period size: 79 Copynumber: 2.8 Consensus size: 79
81222050 AAGTGACAAT
* * * ** * *
81222060 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCAT
1 ATCCGGGCTAAG-CCCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCAT
81222123 TTGTGCGAGATACTAA
64 TTGTGCGAGATACTAA
* ** *
81222139 TTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 ATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTT
81222204 GTGCGA-ATTACTATA
66 GTGCGAGA-TACTA-A
* * * *
81222219 AT-CGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
81222278 TACGTGATTT
Statistics
Matches: 119, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
77 1 0.01
78 34 0.29
79 57 0.48
80 27 0.23
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
ATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTT
GTGCGAGATACTAA
Found at i:81226400 original size:15 final size:15
Alignment explanation
Indices: 81226374--81226429 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
81226364 CAAGGAAACC
81226374 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
81226389 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
81226404 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
81226419 GAATAAAGAAA
1 GAATAAAGAAA
81226430 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:81229543 original size:46 final size:46
Alignment explanation
Indices: 81229371--81229543 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
81229361 AACCCGCCCC
* * *
81229371 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * * * *
81229417 TAAATGAACTCGGACTCAGCTCAACGAGTTCAAATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC---GGAC-ATTTGCATCCA
* *
81229465 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
81229510 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81229544 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 2 0.02
46 57 0.55
47 25 0.24
48 2 0.02
49 3 0.03
50 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:81238915 original size:42 final size:43
Alignment explanation
Indices: 81238863--81238985 Score: 124
Period size: 44 Copynumber: 2.9 Consensus size: 43
81238853 TCTGAACTCA
* **
81238863 TTCACCGGCATT-TTGCCTGCTAGGCTTGAAGCCCGATATAAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATAAT
* *
81238905 TTCACTGGCATTATAGCCTGCTAGGCCCGAAGCCCGATAATATT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGAT-ATAAT
* * * * *
81238949 ATTCACCAGC-TTAAAGCTTGCTAGGCTCAAAGCCCGA
1 -TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGA
81238986 ATATCACCAT
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
42 11 0.16
43 22 0.33
44 27 0.40
45 7 0.10
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATAAT
Found at i:81238930 original size:43 final size:42
Alignment explanation
Indices: 81238863--81238943 Score: 117
Period size: 43 Copynumber: 1.9 Consensus size: 42
81238853 TCTGAACTCA
* **
81238863 TTCACCGGCATTTTGCCTGCTAGGCTTGAAGCCCGATATAAT
1 TTCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATAAT
*
81238905 TTCACTGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGGCATT-TAGCCTGCTAGGCCCGAAGCCCGATA
81238944 ATATTATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 11 0.32
43 23 0.68
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.27
Consensus pattern (42 bp):
TTCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATAAT
Found at i:81240409 original size:28 final size:28
Alignment explanation
Indices: 81240378--81240447 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
81240368 GTTGATTTCG
81240378 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
81240406 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
81240434 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
81240448 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:81254001 original size:40 final size:40
Alignment explanation
Indices: 81253951--81254333 Score: 574
Period size: 40 Copynumber: 9.6 Consensus size: 40
81253941 TTGAATGCTG
* * * * *
81253951 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
81253991 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
81254031 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
81254071 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
81254111 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
81254151 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
81254191 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
81254231 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
81254271 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
81254310 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
81254334 TGAACGAGGA
Statistics
Matches: 322, Mismatches: 18, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
39 35 0.11
40 279 0.87
41 8 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:81260962 original size:27 final size:27
Alignment explanation
Indices: 81260932--81260992 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 27
81260922 GGATGAAGTT
81260932 TAATTT-ACGATCCTAGGGGCAAAAATG
1 TAATTTGACGAT-CTAGGGGCAAAAATG
* * *
81260959 TAATTTTGACGGTTTAGGGGCAAAATTG
1 TAA-TTTGACGATCTAGGGGCAAAAATG
81260987 TAATTT
1 TAATTT
81260993 TGTAAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 6 0.21
28 19 0.66
29 4 0.14
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.34
Consensus pattern (27 bp):
TAATTTGACGATCTAGGGGCAAAAATG
Found at i:81261259 original size:21 final size:20
Alignment explanation
Indices: 81261235--81261273 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
81261225 GTGTAAATGT
81261235 AGTAACATAATTGTTATTTTA
1 AGTAACATAA-TGTTATTTTA
**
81261256 AGTAATTTAATGTTATTT
1 AGTAACATAATGTTATTT
81261274 ATATGATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.51
Consensus pattern (20 bp):
AGTAACATAATGTTATTTTA
Found at i:81263855 original size:9 final size:9
Alignment explanation
Indices: 81263834--81263862 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
81263824 GCGGAAAATG
81263834 TTATTTA-T
1 TTATTTATT
81263842 TTATTTATT
1 TTATTTATT
81263851 TTATTTATT
1 TTATTTATT
81263860 TTA
1 TTA
81263863 GGGTTAGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 7 0.35
9 13 0.65
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
TTATTTATT
Found at i:81269471 original size:5 final size:5
Alignment explanation
Indices: 81269461--81269486 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
81269451 ATTGCTATAT
81269461 AAATA AAATA AAATA AAATA AAATA A
1 AAATA AAATA AAATA AAATA AAATA A
81269487 TTCAACCAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:81271048 original size:55 final size:55
Alignment explanation
Indices: 81270989--81271097 Score: 141
Period size: 55 Copynumber: 2.0 Consensus size: 55
81270979 GCTGCCAAAT
* *
81270989 ACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCACCAGA
1 ACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCACCAGA
* * *
81271044 ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCACCAG
1 ACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCACCAG
81271098 GACGCTTCCT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
54 1 0.02
55 29 0.62
56 17 0.36
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (55 bp):
ACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCACCAGA
Found at i:81271060 original size:27 final size:27
Alignment explanation
Indices: 81271008--81271097 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
81270998 GTGACAGAGT
81271008 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
81271037 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
81271064 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
81271092 CACCAG
1 CACCAG
81271098 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:81271251 original size:28 final size:28
Alignment explanation
Indices: 81271202--81271270 Score: 102
Period size: 28 Copynumber: 2.5 Consensus size: 28
81271192 AAAAATTAAC
*
81271202 CCTAGGGGTATAAAGGTCATTTTGCATA
1 CCTAGGGGTATAAAGGTAATTTTGCATA
* *
81271230 CCTAGGGGTATTATGGTAATTTTGCATA
1 CCTAGGGGTATAAAGGTAATTTTGCATA
*
81271258 CATAGGGGTATAA
1 CCTAGGGGTATAA
81271271 TAGTACATCT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
CCTAGGGGTATAAAGGTAATTTTGCATA
Found at i:81272860 original size:29 final size:29
Alignment explanation
Indices: 81272818--81272918 Score: 141
Period size: 29 Copynumber: 3.5 Consensus size: 29
81272808 CATGAAATTG
81272818 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
81272847 GCACTAAGTGTGCGGGTTCAAGTTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
* * * *
81272876 GCACTAAGTGTCCGAGTTC-GATTATATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
81272904 ACACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
81272919 ACTTACTATA
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 18 0.29
29 45 0.71
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGGGTTCAAATTGTATA
Found at i:81277514 original size:18 final size:18
Alignment explanation
Indices: 81277491--81277530 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
81277481 CAATTCAGCC
*
81277491 AACAGACTTCCATCATCA
1 AACAGACTTACATCATCA
*
81277509 AACAGACTTAGATCATCA
1 AACAGACTTACATCATCA
81277527 AACA
1 AACA
81277531 TTGCTCCCCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.28, G:0.07, T:0.20
Consensus pattern (18 bp):
AACAGACTTACATCATCA
Found at i:81281855 original size:27 final size:28
Alignment explanation
Indices: 81281803--81281872 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
81281793 GTGACAGAGT
* *
81281803 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATATTATGTGGCAGGGC
81281832 CACCAGAACAGATA-TATGTGGCAGGGC
1 CACCAGAACAGATATTATGTGGCAGGGC
81281859 CACCAGAACAGATA
1 CACCAGAACAGATA
81281873 ATTCGTGGCA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 25 0.64
28 7 0.18
29 7 0.18
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (28 bp):
CACCAGAACAGATATTATGTGGCAGGGC
Found at i:81281889 original size:28 final size:26
Alignment explanation
Indices: 81281803--81281889 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 26
81281793 GTGACAGAGT
*
81281803 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-ATTGTGGCA-TGC
*
81281832 CACCAGAACAGAT-ATATGTGGCAGGGC
1 CACCAGAACAGATAAT-TGTGGCA-TGC
81281859 CACCAGAACAGATAATTCGTGGCATAGC
1 CACCAGAACAGATAATT-GTGGCAT-GC
81281887 CAC
1 CAC
81281890 TAGGACGCTT
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
26 1 0.02
27 24 0.47
28 19 0.37
29 7 0.14
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.20
Consensus pattern (26 bp):
CACCAGAACAGATAATTGTGGCATGC
Found at i:81282046 original size:28 final size:28
Alignment explanation
Indices: 81281999--81282065 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
81281989 AAAATAACCC
*
81281999 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
* *
81282027 TAGGGGTATTATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
81282055 TAGGGGTATAA
1 TAGGGGTATAA
81282066 TAGTACATCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:81285397 original size:17 final size:16
Alignment explanation
Indices: 81285365--81285398 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
81285355 TAACAACTAT
*
81285365 TTATTTTTAAATATAA
1 TTATTTTTAAAAATAA
81285381 TTATTTTTAATAAATAA
1 TTATTTTTAA-AAATAA
81285398 T
1 T
81285399 AATATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTATTTTTAAAAATAA
Found at i:81286022 original size:20 final size:20
Alignment explanation
Indices: 81285999--81286046 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
81285989 TTATTAATAA
81285999 TTATAAGAAGTTA-TAAAAAC
1 TTATAA-AAGTTACTAAAAAC
* *
81286019 TTATCAAATTTACTAAAAAC
1 TTATAAAAGTTACTAAAAAC
*
81286039 TAATAAAA
1 TTATAAAA
81286047 ATCACATTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.56, C:0.08, G:0.04, T:0.31
Consensus pattern (20 bp):
TTATAAAAGTTACTAAAAAC
Found at i:81291204 original size:23 final size:24
Alignment explanation
Indices: 81291170--81291214 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
81291160 TGCACGTAAA
*
81291170 CTAAAAAATAT-ATTTTTTTAATT
1 CTAAAAAATATAATATTTTTAATT
*
81291193 CTAAAAATTATAATATTTTTAA
1 CTAAAAAATATAATATTTTTAA
81291215 AATTTTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (24 bp):
CTAAAAAATATAATATTTTTAATT
Found at i:81293914 original size:32 final size:31
Alignment explanation
Indices: 81293843--81293914 Score: 76
Period size: 31 Copynumber: 2.3 Consensus size: 31
81293833 AATACATAAA
*
81293843 ATATTTTAAAATTTTAAACATAATAATAAATT
1 ATATTTTAAAATTTTAAACA-AATAATAAATG
* *
81293875 A-AATTTAAATATTTTAATAC-AATGATAAATG
1 ATATTTTAAA-ATTTTAA-ACAAATAATAAATG
81293906 ATATTTTAA
1 ATATTTTAA
81293915 TTTTTTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
31 17 0.52
32 14 0.42
33 2 0.06
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (31 bp):
ATATTTTAAAATTTTAAACAAATAATAAATG
Found at i:81305930 original size:28 final size:29
Alignment explanation
Indices: 81305898--81305952 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
81305888 CACGGGCGAC
*
81305898 GACACGGGCTTGT-CTAGGCCGTGTGAGA
1 GACACGGGCATGTGCTAGGCCGTGTGAGA
* *
81305926 GACACGGGCATGTGCTTGGCTGTGTGA
1 GACACGGGCATGTGCTAGGCCGTGTGA
81305953 AAACCTCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.16, C:0.20, G:0.40, T:0.24
Consensus pattern (29 bp):
GACACGGGCATGTGCTAGGCCGTGTGAGA
Found at i:81311265 original size:39 final size:39
Alignment explanation
Indices: 81311154--81311283 Score: 170
Period size: 40 Copynumber: 3.3 Consensus size: 39
81311144 GGACTAAGAT
* * *
81311154 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
**
81311194 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * *
81311234 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
81311273 CCGAAGGCATT
1 CCGAAGGCATT
81311284 TGAACGAGGA
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 37 0.47
40 42 0.53
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:81311303 original size:79 final size:79
Alignment explanation
Indices: 81311154--81311318 Score: 179
Period size: 79 Copynumber: 2.1 Consensus size: 79
81311144 GGACTAAGAT
* * * ** ** *
81311154 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
**
81311219 AATCCGGGTTATGTC
66 AATCC-GGTTAAATC
* * * *
81311234 CCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
81311298 TATCCGGTTAAATC
66 AATCCGGTTAAATC
81311312 CCGAAGG
1 CCGAAGG
81311319 TACGTGATTT
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
78 14 0.20
79 49 0.70
80 7 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGTTAAATC
Found at i:81328750 original size:40 final size:40
Alignment explanation
Indices: 81328699--81329049 Score: 515
Period size: 40 Copynumber: 8.8 Consensus size: 40
81328689 ATTTGAATTT
* * * * *
81328699 TATCTGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
81328739 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
81328779 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
81328819 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* *
81328859 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTAATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
81328899 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* * *
81328939 TATCCGGGCTAAGACCCAAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* *
81328979 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
** * *
81329019 TGCCCGGGCTAAGACCCGAAAGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
81329050 TTGTGGTAAT
Statistics
Matches: 288, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 285 0.99
41 3 0.01
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
Found at i:81336886 original size:30 final size:30
Alignment explanation
Indices: 81336852--81336912 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
81336842 TCCTTAACTC
81336852 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
81336882 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
81336912 A
1 A
81336913 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:81338426 original size:33 final size:33
Alignment explanation
Indices: 81338389--81338477 Score: 160
Period size: 33 Copynumber: 2.7 Consensus size: 33
81338379 AGTCTAATCT
*
81338389 GGATTACTAGTCCAGGCTAAATCCAATCAACTA
1 GGATTACCAGTCCAGGCTAAATCCAATCAACTA
*
81338422 GGATTACCAGTCCAGGCTAAATCCAGTCAACTA
1 GGATTACCAGTCCAGGCTAAATCCAATCAACTA
81338455 GGATTACCAGTCCAGGCTAAATC
1 GGATTACCAGTCCAGGCTAAATC
81338478 TTAATTGAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 54 1.00
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (33 bp):
GGATTACCAGTCCAGGCTAAATCCAATCAACTA
Found at i:81342402 original size:40 final size:40
Alignment explanation
Indices: 81342357--81342581 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
81342347 CTTGTGCAAG
* * *
81342357 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* **
81342397 GCCTTCGGGACTTAGCCCGGATATAGTTGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
81342437 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
81342477 GCCTTCGGGTCTTAGCCCAGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
81342517 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* *
81342558 GCCTTTGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
81342582 CATTCGAATA
Statistics
Matches: 154, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 125 0.81
41 28 0.18
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:81348372 original size:28 final size:28
Alignment explanation
Indices: 81348332--81348483 Score: 270
Period size: 28 Copynumber: 5.5 Consensus size: 28
81348322 AGTGCAGTGA
81348332 CACTAAGTGTGCGAGTTTGATTATATAG
1 CACTAAGTGTGCGAGTTTGATTATATAG
*
81348360 CACTAAGTGTGCGAGTTTGATTATGTAG
1 CACTAAGTGTGCGAGTTTGATTATATAG
*
81348388 CACTAAGTGTGCGAGTTTGATTATGTAG
1 CACTAAGTGTGCGAGTTTGATTATATAG
81348416 CACTAAGTGTGCGAGTTTGATTATATAG
1 CACTAAGTGTGCGAGTTTGATTATATAG
81348444 CACTAAGTGTGCGAG-TTGATTATATAG
1 CACTAAGTGTGCGAGTTTGATTATATAG
*
81348471 CACTGAGTGTGCG
1 CACTAAGTGTGCG
81348484 GACTTAATAT
Statistics
Matches: 121, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
27 24 0.20
28 97 0.80
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTGATTATATAG
Found at i:81356556 original size:28 final size:28
Alignment explanation
Indices: 81356491--81356697 Score: 319
Period size: 28 Copynumber: 7.4 Consensus size: 28
81356481 GAGATTGGCG
* *
81356491 CTAAGTGTGCGAGTTTAAAT-TGTACAGCA
1 CTAAGTGTGCGAGTTTGATTATGT--AGCA
81356520 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
81356548 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
81356576 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
81356604 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
* *
81356632 CTAAGTGTACGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
81356660 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
81356687 CTGAGTGTGCG
1 CTAAGTGTGCG
81356698 GACTTAATAT
Statistics
Matches: 169, Mismatches: 8, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
27 24 0.14
28 124 0.73
29 18 0.11
30 3 0.02
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:81373124 original size:21 final size:21
Alignment explanation
Indices: 81373094--81373145 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
81373084 AGGGTCACAA
* * *
81373094 GCCCGAGTGGTTTTGGGACAT
1 GCCCGTGTGGCTTTGGGACAC
81373115 GCCCGTGTGGCTTTGGGACAC
1 GCCCGTGTGGCTTTGGGACAC
*
81373136 GTCCGTGTGG
1 GCCCGTGTGG
81373146 GTAGGCCTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.10, C:0.23, G:0.40, T:0.27
Consensus pattern (21 bp):
GCCCGTGTGGCTTTGGGACAC
Found at i:81374407 original size:41 final size:41
Alignment explanation
Indices: 81374295--81374412 Score: 123
Period size: 41 Copynumber: 2.8 Consensus size: 41
81374285 CACACGGTAC
* *
81374295 CATACCAATGC-CATATCCCAGATATGGTCTTACATGTAATCT
1 CATATCAATGCAC-TATCCCAGATATGGTCTTACA-GAAATCT
* * * * *
81374337 CGTATCGATGCCAATAGCCCAGCTATGGTCTTACA-AAAGTCT
1 CATATCAATG-CACTATCCCAGATATGGTCTTACAGAAA-TCT
81374379 CATATCAATGCACTATCCCAGATATGGTCTTACA
1 CATATCAATGCACTATCCCAGATATGGTCTTACA
81374413 CGTAGTCTCA
Statistics
Matches: 61, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
41 23 0.38
42 18 0.30
43 20 0.33
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (41 bp):
CATATCAATGCACTATCCCAGATATGGTCTTACAGAAATCT
Found at i:81377980 original size:45 final size:44
Alignment explanation
Indices: 81377833--81378002 Score: 166
Period size: 44 Copynumber: 3.8 Consensus size: 44
81377823 AGCTCGTACA
* * ** * *
81377833 ATGCCAACGTCCTAGACATGGTCTGACGTGTAATCA-AATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCACTATATCG
*
81377876 ATGCC-ACTGTCCCAGACATGGTCTTACACATAAATCACTA-ATCG
1 ATGCCAAC-GTCCCAGACATGGTCTTACAC-GAAATCACTATATCG
** **
81377920 ATGCCAATATCCCAGACGCGGTCTTACACGAAATCACGTATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAC-TATATCG
* *
81377965 CTGCCAACGTCCCAGACTTGGTCTTACACGAAAATCAC
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAATCAC
81378003 ATAAATCACT
Statistics
Matches: 103, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
42 2 0.02
43 29 0.28
44 34 0.33
45 31 0.30
46 7 0.07
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCACTATATCG
Found at i:81378273 original size:38 final size:38
Alignment explanation
Indices: 81378188--81378451 Score: 402
Period size: 38 Copynumber: 6.9 Consensus size: 38
81378178 GAATCCAGTC
* * * *
81378188 ACCAGCACAAAACCTGCGGGACTTTAAGCTCGAATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* *
81378228 ACTAGCACGAAGCCTGCGGGATTTAACTCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* *
81378266 ACCAGCACGAAGCCTGCGTGATTTAACCCCGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
81378304 ACTAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
81378342 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAGT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* *
81378380 ACCAGTACGAAGCCTGCGGGATTTAACCCGGGTATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
81378418 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATA
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATA
81378452 CACATCAAAT
Statistics
Matches: 206, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
38 183 0.89
39 5 0.02
40 18 0.09
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.20
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:81382620 original size:44 final size:45
Alignment explanation
Indices: 81382570--81382695 Score: 139
Period size: 45 Copynumber: 2.8 Consensus size: 45
81382560 GATGCCACTG
*
81382570 TCCCAGACATGGTCTTACACGTAAATCAC-TA-ATCAATGCAAATA
1 TCCCAGACATGGTCTTACACG-AAATCACGTATATCAATGCAAACA
** ** * *
81382614 TCCCAGACGCGGTCTTACACGAAATCACGTATATCGCTGCCAACG
1 TCCCAGACATGGTCTTACACGAAATCACGTATATCAATGCAAACA
* *
81382659 TCCCAGACATGGTCTTACACAAAAATCACATATATCA
1 TCCCAGACATGGTCTTACAC-GAAATCACGTATATCA
81382696 CCCTTTGATA
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
43 7 0.10
44 21 0.31
45 26 0.39
46 13 0.19
ACGTcount: A:0.35, C:0.29, G:0.13, T:0.23
Consensus pattern (45 bp):
TCCCAGACATGGTCTTACACGAAATCACGTATATCAATGCAAACA
Found at i:81382973 original size:38 final size:38
Alignment explanation
Indices: 81382873--81383097 Score: 301
Period size: 38 Copynumber: 5.9 Consensus size: 38
81382863 GAATCCAGTC
* * * *
81382873 ACCAGCACAAAACCTGCGGGACTTTAAGCTCGAATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
81382913 ACCAGCAC-ATAGCCTGC-GGATTTAACCCGGATATAAT
1 ACCAGCACGA-AGCCTGCGGGATTTAACCCGGATATAAT
* * *
81382950 ACCAGCACGAAACCTGCGAGATTTAACCCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
81382988 ACCAGCACGAAGCCTGCGGGATTTAACCTGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
** *
81383026 ACCAGCACGAAGCCTGCTAGATTTAACCTGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
81383064 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATA
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATA
81383098 CACATCAAAT
Statistics
Matches: 166, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
37 24 0.14
38 124 0.75
39 4 0.02
40 14 0.08
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.20
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:81383062 original size:114 final size:115
Alignment explanation
Indices: 81382873--81383097 Score: 339
Period size: 114 Copynumber: 2.0 Consensus size: 115
81382863 GAATCCAGTC
* *
81382873 ACCAGCACAAAACCTGCGGGACTTTAAGCTCGAATATAATACCAGCACATAGCCTGCGGATTTAA
1 ACCAGCACAAAACCTGCGGGACTTTAACCTCGAATATAATACCAGCACATAGCCTGCAGATTTAA
81382938 CCCGGATATAATACCAGCACGAAACCTGCGAGATTTAACCCAGATATAAT
66 CCCGGATATAATACCAGCACGAAACCTGCGAGATTTAACCCAGATATAAT
* * *
81382988 ACCAGCACGAAGCCTGCGGGA-TTTAACCT-GGATATAATACCAGCACGA-AGCCTGCTAGATTT
1 ACCAGCACAAAACCTGCGGGACTTTAACCTCGAATATAATACCAGCAC-ATAGCCTGC-AGATTT
* * *
81383050 AACCTGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAGATA
64 AACCCGGATATAATACCAGCACGAAACCTGCGAGATTTAACCCAGATA
81383098 CACATCAAAT
Statistics
Matches: 100, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
113 23 0.23
114 58 0.58
115 19 0.19
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.20
Consensus pattern (115 bp):
ACCAGCACAAAACCTGCGGGACTTTAACCTCGAATATAATACCAGCACATAGCCTGCAGATTTAA
CCCGGATATAATACCAGCACGAAACCTGCGAGATTTAACCCAGATATAAT
Found at i:81405958 original size:29 final size:29
Alignment explanation
Indices: 81405913--81405971 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
81405903 TTGGCTTTGT
* * *
81405913 AAGTGTTAGCGTGAGCAAGGGTACGTACA
1 AAGTGTTAGCGTAAGCAAGGGGAAGTACA
81405942 AAGTGTTAGCGTAAGCAAGGGGAAGTACA
1 AAGTGTTAGCGTAAGCAAGGGGAAGTACA
81405971 A
1 A
81405972 CAAAGGGCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.36, C:0.12, G:0.34, T:0.19
Consensus pattern (29 bp):
AAGTGTTAGCGTAAGCAAGGGGAAGTACA
Found at i:81407014 original size:60 final size:60
Alignment explanation
Indices: 81406912--81407050 Score: 149
Period size: 60 Copynumber: 2.3 Consensus size: 60
81406902 CCAACTATGT
* * *
81406912 TAATATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTACAGCCTAGATTGATAC
1 TAATATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACAGCCCAGATTAATAC
* * ** *
81406972 TGATATGGGCTAGGCCCAATATA-CTCTGA-TACTGTAA-GGGGCTATGGCCCAGATTAATAT
1 TAATATGGGCTAGGCCCAATATATCTC-GACT--TGTAATAGGGCTACAGCCCAGATTAATAC
81407032 TAATATGGGCTAAGGCCCA
1 TAATATGGGCT-AGGCCCA
81407051 GTTAACACTG
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
59 4 0.06
60 50 0.76
61 12 0.18
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (60 bp):
TAATATGGGCTAGGCCCAATATATCTCGACTTGTAATAGGGCTACAGCCCAGATTAATAC
Found at i:81410275 original size:29 final size:28
Alignment explanation
Indices: 81410216--81410286 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
81410206 AAAATAAAAT
* * *
81410216 AAAAAAGAAAAAGAAAGGAAGGAGAATG
1 AAAAAAGAAAAAGAAAGAAAGCAGAAAG
* *
81410244 AAAAAATAAAAAGAAAGAAATCAGCAAAG
1 AAAAAAGAAAAAGAAAGAAAGCAG-AAAG
*
81410273 AAAAAAGAAGAAGA
1 AAAAAAGAAAAAGA
81410287 GAAACATTCT
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
28 20 0.57
29 15 0.43
ACGTcount: A:0.72, C:0.03, G:0.21, T:0.04
Consensus pattern (28 bp):
AAAAAAGAAAAAGAAAGAAAGCAGAAAG
Found at i:81419650 original size:28 final size:29
Alignment explanation
Indices: 81419609--81419664 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
81419599 CCAGGGTTTT
* *
81419609 GGACACGGGCGTGT-CTAGGCCGTGTGAG
1 GGACACGGGAGTGTGCTAGGCCATGTGAG
*
81419637 GGACACGGGAGTGTGCTTGGCCATGTGA
1 GGACACGGGAGTGTGCTAGGCCATGTGA
81419665 AAACCCCTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.16, C:0.20, G:0.45, T:0.20
Consensus pattern (29 bp):
GGACACGGGAGTGTGCTAGGCCATGTGAG
Found at i:81422770 original size:25 final size:25
Alignment explanation
Indices: 81422736--81422787 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
81422726 TGTGTCTCAG
81422736 CCGTGCGACTTCATTAGGACCATGA
1 CCGTGCGACTTCATTAGGACCATGA
81422761 CCGTGCGACTTCATTAGGACCATGA
1 CCGTGCGACTTCATTAGGACCATGA
81422786 CC
1 CC
81422788 ATTTAGACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (25 bp):
CCGTGCGACTTCATTAGGACCATGA
Found at i:81423698 original size:13 final size:13
Alignment explanation
Indices: 81423680--81423718 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
81423670 ATATTATAAT
*
81423680 TATTTTGTGTTAA
1 TATTTTATGTTAA
*
81423693 TATTTTATGCTAA
1 TATTTTATGTTAA
81423706 TAATTTTATGTTA
1 T-ATTTTATGTTA
81423719 CAAAATGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.59
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:81430151 original size:27 final size:26
Alignment explanation
Indices: 81430103--81430162 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
81430093 GCGAGGCTGC
*
81430103 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
81430130 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
81430156 CAGATAT
1 CAGATAT
81430163 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:81430175 original size:33 final size:32
Alignment explanation
Indices: 81430124--81430187 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
81430114 ACGAAGTCAC
* *
81430124 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
81430156 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
81430188 TTGTAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:81442238 original size:49 final size:49
Alignment explanation
Indices: 81442162--81442390 Score: 262
Period size: 49 Copynumber: 4.6 Consensus size: 49
81442152 AGGCTATCTA
* * *
81442162 GTACGCATAGTAGCTTGCGCTTAGTACTACACATGCGACCAATTATTC-G
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTA-TCGG
* * * ** *
81442211 GTACACATAATAGCCTGCACTTAGTACTGCACATGTGACCTAACCATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCGG
* * * * *
81442261 ATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCGG
**
81442312 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCA
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGG
*
81442361 GTACACGTAGTAGCCTGCACTTAGTACTAC
1 GTACACATAGTAGCCTGCACTTAGTACTAC
81442391 TCACGTGACC
Statistics
Matches: 151, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
49 70 0.46
50 42 0.28
51 39 0.26
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGG
Found at i:81442396 original size:100 final size:101
Alignment explanation
Indices: 81442169--81442398 Score: 299
Period size: 100 Copynumber: 2.3 Consensus size: 101
81442159 CTAGTACGCA
* * * * *
81442169 TAGTAGCTTGCGCTTAGTACTACACATGCGA-CCAA-TTATTC-GGTACACATAATAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTA-TCGGGTACACATAATAGCCTGCAC
* * *
81442231 TTAGTACTGCACATGTGACCTAACCATCTGATACACG
65 TTAGTACTACACATGCGACCTAACCATCAGATACACG
*
81442268 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACACATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACACATAATAGCCTGCACT
**
81442333 TAGTACTACACATGCGACC-AATTATCCAG-TACACG
66 TAGTACTACACATGCGACCTAACCAT-CAGATACACG
*
81442368 TAGTAGCCTGCACTTAGTACTACTCACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
81442399 CCTCACAATA
Statistics
Matches: 115, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
99 27 0.23
100 45 0.39
101 43 0.37
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACACATAATAGCCTGCACT
TAGTACTACACATGCGACCTAACCATCAGATACACG
Found at i:81449281 original size:63 final size:63
Alignment explanation
Indices: 81449167--81449289 Score: 158
Period size: 63 Copynumber: 2.0 Consensus size: 63
81449157 GTTGGGCTCC
* * *
81449167 AATCTTAACTCCATGAGTTATACGACCTGGACATACGCCTATGTGTCTCACCTGTGTGACTCA
1 AATCTTAACTCCATGAGTTATAAGACCTGGACACACGCCTATGTATCTCACCTGTGTGACTCA
* * * * *
81449230 AATCTTAACT-CATTGAGTTATAAGGCCTGGACACACGCTTGTGTATTTCACCTTTGTGAC
1 AATCTTAACTCCA-TGAGTTATAAGACCTGGACACACGCCTATGTATCTCACCTGTGTGAC
81449290 CCCTGCACCT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
62 2 0.04
63 49 0.96
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (63 bp):
AATCTTAACTCCATGAGTTATAAGACCTGGACACACGCCTATGTATCTCACCTGTGTGACTCA
Found at i:81449992 original size:18 final size:18
Alignment explanation
Indices: 81449969--81450007 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
81449959 AGAGAACAAG
* *
81449969 AAATAAGGAAATAAAATA
1 AAATAAGGAAAAAAAACA
*
81449987 AAATAAGTAAAAAAAACA
1 AAATAAGGAAAAAAAACA
81450005 AAA
1 AAA
81450008 ACCTTTAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.77, C:0.03, G:0.08, T:0.13
Consensus pattern (18 bp):
AAATAAGGAAAAAAAACA
Found at i:81451230 original size:29 final size:29
Alignment explanation
Indices: 81451173--81451229 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
81451163 TAGTCTAATA
* *
81451173 TGCAATTCTATACATGTATTTTGATTTTG
1 TGCAATTCTATACATGAAATTTGATTTTG
*
81451202 TGCAATTTTATACATGAAAATTTGATTT
1 TGCAATTCTATACATG-AAATTTGATTT
81451230 GATCCAATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 15 0.62
30 9 0.38
ACGTcount: A:0.30, C:0.09, G:0.12, T:0.49
Consensus pattern (29 bp):
TGCAATTCTATACATGAAATTTGATTTTG
Found at i:81451631 original size:17 final size:18
Alignment explanation
Indices: 81451609--81451643 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
81451599 ATAGATGTAA
81451609 TTTAAAT-TCTAATTATT
1 TTTAAATGTCTAATTATT
*
81451626 TTTAAATGTGTAATTATT
1 TTTAAATGTCTAATTATT
81451644 ACAACTTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.57
Consensus pattern (18 bp):
TTTAAATGTCTAATTATT
Found at i:81461553 original size:16 final size:16
Alignment explanation
Indices: 81461533--81461603 Score: 108
Period size: 16 Copynumber: 4.4 Consensus size: 16
81461523 GTTTGGTTCA
*
81461533 CTGTAATGGAATAG-G
1 CTGTAATTGAATAGAG
81461548 ACTGTAATTGAATAGAG
1 -CTGTAATTGAATAGAG
*
81461565 CTGTATTTGAATAGAG
1 CTGTAATTGAATAGAG
81461581 CTGTAATTGAATAGAG
1 CTGTAATTGAATAGAG
81461597 CTGTAAT
1 CTGTAAT
81461604 AAGTAATTCA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
16 50 0.98
17 1 0.02
ACGTcount: A:0.35, C:0.07, G:0.25, T:0.32
Consensus pattern (16 bp):
CTGTAATTGAATAGAG
Found at i:81461678 original size:44 final size:46
Alignment explanation
Indices: 81461589--81461678 Score: 121
Period size: 44 Copynumber: 2.0 Consensus size: 46
81461579 AGCTGTAATT
* *
81461589 GAATAGAGCTGTAATAAGTAATTCAACTGTTTGGTTGAATGGAATG
1 GAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATAGAATG
***
81461635 GAATAGAACTGTAATAA-T-ATTCTTGTGTTTGGTTGAATAGAATG
1 GAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATAGAATG
81461679 ATGTTGTAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 22 0.56
45 1 0.03
46 16 0.41
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (46 bp):
GAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATAGAATG
Found at i:81462586 original size:65 final size:65
Alignment explanation
Indices: 81462473--81462595 Score: 219
Period size: 65 Copynumber: 1.9 Consensus size: 65
81462463 AAAAAAAATG
81462473 ATCAAAAAATTACCTATTCTGTTCAATAATAATCCTCCTCCAATTTGCAACCGTTAACAAACATA
1 ATCAAAAAATTACCTATTCTGTTCAATAATAATCCTCCTCCAATTTGCAACCGTTAACAAACATA
* * *
81462538 ATCAGAAATTTACCTGTTCTGTTCAATAATAATCCTCCTCCAATTTGCAACCGTTAAC
1 ATCAAAAAATTACCTATTCTGTTCAATAATAATCCTCCTCCAATTTGCAACCGTTAAC
81462596 TATTGGGATT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 55 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.33
Consensus pattern (65 bp):
ATCAAAAAATTACCTATTCTGTTCAATAATAATCCTCCTCCAATTTGCAACCGTTAACAAACATA
Found at i:81468253 original size:16 final size:16
Alignment explanation
Indices: 81468232--81468267 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
81468222 TTAACTTATT
81468232 CTAGCAATAATTCATG
1 CTAGCAATAATTCATG
81468248 CTAGCAATAATTCATG
1 CTAGCAATAATTCATG
81468264 CTAG
1 CTAG
81468268 GGTTCATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (16 bp):
CTAGCAATAATTCATG
Found at i:81469331 original size:47 final size:46
Alignment explanation
Indices: 81469208--81469323 Score: 137
Period size: 45 Copynumber: 2.5 Consensus size: 46
81469198 AGGAATTGAC
* * *
81469208 GGTTAAGGATGCCATGTAAGACCATGTCAAGAAATGGCATTGGTAA
1 GGTTAAGGATCCCATGTAAGACCATGTCAAGAAATGGCATCGGCAA
* * * *
81469254 GG-CAAGGATCCCGTGTAAGACCATGTCAAGACATGGCATCGGCATT
1 GGTTAAGGATCCCATGTAAGACCATGTCAAGAAATGGCATCGGCA-A
81469300 GGTTAAGGA-CTCCATGTAAGACCA
1 GGTTAAGGATC-CCATGTAAGACCA
81469324 AATCAAGATG
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
45 36 0.62
46 5 0.09
47 17 0.29
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.22
Consensus pattern (46 bp):
GGTTAAGGATCCCATGTAAGACCATGTCAAGAAATGGCATCGGCAA
Found at i:81469467 original size:100 final size:100
Alignment explanation
Indices: 81469346--81469683 Score: 376
Period size: 100 Copynumber: 3.3 Consensus size: 100
81469336 GCATTGGCAC
* * *
81469346 TAAGGCAAAGATACCATGTAAGACCATGTTTGGAACATGTCATTTGGTAAGATAAGTATATC-TG
1 TAAGGCAAAGAAACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGAATATCATG
81469410 TAAGACAATGCCAAGGCATGGCATTGATAAGTTCTA
66 TAAGAC-ATGCCAAGGCATGGCATTGATAAGTTCTA
* * *** **
81469446 TAAGGCAAGGAAATCATGTAAGACCATGTCAAG-ACATGGCATTGATGAGTTACTATAAGGAAAA
1 TAAGGCAAAGAAACCATGTAAGACCATGTTTGGAACATGGCATT--TG-G-TAAGATAA-G--AA
* * *
81469510 GATCCCATGTAAGATCATGCCAAGGCATGGCATTAATGAGTTC-A
59 TAT--CATGTAAGA-CATGCCAAGGCATGGCATTGATAAGTTCTA
* * * *
81469554 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGGCAAAGAAACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGAATATCATG
81469619 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
66 TAAGA-CATGCCAAGGCATGGCATTGATAAGTTCTA
* *
81469655 TATGGCAAAGAAATCATGTAAGACCATGT
1 TAAGGCAAAGAAACCATGTAAGACCATGT
81469684 CAAGACATGA
Statistics
Matches: 194, Mismatches: 31, Indels: 25
0.78 0.12 0.10
Matches are distributed among these distances:
99 9 0.05
100 62 0.32
101 27 0.14
102 4 0.02
103 6 0.03
104 2 0.01
105 6 0.03
106 4 0.02
107 2 0.01
108 29 0.15
109 42 0.22
110 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (100 bp):
TAAGGCAAAGAAACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGAATATCATG
TAAGACATGCCAAGGCATGGCATTGATAAGTTCTA
Found at i:81469523 original size:55 final size:54
Alignment explanation
Indices: 81469408--81469803 Score: 371
Period size: 55 Copynumber: 7.5 Consensus size: 54
81469398 TAAGTATATC
* * * * * * *
81469408 TGTAAGACAATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCA
1 TGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGATACCA
* *
81469462 TGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGATCCCA
1 TGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGCAAAGATACCA
* * * * * *
81469517 TGTAAGATCATGCCAAGGCATGGCATTAATGAGTTC-ATAAGACAAGGATACCA
1 TGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGATACCA
*** ** * *
81469570 TGTAAGACCATGTTTGGAACATGGCATT--TG-G-----TAAGATAAGGATATCA
1 TGTAAGACCATGTCAAG-ACATGGCATTGATGAGTTCTATAAGGCAAAGATACCA
* * * * * *
81469617 TGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATATGGCAAAGAAATCA
1 TGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGATACCA
* * *
81469671 TGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAGGCAAAGGTCCCA
1 TGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGCAAAGATACCA
* * *
81469726 TGTAAGACCATGGCAAGACATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCA
1 TGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGATACCA
**
81469779 CATAAGACCATGTCAAGACATGGCA
1 TGTAAGACCATGTCAAGACATGGCA
81469804 CTGGTAAGTT
Statistics
Matches: 277, Mismatches: 54, Indels: 23
0.78 0.15 0.06
Matches are distributed among these distances:
46 9 0.03
47 27 0.10
48 1 0.00
49 1 0.00
51 1 0.00
52 2 0.01
53 61 0.22
54 84 0.30
55 91 0.33
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.23
Consensus pattern (54 bp):
TGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGATACCA
Found at i:81469670 original size:209 final size:208
Alignment explanation
Indices: 81469346--81469791 Score: 730
Period size: 209 Copynumber: 2.1 Consensus size: 208
81469336 GCATTGGCAC
* * *
81469346 TAAGGCAAAGATACCATGTAAGACCATGTTTGGAACATGTCATTTGGTAAGATAAGTATATCTGT
1 TAAGGCAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCTGT
*
81469411 AAGACAATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGTC
66 AAGACAATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAAGAAATCATGTAAGACCATGTC
* * *
81469476 AAGACATGGCATTGATGAGTTACTATAAGGAAAAGATCCCATGTAAGATCATGCCAAGGCATGGC
131 AAGACATGACATTGATGAGTTACTATAAGGAAAAGATCCCATGTAAGACCATGCCAAGACATGGC
81469541 ATTAATGAGTTCA
196 ATTAATGAGTTCA
*
81469554 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGGCAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATC-TG
* *
81469619 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATATGGCAAAGAAATCATGTAAGACCATGT
65 TAAGACAATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAAGAAATCATGTAAGACCATGT
* * *
81469684 CAAGACATGACATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGGCAAGACATGG
130 CAAGACATGACATTGATGAGTTACTATAAGGAAAAGATCCCATGTAAGACCATGCCAAGACATGG
**
81469749 CATTGGTGAGTTCA
195 CATTAATGAGTTCA
**
81469763 TAAGGCAAGGATACCACATAAGACCATGT
1 TAAGGCAAGGATACCATGTAAGACCATGT
81469792 CAAGACATGG
Statistics
Matches: 219, Mismatches: 18, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
208 58 0.26
209 161 0.74
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (208 bp):
TAAGGCAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCTGT
AAGACAATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAAGAAATCATGTAAGACCATGTC
AAGACATGACATTGATGAGTTACTATAAGGAAAAGATCCCATGTAAGACCATGCCAAGACATGGC
ATTAATGAGTTCA
Found at i:81469747 original size:155 final size:155
Alignment explanation
Indices: 81469452--81469752 Score: 374
Period size: 155 Copynumber: 1.9 Consensus size: 155
81469442 TCTATAAGGC
* * **
81469452 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGATCCCA
1 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGAAAAGAAACCA
* * *
81469517 TGTAAGATCATGCCAAGGCATGGCATTAATGAGTTCATAAGACAAGGATACCATGTAAGACCATG
66 TGTAAGACCATGCCAAGACATGACATTAATGAGTTCATAAGACAAGGATACCATGTAAGACCATG
****
81469582 TTTGGAACATGGCATTTGGTAAGAT
131 GCAAGAACATGGCATTTGGTAAGAT
* * * * *
81469607 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATATGGCAAAGAAATCA
1 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGAAAAGAAACCA
* * * *
81469671 TGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAGGCAAAGG-TCCCATGTAAGACC
66 TGTAAGACCATGCCAAGACATGACATTAATGAGTT-C-ATAAGAC-AAGGATACCATGTAAGACC
81469735 ATGGCAAG-ACATGGCATT
128 ATGGCAAGAACATGGCATT
81469753 GGTGAGTTCA
Statistics
Matches: 123, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
154 44 0.36
155 52 0.42
156 23 0.19
157 4 0.03
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (155 bp):
AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGAAAAGAAACCA
TGTAAGACCATGCCAAGACATGACATTAATGAGTTCATAAGACAAGGATACCATGTAAGACCATG
GCAAGAACATGGCATTTGGTAAGAT
Found at i:81469815 original size:53 final size:54
Alignment explanation
Indices: 81469607--81469814 Score: 231
Period size: 53 Copynumber: 3.9 Consensus size: 54
81469597 TTGGTAAGAT
* * * *
81469607 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATATGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * *
81469661 AAAGAAATCATGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * *
81469716 AAAGG-TCCCATGTAAGACCATGGCAAGACATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGC
** * *
81469769 AAGGATACCACATAAGACCATGTCAAGACATGGCACTGGTAAGTTC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTC
81469815 AAAAAGGAAA
Statistics
Matches: 131, Mismatches: 20, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
52 4 0.03
53 42 0.32
54 40 0.31
55 42 0.32
56 3 0.02
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:81469829 original size:108 final size:109
Alignment explanation
Indices: 81469615--81469825 Score: 255
Period size: 108 Copynumber: 2.0 Consensus size: 109
81469605 ATAAGGATAT
* * * **
81469615 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATATGGCAAAGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAAAGAAACCACATAAGACC
* * * * *
81469680 ATGTCAAGACATGACATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATGACACTGATAAGTTACAAAAAGGAAAAGGTCC
* * * * *
81469724 CATGTAAGACCATGGCAAGACATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACATAAGACC
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAAAGAAACCACATAAGACC
* *
81469788 ATGTCAAGACATGGCACTGGTAAGTT-CAAAAAGGAAAA
66 ATGTCAAGACATGACACTGATAAGTTACAAAAAGGAAAA
81469826 AGGTTCCCGA
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
107 9 0.11
108 42 0.49
109 34 0.40
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAAAGAAACCACATAAGACC
ATGTCAAGACATGACACTGATAAGTTACAAAAAGGAAAAGGTCC
Found at i:81477355 original size:42 final size:42
Alignment explanation
Indices: 81477237--81477391 Score: 204
Period size: 43 Copynumber: 3.7 Consensus size: 42
81477227 TACCATACTA
* * *
81477237 ATGCTATATCCCAGATATGGTCTTACATGTAATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * *
81477279 ATGCCAATAACCTAGCTATGGTCTTACACAAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* *
81477322 ATGCCATATCCTAGATATGGTCTTTCACGAAATCTCATAT-G
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
*
81477363 ATGCCATATCCCAGATATGATCTTACACG
1 ATGCCATATCCCAGATATGGTCTTACACG
81477392 TAATTTTAGT
Statistics
Matches: 98, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
41 27 0.28
42 35 0.36
43 36 0.37
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:81477361 original size:85 final size:83
Alignment explanation
Indices: 81477237--81477390 Score: 209
Period size: 85 Copynumber: 1.8 Consensus size: 83
81477227 TACCATACTA
* * * * * *
81477237 ATGCTATATCCCAGATATGGTCTTACATGTAATCTCATATCGATGCCAATAACCTAGCTATGGTC
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAT-GATGCC-ATAACCCAGATATGATC
81477302 TTACACAAAATCTCATATCG
64 TTACACAAAATCTCATATCG
* * *
81477322 ATGCCATATCCTAGATATGGTCTTTCACGAAATCTCATATGATGCCATATCCCAGATATGATCTT
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATGATGCCATAACCCAGATATGATCTT
81477387 ACAC
66 ACAC
81477391 GTAATTTTAG
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
83 19 0.32
84 6 0.10
85 35 0.58
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.32
Consensus pattern (83 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATGATGCCATAACCCAGATATGATCTT
ACACAAAATCTCATATCG
Found at i:81480276 original size:40 final size:39
Alignment explanation
Indices: 81480226--81480450 Score: 159
Period size: 40 Copynumber: 5.6 Consensus size: 39
81480216 TTGAATGCTG
*
81480226 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAGA-T-AATAAA
* *
81480266 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCTAGATATTAAA
1 TCCGGGCTAAG-TCCCGAAGG-CTTTGTGCTAGATAATAAA
* * * * **
81480306 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGATAATAAA
* * * * **
81480346 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGATAATAAA
* * * * *
81480386 TCCGGGTTATGTCCCGAAGGCATTGTG-TGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCT-AGATAATAAA
* *
81480425 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGC-TTTG
81480451 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
39 33 0.21
40 114 0.71
41 12 0.08
42 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAGATAATAAA
Done.