Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 241 of 373
Found at i:81874100 original size:25 final size:25
Alignment explanation
Indices: 81874072--81874123 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
81874062 TTTGGCTTGA
**
81874072 CATTTACTAAGCAATATCGGATATT
1 CATTTACTAAGCAATATCAAATATT
* *
81874097 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGCAATATCAAATATT
81874122 CA
1 CA
81874124 AATTATTCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (25 bp):
CATTTACTAAGCAATATCAAATATT
Found at i:81879350 original size:93 final size:93
Alignment explanation
Indices: 81879191--81879363 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
81879181 CGCCGATAAG
* *
81879191 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81879256 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
81879284 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81879349 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
81879364 CAAATATCCT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:81879359 original size:46 final size:46
Alignment explanation
Indices: 81879186--81879359 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
81879176 TAACCCGCCG
* * *
81879186 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCC
1 ATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCC
* * * *
81879232 ATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C
1 ATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCC
*
81879281 -TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCC
1 ATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCC
*
81879325 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 ATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
81879360 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
ATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCC
Found at i:81879378 original size:46 final size:47
Alignment explanation
Indices: 81879235--81879378 Score: 140
Period size: 46 Copynumber: 3.1 Consensus size: 47
81879225 CGCATCCATG
* * *
81879235 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATC--CTA
* *
81879283 A-CGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATT--ATCC-TA
*
81879328 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT-
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATCCTA
81879374 AGTGA
1 AGTGA
81879379 CATGTCACTT
Statistics
Matches: 80, Mismatches: 7, Indels: 20
0.75 0.07 0.19
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 3 0.04
46 35 0.44
47 30 0.38
48 5 0.06
50 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (47 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATCCTA
Found at i:81890678 original size:38 final size:38
Alignment explanation
Indices: 81890636--81890712 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
81890626 TCAAATTTTT
* *
81890636 CGAACGATAGTTCCATCAAATTAGCCAAAAACACAACC
1 CGAACAATAGCTCCATCAAATTAGCCAAAAACACAACC
* *
81890674 CGAACAATAGCTCCGTCAAATTAGCCAGAAACACAACC
1 CGAACAATAGCTCCATCAAATTAGCCAAAAACACAACC
81890712 C
1 C
81890713 ATTGTACATC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.43, C:0.31, G:0.12, T:0.14
Consensus pattern (38 bp):
CGAACAATAGCTCCATCAAATTAGCCAAAAACACAACC
Found at i:81894288 original size:16 final size:15
Alignment explanation
Indices: 81894262--81894291 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
81894252 TTATTTTTCA
81894262 AATAAAACAAATAAC
1 AATAAAACAAATAAC
81894277 AATAATAACAAATAA
1 AATAA-AACAAATAA
81894292 AATCTAATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.73, C:0.10, G:0.00, T:0.17
Consensus pattern (15 bp):
AATAAAACAAATAAC
Found at i:81901118 original size:6 final size:6
Alignment explanation
Indices: 81901100--81901139 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
81901090 TAAAGAAGAT
* *
81901100 AAATAA AGATAA AACTAA AAATAA AAATAAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAAT-AA AAATAA AAA
81901140 GTCTTTAAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.80, C:0.03, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:81903233 original size:18 final size:18
Alignment explanation
Indices: 81903191--81903233 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
81903181 GCCCATTCCG
*
81903191 AAGTATATATATATACAT
1 AAGTATGTATATATACAT
81903209 ATA-TATGTATATATACAT
1 A-AGTATGTATATATACAT
81903227 AAGTATG
1 AAGTATG
81903234 CCCATTCGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 1 0.05
18 20 0.91
19 1 0.05
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (18 bp):
AAGTATGTATATATACAT
Found at i:81903739 original size:28 final size:28
Alignment explanation
Indices: 81903701--81903854 Score: 247
Period size: 28 Copynumber: 5.5 Consensus size: 28
81903691 TAAATTGTAC
81903701 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
81903729 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
81903757 AGCACTAAGTGTGCGAACTTGATTATGT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
* * *
81903785 AGCACTAACTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
81903813 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATGT
*
81903840 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81903855 GACTTAATAT
Statistics
Matches: 119, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
27 24 0.20
28 95 0.80
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTTGATTATGT
Found at i:81907187 original size:18 final size:18
Alignment explanation
Indices: 81907164--81907209 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
81907154 TGGCGTGGTT
81907164 TTGGTTTATCGTGTGTCA
1 TTGGTTTATCGTGTGTCA
*
81907182 TTGGTTTATCGTGTGTCC
1 TTGGTTTATCGTGTGTCA
81907200 TTGGTTTATC
1 TTGGTTTATC
81907210 ATGCATCCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.09, C:0.13, G:0.26, T:0.52
Consensus pattern (18 bp):
TTGGTTTATCGTGTGTCA
Found at i:81907218 original size:18 final size:18
Alignment explanation
Indices: 81907182--81907226 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
81907172 TCGTGTGTCA
* **
81907182 TTGGTTTATCGTGTGTCC
1 TTGGTTTATCATGCATCC
81907200 TTGGTTTATCATGCATCC
1 TTGGTTTATCATGCATCC
81907218 TTGGTTTAT
1 TTGGTTTAT
81907227 ATGTTCGCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.11, C:0.16, G:0.22, T:0.51
Consensus pattern (18 bp):
TTGGTTTATCATGCATCC
Found at i:81918387 original size:34 final size:34
Alignment explanation
Indices: 81918349--81918419 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
81918339 TTTTTCCAAA
81918349 AGTAATTCCCCAATTCTATTTTCTGTGAATTCTT
1 AGTAATTCCCCAATTCTATTTTCTGTGAATTCTT
81918383 AGTAATTCCCCAATTCTATTTTCTGTGAATTCTT
1 AGTAATTCCCCAATTCTATTTTCTGTGAATTCTT
81918417 AGT
1 AGT
81918420 TTAGATAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.10, T:0.46
Consensus pattern (34 bp):
AGTAATTCCCCAATTCTATTTTCTGTGAATTCTT
Found at i:81922322 original size:23 final size:23
Alignment explanation
Indices: 81922296--81922342 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
81922286 TCATTCTCTT
*
81922296 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
81922319 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
81922342 T
1 T
81922343 AATGGCATGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:81924302 original size:17 final size:17
Alignment explanation
Indices: 81924280--81924312 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
81924270 TTTAGGAAAA
81924280 ATTTTGATTGATATATG
1 ATTTTGATTGATATATG
81924297 ATTTTGATTGATATAT
1 ATTTTGATTGATATAT
81924313 CTTGAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (17 bp):
ATTTTGATTGATATATG
Found at i:81926514 original size:18 final size:18
Alignment explanation
Indices: 81926491--81926525 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
81926481 TCGCGATCAA
81926491 TTGTGTGTCCTTGGTTTG
1 TTGTGTGTCCTTGGTTTG
81926509 TTGTGTGTCCTTGGTTT
1 TTGTGTGTCCTTGGTTT
81926526 ATGTGTTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.00, C:0.11, G:0.31, T:0.57
Consensus pattern (18 bp):
TTGTGTGTCCTTGGTTTG
Found at i:81931297 original size:29 final size:29
Alignment explanation
Indices: 81931267--81931468 Score: 164
Period size: 29 Copynumber: 7.0 Consensus size: 29
81931257 CCACAAGACA
*
81931267 TACCTT-TAACAAAGATATCCACAAAGGC
1 TACCTTATAACAAAGATAGCCACAAAGGC
* **
81931295 ATA-CTTTTAACAGTGATAGCCACAAAGGC
1 -TACCTTATAACAAAGATAGCCACAAAGGC
* * *
81931324 TTCCTTATAACAGAGATCGCCACAAAGGC
1 TACCTTATAACAAAGATAGCCACAAAGGC
* *
81931353 TTCCTTATAACAAAGATCGCCACAAAGGC
1 TACCTTATAACAAAGATAGCCACAAAGGC
* * * * *
81931382 TTCTTTATAACAGAGATCA-ACACAAAGAC
1 TACCTTATAACAAAGAT-AGCCACAAAGGC
*
81931411 TTCCTTATAA-AAGAGATCA-CCACAAAGGC
1 TACCTTATAACAA-AGAT-AGCCACAAAGGC
* * *
81931440 T-TCTTTTAACAGAGATAGCCACAAAGGC
1 TACCTTATAACAAAGATAGCCACAAAGGC
81931468 T
1 T
81931469 CACTTTTATG
Statistics
Matches: 147, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
27 1 0.01
28 26 0.18
29 120 0.82
ACGTcount: A:0.39, C:0.24, G:0.14, T:0.23
Consensus pattern (29 bp):
TACCTTATAACAAAGATAGCCACAAAGGC
Found at i:81931364 original size:58 final size:58
Alignment explanation
Indices: 81931285--81931468 Score: 228
Period size: 58 Copynumber: 3.2 Consensus size: 58
81931275 ACAAAGATAT
* * * *
81931285 CCACAAAGGCATACTTTTAACAGTGATAGCCACAAAGGCTTCCTTATAACAGAGATCG
1 CCACAAAGGCTTCCTTATAACAGAGATAGCCACAAAGGCTTCCTTATAACAGAGATCG
* * * *
81931343 CCACAAAGGCTTCCTTATAACAAAGATCGCCACAAAGGCTTCTTTATAACAGAGATCA
1 CCACAAAGGCTTCCTTATAACAGAGATAGCCACAAAGGCTTCCTTATAACAGAGATCG
* * * * *
81931401 ACACAAAGACTTCCTTATAAAAGAGATCA-CCACAAAGGCTT-CTTTTAACAGAGATAG
1 CCACAAAGGCTTCCTTATAACAGAGAT-AGCCACAAAGGCTTCCTTATAACAGAGATCG
81931458 CCACAAAGGCT
1 CCACAAAGGCT
81931469 CACTTTTATG
Statistics
Matches: 106, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
57 21 0.20
58 85 0.80
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.22
Consensus pattern (58 bp):
CCACAAAGGCTTCCTTATAACAGAGATAGCCACAAAGGCTTCCTTATAACAGAGATCG
Found at i:81931393 original size:87 final size:85
Alignment explanation
Indices: 81931269--81931476 Score: 274
Period size: 87 Copynumber: 2.4 Consensus size: 85
81931259 ACAAGACATA
* * * *
81931269 CCTTTAACAAAGATATCCACAAAGGCATACTTTTAACAGTGAT-AGCCACAAAGGCTTCCTTATA
1 CCTTTAACAAAGATAGCCACAAAGGC-TACTTTTAACAGAGATCA-ACACAAAGACTTCCTTATA
* *
81931333 ACAGAGATCGCCACAAAGGCTT
64 AAAGAGATCACCACAAAGGCTT
* *
81931355 CCTTATAACAAAGATCGCCACAAAGGCTTCTTTATAACAGAGATCAACACAAAGACTTCCTTATA
1 CCTT-TAACAAAGATAGCCACAAAGGCTACTTT-TAACAGAGATCAACACAAAGACTTCCTTATA
81931420 AAAGAGATCACCACAAAGGCTT
64 AAAGAGATCACCACAAAGGCTT
* *
81931442 CTTTTAACAGAGATAGCCACAAAGGCTCACTTTTA
1 CCTTTAACAAAGATAGCCACAAAGGCT-ACTTTTA
81931477 TGAAAATAGG
Statistics
Matches: 106, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
86 32 0.30
87 73 0.69
88 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (85 bp):
CCTTTAACAAAGATAGCCACAAAGGCTACTTTTAACAGAGATCAACACAAAGACTTCCTTATAAA
AGAGATCACCACAAAGGCTT
Found at i:81932335 original size:13 final size:13
Alignment explanation
Indices: 81932313--81932345 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
81932303 AAGGGTTTGT
81932313 TTAT-TAAACTAA
1 TTATCTAAACTAA
81932325 TTATCTAAACTAA
1 TTATCTAAACTAA
*
81932338 TTAACTAA
1 TTATCTAA
81932346 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:81935284 original size:17 final size:17
Alignment explanation
Indices: 81935250--81935308 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
81935240 AAAATAAAAT
*
81935250 AATAAAATAG-AAATGAA
1 AATAAAA-AGAAAAAGAA
81935267 AATAAAAAGAAAAAGAA
1 AATAAAAAGAAAAAGAA
* * *
81935284 AAAAATAAATAAAAA-TA
1 AATAA-AAAGAAAAAGAA
81935301 AATAAAAA
1 AATAAAAA
81935309 ATAATAAGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
16 5 0.14
17 22 0.63
18 8 0.23
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.14
Consensus pattern (17 bp):
AATAAAAAGAAAAAGAA
Found at i:81935299 original size:6 final size:6
Alignment explanation
Indices: 81935240--81935324 Score: 57
Period size: 6 Copynumber: 13.7 Consensus size: 6
81935230 TATGTCTTTC
* * * *
81935240 AAAAT- AAAATAA TAAAATA GAAATG AAAATA AAAAGA AAAAGA AAAA-A
1 AAAATA AAAAT-A -AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* *
81935288 ATAAATA AAAATA AATAAAA AATAATA AGAATA AAAA
1 A-AAATA AAAATA AA-AATA AA-AATA AAAATA AAAA
81935325 GATAGGTGGA
Statistics
Matches: 65, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
5 7 0.11
6 40 0.62
7 13 0.20
8 5 0.08
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:81935320 original size:20 final size:21
Alignment explanation
Indices: 81935245--81935322 Score: 67
Period size: 20 Copynumber: 3.8 Consensus size: 21
81935235 CTTTCAAAAT
81935245 AAAATAATAA-AAT--AGAAA
1 AAAATAATAAGAATAAAGAAA
*
81935263 TGAAAATAAAAAGAA-AAAGAAA
1 --AAAATAATAAGAATAAAGAAA
* *
81935285 AAAATAAATAAAAATAAA-TAA
1 AAAAT-AATAAGAATAAAGAAA
81935306 AAAATAATAAGAATAAA
1 AAAATAATAAGAATAAA
81935323 AAGATAGGTG
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
20 25 0.52
21 15 0.31
22 8 0.17
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.15
Consensus pattern (21 bp):
AAAATAATAAGAATAAAGAAA
Found at i:81940716 original size:13 final size:13
Alignment explanation
Indices: 81940694--81940726 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
81940684 AAACGTTTGT
81940694 TTAT-TAAACTAA
1 TTATCTAAACTAA
81940706 TTATCTAAACTAA
1 TTATCTAAACTAA
*
81940719 TTAACTAA
1 TTATCTAA
81940727 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:81942978 original size:32 final size:32
Alignment explanation
Indices: 81942938--81943006 Score: 138
Period size: 32 Copynumber: 2.2 Consensus size: 32
81942928 AAATGACATG
81942938 GAATGAATTTTGTATTCAAATGATGAATTATT
1 GAATGAATTTTGTATTCAAATGATGAATTATT
81942970 GAATGAATTTTGTATTCAAATGATGAATTATT
1 GAATGAATTTTGTATTCAAATGATGAATTATT
81943002 GAATG
1 GAATG
81943007 TTGTGAAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.38, C:0.03, G:0.17, T:0.42
Consensus pattern (32 bp):
GAATGAATTTTGTATTCAAATGATGAATTATT
Found at i:81945523 original size:42 final size:43
Alignment explanation
Indices: 81945463--81945587 Score: 128
Period size: 42 Copynumber: 3.0 Consensus size: 43
81945453 ATTTAGAACC
* *
81945463 ACACGAGTAGAGGACATGGGCGTGTACCTAGGCCATGTGAGTT
1 ACACGAGTAGAGGACATGGGCATGTACCCAGGCCATGTGAGTT
* * *
81945506 ACACGAGT-GAGGACATGGGCATGTGCCCAGGCTATGTGAGTC
1 ACACGAGTAGAGGACATGGGCATGTACCCAGGCCATGTGAGTT
** * * ** *
81945548 ATTCGGGTA-AGGACACGGGCATGTGTCCAGGTCATGTGAG
1 ACACGAGTAGAGGACATGGGCATGTACCCAGGCCATGTGAG
81945588 CCACGTGGGC
Statistics
Matches: 69, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 61 0.88
43 8 0.12
ACGTcount: A:0.24, C:0.19, G:0.36, T:0.21
Consensus pattern (43 bp):
ACACGAGTAGAGGACATGGGCATGTACCCAGGCCATGTGAGTT
Found at i:81945602 original size:42 final size:41
Alignment explanation
Indices: 81945515--81945627 Score: 106
Period size: 42 Copynumber: 2.7 Consensus size: 41
81945505 TACACGAGTG
* * * *
81945515 AGGACATGGGCATGTGCCCAGG-CTATGTGAGTCATTCGGGTA
1 AGGACACGGGCATGTG-CCAGGTC-ATGTGAGCCAGTCGGGCA
81945557 AGGACACGGGCATGTGTCCAGGTCATGTGAGCCACGT-GGGCA
1 AGGACACGGGCATGTG-CCAGGTCATGTGAGCCA-GTCGGGCA
*
81945599 AGGACATC-GGCATGTGCTCAGGTCGTGTG
1 AGGACA-CGGGCATGTGC-CAGGTCATGTG
81945628 GCCTGTAAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
41 1 0.02
42 57 0.93
43 3 0.05
ACGTcount: A:0.20, C:0.21, G:0.37, T:0.21
Consensus pattern (41 bp):
AGGACACGGGCATGTGCCAGGTCATGTGAGCCAGTCGGGCA
Found at i:81947055 original size:234 final size:231
Alignment explanation
Indices: 81946619--81947369 Score: 649
Period size: 255 Copynumber: 3.1 Consensus size: 231
81946609 GTGTGGAAAG
* * * * * * *
81946619 TATAAGGACTTAAAGCATA-TTCCAACAATATGATAATTAACAATAAAATATAATGTACTACTAG
1 TATAAAGACTTAGAGCATATTTCAAACAA-ATAATAATAAATAATAATATATAATGTACTACTA-
* ** * * *
81946683 TATATATAACTATTATTATATTATAGACTATAATAAAATTTATAGTATTACTTGACATGATAATG
64 TATATATAAC---T-TTATATTATAGATTATAATAAAAGATATAGTATTACTCGATATTATAATG
* * * *
81946748 TTTAATCATTTAT-GTATATATTTAAACT-TTTAAGATATTATATACTATATGATATGATATAAC
125 TTTAATCATTGATACTATATATATAAACTATTT-ATATATTATATACTATATGATATGATATAAC
* * * *
81946811 ATTATATAATATGGCAAGAGGGCTAAGTTTCAAATGTATGAAAAA
189 ATTATATAATATAG-AAGAAGGCTAACTTTCAAATGTA-CAAAAA
*
81946856 TATAAAGACTTAGAGCATATTTCAAAC-AAT-ATAATAAATAATAATATATAATGTACTATTATC
1 TATAAAGACTTAGAGCATATTTCAAACAAATAATAATAAATAATAATATATAATGTACTACTAT-
*
81946919 ATATATAACTTTCATATTATAAATTATAATAAAAGATATAGTATTACTCGATATTATAATGTTTA
65 ATATATAACTTT-ATATTATAGATTATAATAAAAGATATAGTATTACTCGATATTATAATGTTTA
* * * *
81946984 ATCCTTGATACATATATATATAAACTATTTATTTATTATATACTATTTGATATGATATAACATTT
129 ATCATTGATAC-TATATATATAAACTATTTATATATTATATACTATATGATATGATATAACATTA
* * *
81947049 TATAATATAGTAGTAAGGCTAACTTTTAAATGTACAATAAG
193 TATAATATAGAAG-AAGGCTAACTTTCAAATGTACAA-AAA
* * *
81947090 TAT-AGGATTTTAGAACATATTTCAACCAGTATAACAATAAATAATAATATATGATAATAATTAA
1 TATAAAGA-CTTAGAGCATATTT----C---A-AAC-----A-AATAATA-AT-A-AATAA-TAA
* * *
81947154 TATATAATATACTACTATGATATATAACTATTATTTTATTGTAGTTTATAATAAAAGATATAGTA
47 TATATAATGTACTACTAT-ATATATAACT-TTA---TATTATAGATTATAATAAAAGATATAGTA
* * * *
81947219 GTGC-CTGATATTATAATGTTTAATCATTGATGC-ATATATATAAACTATTAATATATTATATAC
107 TTACTC-GATATTATAATGTTTAATCATTGATACTATATATATAAACTATTTATATATTATATAC
* * *
81947282 TATATGATATGATATAACATTATATAATATAGTAAGATGACTAATTTTCAAACT-TACAAAAA
171 TATATGATATGATATAACATTATATAATATAG-AAGAAGGCTAACTTTCAAA-TGTACAAAAA
*
81947344 GTATAGAGACTCT-GAGCATATTTCAA
1 -TATAAAGACT-TAGAGCATATTTCAA
81947370 CCAGTATATA
Statistics
Matches: 419, Mismatches: 56, Indels: 68
0.77 0.10 0.13
Matches are distributed among these distances:
231 2 0.00
232 53 0.13
233 7 0.02
234 88 0.21
235 39 0.09
236 2 0.00
237 18 0.04
238 7 0.02
241 1 0.00
242 3 0.01
247 1 0.00
248 1 0.00
249 3 0.01
250 3 0.01
251 3 0.01
252 1 0.00
253 5 0.01
254 32 0.08
255 90 0.21
256 7 0.02
257 53 0.13
ACGTcount: A:0.44, C:0.08, G:0.09, T:0.39
Consensus pattern (231 bp):
TATAAAGACTTAGAGCATATTTCAAACAAATAATAATAAATAATAATATATAATGTACTACTATA
TATATAACTTTATATTATAGATTATAATAAAAGATATAGTATTACTCGATATTATAATGTTTAAT
CATTGATACTATATATATAAACTATTTATATATTATATACTATATGATATGATATAACATTATAT
AATATAGAAGAAGGCTAACTTTCAAATGTACAAAAA
Found at i:81947274 original size:17 final size:18
Alignment explanation
Indices: 81947252--81947312 Score: 61
Period size: 20 Copynumber: 3.3 Consensus size: 18
81947242 TCATTGATGC
81947252 ATATATATAAACTAT-TA
1 ATATATATAAACTATATA
* *
81947269 ATATATTATATACTATATG
1 ATATA-TATAAACTATATA
*
81947288 ATATGATATAACATTATATA
1 ATAT-ATATAA-ACTATATA
81947308 ATATA
1 ATATA
81947313 GTAAGATGAC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
17 5 0.14
18 9 0.26
19 10 0.29
20 11 0.31
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (18 bp):
ATATATATAAACTATATA
Found at i:81947348 original size:255 final size:249
Alignment explanation
Indices: 81946892--81947420 Score: 660
Period size: 255 Copynumber: 2.1 Consensus size: 249
81946882 CAATATAATA
*
81946892 AATAA-TAATATATAATGTACTATTATCATATATAACTTTCATATTATAAATTATAATAAAAGAT
1 AATAATTAATATATAATGTACTACTATCATATATAACTTTCATATTATAAATTATAATAAAAGAT
* * * *
81946956 ATAGTATTACTCGATATTATAATGTTTAATCCTTGATACATATATATATAAACTATTTATTTATT
66 ATAGTATGACTCGATATTATAATGTTTAATCATTGATACA-ATATATATAAACTATTAATATATT
* * *
81947021 ATATACTATTTGATATGATATAACATTTTATAATATAGTAGTAAGGCTAACTTTTAAATGTACAA
130 ATATACTATATGATATGATATAACATTATATAATATAGTAGTAAGACTAACTTTTAAATGTACAA
* * *
81947086 TAAGTATAG-GATTTTAGAACATATTTCAACCAGTATAACAATAAATAATAATATATGAT
195 AAAGTATAGAGACTCT-GAACATATTTCAACCAGTAT----ATAAATAATAATATATGAT
* * * **
81947145 AATAATTAATATATAATATACTACTATGATATATAACTATT-ATTTTATTGTAGTTTATAATAAA
1 AATAATTAATATATAATGTACTACTATCATATATAACT-TTCA---TATTATAAATTATAATAAA
* *
81947209 AGATATAGTAGTGCCT-GATATTATAATGTTTAATCATTGATGC-ATATATATAAACTATTAATA
62 AGATATAGTA-TGACTCGATATTATAATGTTTAATCATTGATACAATATATATAAACTATTAATA
*
81947272 TATTATATACTATATGATATGATATAACATTATATAATATAGTAAG-ATGACTAA-TTTTCAAAC
126 TATTATATACTATATGATATGATATAACATTATATAATATAGT-AGTAAGACTAACTTTT-AAA-
* *
81947335 T-TACAAAAAGTATAGAGACTCTGAGCATATTTCAACCAGTATATAACTAATAATATATGAT
188 TGTACAAAAAGTATAGAGACTCTGAACATATTTCAACCAGTATATAAATAATAATATATGAT
* * *
81947396 AAAAATGAATATATTATGTACTACT
1 AATAATTAATATATAATGTACTACT
81947421 CTAGTATTAT
Statistics
Matches: 241, Mismatches: 25, Indels: 22
0.84 0.09 0.08
Matches are distributed among these distances:
251 39 0.16
253 5 0.02
254 34 0.14
255 102 0.42
256 7 0.03
257 51 0.21
258 3 0.01
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (249 bp):
AATAATTAATATATAATGTACTACTATCATATATAACTTTCATATTATAAATTATAATAAAAGAT
ATAGTATGACTCGATATTATAATGTTTAATCATTGATACAATATATATAAACTATTAATATATTA
TATACTATATGATATGATATAACATTATATAATATAGTAGTAAGACTAACTTTTAAATGTACAAA
AAGTATAGAGACTCTGAACATATTTCAACCAGTATATAAATAATAATATATGAT
Found at i:81947763 original size:23 final size:23
Alignment explanation
Indices: 81947736--81947783 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
81947726 TAATATTTAT
*
81947736 TTTTATATCATAAAAATTTAAAA
1 TTTTATATCATAAAAAATTAAAA
81947759 TTTTATATCATAAAAAATTAAAA
1 TTTTATATCATAAAAAATTAAAA
81947782 TT
1 TT
81947784 AAGTATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (23 bp):
TTTTATATCATAAAAAATTAAAA
Found at i:81954043 original size:27 final size:29
Alignment explanation
Indices: 81954003--81954059 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 29
81953993 ACGGATGACT
*
81954003 CAACTCTTATTCAAAC-ACTTGTTTGAACA
1 CAACTCTTATTCAAACAACTT-TTTAAACA
81954032 CAAC-CTT-TTCAAACAACTTTTTAAACA
1 CAACTCTTATTCAAACAACTTTTTAAACA
81954059 C
1 C
81954060 CTATTTAGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 15 0.58
28 7 0.27
29 4 0.15
ACGTcount: A:0.37, C:0.26, G:0.04, T:0.33
Consensus pattern (29 bp):
CAACTCTTATTCAAACAACTTTTTAAACA
Found at i:81957598 original size:48 final size:48
Alignment explanation
Indices: 81957520--81957839 Score: 333
Period size: 48 Copynumber: 6.7 Consensus size: 48
81957510 TACGTGCACT
81957520 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACAATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACAATATGAGAGCC
* * ** * *
81957568 AGTGTAAGACCATGTTTGGAACATTACATCG-GCA-ATGTAATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACA-AT-ATGAGAGCC
** * * *
81957616 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCA-CAATATGAGAGCC
* *
81957664 AGTGTAAGACCATGTCTAGGACATGGCATCGACCACACTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACAATATGAGAGCC
* * * * *
81957712 AGTGTAAGACCATGTCAGGGACATGGCATCG-GCATTAAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCA-CAATATGAGAGCC
* * * * *
81957760 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACAATATGAGAGCC
* * * *
81957808 AATGTAAGACCATGTTTGGAACACGGCATCGA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA
81957840 TAACTCACTC
Statistics
Matches: 222, Mismatches: 42, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
46 1 0.00
47 5 0.02
48 212 0.95
49 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCACAATATGAGAGCC
Found at i:81957767 original size:144 final size:144
Alignment explanation
Indices: 81957507--81957839 Score: 447
Period size: 144 Copynumber: 2.3 Consensus size: 144
81957497 GACATTTGGG
* * *
81957507 TGATACGTGCACTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAATATGAGAGCCAGTG
1 TGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACAATATGAGAGCCAGTG
** *
81957572 TAAGACCATGTTTGGAACATTACATCGGCAATGTAATGAGAGCCAGTGTAAGACCATGTCTGGGA
66 TAAGACCATGTCAGGAACATGACATCGGCAATGTAATGAGAGCCAGTGTAAGACCATGTCTGGGA
81957637 CATGGCATCGACAT
131 CATGGCATCGACAT
*
81957651 TGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACACTATGAGAGCCAGTG
1 TGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACAATATGAGAGCCAGTG
* * *
81957716 TAAGACCATGTCAGGGACATGGCATCGGC-AT-TAAGATGAGAGCTAGTGTAAGACCATGTCTGG
66 TAAGACCATGTCAGGAACATGACATCGGCAATGT-A-ATGAGAGCCAGTGTAAGACCATGTCTGG
* *
81957779 GACATGGCATCGGCCT
129 GACATGGCATCGACAT
* * * * * * *
81957795 CGACATGTGAGCCAATGTAAGACCATGT-TTGGAACACGGCATCGA
1 TGATATGTGCGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGA
81957840 TAACTCACTC
Statistics
Matches: 167, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
142 1 0.01
143 6 0.04
144 160 0.96
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (144 bp):
TGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACAATATGAGAGCCAGTG
TAAGACCATGTCAGGAACATGACATCGGCAATGTAATGAGAGCCAGTGTAAGACCATGTCTGGGA
CATGGCATCGACAT
Found at i:81961003 original size:31 final size:31
Alignment explanation
Indices: 81960960--81961023 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
81960950 CCTTTTCATA
81960960 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
81960991 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
81961022 TT
1 TT
81961024 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:81961292 original size:23 final size:24
Alignment explanation
Indices: 81961216--81961359 Score: 204
Period size: 24 Copynumber: 6.0 Consensus size: 24
81961206 GCTTTATCAT
*
81961216 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
81961241 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
81961266 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
81961289 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
81961313 ATGACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
81961337 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
81961360 GCACTTCCTC
Statistics
Matches: 110, Mismatches: 4, Indels: 11
0.88 0.03 0.09
Matches are distributed among these distances:
23 24 0.22
24 55 0.50
25 25 0.23
26 6 0.05
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:81961436 original size:20 final size:20
Alignment explanation
Indices: 81961413--81961475 Score: 99
Period size: 20 Copynumber: 3.1 Consensus size: 20
81961403 GAACATCTCG
*
81961413 TGTGCATACCATACATATCA
1 TGTGCATATCATACATATCA
*
81961433 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
*
81961453 TGTGTATATCATACATATCA
1 TGTGCATATCATACATATCA
81961473 TGT
1 TGT
81961476 TTATCAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:81972584 original size:21 final size:21
Alignment explanation
Indices: 81972550--81972589 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
81972540 GGTAAGAAGA
* *
81972550 CACACGGGTATGTTGCCCTTC
1 CACACGGGCATGTTCCCCTTC
*
81972571 CACACGGGCGTGTTCCCCT
1 CACACGGGCATGTTCCCCT
81972590 ATCAGCTTGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.12, C:0.38, G:0.25, T:0.25
Consensus pattern (21 bp):
CACACGGGCATGTTCCCCTTC
Found at i:81973175 original size:63 final size:62
Alignment explanation
Indices: 81972987--81973223 Score: 215
Period size: 63 Copynumber: 3.8 Consensus size: 62
81972977 TGGACACACT
* * * * ** * *
81972987 CCCATGTCCCTGGCCAATATGACCCTAAATCCAAAAGAATGAGTTACACA-ACTTGGACACACG
1 CCCATGT-CCTAGCCCATGTGACCCTAAATCCAAAATAATGAGTTACA-AGGGTTAGACACAAG
* * * * * *
81973050 CCCATGTCCCTAGCCCATGTGACCTTAAATTCAAAACAGTGAGTTACATGGGCTAGACACAAG
1 CCCATGT-CCTAGCCCATGTGACCCTAAATCCAAAATAATGAGTTACAAGGGTTAGACACAAG
* * * *
81973113 CCCATGTACCTAGTCCTTGTGACCCTAAATCTAAAATAATGAGTTACAAGGGTTAGAGACAAG
1 CCCATGT-CCTAGCCCATGTGACCCTAAATCCAAAATAATGAGTTACAAGGGTTAGACACAAG
* * * * *
81973176 CCAATGTCCTTAGCCCGTGTGACACAAAATCCAAAATAGTGAGTTACA
1 CCCATGTCC-TAGCCCATGTGACCCTAAATCCAAAATAATGAGTTACA
81973224 CGGCCTACCA
Statistics
Matches: 141, Mismatches: 31, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
62 2 0.01
63 139 0.99
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (62 bp):
CCCATGTCCTAGCCCATGTGACCCTAAATCCAAAATAATGAGTTACAAGGGTTAGACACAAG
Found at i:81973787 original size:11 final size:12
Alignment explanation
Indices: 81973771--81973850 Score: 70
Period size: 11 Copynumber: 7.4 Consensus size: 12
81973761 GAAGCAAGCA
81973771 AAAAGAAA-AAG
1 AAAAGAAAGAAG
*
81973782 AAAAGAAAGATG
1 AAAAGAAAGAAG
81973794 -AAAG-AAGAA-
1 AAAAGAAAGAAG
*
81973803 AGAAGAAAGAAG
1 AAAAGAAAGAAG
*
81973815 -AAAGAAAGAAT
1 AAAAGAAAGAAG
81973826 AAAAG-AAG-AG
1 AAAAGAAAGAAG
81973836 AAAAG-AAGAA-
1 AAAAGAAAGAAG
81973846 AAAAG
1 AAAAG
81973851 TTAAAGAACA
Statistics
Matches: 57, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
10 21 0.37
11 30 0.53
12 6 0.11
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.03
Consensus pattern (12 bp):
AAAAGAAAGAAG
Found at i:81973796 original size:7 final size:7
Alignment explanation
Indices: 81973773--81973846 Score: 68
Period size: 7 Copynumber: 10.9 Consensus size: 7
81973763 AGCAAGCAAA
81973773 AAGAAA-
1 AAGAAAG
81973779 AAG-AA-
1 AAGAAAG
81973784 AAGAAAG
1 AAGAAAG
*
81973791 ATGAAAG
1 AAGAAAG
81973798 AAGAAAG
1 AAGAAAG
81973805 AAGAAAG
1 AAGAAAG
81973812 AAGAAAG
1 AAGAAAG
*
81973819 AAAGAATAA
1 -AAGAA-AG
81973828 AAG-AAG
1 AAGAAAG
81973834 -AGAAAAG
1 AAG-AAAG
81973841 AAGAAA
1 AAGAAA
81973847 AAAGTTAAAG
Statistics
Matches: 57, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
5 7 0.12
6 6 0.11
7 33 0.58
8 10 0.18
9 1 0.02
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (7 bp):
AAGAAAG
Found at i:81973810 original size:21 final size:20
Alignment explanation
Indices: 81973772--81973850 Score: 79
Period size: 22 Copynumber: 3.7 Consensus size: 20
81973762 AAGCAAGCAA
*
81973772 AAAGAAAAAGAAAAGAAAGATG
1 AAAGAAGAA-AAAAGAAAGA-G
*
81973794 AAAGAAGAAAGAAGAAAGAAG
1 AAAGAAGAAAAAAGAAAG-AG
81973815 AAAGAAAGAATAAAAG-AAGAG
1 AAAG-AAGAA-AAAAGAAAGAG
81973836 AAAAGAAGAAAAAAG
1 -AAAGAAGAAAAAAG
81973851 TTAAAGAACA
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
20 5 0.10
21 20 0.40
22 21 0.42
23 4 0.08
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (20 bp):
AAAGAAGAAAAAAGAAAGAG
Found at i:81973842 original size:18 final size:17
Alignment explanation
Indices: 81973777--81973838 Score: 58
Period size: 16 Copynumber: 3.8 Consensus size: 17
81973767 AGCAAAAAGA
*
81973777 AAAAGAAAAGAAAG-AT
1 AAAAGAAGAGAAAGAAT
* *
81973793 GAAAGAAGAAAGAAGAA-
1 AAAAGAAGAGA-AAGAAT
*
81973810 AGAAGAA-AGAAAGAAT
1 AAAAGAAGAGAAAGAAT
81973826 AAAAGAAGAGAAA
1 AAAAGAAGAGAAA
81973839 AGAAGAAAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
15 5 0.14
16 16 0.46
17 13 0.37
18 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (17 bp):
AAAAGAAGAGAAAGAAT
Found at i:81973856 original size:26 final size:26
Alignment explanation
Indices: 81973801--81973858 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
81973791 ATGAAAGAAG
*
81973801 AAAGAAGAAAGAAGAAAGAAAGAATA
1 AAAGAAGAAAGAAGAAAGAAAAAATA
*
81973827 AAAGAAGAGAA-AAG-AAGAAAAAAGTT
1 AAAGAAGA-AAGAAGAAAGAAAAAA-TA
81973853 AAAGAA
1 AAAGAA
81973859 CATGGATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 8 0.29
26 18 0.64
27 2 0.07
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.05
Consensus pattern (26 bp):
AAAGAAGAAAGAAGAAAGAAAAAATA
Found at i:81981250 original size:39 final size:40
Alignment explanation
Indices: 81981155--81981416 Score: 274
Period size: 39 Copynumber: 6.7 Consensus size: 40
81981145 TTGAATGATG
*
81981155 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
81981193 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
81981234 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
81981273 TCCGGGCTAAG-CCTGAAGGGATTTGTACGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
81981312 TCCGGGCTAAG-CCCGAAGGCATTTGCGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* ** *
81981351 TCCAGTTTAAGTCCCGAAGGCATTTGTACGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
81981390 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
81981417 AACGAGGAGC
Statistics
Matches: 190, Mismatches: 24, Indels: 17
0.82 0.10 0.07
Matches are distributed among these distances:
39 123 0.65
40 55 0.29
41 11 0.06
42 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:81981447 original size:79 final size:79
Alignment explanation
Indices: 81981207--81981449 Score: 228
Period size: 78 Copynumber: 3.1 Consensus size: 79
81981197 GGACTAAGAT
* * **
81981207 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGAT-ACTA
1 CCGAAGGCATTTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TGACTA
* * * *
81981271 ATTCCGGGCT-AAGC
65 AATCCAGGTTAAATC
* * * ** *
81981285 CTGAAGGGATTTGTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGCGCGAGTTACTAA
1 CCGAAGGCATTTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
* *
81981350 ATCCAGTTTAAGTC
66 ATCCAGGTTAAATC
*
81981364 CCGAAGGCATTTGTACGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTACGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
81981426 CTATATCC-GGTTAAATT
62 CTAAATCCAGGTTAAATC
81981443 CCGAAGG
1 CCGAAGG
81981450 TACGTGATTT
Statistics
Matches: 138, Mismatches: 21, Indels: 11
0.81 0.12 0.06
Matches are distributed among these distances:
77 1 0.01
78 67 0.49
79 45 0.33
80 25 0.18
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCAGGTTAAATC
Found at i:81990099 original size:40 final size:40
Alignment explanation
Indices: 81990005--81990229 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 40
81989995 TATTCGAATG
* * * *
81990005 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTA-GCGACT
* * * * * *
81990046 ATAATCGGA-CTAAGATCTGAAGGCATTCGTGCGAGTTG-CT
1 AT-ATCCGAGCTAAGACCCGAAGGCATTTGTGCTAG-CGACT
*
81990086 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
81990126 ATATCCGAGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * * * *
81990166 ATATCCGGGCTAAGTCCTGAAGGCATTTATGCTAGTGACC
1 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* *
81990206 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGAGCTAAGACCCGAAGGC
81990230 CTTGCGCAAG
Statistics
Matches: 153, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
39 6 0.04
40 120 0.78
41 23 0.15
42 4 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:81990188 original size:80 final size:80
Alignment explanation
Indices: 81990005--81990265 Score: 260
Period size: 80 Copynumber: 3.3 Consensus size: 80
81989995 TATTCGAATG
* * * *
81990005 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAATCGGA-CTAAGATCTGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTAT-ATCCGAGCTAAGACCCGAAGG
*
81990069 CATTCGTGCGAGTTGCT
64 CATTCGTGCGAGTCGCT
* * * * *
81990086 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGAGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGAGCTAAGACCCGAAGGCA
* *
81990151 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * * *
81990166 ATATCCGGGCTAAGTCCTGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGAGCTAAGACCCGAAGGCA
* * * *
81990231 TT-GCGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
81990245 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
81990266 ATTACTTGAG
Statistics
Matches: 148, Mismatches: 29, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
78 13 0.09
79 18 0.12
80 86 0.58
81 31 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGAGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:81990219 original size:120 final size:121
Alignment explanation
Indices: 81990005--81990229 Score: 287
Period size: 120 Copynumber: 1.9 Consensus size: 121
81989995 TATTCGAATG
* ** * *
81990005 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAATCGGACTAAGATCTGAAGGC
1 ATATCCGAGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAATCGGACTAAGATCTGAAGGC
* * *
81990070 ATTCGTGCGAGTTGCTATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
*
81990126 ATATCCGAGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTAT-ATCCGGGCTAAG-TCCTGAAG
1 ATATCCGAGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAAT-CGGACTAAGAT-CTGAAG
* * *
81990188 GCATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
64 GCATTCATGCGAGTTG-CCACATCCGAGCTAAGACCCGAAGGC
81990230 CTTGCGCAAG
Statistics
Matches: 89, Mismatches: 12, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
119 5 0.06
120 54 0.61
121 30 0.34
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (121 bp):
ATATCCGAGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAATCGGACTAAGATCTGAAGGC
ATTCATGCGAGTTGCCACATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:81994806 original size:28 final size:28
Alignment explanation
Indices: 81994757--81994814 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
81994747 AACGCCCCAA
*
81994757 TTTTCGAGATTTTCGAGATTTCTGTGATT
1 TTTTCGAGATTTTAGAGATTTCTGTG-TT
81994786 TTTTACGA-ATTTTAGA-ATTTCTGTGTT
1 TTTT-CGAGATTTTAGAGATTTCTGTGTT
81994813 TT
1 TT
81994815 GACTATATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
27 4 0.15
28 9 0.33
29 11 0.41
30 3 0.11
ACGTcount: A:0.19, C:0.09, G:0.17, T:0.55
Consensus pattern (28 bp):
TTTTCGAGATTTTAGAGATTTCTGTGTT
Found at i:81996747 original size:27 final size:26
Alignment explanation
Indices: 81996680--81996790 Score: 134
Period size: 27 Copynumber: 4.1 Consensus size: 26
81996670 AGAAGCGTTT
*
81996680 TGGTGGC-CATGCCACAAATATCTATTTC
1 TGGTGGCTC-TGCCAC-AATATCT-GTTC
*
81996708 TGGTGGCTATGCCACAAATATCTGTTC
1 TGGTGGCTCTGCCAC-AATATCTGTTC
81996735 TGGTGGCTCTGCCACAATATCTGTATC
1 TGGTGGCTCTGCCACAATATCTGT-TC
* *
81996762 TGGTGACTCTGTCACAATATCTGTTC
1 TGGTGGCTCTGCCACAATATCTGTTC
81996788 TGG
1 TGG
81996791 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
26 14 0.18
27 41 0.54
28 21 0.28
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (26 bp):
TGGTGGCTCTGCCACAATATCTGTTC
Found at i:82021172 original size:27 final size:27
Alignment explanation
Indices: 82021134--82021246 Score: 158
Period size: 27 Copynumber: 4.2 Consensus size: 27
82021124 GAGGAAGCAT
82021134 TCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
*
82021161 TCTGGTGGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
*
82021189 TCTGGTGGCTCTACCACAATATCTGTA
1 TCTGGTGGCTCTGCCACAATATCTGTA
* *
82021216 TCTGGTGACTCTGTCACAATATCTGT-
1 TCTGGTGGCTCTGCCACAATATCTGTA
82021242 TCTGG
1 TCTGG
82021247 CAGCCATGCT
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 16 0.20
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATATCTGTA
Found at i:82021240 original size:54 final size:54
Alignment explanation
Indices: 82021133--82021246 Score: 169
Period size: 55 Copynumber: 2.1 Consensus size: 54
82021123 GGAGGAAGCA
* *
82021133 TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG
1 TTCTGGTGGCTCTACCACAAATATCTGATCTGGTGACTCTGCCACAAATATCTG
*
82021187 TTTCTGGTGGCTCTACCAC-AATATCTGTATCTGGTGACTCTGTCAC-AATATCTG
1 -TTCTGGTGGCTCTACCACAAATATCTG-ATCTGGTGACTCTGCCACAAATATCTG
82021241 TTCTGG
1 TTCTGG
82021247 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
53 6 0.11
54 16 0.29
55 33 0.60
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (54 bp):
TTCTGGTGGCTCTACCACAAATATCTGATCTGGTGACTCTGCCACAAATATCTG
Found at i:82032043 original size:39 final size:40
Alignment explanation
Indices: 82031998--82032222 Score: 224
Period size: 40 Copynumber: 5.7 Consensus size: 40
82031988 GCTCCTCGTT
* * * *
82031998 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
82032038 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
82032077 CGAATGCCTTCGGGACTTAACCCGAATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
82032117 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATTTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
82032157 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
82032198 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
82032223 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
39 39 0.25
40 101 0.65
41 15 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:82032231 original size:41 final size:41
Alignment explanation
Indices: 82032154--82032231 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
82032144 TTTGTATTTC
* * *
82032154 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
82032195 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
82032232 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:82051145 original size:26 final size:26
Alignment explanation
Indices: 82051108--82051189 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
82051098 TGATACAAAT
*
82051108 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82051134 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82051160 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82051186 TGAT
1 TGAT
82051190 GGGATTTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82052844 original size:27 final size:26
Alignment explanation
Indices: 82052803--82052943 Score: 156
Period size: 27 Copynumber: 5.2 Consensus size: 26
82052793 AGGAAGCGTC
*
82052803 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
82052830 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
82052857 CTGGTGGCTATGCCACGATTATCTAAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
82052884 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* * *
82052911 CTGGTGGCTCTGCCATAATATCTATAT
1 CTGGTGGCTCTGCCACATTATCT-GAT
82052938 CTGGTG
1 CTGGTG
82052944 ACTTAGTCAC
Statistics
Matches: 96, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
26 9 0.09
27 85 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:82052891 original size:54 final size:54
Alignment explanation
Indices: 82052803--82052943 Score: 221
Period size: 54 Copynumber: 2.6 Consensus size: 54
82052793 AGGAAGCGTC
* *
82052803 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTT
*
82052857 CTGGTGGCTATGCCACGATTATCTAATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTT
* *
82052911 CTGGTGGCTCTGCCATAA-TATCTATATCTGGTG
1 CTGGTGGCTATGCCACAATTATCTA-ATCTGGTG
82052944 ACTTAGTCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 6 0.08
54 74 0.93
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:82054068 original size:39 final size:39
Alignment explanation
Indices: 82054025--82054152 Score: 193
Period size: 39 Copynumber: 3.3 Consensus size: 39
82054015 GGTCTTTAAC
** *
82054025 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* * * *
82054064 CCGGATATATTTCTAGCATATAGCCTGCGAATCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
82054103 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
82054142 CCGGATATTTT
1 CCGGATATTTT
82054153 CAATCTCATA
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:82057691 original size:56 final size:56
Alignment explanation
Indices: 82057600--82057710 Score: 134
Period size: 56 Copynumber: 2.0 Consensus size: 56
82057590 TCTTACATGT
* * *
82057600 AATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACTCGCACACATATATCGG
1 AATCACATATCGATGCCAATGTACCAAACAGGGTCTTACTCGCACACATATATCGG
** * **
82057656 AATCACATATCGATGCCAATGTATTAAAC-GTGGTCTTACTTGCATGCATATATCG
1 AATCACATATCGATGCCAATGTACCAAACAG-GGTCTTACTCGCACACATATATCG
82057711 ATGCCATGGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
55 1 0.02
56 45 0.98
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (56 bp):
AATCACATATCGATGCCAATGTACCAAACAGGGTCTTACTCGCACACATATATCGG
Found at i:82070983 original size:50 final size:49
Alignment explanation
Indices: 82070869--82071055 Score: 189
Period size: 50 Copynumber: 3.8 Consensus size: 49
82070859 TGAGGTCGCA
* * * * * *
82070869 TGTGTAGTACTAAATGTAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
* **
82070920 TGTGTAGTACTAAGTACAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * *
82070970 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
* *
82071019 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
82071056 TAGCTTCGGC
Statistics
Matches: 115, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 40 0.35
50 42 0.37
51 28 0.24
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:82081218 original size:79 final size:82
Alignment explanation
Indices: 82081107--82081291 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
82081097 GCTACTCGTT
* * *
82081107 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
82081170 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
82081187 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
82081250 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
82081267 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82081292 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:82081291 original size:40 final size:40
Alignment explanation
Indices: 82081088--82081291 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
82081078 CGGAATTTAA
** *
82081088 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
82081128 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
82081168 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
82081207 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
82081247 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
82081287 CCGGA
1 CCGGA
82081292 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:82084292 original size:50 final size:49
Alignment explanation
Indices: 82084158--82084341 Score: 185
Period size: 50 Copynumber: 3.7 Consensus size: 49
82084148 ATCTATTATG
*** *
82084158 AGGTCGAC-TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 AGGTC-ACATGTGTAGTACTAAGTGCAGGCTACTACATGTA-CC--AGACTGT
* * **
82084210 -GATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACT-GT
* *
82084258 GAGGTCACGTGTGTAGTACTAAGTCCAGGCTACTACATGTACCAGACTGT
1 -AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTGT
* *
82084308 TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
82084342 TGCGTACCAG
Statistics
Matches: 111, Mismatches: 16, Indels: 13
0.79 0.11 0.09
Matches are distributed among these distances:
47 1 0.01
48 4 0.04
49 30 0.27
50 42 0.38
51 34 0.31
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (49 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTGT
Found at i:82088337 original size:40 final size:39
Alignment explanation
Indices: 82088239--82088461 Score: 241
Period size: 40 Copynumber: 5.6 Consensus size: 39
82088229 TCCTCGTTCA
* * * * *
82088239 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
82088278 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
82088317 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
82088357 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * * * *
82088397 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
82088438 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
82088462 CAGCATTGAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:82088461 original size:120 final size:119
Alignment explanation
Indices: 82088239--82088461 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 119
82088229 TCCTCGTTCA
* * * *
82088239 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
82088304 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
82088358 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* *
82088422 TATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
82088462 CAGCATTGAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
119 37 0.43
120 44 0.51
121 6 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:82091875 original size:28 final size:29
Alignment explanation
Indices: 82091820--82091877 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 29
82091810 TACAAGGGTT
*
82091820 TTCACACGGCCTGGCACACGCCCGTGTCC
1 TTCACACGGCCTGGCACACGCCCATGTCC
82091849 TTCACACGGCCAT-G-ACACGCCCATGTCC
1 TTCACACGGCC-TGGCACACGCCCATGTCC
82091877 T
1 T
82091878 AGCCCTTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 14 0.52
29 12 0.44
30 1 0.04
ACGTcount: A:0.17, C:0.43, G:0.21, T:0.19
Consensus pattern (29 bp):
TTCACACGGCCTGGCACACGCCCATGTCC
Found at i:82095473 original size:22 final size:22
Alignment explanation
Indices: 82095446--82095568 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
82095436 ATGTGCATAT
82095446 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
82095468 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
*
82095492 TATGTGATAAGGCCAAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* *
82095515 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
82095537 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
82095562 ATGTGAT
1 ATGTGAT
82095569 GAATATGAAC
Statistics
Matches: 73, Mismatches: 12, Indels: 32
0.62 0.10 0.27
Matches are distributed among these distances:
22 24 0.33
23 17 0.23
24 16 0.22
25 16 0.22
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:82095490 original size:47 final size:47
Alignment explanation
Indices: 82095430--82095614 Score: 289
Period size: 47 Copynumber: 3.9 Consensus size: 47
82095420 GATAATTGTG
**
82095430 ATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
82095477 ATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
82095524 ATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * * *
82095571 ATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
82095615 AATATATGTA
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:82095869 original size:37 final size:37
Alignment explanation
Indices: 82095819--82095968 Score: 246
Period size: 37 Copynumber: 4.1 Consensus size: 37
82095809 GGAAATATAT
*
82095819 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
82095856 TCCGGGTAAGACCCGATGACTACGTGTGAAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
82095893 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
82095930 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
82095967 TC
1 TC
82095969 TGAGCTAAAG
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 107 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:82096933 original size:46 final size:46
Alignment explanation
Indices: 82096852--82097062 Score: 157
Period size: 46 Copynumber: 4.5 Consensus size: 46
82096842 GTGTCGATGC
*
82096852 CATGTCCTAGACATGGTCTTACACTGACTATCATCTC-ATAGCCGACG
1 CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCGA-AGCCGACG
* * * *
82096899 CATGTCCCAGACATGTCTTGCACTGGCT-TACATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGACTAT-CATCTCGAAGCCGACG
* *
82096945 CATGTCCCAGACATGTCTTACACT-AGC-ACTCGTCTC-AATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGA-CTA-TCATCTCGAA-GCCGACG
* * * ** *
82096991 TCATTTCCCAGACATGGTCTTACACT-AGCTTTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGA-CTATCAT-CTCGAAGCCGACG
*
82097039 CATGTCCCAGCCATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
82097063 TGTTCACACA
Statistics
Matches: 136, Mismatches: 17, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
45 2 0.01
46 70 0.51
47 40 0.29
48 23 0.17
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTATCATCTCGAAGCCGACG
Found at i:82097045 original size:94 final size:91
Alignment explanation
Indices: 82096846--82097062 Score: 242
Period size: 94 Copynumber: 2.3 Consensus size: 91
82096836 GGTAAAGTGT
*
82096846 CGATGCCATGTCCTAGACATGGTCTTACACTGACTATCATCTCATAGCCGACGCATGTCCCAGAC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGAC-ATCATCTCATAGCCGACGCATGTCCCAGAC
* * *
82096911 ATGTCTTGCACTGGCTTACATCTCGAGGC
63 ATGTCTTACACTAGCTTACATATCGAGGC
* * *
82096940 CGATGCATGTCCCAGACATGTCTTACACT-AGCACTCGTCTCA-ATGCCGATGTCATTTCCCAGA
1 CGATGCATGTCCCAGACATGTCTTACACTGA-CA-TCATCTCATA-GCCGACG-CATGTCCCAGA
* *
82097003 CATGGTCTTACACTAGCTTTCATAAT-GTGGC
62 CAT-GTCTTACACTAGCTTACAT-ATCGAGGC
*
82097034 CGATGCATGTCCCAGCCATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
82097063 TGTTCACACA
Statistics
Matches: 107, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
91 3 0.03
92 24 0.22
93 26 0.24
94 53 0.50
95 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (91 bp):
CGATGCATGTCCCAGACATGTCTTACACTGACATCATCTCATAGCCGACGCATGTCCCAGACATG
TCTTACACTAGCTTACATATCGAGGC
Found at i:82097407 original size:33 final size:33
Alignment explanation
Indices: 82097370--82097435 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
82097360 CTCATTTAGT
*
82097370 CTCTAATTAGAATTAAGAAATCAAAAATTCTCA
1 CTCTAATTAGAATTAAGAAATAAAAAATTCTCA
82097403 CTCTAATTAGAATTAAGAAATAAAAAATTCTCA
1 CTCTAATTAGAATTAAGAAATAAAAAATTCTCA
82097436 TATTTGGTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.50, C:0.14, G:0.06, T:0.30
Consensus pattern (33 bp):
CTCTAATTAGAATTAAGAAATAAAAAATTCTCA
Found at i:82102495 original size:40 final size:39
Alignment explanation
Indices: 82102458--82102651 Score: 280
Period size: 40 Copynumber: 4.9 Consensus size: 39
82102448 GGATATAGCT
* *
82102458 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGTA
* *
82102498 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
* *
82102538 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
* *
82102578 ACTCGCACAAATACCTTCGGGACTTAGCCCAGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GGTTTAGTA
82102618 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
82102652 ATCATCCAAA
Statistics
Matches: 140, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 3 0.02
40 134 0.96
41 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
Found at i:82110591 original size:40 final size:40
Alignment explanation
Indices: 82110547--82110737 Score: 278
Period size: 40 Copynumber: 4.8 Consensus size: 40
82110537 GGATATAGCT
* *
82110547 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
82110587 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATTTTGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
82110627 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
82110667 ACTCACACAAAT-ACTTCAGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
82110706 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
82110738 TTATCATCCG
Statistics
Matches: 134, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
39 34 0.25
40 98 0.73
41 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:82110712 original size:79 final size:80
Alignment explanation
Indices: 82110547--82110741 Score: 286
Period size: 79 Copynumber: 2.5 Consensus size: 80
82110537 GGATATAGCT
* * * * * *
82110547 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACCAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGACTTCAGGACTT
*
82110612 AGCCCGGATTTTGTA
66 AGCCCGGATTTAGTA
* *
82110627 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGATT-TGGTAACTCACACAAAT-ACTTCAGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCACACAAATGACTTCAGGACT
82110690 TAGCCCGGATTTAGTA
65 TAGCCCGGATTTAGTA
82110706 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
82110742 CATCCGAATA
Statistics
Matches: 103, Mismatches: 10, Indels: 5
0.87 0.08 0.04
Matches are distributed among these distances:
78 2 0.02
79 56 0.54
80 43 0.42
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGACTTCAGGACTT
AGCCCGGATTTAGTA
Found at i:82113635 original size:30 final size:30
Alignment explanation
Indices: 82113600--82113666 Score: 109
Period size: 30 Copynumber: 2.3 Consensus size: 30
82113590 TAAATTATAG
82113600 GCTAAATTGAATAGACCAAATGCTGAATGT
1 GCTAAATTGAATAGACCAAATGCTGAATGT
* *
82113630 GCTAAATTGAATAGATCGAATGCTGAATGT
1 GCTAAATTGAATAGACCAAATGCTGAATGT
82113660 G-TAAATT
1 GCTAAATT
82113667 CGTATGAGCT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
29 6 0.17
30 29 0.83
ACGTcount: A:0.39, C:0.10, G:0.21, T:0.30
Consensus pattern (30 bp):
GCTAAATTGAATAGACCAAATGCTGAATGT
Found at i:82113724 original size:24 final size:23
Alignment explanation
Indices: 82113687--82113755 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 23
82113677 TACCGATATA
*
82113687 TCAGCTCGTAAGAGCTTACTGTTT
1 TCAGCTCAT-AGAGCTTACTGTTT
**
82113711 TCAGCTCATCAGAGCTTAC-CATT
1 TCAGCTCAT-AGAGCTTACTGTTT
82113734 TCAGCTCAATAGAGCTTACTGT
1 TCAGCTC-ATAGAGCTTACTGT
82113756 CCATCAGCTC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
23 18 0.49
24 19 0.51
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (23 bp):
TCAGCTCATAGAGCTTACTGTTT
Found at i:82113739 original size:23 final size:22
Alignment explanation
Indices: 82113672--82113752 Score: 72
Period size: 24 Copynumber: 3.4 Consensus size: 22
82113662 AAATTCGTAT
*
82113672 GAGCTTACCGATATATCAGCTCGTAA
1 GAGCTTACC-AT-T-TCAGCTCAT-A
**
82113698 GAGCTTACTGTTTTCAGCTCATCA
1 GAGCTTAC-CATTTCAGCTCAT-A
82113722 GAGCTTACCATTTCAGCTCAATA
1 GAGCTTACCATTTCAGCTC-ATA
82113745 GAGCTTAC
1 GAGCTTAC
82113753 TGTCCATCAG
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
23 18 0.38
24 19 0.40
25 1 0.02
26 9 0.19
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (22 bp):
GAGCTTACCATTTCAGCTCATA
Found at i:82119372 original size:55 final size:55
Alignment explanation
Indices: 82119288--82119397 Score: 195
Period size: 55 Copynumber: 2.0 Consensus size: 55
82119278 TTCACACGGC
82119288 CGTGTACTGCCACAACCACACGCCTGTGTGGCATCGACAGAACCATTTTCGGCTT
1 CGTGTACTGCCACAACCACACGCCTGTGTGGCATCGACAGAACCATTTTCGGCTT
*
82119343 CGTGTACTGCCACAACCACACGTCC-GTGTGGCATCGACAGAACTATTTTCGGCTT
1 CGTGTACTGCCACAACCACACG-CCTGTGTGGCATCGACAGAACCATTTTCGGCTT
82119398 TCACCGTTTC
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
55 51 0.96
56 2 0.04
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.25
Consensus pattern (55 bp):
CGTGTACTGCCACAACCACACGCCTGTGTGGCATCGACAGAACCATTTTCGGCTT
Found at i:82133249 original size:55 final size:53
Alignment explanation
Indices: 82133094--82133300 Score: 189
Period size: 53 Copynumber: 3.8 Consensus size: 53
82133084 TTTCTTTTTA
* * * *
82133094 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTACCCTTGCCTTATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * *
82133147 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
** * ** * * * *
82133201 TAGTTTATTAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
* * * *
82133256 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
82133301 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 45 0.37
54 37 0.31
55 39 0.32
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (53 bp):
AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:82137284 original size:18 final size:18
Alignment explanation
Indices: 82137261--82137298 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
82137251 TAGGGATTGA
**
82137261 AATGGTTATGTAAATGTT
1 AATGGTTACATAAATGTT
82137279 AATGGTTACATAAATGTT
1 AATGGTTACATAAATGTT
82137297 AA
1 AA
82137299 AATTACATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.03, G:0.18, T:0.39
Consensus pattern (18 bp):
AATGGTTACATAAATGTT
Found at i:82141448 original size:23 final size:24
Alignment explanation
Indices: 82141401--82141459 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 24
82141391 AATTGAGTAT
*
82141401 TTGAATGTATAT-ATTTAATTGAA
1 TTGAATGTATATGATTTAATTAAA
*
82141424 TTGAATGTATATGATTTGA-TAAA
1 TTGAATGTATATGATTTAATTAAA
82141447 TTGAAT-TAT-TGAT
1 TTGAATGTATATGAT
82141460 CATTAAATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 4 0.12
22 3 0.09
23 21 0.64
24 5 0.15
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.47
Consensus pattern (24 bp):
TTGAATGTATATGATTTAATTAAA
Found at i:82141652 original size:23 final size:24
Alignment explanation
Indices: 82141592--82141686 Score: 74
Period size: 23 Copynumber: 4.1 Consensus size: 24
82141582 AGACTCACCA
*
82141592 CAGCTCGTA-AGAGCTTACTGTTTT
1 CAGCTCGTATAGAGCTTACCG-TTT
* * *
82141616 CAACTCAT-TGGAGCTTACCGTTT
1 CAGCTCGTATAGAGCTTACCGTTT
*
82141639 CAGCTCGTAT-GAGCTTACTG-TT
1 CAGCTCGTATAGAGCTTACCGTTT
* * *
82141661 CAGGTC-AATAGAGCTTACCATTT
1 CAGCTCGTATAGAGCTTACCGTTT
82141684 CAG
1 CAG
82141687 TTCAATAAAG
Statistics
Matches: 56, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
21 2 0.04
22 15 0.27
23 23 0.41
24 16 0.29
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (24 bp):
CAGCTCGTATAGAGCTTACCGTTT
Found at i:82141674 original size:22 final size:22
Alignment explanation
Indices: 82141649--82141706 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
82141639 CAGCTCGTAT
82141649 GAGCTTACTGTTCAGGTCAATA
1 GAGCTTACTGTTCAGGTCAATA
*
82141671 GAGCTTACCAT-TTCAGTTCAATA
1 GAGCTTA-C-TGTTCAGGTCAATA
*
82141694 AAGCTTACTGTTC
1 GAGCTTACTGTTC
82141707 TTCAACTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
21 1 0.03
22 11 0.35
23 18 0.58
24 1 0.03
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (22 bp):
GAGCTTACTGTTCAGGTCAATA
Found at i:82141691 original size:23 final size:22
Alignment explanation
Indices: 82141626--82141701 Score: 66
Period size: 23 Copynumber: 3.4 Consensus size: 22
82141616 CAACTCATTG
*
82141626 GAGCTTACCGTTTCAGCTC-GTA
1 GAGCTTACC-TTTCAGCTCAATA
*
82141648 TGAGCTTA-CTGTTCAGGTCAATA
1 -GAGCTTACCT-TTCAGCTCAATA
*
82141671 GAGCTTACCATTTCAGTTCAATA
1 GAGCTTACC-TTTCAGCTCAATA
*
82141694 AAGCTTAC
1 GAGCTTAC
82141702 TGTTCTTCAA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
21 1 0.02
22 15 0.33
23 28 0.62
24 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (22 bp):
GAGCTTACCTTTCAGCTCAATA
Found at i:82146656 original size:24 final size:25
Alignment explanation
Indices: 82146619--82146675 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
82146609 TGGAGGCCTA
*
82146619 CCCTCTTTTAAT-AACTGGGGCAAAG
1 CCCT-TTTTAATAAACTAGGGCAAAG
* *
82146644 CCCTTTTTGATAAACTAGGGCGAAG
1 CCCTTTTTAATAAACTAGGGCAAAG
*
82146669 ACCTTTT
1 CCCTTTT
82146676 CGGTAAATTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 6 0.22
25 21 0.78
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (25 bp):
CCCTTTTTAATAAACTAGGGCAAAG
Found at i:82146659 original size:25 final size:25
Alignment explanation
Indices: 82146631--82146700 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
82146621 CTCTTTTAAT
*
82146631 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* * * *
82146656 AACTAGGGCGAAGACCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
82146681 AATTGGGGCATAA-CCCTTTT
1 AACTGGGGCA-AAGCCCTTTT
82146701 GCACTTCCTC
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
25 33 0.94
26 2 0.06
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:82154566 original size:25 final size:25
Alignment explanation
Indices: 82154538--82154607 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
82154528 CTCTTTTAAT
*
82154538 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
82154563 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
82154588 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
82154608 GCACTTTCTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:82154686 original size:11 final size:11
Alignment explanation
Indices: 82154655--82154702 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
82154645 ATATGGATAC
82154655 ATCATGTGCAT
1 ATCATGTGCAT
*
82154666 ATCA--TACAT
1 ATCATGTGCAT
82154675 ATCATGTGCAT
1 ATCATGTGCAT
*
82154686 ATCATGT-CAA
1 ATCATGTGCAT
82154696 ATCATGT
1 ATCATGT
82154703 ATATCAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 9 0.28
11 15 0.47
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:82158092 original size:18 final size:19
Alignment explanation
Indices: 82158063--82158106 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
82158053 TTTTGGCCGA
82158063 ATATACTTTTCATATGCA-C
1 ATATA-TTTTCATATGCATC
*
82158082 ATATATTTTCATTTGCATC
1 ATATATTTTCATATGCATC
82158101 ATATAT
1 ATATAT
82158107 AATTTGTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.32, C:0.16, G:0.05, T:0.48
Consensus pattern (19 bp):
ATATATTTTCATATGCATC
Found at i:82162130 original size:23 final size:23
Alignment explanation
Indices: 82162087--82162131 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
82162077 GATTATTTGA
*
82162087 ATGTATATATTTAATTGAATTGG
1 ATGTATATATTTAATTAAATTGG
*
82162110 ATGTATATGATTTGA-TAAATTG
1 ATGTATAT-ATTTAATTAAATTG
82162132 AATTATTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.47
Consensus pattern (23 bp):
ATGTATATATTTAATTAAATTGG
Found at i:82162329 original size:23 final size:23
Alignment explanation
Indices: 82162303--82162422 Score: 86
Period size: 23 Copynumber: 5.2 Consensus size: 23
82162293 GATATATCAA
*
82162303 CTCATAAGAGCTTATTGTTTCAG
1 CTCATAAGAGCTTACTGTTTCAG
** * *
82162326 CTCATTGGAGCTTACAGTTTTA-
1 CTCATAAGAGCTTACTGTTTCAG
* *
82162348 CTTCGTATGAGCTTACTG-TTCAG
1 C-TCATAAGAGCTTACTGTTTCAG
**
82162371 CTCA-ATAGAGCTTACCATTTCAG
1 CTCATA-AGAGCTTACTGTTTCAG
82162394 CTCA-ATAGAGCTTACTGTTCATCAG
1 CTCATA-AGAGCTTACTGTT--TCAG
82162419 CTCA
1 CTCA
82162423 AGAGGAGCTT
Statistics
Matches: 75, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
21 1 0.01
22 14 0.19
23 52 0.69
25 8 0.11
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.36
Consensus pattern (23 bp):
CTCATAAGAGCTTACTGTTTCAG
Found at i:82162384 original size:22 final size:22
Alignment explanation
Indices: 82162356--82162414 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 22
82162346 TACTTCGTAT
82162356 GAGCTTACTGTTCAGCTCAATA
1 GAGCTTACTGTTCAGCTCAATA
82162378 GAGCTTACCAT-TTCAGCTCAATA
1 GAGCTTA-C-TGTTCAGCTCAATA
82162401 GAGCTTACTGTTCA
1 GAGCTTACTGTTCA
82162415 TCAGCTCAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
21 1 0.03
22 12 0.35
23 20 0.59
24 1 0.03
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCAATA
Found at i:82162440 original size:23 final size:22
Alignment explanation
Indices: 82162356--82162440 Score: 73
Period size: 23 Copynumber: 3.6 Consensus size: 22
82162346 TACTTCGTAT
* *
82162356 GAGCTTACTGTTCAGCTCAATA
1 GAGCTTACCGATCAGCTCAATA
82162378 GAGCTTACC-ATTTCAGCTCAATA
1 GAGCTTACCGA--TCAGCTCAATA
* *
82162401 GAGCTTACTGTTCATCAGCTCAAGA
1 GAGCTTACCG---ATCAGCTCAATA
82162426 GGAGCTTACCGATCA
1 -GAGCTTACCGATCA
82162441 TGGATCATAA
Statistics
Matches: 51, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
22 8 0.16
23 23 0.45
25 10 0.20
26 9 0.18
27 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (22 bp):
GAGCTTACCGATCAGCTCAATA
Found at i:82162441 original size:26 final size:25
Alignment explanation
Indices: 82162367--82162441 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 25
82162357 AGCTTACTGT
*
82162367 TCAGCTCAATAGAGCTTACC-AT-T
1 TCAGCTCAATAGAGCTTACCGATCA
* *
82162390 TCAGCTCAATAGAGCTTACTGTTCA
1 TCAGCTCAATAGAGCTTACCGATCA
*
82162415 TCAGCTCAAGAGGAGCTTACCGATCA
1 TCAGCTCAATA-GAGCTTACCGATCA
82162441 T
1 T
82162442 GGATCATAAG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
23 19 0.44
24 1 0.02
25 10 0.23
26 13 0.30
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28
Consensus pattern (25 bp):
TCAGCTCAATAGAGCTTACCGATCA
Found at i:82162654 original size:20 final size:20
Alignment explanation
Indices: 82162580--82162660 Score: 83
Period size: 20 Copynumber: 4.0 Consensus size: 20
82162570 ATAAGATATG
* *
82162580 TATTTATATGGATGAATTAC
1 TATTTATACGGATGAACTAC
* * *
82162600 TATTAATACGGAGGAATTAC
1 TATTTATACGGATGAACTAC
**
82162620 TA-TTATTACTAATGAACTAC
1 TATTTA-TACGGATGAACTAC
82162640 TATTTATACGGATGAACTAC
1 TATTTATACGGATGAACTAC
82162660 T
1 T
82162661 GGCAAGCTCG
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
19 2 0.04
20 44 0.90
21 3 0.06
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (20 bp):
TATTTATACGGATGAACTAC
Found at i:82163227 original size:21 final size:21
Alignment explanation
Indices: 82163203--82163272 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
82163193 TGATTTGAAC
82163203 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
* **
82163224 TCA-TGATATATGTGGCATCTGAAC
1 TCATTGA-GT-TGTGG--TCTGAGT
*
82163248 TCATTGAGTTATGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
82163269 TCAT
1 TCAT
82163273 GATGTATATG
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
20 3 0.08
21 13 0.35
22 5 0.14
23 4 0.11
24 9 0.24
25 3 0.08
ACGTcount: A:0.21, C:0.13, G:0.26, T:0.40
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:82166924 original size:48 final size:48
Alignment explanation
Indices: 82166869--82167249 Score: 356
Period size: 48 Copynumber: 7.9 Consensus size: 48
82166859 TGGTTGAATT
* * * *
82166869 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAG
* * * * * *
82166917 GCCGATGCCATGTCCCAGACATGGTCTTACAGTAGCTCTTATCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAG
* * * * ** *
82166965 GCCGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTCGTCTTAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAG
* * *
82167013 GTCGATACCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCGAG
* * * * *
82167061 G-TGAATGCCATATCCCAGACATGGTCTTACACTGGCTCTCACAAC-ATC
1 GCCG-ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGA-G
* * * *
82167109 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAAC-ATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGA-G
* * * * *
82167157 GCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCACATCGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAG
* * * *
82167205 GCCAATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC
82167250 ACCCGAATGG
Statistics
Matches: 283, Mismatches: 44, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
47 2 0.01
48 278 0.98
49 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAG
Found at i:82167136 original size:144 final size:144
Alignment explanation
Indices: 82166866--82167240 Score: 456
Period size: 144 Copynumber: 2.6 Consensus size: 144
82166856 AAGTGGTTGA
* * *
82166866 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCG-ATGCCATGT
1 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGG-CGAATGCCATGT
* * * *
82166930 CCCAGACATGGTCTTACAGTAGCTCTTATCTCAATGCCGATGCCATGTCCCAGACATGGTCTTAC
65 CCCAGACATGGTCTTACACTGGCTCTCATCACAATGCCGATGCCATGTCCCAGACATGGTCTTAC
* * *
82166995 ATTAGCTCTCGTCTTA-
130 ACTAGCTCTC-AC-AAC
* * * * * *
82167011 A-TGTCGATACCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGTGAATGCCATAT
1 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-ATCGTGGCGAATGCCATGT
*
82167074 CCCAGACATGGTCTTACACTGGCTCTCA-CA-ACATCGCTGATGCCATGTCCCAGACATGGTCTT
65 CCCAGACATGGTCTTACACTGGCTCTCATCACA-AT-GCCGATGCCATGTCCCAGACATGGTCTT
*
82167137 ACACTGGCTCTCACAAC
128 ACACTAGCTCTCACAAC
* * *
82167154 ATTGCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCACATCGTGGCCAATGCCATGTC
1 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCGAATGCCATGTC
*
82167219 CTAGACATGGTCTTACACTGGC
66 CCAGACATGGTCTTACACTGGC
82167241 ACACATATCA
Statistics
Matches: 195, Mismatches: 28, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
142 2 0.01
143 8 0.04
144 183 0.94
145 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (144 bp):
ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCGAATGCCATGTC
CCAGACATGGTCTTACACTGGCTCTCATCACAATGCCGATGCCATGTCCCAGACATGGTCTTACA
CTAGCTCTCACAAC
Found at i:82168363 original size:10 final size:10
Alignment explanation
Indices: 82168350--82168388 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
82168340 ATATGTGAAT
82168350 ATATCATGGC
1 ATATCATGGC
82168360 ATATCATGTGC
1 ATATCATG-GC
*
82168371 ATATTATGGC
1 ATATCATGGC
82168381 ATATCATG
1 ATATCATG
82168389 TACAGAAGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (10 bp):
ATATCATGGC
Found at i:82168379 original size:21 final size:21
Alignment explanation
Indices: 82168350--82168389 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
82168340 ATATGTGAAT
82168350 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
*
82168371 ATATTATGGCATATCATGT
1 ATATCATGGCATATCATGT
82168390 ACAGAAGCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:82168457 original size:25 final size:26
Alignment explanation
Indices: 82168429--82168481 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
82168419 ATAACATAAC
* *
82168429 CCTAGGGGT-ATAATGGTCATTTTCA
1 CCTAGGGGTAAAAAAGGTCATTTTCA
82168454 CCTAGGGGTAAAAAAAGGTCATTTTCA
1 CCTAGGGGT-AAAAAAGGTCATTTTCA
82168481 C
1 C
82168482 ATTATAAGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 9 0.38
27 15 0.62
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CCTAGGGGTAAAAAAGGTCATTTTCA
Found at i:82172618 original size:25 final size:25
Alignment explanation
Indices: 82172584--82172634 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
82172574 TATCAGAGAG
82172584 TATGAGGTTACATGGAATTCCTACA
1 TATGAGGTTACATGGAATTCCTACA
82172609 TATGAGGTTACATGGAATTCCTACA
1 TATGAGGTTACATGGAATTCCTACA
82172634 T
1 T
82172635 CCATTATTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (25 bp):
TATGAGGTTACATGGAATTCCTACA
Found at i:82174614 original size:21 final size:21
Alignment explanation
Indices: 82174560--82174619 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 21
82174550 TTTACTTTTT
* *
82174560 GTTTAACTCTCATGAGCTTCA
1 GTTTAACTCTTATGAGTTTCA
*
82174581 G-TTAACTCATATGAGTTTCA
1 GTTTAACTCTTATGAGTTTCA
* *
82174601 GTTTAACCCTTATGGGTTT
1 GTTTAACTCTTATGAGTTT
82174620 TCGTTCAGCT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 17 0.53
21 15 0.47
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.42
Consensus pattern (21 bp):
GTTTAACTCTTATGAGTTTCA
Found at i:82176293 original size:29 final size:28
Alignment explanation
Indices: 82176257--82176334 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
82176247 TCATGAGATT
82176257 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
82176287 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
82176314 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
82176335 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:82176552 original size:174 final size:174
Alignment explanation
Indices: 82176290--82176614 Score: 587
Period size: 174 Copynumber: 1.9 Consensus size: 174
82176280 TTGTACAGCA
*
82176290 CTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATGTGT
1 CTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGT
* * *
82176355 GCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGATTT
66 GCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGATGCGACCTTACCGAGTCAATTT
82176420 TGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGCC
131 TGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGCC
* *
82176464 CTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGT
1 CTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGT
*
82176529 GCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGATGCGACTTTACCGAGTCAATTT
66 GCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGATGCGACCTTACCGAGTCAATTT
82176594 TGGACAGCGGAAAAGGTAAGT
131 TGGACAGCGGAAAAGGTAAGT
82176615 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 144 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
CTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGT
GCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGATGCGACCTTACCGAGTCAATTT
TGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGCC
Found at i:82179850 original size:55 final size:54
Alignment explanation
Indices: 82179709--82179892 Score: 147
Period size: 55 Copynumber: 3.4 Consensus size: 54
82179699 ATTAGGGTTT
* * * **
82179709 AAAGATACCAAGTAAGACGATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAAGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTACTACAAGGC
* * * * * * *
82179763 AAGGAAATCATGTAAGACCATGTCTAGACATGGCATTGATAAGCTACTATAAGGC
1 AAAGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAG-TACTACAAGGC
* * * * * * *
82179818 AAAGATCCCATGTAAGACCATGGCGAGGCATGGCAATGGTGAGTTCATA-AA-GC
1 AAAGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTAC-TACAAGGC
* *
82179871 AAGGATACCACGTAAGACCATG
1 AAAGATACCATGTAAGACCATG
82179893 TAAAGACATG
Statistics
Matches: 102, Mismatches: 26, Indels: 5
0.77 0.20 0.04
Matches are distributed among these distances:
53 21 0.21
54 38 0.37
55 43 0.42
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (54 bp):
AAAGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTACTACAAGGC
Found at i:82184268 original size:31 final size:31
Alignment explanation
Indices: 82184230--82184293 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
82184220 CCTTTTCATA
82184230 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
** * *
82184261 TTTCATATTTCATATTATTGGGCCGAAGTCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
82184292 TT
1 TT
82184294 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.20, G:0.16, T:0.41
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:82184562 original size:23 final size:23
Alignment explanation
Indices: 82184508--82184626 Score: 202
Period size: 23 Copynumber: 5.1 Consensus size: 23
82184498 CCTAGCCTCT
*
82184508 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
82184531 TTTTAATAACAGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
82184555 TTTAATAACTGGGGTATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
82184578 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
82184601 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
82184624 TTT
1 TTT
82184627 TACACTTCCT
Statistics
Matches: 90, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
23 69 0.77
24 21 0.23
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:82184691 original size:11 final size:11
Alignment explanation
Indices: 82184675--82184732 Score: 61
Period size: 11 Copynumber: 5.6 Consensus size: 11
82184665 ATTTATAATT
82184675 ATATCATGTGC
1 ATATCATGTGC
*
82184686 ATATCA--TAC
1 ATATCATGTGC
82184695 ATATCATGTGC
1 ATATCATGTGC
*
82184706 ATATCA--TAC
1 ATATCATGTGC
*
82184715 ATGTCATGTGC
1 ATATCATGTGC
82184726 ATATCAT
1 ATATCAT
82184733 ACATACCATG
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
9 15 0.41
11 22 0.59
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
ATATCATGTGC
Found at i:82184700 original size:20 final size:20
Alignment explanation
Indices: 82184675--82184743 Score: 120
Period size: 20 Copynumber: 3.5 Consensus size: 20
82184665 ATTTATAATT
82184675 ATATCATGTGCATATCATAC
1 ATATCATGTGCATATCATAC
82184695 ATATCATGTGCATATCATAC
1 ATATCATGTGCATATCATAC
*
82184715 ATGTCATGTGCATATCATAC
1 ATATCATGTGCATATCATAC
*
82184735 ATACCATGT
1 ATATCATGT
82184744 TTATCAAAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
ATATCATGTGCATATCATAC
Found at i:82184812 original size:25 final size:25
Alignment explanation
Indices: 82184780--82184827 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
82184770 ATACATAAAC
* *
82184780 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
82184805 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
82184828 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:82189269 original size:55 final size:53
Alignment explanation
Indices: 82189195--82189347 Score: 135
Period size: 55 Copynumber: 2.8 Consensus size: 53
82189185 GGTAAGTTTT
* * * * **
82189195 ATAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCTTTGATAAACTAC
1 ATAAGGCAAAGATACCATGTAAGACCATATCAAGACATGGCAATGATAAACT-C
* * * * * *
82189249 TATAAGGCAAAGATCCCATGTAAGACCATACCAAGGCATGGCAATGGTGAGCTC
1 -ATAAGGCAAAGATACCATGTAAGACCATATCAAGACATGGCAATGATAAACTC
* * * * *
82189303 ATAAGGTAAGGATACCATGTAAGACCATCTCAAGACTTGGTAATG
1 ATAAGGCAAAGATACCATGTAAGACCATATCAAGACATGGCAATG
82189348 GTAAGTTTAA
Statistics
Matches: 78, Mismatches: 20, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
53 37 0.47
54 1 0.01
55 40 0.51
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (53 bp):
ATAAGGCAAAGATACCATGTAAGACCATATCAAGACATGGCAATGATAAACTC
Found at i:82194695 original size:6 final size:6
Alignment explanation
Indices: 82194684--82194726 Score: 52
Period size: 6 Copynumber: 7.0 Consensus size: 6
82194674 AATTAGGTAA
*
82194684 CAGAAT CAGAAT CAGTAT CAGGTAA- CAGAAT CAGAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
82194727 GTGAATGCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
5 2 0.06
6 26 0.81
7 3 0.09
8 1 0.03
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.19
Consensus pattern (6 bp):
CAGAAT
Found at i:82195297 original size:27 final size:27
Alignment explanation
Indices: 82195267--82195409 Score: 103
Period size: 27 Copynumber: 5.3 Consensus size: 27
82195257 CCCCACAAGG
*
82195267 GTATCTCGATAATTCTACCTTACAGGA
1 GTATTTCGATAATTCTACCTTACAGGA
* *
82195294 GTATTTC-AGTAATTCTACCCTACAGGG
1 GTATTTCGA-TAATTCTACCTTACAGGA
* * * *
82195321 GTATTTTGGTATTTCTACCTTACAGGG
1 GTATTTCGATAATTCTACCTTACAGGA
* * * * * *
82195348 GCATTTCGGTATTTCTGCCCTATA-GA
1 GTATTTCGATAATTCTACCTTACAGGA
* *
82195374 GGTATTTTGATATTTCTACCTTACAAGG-
1 -GTATTTCGATAATTCTACCTTAC-AGGA
82195402 GTATTTCG
1 GTATTTCG
82195410 GTGATTTTGT
Statistics
Matches: 91, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
26 2 0.02
27 87 0.96
28 1 0.01
29 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (27 bp):
GTATTTCGATAATTCTACCTTACAGGA
Found at i:82195354 original size:54 final size:54
Alignment explanation
Indices: 82195248--82195408 Score: 180
Period size: 54 Copynumber: 3.0 Consensus size: 54
82195238 GTGTAAAACG
* * * * * *
82195248 GTAATTTTACCCCACA-AGGGTATCTCGATAATTCTACCTTACAGGAGTATTTCA
1 GTAATTCTACCCTACAGA-GGTATTTTGATATTTCTACCTTACAGGGGTATTTCA
* * * *
82195302 GTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACCTTACAGGGGCATTTCG
1 GTAATTCTACCCTACAGAGGTATTTTGATATTTCTACCTTACAGGGGTATTTCA
* * * *
82195356 GTATTTCTGCCCTATAGAGGTATTTTGATATTTCTACCTTACAAGGGTATTTC
1 GTAATTCTACCCTACAGAGGTATTTTGATATTTCTACCTTACAGGGGTATTTC
82195409 GGTGATTTTG
Statistics
Matches: 89, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
54 89 1.00
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (54 bp):
GTAATTCTACCCTACAGAGGTATTTTGATATTTCTACCTTACAGGGGTATTTCA
Found at i:82195640 original size:54 final size:53
Alignment explanation
Indices: 82195519--82195712 Score: 255
Period size: 54 Copynumber: 3.6 Consensus size: 53
82195509 GGTATTTCAG
* * *
82195519 TAATTTCACAAATC-AGTGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGA
1 TAATTTTACAAACCAAG-GGTATTTTGGTAATTTTACAAACTGGGGTATTTTGA
* *
82195572 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTTGGGGTATTTTGG
1 TAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAC-TGGGGTATTTTGA
* * * *
82195626 TAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTCA
1 TAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAA-CTGGGGTATTTTGA
**
82195680 TAATTTTGTAAACCAAGGGTATTTTGGTAATTT
1 TAATTTTACAAACCAAGGGTATTTTGGTAATTT
82195713 GGTAAACTAA
Statistics
Matches: 125, Mismatches: 13, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
53 35 0.28
54 89 0.71
55 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.41
Consensus pattern (53 bp):
TAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTGGGGTATTTTGA
Found at i:82195675 original size:81 final size:80
Alignment explanation
Indices: 82195451--82195712 Score: 280
Period size: 81 Copynumber: 3.2 Consensus size: 80
82195441 TTCTGTAAAT
* * * * ***
82195451 CAAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCGATAATTTTACAGGTC-GAGGGTA-T
1 CAAGGGTATTTTGGTAATTTTACAA-ACAAGGGTATTTTGATAATTTTACAAACCAG-GGGTATT
* *
82195514 TTCAGTAATTTCACAAAT
64 TTCA-TAATTTTACAAAC
*
82195532 C-AGTGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGATAATTTTACAAACCAGGGGTATTT
1 CAAG-GGTATTTTGGTAATTTTACAAACAAGGGTATTTTGATAATTTTACAAACCAGGGGTATTT
**
82195596 TGGTAATTTTACAAAC
65 TCATAATTTTACAAAC
*** *
82195612 TTGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTT-AGTAATTTTACAAACCAGGGGTATT
1 CAAGGGTATTTTGGTAATTTTACAAA-CAAGGGTATTTTGA-TAATTTTACAAACCAGGGGTATT
**
82195676 TTCATAATTTTGTAAAC
64 TTCATAATTTTACAAAC
82195693 CAAGGGTATTTTGGTAATTT
1 CAAGGGTATTTTGGTAATTT
82195713 GGTAAACTAA
Statistics
Matches: 153, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
80 63 0.41
81 90 0.59
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (80 bp):
CAAGGGTATTTTGGTAATTTTACAAACAAGGGTATTTTGATAATTTTACAAACCAGGGGTATTTT
CATAATTTTACAAAC
Found at i:82195719 original size:27 final size:27
Alignment explanation
Indices: 82195436--82195712 Score: 216
Period size: 27 Copynumber: 10.3 Consensus size: 27
82195426 AGGGTAAAAC
* * * *
82195436 GGTAATTCTGTAAATCAAGGGTACTTT
1 GGTAATTTTATAAACCAAGGGTATTTT
* ** * *
82195463 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTATAAACCAAGGGTATTTT
* * *** * *
82195490 GATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTATAAACCAAGGGTATTTT
* * * *
82195517 AGTAATTTCACAAATC-AGTGGTATTTT
1 GGTAATTTTATAAACCAAG-GGTATTTT
* *
82195544 GGTAATTTTACAAA-CTAGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTT
* * *
82195570 GATAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTT
* ***
82195597 GGTAATTTTACAAACTTGGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTT
82195624 GGTAATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTT
* * *
82195651 AGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTT
** *
82195678 CATAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTT
82195705 GGTAATTT
1 GGTAATTT
82195713 GGTAAACTAA
Statistics
Matches: 210, Mismatches: 37, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
26 24 0.11
27 186 0.89
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
GGTAATTTTATAAACCAAGGGTATTTT
Found at i:82195727 original size:26 final size:27
Alignment explanation
Indices: 82195634--82195728 Score: 68
Period size: 27 Copynumber: 3.6 Consensus size: 27
82195624 GGTAATTTTA
* **
82195634 TAAACCAAGGGTATTTT-AGTAATTTTA
1 TAAACCAAGAGTATTTTCA-TAATTTGG
* * * *
82195661 CAAACCAGGGGTATTTTCATAATTTTG
1 TAAACCAAGAGTATTTTCATAATTTGG
* **
82195688 TAAACCAAGGGTATTTTGGTAATTTGG
1 TAAACCAAGAGTATTTTCATAATTTGG
*
82195715 TAAACTAA-AGTATT
1 TAAACCAAGAGTATT
82195729 CTAAATAGGG
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
26 5 0.09
27 51 0.89
28 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (27 bp):
TAAACCAAGAGTATTTTCATAATTTGG
Done.