Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 242 of 373
Found at i:82205342 original size:40 final size:40
Alignment explanation
Indices: 82205282--82205379 Score: 160
Period size: 40 Copynumber: 2.4 Consensus size: 40
82205272 CTCACACTAG
* *
82205282 GTGCCAATACATAGCTGAAGCTATCTTGAATCGCACACGAA
1 GTGCC-ATACATAGCCGAAGCTATCTTGAACCGCACACGAA
*
82205323 GTGCCATACATAGCCGAAGCTATCTTGAACCGCACACTAA
1 GTGCCATACATAGCCGAAGCTATCTTGAACCGCACACGAA
82205363 GTGCCATACATAGCCGA
1 GTGCCATACATAGCCGA
82205380 GTTGTTGTCA
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
40 49 0.91
41 5 0.09
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.20
Consensus pattern (40 bp):
GTGCCATACATAGCCGAAGCTATCTTGAACCGCACACGAA
Found at i:82207192 original size:16 final size:17
Alignment explanation
Indices: 82207161--82207193 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
82207151 TTCATAAGCA
82207161 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
82207178 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
82207194 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:82207623 original size:92 final size:92
Alignment explanation
Indices: 82207466--82207686 Score: 307
Period size: 92 Copynumber: 2.4 Consensus size: 92
82207456 TTTGACATGA
* * * * * *
82207466 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATATTGCCATGGTATCTTTCAAC
** *
82207531 CATGGTCTTATTCATTTCATGTCACGC
66 CATGGTCTTACACATTTCATATCACGC
* *
82207558 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATATTTCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATATTGCCATGGTATCTTTCAAC
* *
82207623 CATGGTCTTACACATTTCATATCAGGT
66 CATGGTCTTACACATTTCATATCACGC
* *
82207650 TGCCATGGTACCTTTCAACCATGGTCTTACACATTTC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTC
82207687 ATATCAGAGA
Statistics
Matches: 113, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
92 113 1.00
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.40
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATATTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACGC
Found at i:82207686 original size:46 final size:46
Alignment explanation
Indices: 82207466--82207693 Score: 278
Period size: 46 Copynumber: 5.0 Consensus size: 46
82207456 TTTGACATGA
* * * *
82207466 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCAGGT
* * *
82207512 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGT
* ** **
82207558 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGT
* * *
82207604 TTCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGT
* * *
82207650 TGCCATGGTACCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAG
82207694 AGATCACACT
Statistics
Matches: 160, Mismatches: 21, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
45 4 0.03
46 156 0.98
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGT
Found at i:82210182 original size:21 final size:21
Alignment explanation
Indices: 82210158--82210204 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
82210148 AAAATCTTAT
82210158 AATATAATTATATAAT-TAATA
1 AATAT-ATTATATAATATAATA
* *
82210179 AATATCTTTTATAATATAATA
1 AATATATTATATAATATAATA
82210200 AATAT
1 AATAT
82210205 CTATTTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
AATATATTATATAATATAATA
Found at i:82210205 original size:21 final size:21
Alignment explanation
Indices: 82210168--82210215 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
82210158 AATATAATTA
*
82210168 TATAAT-TAATAAATATCTTT
1 TATAATATAATAAATATCTAT
82210188 TATAATATAATAAATATCTAT
1 TATAATATAATAAATATCTAT
82210209 T-TAATAT
1 TATAATAT
82210216 CTAATACATG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (21 bp):
TATAATATAATAAATATCTAT
Found at i:82211381 original size:73 final size:73
Alignment explanation
Indices: 82211262--82211408 Score: 258
Period size: 73 Copynumber: 2.0 Consensus size: 73
82211252 TAGTGTTACC
*
82211262 TTATTTTTCTTTCATCGGGTCCTTTCCTTTTACTCTTCTTGGGGTCGATTGTAGAAAAGAATCTT
1 TTATTTTTCTTTCATCGGGTCCTTTCCTTTTACTATTCTTGGGGTCGATTGTAGAAAAGAATCTT
82211327 TCGGGGTT
66 TCGGGGTT
* * *
82211335 TTATTTTTCTTTCATCGGGTTCTTTCGTTTTACTATTCTTGGGGTCGATTGTAGCAAAGAATCTT
1 TTATTTTTCTTTCATCGGGTCCTTTCCTTTTACTATTCTTGGGGTCGATTGTAGAAAAGAATCTT
82211400 TCGGGGTT
66 TCGGGGTT
82211408 T
1 T
82211409 GACAATATTT
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 70 1.00
ACGTcount: A:0.15, C:0.16, G:0.21, T:0.48
Consensus pattern (73 bp):
TTATTTTTCTTTCATCGGGTCCTTTCCTTTTACTATTCTTGGGGTCGATTGTAGAAAAGAATCTT
TCGGGGTT
Found at i:82212890 original size:34 final size:33
Alignment explanation
Indices: 82212830--82212901 Score: 85
Period size: 34 Copynumber: 2.2 Consensus size: 33
82212820 TGTTACCGAC
* *
82212830 ACTGAAATGGGCTAGGTCCCACACTGATACTGA
1 ACTGTAATGGGCTAGGTCCCACACTGAAACTGA
82212863 TACTGTAATGGGCTAAGG-CCCTA-ACTGAAACTGA
1 -ACTGTAATGGGCT-AGGTCCC-ACACTGAAACTGA
82212897 ACTGT
1 ACTGT
82212902 TACTGATACG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
33 5 0.15
34 25 0.74
35 4 0.12
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.24
Consensus pattern (33 bp):
ACTGTAATGGGCTAGGTCCCACACTGAAACTGA
Found at i:82216191 original size:34 final size:33
Alignment explanation
Indices: 82216148--82216214 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 33
82216138 CCGACACTAA
*
82216148 AATGGGCTAAGGCCC-ACACTGATACTGATACTGT
1 AATGGGCTAAGGCCCTA-ACTGAAACTGA-ACTGT
82216182 AATGGGCTAAGGCCCTAACTGAAACTGAACTGT
1 AATGGGCTAAGGCCCTAACTGAAACTGAACTGT
82216215 TACTGACACA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
33 5 0.16
34 25 0.81
35 1 0.03
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.22
Consensus pattern (33 bp):
AATGGGCTAAGGCCCTAACTGAAACTGAACTGT
Found at i:82217324 original size:48 final size:48
Alignment explanation
Indices: 82217268--82217392 Score: 189
Period size: 48 Copynumber: 2.6 Consensus size: 48
82217258 CTCACACATT
* * * *
82217268 AAGTGCTAATATTATGGCCCGAAGCCAACTCAATATATCTCGCACCCG
1 AAGTGCTAATATCATGGCCAGAAGCCAAATCAATATATCTCGCACCCA
82217316 AAGTGCTAATATCATGGCCTA-AAGCCAAATCAATATATCTCGCACCCA
1 AAGTGCTAATATCATGGCC-AGAAGCCAAATCAATATATCTCGCACCCA
*
82217364 AAGTGCTAATATCATGGCTAGAAGCCAAA
1 AAGTGCTAATATCATGGCCAGAAGCCAAA
82217393 CCACTGAAGT
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
47 1 0.01
48 69 0.99
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.22
Consensus pattern (48 bp):
AAGTGCTAATATCATGGCCAGAAGCCAAATCAATATATCTCGCACCCA
Found at i:82217391 original size:27 final size:27
Alignment explanation
Indices: 82217316--82217392 Score: 69
Period size: 27 Copynumber: 3.1 Consensus size: 27
82217306 CTCGCACCCG
82217316 AAGTGCTAATATCATGGCCTA-AAGCCA
1 AAGTGCTAATATCATGG-CTAGAAGCCA
* * *
82217343 AA-T-C-AATAT-AT--CTCGCACCCA
1 AAGTGCTAATATCATGGCTAGAAGCCA
82217364 AAGTGCTAATATCATGGCTAGAAGCCA
1 AAGTGCTAATATCATGGCTAGAAGCCA
82217391 AA
1 AA
82217393 CCACTGAAGT
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
20 2 0.05
21 6 0.16
22 1 0.03
23 3 0.08
24 10 0.27
25 3 0.08
26 1 0.03
27 11 0.30
ACGTcount: A:0.39, C:0.23, G:0.16, T:0.22
Consensus pattern (27 bp):
AAGTGCTAATATCATGGCTAGAAGCCA
Found at i:82220623 original size:12 final size:12
Alignment explanation
Indices: 82220606--82220630 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82220596 ACATGCCCGC
82220606 GTGCTAGGCCGT
1 GTGCTAGGCCGT
82220618 GTGCTAGGCCGT
1 GTGCTAGGCCGT
82220630 G
1 G
82220631 CCAACCCTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.24, G:0.44, T:0.24
Consensus pattern (12 bp):
GTGCTAGGCCGT
Found at i:82233255 original size:25 final size:25
Alignment explanation
Indices: 82233208--82233255 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
82233198 TTATAACATG
* * * *
82233208 AAAATGACCGTTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
82233233 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
82233256 GTTTATGTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:82233339 original size:11 final size:11
Alignment explanation
Indices: 82233303--82233358 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
82233293 CATGGTATGT
82233303 ATGATATGCAC
1 ATGATATGCAC
* *
82233314 ATGACATG--T
1 ATGATATGCAC
82233323 ATGATATGCAC
1 ATGATATGCAC
*
82233334 ATGATATG--T
1 ATGATATGCAC
82233343 ATGATATGCAC
1 ATGATATGCAC
82233354 ATGAT
1 ATGAT
82233359 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:82233358 original size:20 final size:20
Alignment explanation
Indices: 82233292--82233358 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
82233282 ATTTTGATAA
*
82233292 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
82233312 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
82233332 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
82233352 ACATGAT
1 ACATGAT
82233359 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:82233437 original size:23 final size:23
Alignment explanation
Indices: 82233407--82233555 Score: 167
Period size: 23 Copynumber: 6.4 Consensus size: 23
82233397 GGAGGAAGTG
82233407 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* * *
82233430 TAATGGGCTTATGCCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
82233453 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* * *
82233477 CAAAAGGGCTTACGACCCAATTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
82233501 TAAAGGGCTTATGCCTCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
82233524 AAAAGGG-TTTTG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
82233546 AAAAGAGGCT
1 AAAAG-GGCT
82233556 AGGCCTCTAG
Statistics
Matches: 105, Mismatches: 17, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
21 7 0.07
22 10 0.10
23 46 0.44
24 42 0.40
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:82233476 original size:47 final size:45
Alignment explanation
Indices: 82233407--82233555 Score: 174
Period size: 47 Copynumber: 3.2 Consensus size: 45
82233397 GGAGGAAGTG
* *
82233407 AAAAGGGCTTATGCCCCAGTTATTAATGGGCTTATGCCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCC-AGTTAT
* *
82233453 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGACCCAATTAT
1 -AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATG-CCCAGTTAT
* * *
82233501 TAAAGGGCTTATGCCTCAGTTATAAAAGGG-TTTTGCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCAGTTA-T
82233546 AAAAGAGGCT
1 AAAAG-GGCT
82233556 AGGCCTCTAG
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
44 7 0.08
45 8 0.09
46 11 0.12
47 44 0.50
48 15 0.17
49 3 0.03
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Consensus pattern (45 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCAGTTAT
Found at i:82233798 original size:31 final size:31
Alignment explanation
Indices: 82233763--82233826 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
82233753 CGTTTACAGT
*
82233763 AAAGGCTTCGGCCCAATAATATGAAATTTGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
* **
82233794 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
82233825 AA
1 AA
82233827 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATAATATGAAATATGA
Found at i:82241357 original size:57 final size:57
Alignment explanation
Indices: 82241269--82241389 Score: 224
Period size: 57 Copynumber: 2.1 Consensus size: 57
82241259 TAAGAACTTC
* *
82241269 AAATCATTTGTTTCTACATTCACAGCTTTCTAGCTACTCGCATCACAGTTACAAGAA
1 AAATCATTTATTTCTACATTCACAGCTTTCTAGCTACTCGCATAACAGTTACAAGAA
82241326 AAATCATTTATTTCTACATTCACAGCTTTCTAGCTACTCGCATAACAGTTACAAGAA
1 AAATCATTTATTTCTACATTCACAGCTTTCTAGCTACTCGCATAACAGTTACAAGAA
82241383 AAATCAT
1 AAATCAT
82241390 ATCTCGAGTT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 62 1.00
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (57 bp):
AAATCATTTATTTCTACATTCACAGCTTTCTAGCTACTCGCATAACAGTTACAAGAA
Found at i:82242671 original size:93 final size:93
Alignment explanation
Indices: 82242563--82242732 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
82242553 CGCCCCTAAG
* * *
82242563 TGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
82242628 GCGAGTTCGGATTCCTAGTTACATCTCA
66 ACGAGTTCGGATTCCTAGTTACATCTCA
* * *
82242656 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
82242721 ACGAGTTCGGAT
66 ACGAGTTCGGAT
82242733 GCTCAACCAT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATTCCTAGTTACATCTCA
Found at i:82242721 original size:46 final size:46
Alignment explanation
Indices: 82242559--82242731 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
82242549 TACCCGCCCC
* * * *
82242559 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
82242605 TAAGTGAACTCAGACTCAACTCAGCGAGTTCGG--ATTC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA
*
82242651 TCTCA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
82242698 TAGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82242732 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 1 0.01
46 62 0.58
47 30 0.28
48 2 0.02
49 5 0.05
50 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:82244694 original size:30 final size:30
Alignment explanation
Indices: 82244650--82244738 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
82244640 CAAAGATAAC
82244650 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
82244679 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
82244709 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
82244739 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:82244698 original size:15 final size:15
Alignment explanation
Indices: 82244650--82244729 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
82244640 CAAAGATAAC
*
82244650 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
82244664 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
82244679 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
82244694 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
82244709 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
82244724 AAGAAA
1 AAGAAA
82244730 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:82244738 original size:15 final size:15
Alignment explanation
Indices: 82244661--82244738 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
82244651 AGAAAACCGA
82244661 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
82244676 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
82244690 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
82244705 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
82244721 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
82244736 ATA
1 ATA
82244739 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:82247733 original size:46 final size:46
Alignment explanation
Indices: 82247666--82247837 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
82247656 AACCCGCCCC
* *
82247666 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
* * *
82247712 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCA
* * * *
82247760 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
*
82247805 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
82247838 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 1 0.01
46 59 0.57
47 27 0.26
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
Found at i:82247778 original size:93 final size:93
Alignment explanation
Indices: 82247671--82247841 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
82247661 GCCCCTAAGT
* * *
82247671 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
82247736 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
82247764 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
82247829 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82247842 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82248782 original size:40 final size:40
Alignment explanation
Indices: 82248678--82248880 Score: 261
Period size: 40 Copynumber: 5.1 Consensus size: 40
82248668 CGGATGATAA
*
82248678 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TAAGTTACTATA-T
*
82248718 CCGGGCTAAG-CCTGAAGGCATTTGTGTAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTAAGTTACTATAT
*** *
82248757 CCGGGCTAAGTCCCGAAGGCATTTGTGCGGGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTAAGTTACTATAT
** *
82248797 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTAAGTTACTATAT
*
82248837 CCGGGCTAAGTCCCGAAGGCATTTGAGTAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTAAGTTA-CTATAT
82248877 CCGG
1 CCGG
82248881 TTAAATTCCG
Statistics
Matches: 147, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 35 0.24
40 111 0.76
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTAAGTTACTATAT
Found at i:82248892 original size:119 final size:119
Alignment explanation
Indices: 82248674--82248894 Score: 322
Period size: 119 Copynumber: 1.9 Consensus size: 119
82248664 TATTCGGATG
* * *
82248674 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCTGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* *
82248739 TTGTGTAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGGGTTACT
66 TTGAGTAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGGGTTACT
*
82248793 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
* *
82248857 ATTTGAGTAAG-TAGCTATATCC-GGTTAAATTCCGAAGG
64 ATTTGAGTAAGTTA-CTATATCCGGGCTAAATCCCGAAGG
82248895 TACTTGGTTT
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
118 2 0.02
119 63 0.69
120 26 0.29
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGTAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGGGTTACT
Found at i:82255365 original size:40 final size:40
Alignment explanation
Indices: 82255164--82255351 Score: 272
Period size: 40 Copynumber: 4.7 Consensus size: 40
82255154 TATTCAGATG
* * *
82255164 ATAACCGGGCTAAGTCCCGATGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
82255204 A-ATTCTGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACA
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
82255243 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
82255283 ATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
82255323 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
82255352 AGCAAGTAGC
Statistics
Matches: 133, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 32 0.24
40 101 0.76
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:82258683 original size:14 final size:14
Alignment explanation
Indices: 82258659--82258702 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
82258649 GTATGTATGA
82258659 TATGCACATGACATG
1 TATG-ACATGACATG
*
82258674 TATGACATGATATG
1 TATGACATGACATG
*
82258688 TATGATATGCACATG
1 TATGACATG-ACATG
82258703 ATGTATTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 17 0.68
15 8 0.32
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (14 bp):
TATGACATGACATG
Found at i:82258703 original size:20 final size:20
Alignment explanation
Indices: 82258644--82258704 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 20
82258634 ATTTTGATAA
*
82258644 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
82258664 ACATG--A--CATG-TATG-
1 ACATGATATGTATGATATGC
82258678 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
82258698 ACATGAT
1 ACATGAT
82258705 GTATTCATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
14 5 0.15
15 4 0.12
16 4 0.12
18 4 0.12
19 4 0.12
20 12 0.36
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:82258810 original size:24 final size:23
Alignment explanation
Indices: 82258754--82258904 Score: 194
Period size: 23 Copynumber: 6.4 Consensus size: 23
82258744 GAGGAAGTGA
82258754 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
82258777 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
82258800 CAAAAGGGCTTATGCCCTAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
82258824 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
82258848 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* * * *
82258871 AAAAAGGATTTTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
82258895 AAAAGAGGCT
1 AAAAG-GGCT
82258905 AGGCCTCCAA
Statistics
Matches: 111, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
23 60 0.54
24 48 0.43
25 3 0.03
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:82258870 original size:71 final size:70
Alignment explanation
Indices: 82258754--82258904 Score: 239
Period size: 71 Copynumber: 2.1 Consensus size: 70
82258744 GAGGAAGTGA
* * *
82258754 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT-AAAAAGGATTATGCCCTA
82258819 GTTATC
65 GTTATC
*
82258825 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGATTTTGCCCTAG
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGATTATGCCCTAG
*
82258890 TTATT
66 TTATC
82258895 AAAAGAGGCT
1 AAAAG-GGCT
82258905 AGGCCTCCAA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 25 0.34
71 49 0.66
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (70 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGATTATGCCCTAG
TTATC
Found at i:82259167 original size:31 final size:31
Alignment explanation
Indices: 82259113--82259176 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
82259103 CGTTTACAGT
82259113 AAAGGCTTCGGCCCAGTAATATGAAATT-TGA
1 AAAGGCTTCGGCCCAGTAATATG-AATTATGA
**
82259144 AAAGGCTTCGGCCCAGTTTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAATTATGA
82259175 AA
1 AA
82259177 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 4 0.13
31 26 0.87
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAATTATGA
Found at i:82262627 original size:20 final size:20
Alignment explanation
Indices: 82262602--82262646 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
82262592 AGCACATGTA
*
82262602 TTCATAAAATTTTAGAAATT
1 TTCATAAAATTTTACAAATT
*
82262622 TTCATAAAATTTTACAACTT
1 TTCATAAAATTTTACAAATT
82262642 TTCAT
1 TTCAT
82262647 TTTAGTCCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.40, C:0.11, G:0.02, T:0.47
Consensus pattern (20 bp):
TTCATAAAATTTTACAAATT
Found at i:82268313 original size:40 final size:40
Alignment explanation
Indices: 82268276--82268406 Score: 142
Period size: 40 Copynumber: 3.3 Consensus size: 40
82268266 GCTACTCGTT
*
82268276 CAAATGCCTTCGAGACATAGCCCGG-TTACAGTAACTCGCA
1 CAAATGCCTTCGAGACATAACCCGGATT-CAGTAACTCGCA
* * *
82268316 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGAGACATAACCCGGATTCAGTAACTCGCA
* * * * *
82268356 CCAATGCCTTCG-GGCTTAGCCCGAAATT-AGTAACTCGCA
1 CAAATGCCTTCGAGACATAACCCG-GATTCAGTAACTCGCA
82268395 CAAATGCCTTCG
1 CAAATGCCTTCG
82268407 GATCTTAGTC
Statistics
Matches: 80, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 31 0.39
40 47 0.59
41 2 0.03
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGAGACATAACCCGGATTCAGTAACTCGCA
Found at i:82268401 original size:39 final size:40
Alignment explanation
Indices: 82268305--82268407 Score: 163
Period size: 39 Copynumber: 2.6 Consensus size: 40
82268295 GCCCGGTTAC
* *
82268305 AGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTT
1 AGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAATT
* *
82268345 AGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGAAATT
1 AGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAATT
82268384 AGTAACTCGCACAAATGCCTTCGG
1 AGTAACTCGCACAAATGCCTTCGG
82268408 ATCTTAGTCC
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
39 34 0.59
40 24 0.41
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
AGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAATT
Found at i:82268420 original size:79 final size:80
Alignment explanation
Indices: 82268305--82268458 Score: 206
Period size: 79 Copynumber: 1.9 Consensus size: 80
82268295 GCCCGGTTAC
* * *
82268305 AGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACCAATGCCTTCGG
1 AGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCA-CAAAGCCTTCGG
82268369 G-CTTAGCCCGAAATT
65 GACTTAGCCCGAAATT
** * *
82268384 AGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGG
1 AGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
82268448 GACTTAGCCCG
65 GACTTAGCCCG
82268459 GACATCATTC
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
78 3 0.05
79 49 0.75
80 13 0.20
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
AGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGG
ACTTAGCCCGAAATT
Found at i:82288061 original size:27 final size:27
Alignment explanation
Indices: 82288030--82288207 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
82288020 TAAATTGTAC
82288030 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
82288057 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
82288083 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
82288111 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
82288139 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
82288166 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
82288193 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82288208 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:82288144 original size:82 final size:81
Alignment explanation
Indices: 82288031--82288186 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
82288021 AAATTGTACA
* *
82288031 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
82288095 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
82288112 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
82288177 TGCGAGTTGA
65 TGCGAATTGA
82288187 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82288198 original size:82 final size:81
Alignment explanation
Indices: 82288027--82288207 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
82288017 GATTAAATTG
* *
82288027 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
82288092 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
82288108 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
82288172 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
82288190 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
82288208 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:82302427 original size:6 final size:6
Alignment explanation
Indices: 82302397--82302521 Score: 53
Period size: 6 Copynumber: 20.3 Consensus size: 6
82302387 AAGAAACATT
* * *
82302397 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCA-A GATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA -ATCAGA AT--CAGA
* * * * * *
82302446 ATCAGA ACCAGG ATCAGA ATTAGGTG AT-AGA ATTAGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA
*
82302495 ATCAGGTA AT-AGA ATCAAA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
82302522 ATGAATGCCA
Statistics
Matches: 88, Mismatches: 18, Indels: 26
0.67 0.14 0.20
Matches are distributed among these distances:
5 8 0.09
6 67 0.76
7 8 0.09
8 5 0.06
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:82302478 original size:31 final size:31
Alignment explanation
Indices: 82302418--82302521 Score: 102
Period size: 31 Copynumber: 3.4 Consensus size: 31
82302408 AATCAAAATG
* *
82302418 AGAATCAGAATCA-AGATCAGGTGACAGAATC
1 AGAACCAGAATCAGA-ATCAGGTGATAGAATC
* * *
82302449 AGAACCAGGATCAGAATTAGGTGATAGAATT
1 AGAACCAGAATCAGAATCAGGTGATAGAATC
* * *
82302480 AGAATCAGAATCAGTATCAGGTAATAGAATC
1 AGAACCAGAATCAGAATCAGGTGATAGAATC
* *
82302511 AAAATCAGAAT
1 AGAACCAGAAT
82302522 ATGAATGCCA
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
31 59 0.98
32 1 0.02
ACGTcount: A:0.46, C:0.12, G:0.21, T:0.20
Consensus pattern (31 bp):
AGAACCAGAATCAGAATCAGGTGATAGAATC
Found at i:82303060 original size:27 final size:27
Alignment explanation
Indices: 82303030--82303438 Score: 498
Period size: 27 Copynumber: 15.2 Consensus size: 27
82303020 AACACCCTAG
* * *
82303030 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * *
82303057 GGGTAAAACAGTAATTTTATAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * * *
82303084 GGGTAAAACAGTAATTTTGTTAGTCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * *
82303111 GCGTAAAACAGTAATTCTGTAAATTGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
82303138 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
*
82303165 GGGTAAAATAATAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * *
82303192 GGGTAAAACAGTAATTCTATCAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
*
82303219 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
82303246 GGGTAAAATAATAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
*
82303273 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* **
82303300 GGGTAAAATAGTAATTCCGTAAATTAA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
82303327 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
82303354 GGGTAAAAT-GATAATTTTGTAAATTGA
1 GGGTAAAATAG-TAATTCTGTAAATCGA
*
82303381 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * * *
82303408 GGGT-AAACAGTAATTTTTTAATTCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
82303434 GGGTA
1 GGGTA
82303439 CTTTGATAAT
Statistics
Matches: 335, Mismatches: 44, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
26 24 0.07
27 310 0.93
28 1 0.00
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (27 bp):
GGGTAAAATAGTAATTCTGTAAATCGA
Found at i:82303460 original size:27 final size:26
Alignment explanation
Indices: 82303430--82303563 Score: 135
Period size: 27 Copynumber: 5.0 Consensus size: 26
82303420 ATTTTTTAAT
*
82303430 TCGAGGGTACTTTGATAATTTTACAAG
1 TCGAGGGTA-TTTGATAATTTTACAAA
*
82303457 TCGAGGGTATTTTAGTAATTTTACAAA
1 TCGAGGGTATTTGA-TAATTTTACAAA
*
82303484 -CTGAGGGTATTTCAGTAATTTTACAAA
1 TC-GAGGGTATTTGA-TAATTTTACAAA
* * *
82303511 TCGAGGATATTTGGGTAATTTTATAAA
1 TCGAGGGTATTT-GATAATTTTACAAA
* *
82303538 CCGAGGGTACTTTGGTAATTTTACAA
1 TCGAGGGTA-TTTGATAATTTTACAA
82303564 CTTGGTGTAT
Statistics
Matches: 92, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
26 5 0.05
27 83 0.90
28 4 0.04
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (26 bp):
TCGAGGGTATTTGATAATTTTACAAA
Found at i:82303491 original size:54 final size:54
Alignment explanation
Indices: 82303431--82303563 Score: 178
Period size: 54 Copynumber: 2.5 Consensus size: 54
82303421 TTTTTTAATT
* * *
82303431 CGAGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAAC
1 CGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTGAGTAATTTTACAAAC
* * * *
82303485 TGAGGGTA-TTTCAGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAAC
1 CGAGGGTACTTTGA-TAATTTTACAAATCGAGGATATTTGAGTAATTTTACAAAC
*
82303539 CGAGGGTACTTTGGTAATTTTACAA
1 CGAGGGTACTTTGATAATTTTACAA
82303564 CTTGGTGTAT
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 4 0.06
54 60 0.90
55 3 0.04
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
CGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTGAGTAATTTTACAAAC
Found at i:82308442 original size:27 final size:27
Alignment explanation
Indices: 82308332--82308450 Score: 141
Period size: 27 Copynumber: 4.4 Consensus size: 27
82308322 TGGATAAGTT
* *
82308332 GTAGAATTATCGAAATATCCC-TGTAAG
1 GTAGAATTACCGAAATA-CCCTTGTAGG
*
82308359 GTAGAATTACTGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* * *
82308386 GTAGAAATACCGAAATACCCCTGTATG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
82308413 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
82308440 GTAAAATTACC
1 GTAGAATTACC
82308451 ATTTTGCCCC
Statistics
Matches: 78, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 3 0.04
27 75 0.96
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:82308461 original size:54 final size:54
Alignment explanation
Indices: 82308332--82308446 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
82308322 TGGATAAGTT
* * * *
82308332 GTAGAATTATCGAAATATCCCTGTAAGGTAGAATTACTGAAATACCCTTGTAGG
1 GTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGG
* * *
82308386 GTAGAAATACCGAAATACCCCTGTATGGTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGG
82308440 GTA-AAAT
1 GTAGAAAT
82308447 TACCATTTTG
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 4 0.07
54 50 0.93
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.27
Consensus pattern (54 bp):
GTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGG
Found at i:82309145 original size:27 final size:26
Alignment explanation
Indices: 82309101--82309152 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
82309091 CTCGTTGCAA
*
82309101 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
82309128 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
82309153 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:82309223 original size:71 final size:67
Alignment explanation
Indices: 82309082--82309223 Score: 176
Period size: 67 Copynumber: 2.1 Consensus size: 67
82309072 GAGGAAGCGT
* * * *
82309082 TCTGGCAGACTCGTTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGACTCGCTGCAATCTGGTGGCCTCACCACATATATCTGTTCTGGTGACATCGCCACAA
82309147 TA
66 TA
* * * *
82309149 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCACCACATATATATATCTGTTCTTGTGGCATCGCC
1 TCTGGCAGACTCGCTGCAATCTGGTGGCCTCACCAC----ATATATCTGTTCTGGTGACATCGCC
82309214 ACAATA
62 ACAATA
82309220 TCTG
1 TCTG
82309224 TATTTAGTGA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
67 32 0.51
71 31 0.49
ACGTcount: A:0.20, C:0.27, G:0.21, T:0.32
Consensus pattern (67 bp):
TCTGGCAGACTCGCTGCAATCTGGTGGCCTCACCACATATATCTGTTCTGGTGACATCGCCACAA
TA
Found at i:82315183 original size:27 final size:27
Alignment explanation
Indices: 82315149--82315267 Score: 116
Period size: 27 Copynumber: 4.4 Consensus size: 27
82315139 TGGATAAGTT
82315149 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
**
82315176 GTAGAATTACTAAAATA-CCCT-TATAG
1 GTAGAATTACCGAAATACCCCTGTA-AG
* * *
82315202 AGTAGAAATGCCGAAATACCCCTGTATG
1 -GTAGAATTACCGAAATACCCCTGTAAG
* * **
82315230 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
82315257 GTAAAATTACC
1 GTAGAATTACC
82315268 ATTTTGCCCC
Statistics
Matches: 74, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
25 2 0.03
26 6 0.08
27 59 0.80
28 5 0.07
29 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:82315248 original size:54 final size:54
Alignment explanation
Indices: 82315149--82315251 Score: 152
Period size: 54 Copynumber: 1.9 Consensus size: 54
82315139 TGGATAAGTT
* *
82315149 GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTACTAAAATACCCTTATAGA
1 GTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCTTATAGA
* * * *
82315203 GTAGAAATGCCGAAATACCCCTGTATGGTAGAATTACCGAGATACCCTT
1 GTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCTT
82315252 GTGGGGTAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.25
Consensus pattern (54 bp):
GTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCTTATAGA
Found at i:82315961 original size:27 final size:26
Alignment explanation
Indices: 82315917--82315968 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
82315907 CTCGCTGCAA
*
82315917 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
82315944 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
82315969 GTAGCCTCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:82316067 original size:27 final size:26
Alignment explanation
Indices: 82316011--82316070 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
82316001 ATATATATAT
* *
82316011 ATATCTGTTCTTGTGGCCTCGCCACA
1 ATATCTGTTCTGGTGACCTCGCCACA
* *
82316037 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTCGCCACA
82316064 ATATCTG
1 ATATCTG
82316071 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTCGCCACA
Found at i:82320256 original size:82 final size:81
Alignment explanation
Indices: 82320084--82320613 Score: 832
Period size: 82 Copynumber: 6.5 Consensus size: 81
82320074 GCATGAGCAT
*
82320084 TTGAATACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCG
1 TTGAATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCG
82320149 AAGGCATTTGTGCGAG
66 AAGGCATTTGTGCGAG
*
82320165 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATATATCCGGGCTAAGAC
1 TTGA-ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG--ATATATCCGGGCTAAGAC
*
82320230 CCGAAGGCATTTGTGCAAG
63 CCGAAGGCATTTGTGCGAG
* *
82320249 TTG-ATATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGACATATATCCGGGCTAAGACC
1 TTGAATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG--ATATATCCGGGCTAAGACC
* *
82320313 CGAAGGCAATTGTGCAAG
64 CGAAGGCATTTGTGCGAG
*
82320331 TTG-ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATATATCCGGGCTAAGACC
1 TTGAATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG--ATATATCCGGGCTAAGACC
82320395 CGAAGGCATTTGTGCGAG
64 CGAAGGCATTTGTGCGAG
82320413 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
1 TTGA-ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
82320478 GAAGGCATTTGTGCGAG
65 GAAGGCATTTGTGCGAG
*
82320495 TTGACATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCC
1 TTGA-ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
*
82320560 GAAGGCATTCGTGCGAG
65 GAAGGCATTTGTGCGAG
* * * *
82320577 TTG-CTATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGAATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
82320614 TTGTGGTTAT
Statistics
Matches: 430, Mismatches: 14, Indels: 11
0.95 0.03 0.02
Matches are distributed among these distances:
80 31 0.07
81 4 0.01
82 317 0.74
84 78 0.18
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (81 bp):
TTGAATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCG
AAGGCATTTGTGCGAG
Found at i:82320312 original size:124 final size:123
Alignment explanation
Indices: 82320092--82320613 Score: 863
Period size: 124 Copynumber: 4.2 Consensus size: 123
82320082 ATTTGAATAC
82320092 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-ATATATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGAATATATCCGGGCTAAGACCCGAAGGCAT
*
82320156 TTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATAT
66 TTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG--ATAT
*
82320216 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-ATATATCCGGGCTAAGACCTGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGAATATATCCGGGCTAAGACCCGAAGGCAT
*
82320280 TTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
66 TTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
82320338 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGA-ATATATCCGGGCTAAGACCCGAAGGCA
82320403 TTTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
65 TTTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
82320462 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGA-ATATATCCGGGCTAAGACCCGAAGGCA
* * * * *
82320527 ATTGTGCAAGTTG--ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
65 TTTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
82320584 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
82320614 TTGTGGTTAT
Statistics
Matches: 382, Mismatches: 14, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
122 107 0.28
124 275 0.72
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (123 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGAATATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:82320446 original size:206 final size:206
Alignment explanation
Indices: 82320084--82320613 Score: 976
Period size: 206 Copynumber: 2.6 Consensus size: 206
82320074 GCATGAGCAT
* *
82320084 TTGA-ATACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCC
82320148 GAAGGCATTTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACA
66 GAAGGCATTTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACA
*
82320213 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCTGAAGGC
131 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGC
82320278 ATTTGTGCGAG
196 ATTTGTGCGAG
82320289 TTGACATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCC
82320354 GAAGGCATTTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACA
66 GAAGGCATTTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACA
82320419 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGC
131 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGC
82320484 ATTTGTGCGAG
196 ATTTGTGCGAG
82320495 TTGACATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCC
* * * *
82320560 GAAGGCATTCGTGCGAGTTG-C-TATACCCGGGTTAAGACCCGAAGGCAATTGTGC
66 GAAGGCATTTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
82320614 TTGTGGTTAT
Statistics
Matches: 317, Mismatches: 7, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
204 30 0.09
205 5 0.02
206 282 0.89
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (206 bp):
TTGACATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCC
GAAGGCATTTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACA
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGC
ATTTGTGCGAG
Found at i:82329275 original size:43 final size:43
Alignment explanation
Indices: 82329227--82329377 Score: 155
Period size: 43 Copynumber: 3.5 Consensus size: 43
82329217 CCTAGACGTT
* * * *
82329227 GTCTTACATGTAATCACATATCGGTGCCACTATCCCAGACAGG
1 GTCTTACATGAAATCACATATCGATGCCAATGTCCCAGACAGG
* * * * *
82329270 GTCTTACACGAACTCATATA-CAATGCCAATGTCCCAGACATG
1 GTCTTACATGAAATCACATATCGATGCCAATGTCCCAGACAGG
* *
82329312 GTCTTGCACAT-AAATCACAAATCGATGCCAATGTCCCAAAC-GTG
1 GTCTT--ACATGAAATCACATATCGATGCCAATGTCCCAGACAG-G
82329356 GTCTTACATGAAATCACATATC
1 GTCTTACATGAAATCACATATC
82329378 AAAATCTTAT
Statistics
Matches: 86, Mismatches: 17, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
42 26 0.30
43 34 0.40
44 26 0.30
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (43 bp):
GTCTTACATGAAATCACATATCGATGCCAATGTCCCAGACAGG
Found at i:82329349 original size:86 final size:85
Alignment explanation
Indices: 82329203--82329363 Score: 191
Period size: 86 Copynumber: 1.9 Consensus size: 85
82329193 GAAAAGCTCG
* * * * * * * *
82329203 TACAATGCCAACGTCCTAGACGTTGTCTTACATGTAATCACATATCGGTGCCACTATCCCAGACA
1 TACAATGCCAACGTCCCAGACATGGTCTTACATGAAATCACAAATCGATGCCAATATCCCAAAC-
82329268 G-GGTCTTACACGAACTCATA
65 GTGGTCTTACACGAACTCATA
* *
82329288 TACAATGCCAATGTCCCAGACATGGTCTTGCACAT-AAATCACAAATCGATGCCAATGTCCCAAA
1 TACAATGCCAACGTCCCAGACATGGTCTT--ACATGAAATCACAAATCGATGCCAATATCCCAAA
82329352 CGTGGTCTTACA
64 CGTGGTCTTACA
82329364 TGAAATCACA
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
85 26 0.41
86 33 0.52
87 4 0.06
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (85 bp):
TACAATGCCAACGTCCCAGACATGGTCTTACATGAAATCACAAATCGATGCCAATATCCCAAACG
TGGTCTTACACGAACTCATA
Found at i:82333130 original size:14 final size:14
Alignment explanation
Indices: 82333111--82333141 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
82333101 CAAAGCAAAG
82333111 GAGTTCTATATTTT
1 GAGTTCTATATTTT
82333125 GAGTTCTATATTTT
1 GAGTTCTATATTTT
82333139 GAG
1 GAG
82333142 ATATTTATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.23, C:0.06, G:0.19, T:0.52
Consensus pattern (14 bp):
GAGTTCTATATTTT
Found at i:82340498 original size:46 final size:45
Alignment explanation
Indices: 82340361--82340576 Score: 181
Period size: 46 Copynumber: 4.6 Consensus size: 45
82340351 GTGCCAATGC
**
82340361 CATGTCCCAGACATGGTCTTACACTAGCTCATA-TCTCAA-GTTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCT--TAGTCTCAAGGCCGATG
* *
82340407 CCATGTCCTAGACATGGTCTTACACT-GACTATCA-TCTCGTA-GCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAG-CT-T-AGTCTC-AAGGCCGATG
* *
82340455 CATGTCCCAGGCATGTCTTACACTAGCTTAAGTCTGAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-AGTCTCAAGGCCGATG
* * *
82340501 CATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAG-CTTAGTCTCAAGGCCGATG
* *
82340547 CCATCTCTCAGACATGGTCTTACACTAGCT
1 -CATGTCCCAGACAT-GTCTTACACTAGCT
82340577 CTCATAATGT
Statistics
Matches: 143, Mismatches: 17, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
45 3 0.02
46 63 0.44
47 59 0.41
48 18 0.13
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAGTCTCAAGGCCGATG
Found at i:82340575 original size:94 final size:92
Alignment explanation
Indices: 82340352--82340621 Score: 271
Period size: 94 Copynumber: 2.9 Consensus size: 92
82340342 ATGGGTAAGG
* * * *
82340352 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAA-GTTGATGCCATGTCCT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTA-ATCTGAAGGCTGATG-CATGTCCT
* *
82340416 AGACATGGTCTTACACT-GACTATCATCTCG
64 AGACAT-GTCTTACACTAG-CCATCATCTCA
* * *
82340446 TAGCCGATG-CATGTCCCAGGCAT-GTCTTACACTAGCTTAAGTCTGAAGGCCGATGCATGTCCC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTAA-TCTGAAGGCTGATGCATGTCCT
* *
82340509 AGACATGTCTTACACTAGCCCTCGTCTCAA
64 AGACATGTCTTACACTAGCCATCATCTC-A
* * * * * *
82340539 TGCCGATGCCATCTCTCAGACATGGTCTTACACTAGCTCTCATAATG-TGGCTGATACATGTCCT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TAAT-CTGAAGGCTGATGCATGTCCT
82340603 AGACATGTCTTACACTAGC
64 AGACATGTCTTACACTAGC
82340622 TCACACAAGT
Statistics
Matches: 147, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
92 25 0.17
93 46 0.31
94 66 0.45
95 10 0.07
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (92 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTAATCTGAAGGCTGATGCATGTCCTAG
ACATGTCTTACACTAGCCATCATCTCA
Found at i:82340613 original size:140 final size:140
Alignment explanation
Indices: 82340361--82340622 Score: 336
Period size: 140 Copynumber: 1.9 Consensus size: 140
82340351 GTGCCAATGC
** *
82340361 CATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTTGATGCCATGTCCTAGACATGGTC
1 CATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATGCCATCTCCTAGACATGGTC
* * *
82340426 TTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGGCATGTCTTACACTAGCTTAAGTCTG
66 TTACACTGACTATCATATCGTAGCCGATACATGTCCCAGACATGTCTTACACTAGCTTAAGTCTG
82340491 AAGGCCGATG
131 AAGGCCGATG
* *
82340501 CATGTCCCAGACAT-GTCTTACACTAGC-CCTCGTCTCAATGCCGATGCCATCT-CTCAGACATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAA-GCCGATGCCATCTCCT-AGACATG
* * * *
82340563 GTCTTACACT-AGCTCTCATAAT-GTGGCTGATACATGTCCTAGACATGTCTTACACTAGCT
63 GTCTTACACTGA-CTATCAT-ATCGTAGCCGATACATGTCCCAGACATGTCTTACACTAGCT
82340623 CACACAAGTG
Statistics
Matches: 105, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
138 2 0.02
139 22 0.21
140 80 0.76
141 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (140 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATGCCATCTCCTAGACATGGTC
TTACACTGACTATCATATCGTAGCCGATACATGTCCCAGACATGTCTTACACTAGCTTAAGTCTG
AAGGCCGATG
Found at i:82341023 original size:30 final size:30
Alignment explanation
Indices: 82340967--82341023 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
82340957 CATATTAGGT
* **
82340967 AAAATGACCATTTTGCCTTTAGACTTTGAC
1 AAAATAACCATTTTGCCCCTAGACTTTGAC
*
82340997 AAAATAACCATTTTGCCCCTATACTTT
1 AAAATAACCATTTTGCCCCTAGACTTT
82341024 AAAATCGATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.37
Consensus pattern (30 bp):
AAAATAACCATTTTGCCCCTAGACTTTGAC
Found at i:82359302 original size:40 final size:40
Alignment explanation
Indices: 82359265--82359489 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
82359255 GCTACTCGTT
* *
82359265 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
82359305 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
82359345 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
82359385 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * * *
82359424 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
82359465 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
82359490 CATCATTCAA
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 115 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:82359473 original size:119 final size:120
Alignment explanation
Indices: 82359267--82359482 Score: 287
Period size: 119 Copynumber: 1.8 Consensus size: 120
82359257 TACTCGTTCA
*
82359267 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
82359332 TTAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCACC
* * ** *
82359387 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCTGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
82359449 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTA
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGACTTA
82359483 GCCCGGACAT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.05
119 59 0.71
120 20 0.24
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCACC
Found at i:82367716 original size:119 final size:120
Alignment explanation
Indices: 82367540--82367755 Score: 289
Period size: 119 Copynumber: 1.8 Consensus size: 120
82367530 TACTCGTTCA
* *
82367540 AATGCCTTCGGGACATAGCCCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
* *
82367605 ATAGTAAC-TCGTACAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCTGGATTTAGTAACTCGCACC
* *
82367660 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTGA-CTCGCACAAATGCCTTCGGGA-CTTAGCCCG
* *
82367721 GATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
63 GATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
82367756 GCCCGGACAT
Statistics
Matches: 84, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
118 5 0.06
119 60 0.71
120 19 0.23
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCACC
Found at i:82367762 original size:40 final size:40
Alignment explanation
Indices: 82367520--82367762 Score: 271
Period size: 40 Copynumber: 6.1 Consensus size: 40
82367510 GGAATTTAAT
** *
82367520 CGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
82367560 CGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* * *
82367600 CGGTTATAGTAACTCGTACAAATGCCTTCGGGACTTAACC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* * *
82367640 TGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
82367679 CGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCC
* * *
82367719 CGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCC
1 CGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
82367759 CGGA
1 CGGA
82367763 CATCATTCAA
Statistics
Matches: 173, Mismatches: 23, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.01
39 31 0.18
40 128 0.74
41 12 0.07
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:82375803 original size:93 final size:93
Alignment explanation
Indices: 82375644--82375813 Score: 243
Period size: 93 Copynumber: 1.8 Consensus size: 93
82375634 AGGGTATTTG
* * * * *
82375644 GGCATCCGAGCTCGTTAAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAG
1 GGCATCCGAGCTCGTTAAGTTCAGTCTGAGTTCACTTATGGATGCAAAAGCCCAAACTCATTGAG
*
82375709 TTGAGTCTGAGTCCGTGAGATGTAACTA
66 TTGAGTCCGAGTCCGTGAGATGTAACTA
* * *
82375737 GGCATCCGAGCTCGTTGAGTTCAGT-TCGAGTTCACTTATGGATGCAAAAGCCCGAGCTCATTGA
1 GGCATCCGAGCTCGTTAAGTTCAGTCT-GAGTTCACTTATGGATGCAAAAGCCCAAACTCATTGA
82375801 GTTGAGTCCGAGT
65 GTTGAGTCCGAGT
82375814 TCTCTTATGG
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
92 1 0.01
93 66 0.99
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTAAGTTCAGTCTGAGTTCACTTATGGATGCAAAAGCCCAAACTCATTGAG
TTGAGTCCGAGTCCGTGAGATGTAACTA
Found at i:82382671 original size:46 final size:44
Alignment explanation
Indices: 82382498--82382672 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 44
82382488 CATCTCGTAA
* *
82382498 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTAAGTCTCAA-G
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC-T-CGTCTCAATG
*
82382543 ATCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATG
1 -CCGATGCATGTCCCAGACATGTCTTACACTAG--CTCGTCTCAATG
*
82382590 CCGATGCCATGT-CCAGGACCTGGTCTTACACTAGCTC-TCAT-AATGTGG
1 CCGATG-CATGTCCCA-GACAT-GTCTTACACTAGCTCGTC-TCAA--T-G
*
82382638 CCGGTGCATGTCCCAGACATGTCTTACACTAGCTC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTC
82382673 ACACAAATGA
Statistics
Matches: 111, Mismatches: 7, Indels: 22
0.79 0.05 0.16
Matches are distributed among these distances:
45 4 0.04
46 64 0.58
47 21 0.19
48 22 0.20
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (44 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTCGTCTCAATG
Found at i:82384129 original size:128 final size:129
Alignment explanation
Indices: 82383899--82384149 Score: 432
Period size: 128 Copynumber: 2.0 Consensus size: 129
82383889 CACGAGTTTA
** *
82383899 TGGGGCCCACACGGCCCATTTTGGCCCAGTGTAGCCCAAAGCAGCCTAAATCCCATGAAACTGCT
1 TGGGGCCCACACGGCCCATTTTGGCCCAACGTAGCCCAAAGCAGCCTAAAGCCCATGAAACTGCT
* * *
82383964 CGTGGTTATGATCAAATGCCCACGATTTTGCATTCGGACCACCACAAGAGCGAGCGAATGCTCG
66 AGTGGTTATGATCAAATGCCCACGATTTCGCAGTCGGACCACCACAAGAGCGAGCGAATGCTCG
*
82384028 TGGGGCCCACACGGCCCATTTTGGCCTAACGTAGCCCAAAGCAGCCT-AAGCCCATGAAACTGCT
1 TGGGGCCCACACGGCCCATTTTGGCCCAACGTAGCCCAAAGCAGCCTAAAGCCCATGAAACTGCT
82384092 AGTGGTTATGATCAAATGCCCACGATTTCGCAGTCGGACCACCACAAGAGCGAGCGAA
66 AGTGGTTATGATCAAATGCCCACGATTTCGCAGTCGGACCACCACAAGAGCGAGCGAA
82384150 CGCTTGTGTA
Statistics
Matches: 115, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
128 71 0.62
129 44 0.38
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.19
Consensus pattern (129 bp):
TGGGGCCCACACGGCCCATTTTGGCCCAACGTAGCCCAAAGCAGCCTAAAGCCCATGAAACTGCT
AGTGGTTATGATCAAATGCCCACGATTTCGCAGTCGGACCACCACAAGAGCGAGCGAATGCTCG
Found at i:82405577 original size:22 final size:22
Alignment explanation
Indices: 82405528--82405577 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
82405518 GAACATCGTT
* *
82405528 AGGACACCTTTATCGCGTCATC
1 AGGACGCCCTTATCGCGTCATC
82405550 AGGACGCCCTTATCGCGTCATC
1 AGGACGCCCTTATCGCGTCATC
82405572 AGGACG
1 AGGACG
82405578 AGGGTCTCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.22, C:0.32, G:0.24, T:0.22
Consensus pattern (22 bp):
AGGACGCCCTTATCGCGTCATC
Found at i:82406522 original size:35 final size:35
Alignment explanation
Indices: 82406471--82406579 Score: 103
Period size: 35 Copynumber: 3.1 Consensus size: 35
82406461 CCCTTTCGAG
* * *
82406471 GTGTCAGCCCGTAGGACCTGTATAATGTTTACACA
1 GTGTCACCCCGAAGGACCTGTATAATATTTACACA
* * *
82406506 GTGTCACCCCGAAGGACTTGTATATTATTTACACG
1 GTGTCACCCCGAAGGACCTGTATAATATTTACACA
** * * *
82406541 GTGTTGCCTCGAAGGACCTATAT-ATCATTTACACT
1 GTGTCACCCCGAAGGACCTGTATAAT-ATTTACACA
82406576 GTGT
1 GTGT
82406580 AAACAATATC
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
34 1 0.02
35 59 0.98
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (35 bp):
GTGTCACCCCGAAGGACCTGTATAATATTTACACA
Found at i:82406639 original size:35 final size:35
Alignment explanation
Indices: 82406600--82406673 Score: 98
Period size: 35 Copynumber: 2.1 Consensus size: 35
82406590 GCCCTAAATA
82406600 ACCTATATA-CAGTTTACACGGTGTC-GCCTCGAAGG
1 ACCTATATATC-GTTTACACGGTGTCTGCCT-GAAGG
* *
82406635 ACCTATATATCGTTTACATGGTGTCTTCCTGAAGG
1 ACCTATATATCGTTTACACGGTGTCTGCCTGAAGG
82406670 ACCT
1 ACCT
82406674 GTAGATAACC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
35 31 0.89
36 4 0.11
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (35 bp):
ACCTATATATCGTTTACACGGTGTCTGCCTGAAGG
Found at i:82413779 original size:48 final size:48
Alignment explanation
Indices: 82413721--82414060 Score: 635
Period size: 48 Copynumber: 7.1 Consensus size: 48
82413711 ATATACACAC
* * *
82413721 ATCTCCTACATATTTCACACTAGTCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
82413769 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
82413817 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
82413865 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
82413913 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
82413961 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
82414009 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
82414057 ATCT
1 ATCT
82414061 ATTTATCTTG
Statistics
Matches: 285, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 285 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:82416755 original size:30 final size:30
Alignment explanation
Indices: 82416719--82416775 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
82416709 ATGAATCGGA
82416719 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAAACT
82416749 AGCTTTGGCACTAAGTGTGCGATTTAA
1 AGCTTTGGCACTAAGTGTGCGATTTAA
82416776 CTAACTTCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (30 bp):
AGCTTTGGCACTAAGTGTGCGATTTAAACT
Found at i:82420322 original size:54 final size:54
Alignment explanation
Indices: 82420231--82420346 Score: 171
Period size: 54 Copynumber: 2.1 Consensus size: 54
82420221 CGGCATGGCT
* * *
82420231 ACCAGAACAGATATTGTGACAGAGTCACCAGATACAGATA-TTGTGGCAGAGCC
1 ACCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATATTTGTAGCAGAGCC
* *
82420284 ACCAGAACAGATACTTGTGGCAGAGCCACTAGAAACAGATATTTGTAGCAGAGCC
1 ACCAGAACAGATA-TTGTGACAGAGCCACCAGAAACAGATATTTGTAGCAGAGCC
82420339 ACCAGAAC
1 ACCAGAAC
82420347 GCTTCCTCCA
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
53 13 0.23
54 23 0.41
55 20 0.36
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.17
Consensus pattern (54 bp):
ACCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATATTTGTAGCAGAGCC
Found at i:82420329 original size:28 final size:27
Alignment explanation
Indices: 82420231--82420345 Score: 153
Period size: 27 Copynumber: 4.3 Consensus size: 27
82420221 CGGCATGGCT
* *
82420231 ACCAG-AACAGATATTGTGACAGAGTC
1 ACCAGAAACAGATATTGTGGCAGAGCC
*
82420257 ACCAGATACAGATATTGTGGCAGAGCC
1 ACCAGAAACAGATATTGTGGCAGAGCC
82420284 ACCAG-AACAGATACTTGTGGCAGAGCC
1 ACCAGAAACAGATA-TTGTGGCAGAGCC
* *
82420311 ACTAGAAACAGATATTTGTAGCAGAGCC
1 ACCAGAAACAGATA-TTGTGGCAGAGCC
82420339 ACCAGAA
1 ACCAGAA
82420346 CGCTTCCTCC
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 12 0.15
27 40 0.51
28 26 0.33
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.17
Consensus pattern (27 bp):
ACCAGAAACAGATATTGTGGCAGAGCC
Found at i:82428028 original size:27 final size:27
Alignment explanation
Indices: 82427990--82428051 Score: 90
Period size: 28 Copynumber: 2.3 Consensus size: 27
82427980 CAGCATGGCT
*
82427990 ACCAGAACAGATA-TTGTGACAGAGTC
1 ACCAGAACAGATATTTGTGACAGAGCC
*
82428016 ACCAGATACAGATATTTGTGGCAGAGCC
1 ACCAGA-ACAGATATTTGTGACAGAGCC
82428044 ACCAGAAC
1 ACCAGAAC
82428052 GCTTCCTCCA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
26 6 0.19
27 9 0.28
28 17 0.53
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
ACCAGAACAGATATTTGTGACAGAGCC
Found at i:82428196 original size:25 final size:26
Alignment explanation
Indices: 82428151--82428250 Score: 134
Period size: 26 Copynumber: 3.9 Consensus size: 26
82428141 CAAAATTAAC
82428151 CCTAGGGGTATAATGGTAATTTTGCA
1 CCTAGGGGTATAATGGTAATTTTGCA
82428177 CCTAGGGGTA-AATGGTAATTTT-CATA
1 CCTAGGGGTATAATGGTAATTTTGC--A
* *
82428203 CTTAGGGGTATAATGGTAATTTTGTA
1 CCTAGGGGTATAATGGTAATTTTGCA
*
82428229 CCTAGAGGTA-AATGGTAATTTT
1 CCTAGGGGTATAATGGTAATTTT
82428251 CATACTTAGG
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
24 1 0.02
25 24 0.36
26 29 0.44
27 12 0.18
ACGTcount: A:0.29, C:0.09, G:0.25, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTATAATGGTAATTTTGCA
Found at i:82428232 original size:52 final size:52
Alignment explanation
Indices: 82428153--82428265 Score: 208
Period size: 52 Copynumber: 2.2 Consensus size: 52
82428143 AAATTAACCC
*
82428153 TAGGGGTATAATGGTAATTTTGCACCTAGGGGTAAATGGTAATTTTCATACT
1 TAGGGGTATAATGGTAATTTTGCACCTAGAGGTAAATGGTAATTTTCATACT
*
82428205 TAGGGGTATAATGGTAATTTTGTACCTAGAGGTAAATGGTAATTTTCATACT
1 TAGGGGTATAATGGTAATTTTGCACCTAGAGGTAAATGGTAATTTTCATACT
82428257 TAGGGGTAT
1 TAGGGGTAT
82428266 TTTAGTAAAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 59 1.00
ACGTcount: A:0.29, C:0.08, G:0.26, T:0.37
Consensus pattern (52 bp):
TAGGGGTATAATGGTAATTTTGCACCTAGAGGTAAATGGTAATTTTCATACT
Found at i:82434479 original size:30 final size:29
Alignment explanation
Indices: 82434443--82434506 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
82434433 ATGAATCGGA
*
82434443 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCAATTT-AACT
82434473 AGCTTTGGCACTAAGTGTGCAATTTAACT
1 AGCTTTGGCACTAAGTGTGCAATTTAACT
82434502 AGCTT
1 AGCTT
82434507 CGGTTACTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.27
30 24 0.73
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCAATTTAACT
Found at i:82440837 original size:50 final size:50
Alignment explanation
Indices: 82440762--82441146 Score: 332
Period size: 50 Copynumber: 7.7 Consensus size: 50
82440752 GTGATTCACG
* *
82440762 TGTGTTGTACTTAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
** * * **
82440812 TGTGTAGTACTAAGTGCAAACTACTATGTGTACCCG-TT-A-ACTTCGATCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCG--CA
* * * * * * * *
82440861 TGTGTGTAGTACTAAGTGTA-GCTACTGCGTGTATCAGATGGTTAAGTCACG
1 --TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
* *
82440912 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
* * ** * * * * * *
82440962 TGTGTAGTACTAAGTGCAAGCTACTATGCATACCCG-TTAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGTCGCA
* * * * * *
82441013 TGTGTAGTACTAAGTGTAGGCTACTACATGTATCAGA-TGATTAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA-TAGGTCGCA
* *
82441063 TGTGTCGTACTAAGCGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
*
82441113 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC
82441147 TAAGAGCTTT
Statistics
Matches: 260, Mismatches: 63, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
47 4 0.02
48 1 0.00
49 24 0.09
50 171 0.66
51 57 0.22
53 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
Found at i:82441028 original size:150 final size:151
Alignment explanation
Indices: 82440757--82441138 Score: 631
Period size: 150 Copynumber: 2.5 Consensus size: 151
82440747 TCATTGTGAT
* *
82440757 TCACGTGTGTTGTACTTAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
* ** *
82440822 TAAGTGCAAACTACTATGTGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGTA-GCTAC
66 TAAGTGCAAGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCTAC
* * *
82440886 TGCGTGTATCAGATGGTTAAG
131 TACATGTATCAGATGATTAAG
* *
82440907 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
82440972 TAAGTGCAAGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCTAC
66 TAAGTGCAAGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCTAC
82441037 TACATGTATCAGATGATTAAG
131 TACATGTATCAGATGATTAAG
* *
82441058 TCACGTGTGTCGTACTAAGCGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
*
82441123 TAAGTGCAGGCTACTA
66 TAAGTGCAAGCTACTA
82441139 CGCGTACCTA
Statistics
Matches: 215, Mismatches: 16, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
150 116 0.54
151 99 0.46
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (151 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
TAAGTGCAAGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCTAC
TACATGTATCAGATGATTAAG
Found at i:82441034 original size:101 final size:101
Alignment explanation
Indices: 82440907--82441088 Score: 267
Period size: 101 Copynumber: 1.8 Consensus size: 101
82440897 GATGGTTAAG
* * *
82440907 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATTGA-TAGGTCGCATGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAAA-TGATTAAGTCACATGTGTAGTA
*
82440971 CTAAGTGCAAGCTACTATGCATACCCGTTAACTTCGA
65 CTAAGCGCAAGCTACTATGCATACCCGTTAACTTCGA
* * * *
82441008 TCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTATCAGATGATTAAGTCACGTGTGTCGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAAATGATTAAGTCACATGTGTAGTAC
*
82441073 TAAGCGCAGGCTACTA
66 TAAGCGCAAGCTACTA
82441089 CGTGTACCAG
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
100 3 0.04
101 68 0.96
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAAATGATTAAGTCACATGTGTAGTAC
TAAGCGCAAGCTACTATGCATACCCGTTAACTTCGA
Found at i:82441370 original size:16 final size:16
Alignment explanation
Indices: 82441349--82441380 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82441339 AGAATGGAGT
82441349 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
82441365 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
82441381 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:82443593 original size:19 final size:21
Alignment explanation
Indices: 82443549--82443593 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
82443539 CCCTCTTAAA
*
82443549 CCCCCTTTTCACTCCTATGAT
1 CCCCTTTTTCACTCCTATGAT
*
82443570 CCCCTTTTTC-CTCCTTTG-T
1 CCCCTTTTTCACTCCTATGAT
82443589 CCCCT
1 CCCCT
82443594 CAACATGCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 6 0.27
20 7 0.32
21 9 0.41
ACGTcount: A:0.07, C:0.47, G:0.04, T:0.42
Consensus pattern (21 bp):
CCCCTTTTTCACTCCTATGAT
Found at i:82445503 original size:16 final size:18
Alignment explanation
Indices: 82445472--82445509 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
82445462 AATTTACATG
*
82445472 AAATATTGATTTTTAGCA
1 AAATATTGATTTTTAGAA
82445490 AAATA-TGA-TTTTAGAA
1 AAATATTGATTTTTAGAA
82445506 AAAT
1 AAAT
82445510 GGTTCATTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 11 0.58
17 3 0.16
18 5 0.26
ACGTcount: A:0.47, C:0.03, G:0.11, T:0.39
Consensus pattern (18 bp):
AAATATTGATTTTTAGAA
Found at i:82447689 original size:68 final size:65
Alignment explanation
Indices: 82447483--82447699 Score: 217
Period size: 67 Copynumber: 3.3 Consensus size: 65
82447473 CATAATTTTG
* * * *
82447483 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGTGACCTAGCCA-CTTTA-TCTCGTA
1 GCTCTCTTGTACACATGGTGTATACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTCGTA
** * * * * * * * *
82447546 GCTCTCTTGTTTACATGGTGTCCTTCACCTCGAACCACACATGCAACCTAGCTACATCTA-TCTC
1 GCTCTCTTGTACACATGGTGT--AT-ACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTC
82447610 GTA
63 GTA
82447613 GCTCTCTTGT-CTACATGGTGTATACATAGTATCACCCATGCGACCTAGCTACCTCATAATGTCT
1 GCTCTCTTGTAC-ACATGGTGTATACATAGTATCACCCATGCGACCTAGCTACCTC-T-AT-TCT
82447677 CGTA
62 CGTA
82447681 GCTCTCTTGTACACATGGT
1 GCTCTCTTGTACACATGGT
82447700 ATGCATCTCG
Statistics
Matches: 121, Mismatches: 23, Indels: 15
0.76 0.14 0.09
Matches are distributed among these distances:
63 19 0.16
64 25 0.21
65 2 0.02
66 21 0.17
67 29 0.24
68 24 0.20
69 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (65 bp):
GCTCTCTTGTACACATGGTGTATACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTCGTA
Found at i:82457061 original size:24 final size:25
Alignment explanation
Indices: 82457008--82457085 Score: 92
Period size: 24 Copynumber: 3.3 Consensus size: 25
82456998 GGCTATCCGA
* *
82457008 AGCTTCCCG-TTATGGTTCTTTTTG
1 AGCTTCCCGATTATGGCTCTTTATG
* *
82457032 AACTTCCCGATTATGCCTC-TTATG
1 AGCTTCCCGATTATGGCTCTTTATG
82457056 AGCTTCCCGA-TA-GGCTCTTTATG
1 AGCTTCCCGATTATGGCTCTTTATG
82457079 AGCTTCC
1 AGCTTCC
82457086 AGAAGTGGTA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
22 4 0.09
23 14 0.30
24 21 0.46
25 7 0.15
ACGTcount: A:0.15, C:0.27, G:0.18, T:0.40
Consensus pattern (25 bp):
AGCTTCCCGATTATGGCTCTTTATG
Found at i:82459100 original size:40 final size:40
Alignment explanation
Indices: 82459055--82459172 Score: 209
Period size: 40 Copynumber: 3.0 Consensus size: 40
82459045 GGAAAAAAAA
82459055 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
82459095 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * *
82459135 TATAACCGGGTTAAGTCCCAAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
82459173 GTTACATCCG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 75 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:82461214 original size:12 final size:12
Alignment explanation
Indices: 82461197--82461222 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
82461187 TAATTAATAC
82461197 AAAAGAAAGTTG
1 AAAAGAAAGTTG
82461209 AAAAGAAAGTTG
1 AAAAGAAAGTTG
82461221 AA
1 AA
82461223 TCAGTGCCGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.23, T:0.15
Consensus pattern (12 bp):
AAAAGAAAGTTG
Found at i:82462272 original size:27 final size:27
Alignment explanation
Indices: 82462242--82462452 Score: 260
Period size: 27 Copynumber: 7.8 Consensus size: 27
82462232 ATCACCAAAG
* *
82462242 TACCCTCGATTTACAGAATTACCGTTC
1 TACCCTCGATTTACAGAATTACCATTT
** * **
82462269 TACCCTAAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
82462296 TACCCACGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
82462323 TACCCTCGATTTATAGAATTATCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
82462350 TACCATCGATTTATAGAATTATCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
82462377 TACCCTCGATTTATAGAATTATCGTTC
1 TACCCTCGATTTACAGAATTACCATTT
82462404 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
82462431 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
82462453 TAAAATACCC
Statistics
Matches: 161, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 161 1.00
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:82462451 original size:54 final size:54
Alignment explanation
Indices: 82462242--82462443 Score: 298
Period size: 54 Copynumber: 3.7 Consensus size: 54
82462232 ATCACCAAAG
* * **
82462242 TACCCTCGATTTACAGAATTACCGTTCTACCCTAAATTTATAGAATTA-CTGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTATC-GTTT
* *
82462296 TACCCACGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTATCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTT
* * * *
82462350 TACCATCGATTTATAGAATTATCATTTTACCCTCGATTTATAGAATTATCGTTC
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTT
82462404 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTA
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTA
82462444 CAAAATTACT
Statistics
Matches: 132, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
54 131 0.99
55 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTT
Found at i:82462462 original size:54 final size:54
Alignment explanation
Indices: 82462228--82462625 Score: 239
Period size: 54 Copynumber: 7.4 Consensus size: 54
82462218 CCTCAAATTG
* * * * * **
82462228 TAAAATCACCAAAGTACCCTCGATTTACAGAATTACCGTTCTACCCTAAATTTA
1 TAAAATTACTAAAATACCCTCGATTTACAGAATTACCATTATACCCTCGATTTA
* **** * *
82462282 TAGAATTACTGTTTTACCCACGATTTACAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACTAAAATACCCTCGATTTACAGAATTACCATTATACCCTCGATTTA
* *** * * * *
82462336 TAGAATTA-TCATTTTACCATCGATTTATAGAATTATCATTTTACCCTCGATTTA
1 TAAAATTACT-AAAATACCCTCGATTTACAGAATTACCATTATACCCTCGATTTA
* ** *
82462390 TAGAATTATCGT--TCTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTA-C-TAAAATACCCTCGATTTACAGAATTACCATTATACCCTCGATTTA
* * * * ** * *
82462444 CAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACTAAAATACCCTCGATTTACAGAATTACCATTATACCCTCGA-TTTA
* * * * * ** * *
82462498 CAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACTAAAATACCCTCGATTTACAGAATTACCATTATACCCTCGA-TTTA
* * * * ** * *
82462552 TAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGATTTG
1 TAAAATTACTAAAATACCCTCGATTTACAGAATTACCATTATACCCTCGATTTA
* *
82462606 TGAAATTACTGAAATACCCT
1 TAAAATTACTAAAATACCCT
82462626 TGTAGGGTAG
Statistics
Matches: 296, Mismatches: 40, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
52 1 0.00
53 4 0.01
54 289 0.98
55 1 0.00
57 1 0.00
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.34
Consensus pattern (54 bp):
TAAAATTACTAAAATACCCTCGATTTACAGAATTACCATTATACCCTCGATTTA
Found at i:82462462 original size:81 final size:81
Alignment explanation
Indices: 82462242--82462481 Score: 275
Period size: 81 Copynumber: 3.0 Consensus size: 81
82462232 ATCACCAAAG
* * ** * *
82462242 TACCCTCGATTTACAGAATTACCGTTCTACCCTAAATTTATAGAATTACTGTTTTACCCACGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATT
*
82462307 TACAGAATTACCATTT
66 TACAGAATTACCATTC
* * *
82462323 TACCCTCGATTTATAGAATTATCATTTTACCATCGATTTATAGAATTA-TCATTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACT-ATTTTACCCTCGAT
* * *
82462387 TTATAGAATTATCGTTC
65 TTACAGAATTACCATTC
* * *** * *
82462404 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATT
*
82462469 TACAAAATTACCA
66 TACAGAATTACCA
82462482 AAATACCCCT
Statistics
Matches: 130, Mismatches: 27, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
80 1 0.01
81 128 0.98
82 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATT
TACAGAATTACCATTC
Found at i:82462489 original size:81 final size:81
Alignment explanation
Indices: 82462229--82462627 Score: 237
Period size: 81 Copynumber: 4.9 Consensus size: 81
82462219 CTCAAATTGT
* * * * ** * **
82462229 AAAATCACCAAAGTACCCTCGATTTACAGAATTACCGTTCTACCCTAAATTTATAGAATTACTGT
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTATACCCTCGATTTATAAAATTACTAA
** **
82462294 TTTACCCACGATTTAC
66 AATACCCTTGATTTAC
* *** * * * * *
82462310 AGAATTACCATTTTACCCTCGATTTATAGAATTATCATTTTACCATCGATTTATAGAATTA-TCA
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTATACCCTCGATTTATAAAATTACT-A
*** * *
82462374 TTTTACCCTCGATTTAT
65 AAATACCCTTGATTTAC
* * **** * *
82462391 AGAATTATCGTTCTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTAA
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTATACCCTCGATTTATAAAATTACTAA
*
82462456 AATACCCTTGGTTTAC
66 AATACCCTTGATTTAC
* * * ** * * * *
82462472 AAAATTACCAAAATACCC-CTAGTTTGCAAAATTACCAAAATACCCTTGGTTTACAAAATTACCA
1 AAAATTACCAAAATACCCTCGA-TTTACAGAATTACCATTATACCCTCGATTTATAAAATTACTA
* **
82462536 AAATACCCCT-AGTTTGT
65 AAATACCCTTGA-TTTAC
* * * ** * * * *
82462553 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGATTTGTGAAATTACTGA
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTATACCCTCGATTTATAAAATTACTAA
82462618 AATACCCTTG
66 AATACCCTTG
82462628 TAGGGTAGAA
Statistics
Matches: 253, Mismatches: 59, Indels: 11
0.78 0.18 0.03
Matches are distributed among these distances:
80 3 0.01
81 249 0.98
82 1 0.00
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.34
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTATACCCTCGATTTATAAAATTACTAA
AATACCCTTGATTTAC
Found at i:82462611 original size:27 final size:27
Alignment explanation
Indices: 82462404--82462627 Score: 236
Period size: 27 Copynumber: 8.3 Consensus size: 27
82462394 ATTATCGTTC
* * ***
82462404 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTTGATTTACAAAATTACCAAAA
* *
82462431 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
*
82462458 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* *
82462485 TACCCCT-AGTTTGCAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACCAAAA
*
82462512 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* **
82462539 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACCAAAA
*
82462566 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
*** **
82462593 TACCCTTGATTTGTGAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACCAAAA
82462620 TACCCTTG
1 TACCCTTG
82462628 TAGGGTAGAA
Statistics
Matches: 165, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
27 165 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACCAAAA
Found at i:82462626 original size:54 final size:54
Alignment explanation
Indices: 82462445--82462627 Score: 296
Period size: 54 Copynumber: 3.4 Consensus size: 54
82462435 CTCGATTTAC
* *
82462445 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGC
1 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGT
82462499 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGT
*
82462553 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTTGATTTGT
1 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAG-TTTGT
* **
82462607 GAAATTACTGAAATACCCTTG
1 AAAATTACCAAAATACCCTTG
82462628 TAGGGTAGAA
Statistics
Matches: 122, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
53 5 0.04
54 117 0.96
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGT
Found at i:82462643 original size:81 final size:81
Alignment explanation
Indices: 82462413--82462653 Score: 234
Period size: 81 Copynumber: 3.0 Consensus size: 81
82462403 CTACCCTCGA
* *** * * * * ****
82462413 TTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATT
1 TTTACAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAATACCCCTAGTGGGTAAAATT
82462478 ACCAAAATACCCCTAG
66 ACCAAAATACCCCTAG
* * **
82462494 TTTGCAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATT
1 TTTACAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAATACCCCTAGTGGGTAAAATT
* *
82462559 ACCAAAATACCCTTGG
66 ACCAAAATACCCCTAG
*** ** *
82462575 TTTACAAAATTACCAAAATACCCTTGATTTGTGAAATTACTGAAATA-CCCTTGTAGGGTAGAAA
1 TTTACAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAATACCCCTAGT-GGGTA-AAA
82462639 -TACCAAAATACCCCT
64 TTACCAAAATACCCCT
82462654 GTACGGTAGA
Statistics
Matches: 133, Mismatches: 25, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
80 6 0.05
81 124 0.93
82 3 0.02
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (81 bp):
TTTACAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAATACCCCTAGTGGGTAAAATT
ACCAAAATACCCCTAG
Found at i:82462647 original size:27 final size:27
Alignment explanation
Indices: 82462617--82462670 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
82462607 GAAATTACTG
* *
82462617 AAATACCCTTGTAGGGTAGAAATACCA
1 AAATACCCCTGTACGGTAGAAATACCA
*
82462644 AAATACCCCTGTACGGTAGAATTACCA
1 AAATACCCCTGTACGGTAGAAATACCA
82462671 TTTTGCCCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (27 bp):
AAATACCCCTGTACGGTAGAAATACCA
Found at i:82464089 original size:43 final size:43
Alignment explanation
Indices: 82464041--82464227 Score: 284
Period size: 43 Copynumber: 4.3 Consensus size: 43
82464031 GCATTTTTTT
* **
82464041 CACAAACGCTGCTAAAGACCATGACCTTTAGCGGCGCTTTTTT
1 CACAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCC
*
82464084 CACAAACGCCGCTAAACACCATGACCTTTAGCGGCGCTTTTCC
1 CACAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCC
* * *
82464127 CACAAACGCCGCTACAGACCATGACCTTTAGCGGCACTTTCCC
1 CACAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCC
** *
82464170 CGTAAACGCCGCTAAAAACCATGACCTTTAGCGGCGCTTTTCC
1 CACAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCC
82464213 CACAAACGCCGCTAA
1 CACAAACGCCGCTAA
82464228 GGAATATAAC
Statistics
Matches: 128, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 128 1.00
ACGTcount: A:0.27, C:0.35, G:0.17, T:0.21
Consensus pattern (43 bp):
CACAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCC
Found at i:82464268 original size:20 final size:20
Alignment explanation
Indices: 82464239--82464276 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
82464229 GAATATAACC
82464239 TTAAAAAATATATATTTTTA
1 TTAAAAAATATATATTTTTA
* *
82464259 TTAAATAATATTTATTTT
1 TTAAAAAATATATATTTT
82464277 CTATATTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TTAAAAAATATATATTTTTA
Found at i:82466407 original size:40 final size:40
Alignment explanation
Indices: 82466352--82466569 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
82466342 CAGATGATGA
* *
82466352 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
82466392 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
** *
82466432 CTAGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
82466472 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
82466512 CCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
82466552 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
82466570 TACTTGGTTT
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 17 0.11
40 143 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:82471414 original size:2 final size:2
Alignment explanation
Indices: 82471407--82471431 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
82471397 AATTGATATT
82471407 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
82471432 TAACAGGACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:82471742 original size:14 final size:14
Alignment explanation
Indices: 82471723--82471765 Score: 77
Period size: 14 Copynumber: 3.1 Consensus size: 14
82471713 TCAAAGGGAT
82471723 GGAGATTTAGAGAA
1 GGAGATTTAGAGAA
*
82471737 GGAGATTTAGAGAT
1 GGAGATTTAGAGAA
82471751 GGAGATTTAGAGAA
1 GGAGATTTAGAGAA
82471765 G
1 G
82471766 TAAGAAATGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.40, C:0.00, G:0.37, T:0.23
Consensus pattern (14 bp):
GGAGATTTAGAGAA
Found at i:82473042 original size:54 final size:53
Alignment explanation
Indices: 82472932--82473054 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
82472922 GTTTTTTGGA
*
82472932 GTTTAGGGTTTTAGGGGTTATAGTTTAGTATTTAGGTGATTTTAGGATTTAGGG
1 GTTTAGGGTTTTAGGGGTTATAGATTAGTATTTA-GTGATTTTAGGATTTAGGG
* * * *
82472986 GTTTAGTGTTTTAGGGGTTATAGATTAGTGTTTA-TTA-TTT----TTTGGGG
1 GTTTAGGGTTTTAGGGGTTATAGATTAGTATTTAGTGATTTTAGGATTTAGGG
*
82473033 GTTTAGGGTTTTAGGGATTATA
1 GTTTAGGGTTTTAGGGGTTATA
82473055 TGACTTTTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
47 26 0.42
51 3 0.05
52 2 0.03
54 31 0.50
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.49
Consensus pattern (53 bp):
GTTTAGGGTTTTAGGGGTTATAGATTAGTATTTAGTGATTTTAGGATTTAGGG
Found at i:82473308 original size:41 final size:41
Alignment explanation
Indices: 82473059--82473299 Score: 342
Period size: 41 Copynumber: 5.9 Consensus size: 41
82473049 ATTATATGAC
** *
82473059 TTTTAGCGGCGTTTTGGCAAAAGCGCCGCTAGTGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
**
82473100 TTTTAGCGGCGTTTTACCAAAAGCGCTTCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
82473141 TTTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
82473182 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-AT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
82473222 TTTTAGCGGCGTTTTACCAAAAAACGCCGTTATTGCTCT-GT
1 TTTTAGCGGCGTTTTACC-AAAAGCGCCGCTAATGCTCTGGT
* *
82473263 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
82473300 CGTGTTTTAT
Statistics
Matches: 182, Mismatches: 17, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
40 36 0.20
41 146 0.80
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:82473308 original size:122 final size:123
Alignment explanation
Indices: 82473059--82473307 Score: 342
Period size: 122 Copynumber: 2.0 Consensus size: 123
82473049 ATTATATGAC
** * * *
82473059 TTTTAGCGGCGTTTTGGCAAAAGCGCCGCTAGTGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGATTTTTAGCGGCGTTTTACCAAAAAC
* * *
82473124 GCTTCTAATGCTCTGGTTTTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
66 GCGTCTAATGCTCTGGTTTTTAACGGCGTTTTACCAAAAACGCCGCTAATGCTCCGGT
*
82473182 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-ATTTTTAGCGGCGTTTTACCAAAAAA
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGATTTTTAGCGGCGTTTTACC-AAAAA
* * *
82473246 CGCCGT-TATTGCTCT-GTTTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCCGTGT
65 CG-CGTCTAATGCTCTGGTTTTTAACGGCGTTTTACCAAAAACGCCGCTAATGCTCCG-GT
82473305 TTT
1 TTT
82473308 ATAATTTTTG
Statistics
Matches: 111, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
122 56 0.50
123 53 0.48
124 2 0.02
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (123 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGATTTTTAGCGGCGTTTTACCAAAAAC
GCGTCTAATGCTCTGGTTTTTAACGGCGTTTTACCAAAAACGCCGCTAATGCTCCGGT
Found at i:82473997 original size:63 final size:63
Alignment explanation
Indices: 82473919--82474045 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
82473909 TAACCGAGGT
82473919 TAGAAGTTTCTTGGGGCTAGCTGGCTATTATTGGCGGTTTGTAAATGGATTTTCTATAATTGC
1 TAGAAGTTTCTTGGGGCTAGCTGGCTATTATTGGCGGTTTGTAAATGGATTTTCTATAATTGC
82473982 TAGAAGTTTCTTGGGGCTAGCTGGCTATTATTGGCGGTTTGTAAATGGATTTTCTATAATTGC
1 TAGAAGTTTCTTGGGGCTAGCTGGCTATTATTGGCGGTTTGTAAATGGATTTTCTATAATTGC
82474045 T
1 T
82474046 GCTCCTATGA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.20, C:0.11, G:0.27, T:0.42
Consensus pattern (63 bp):
TAGAAGTTTCTTGGGGCTAGCTGGCTATTATTGGCGGTTTGTAAATGGATTTTCTATAATTGC
Found at i:82476927 original size:30 final size:30
Alignment explanation
Indices: 82476891--82476950 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
82476881 TTCCCGAGCC
*
82476891 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
82476921 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
82476951 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:82482665 original size:30 final size:30
Alignment explanation
Indices: 82482629--82482688 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
82482619 TTCCTGAGCC
82482629 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
82482659 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
82482689 CGTATTAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:82483400 original size:49 final size:49
Alignment explanation
Indices: 82483341--82483579 Score: 280
Period size: 49 Copynumber: 4.8 Consensus size: 49
82483331 TGAGGTCACG
* *
82483341 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCA
* ** * * * * *
82483390 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT-GGTCGCA
* * * * * *
82483441 TGTGTAGTACTAAGTGTAGGCTACTACATGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT-GGTCGCA
*
82483491 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCA
* *
82483540 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
82483580 CTTCGGCTAC
Statistics
Matches: 157, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
49 76 0.48
50 47 0.30
51 34 0.22
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCA
Found at i:82484050 original size:11 final size:11
Alignment explanation
Indices: 82484029--82484061 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
82484019 TCTGACTTGG
82484029 AAAAATT-TTT
1 AAAAATTATTT
82484039 AAAAATTATTT
1 AAAAATTATTT
*
82484050 AAAAATAATTT
1 AAAAATTATTT
82484061 A
1 A
82484062 GGGGTATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
AAAAATTATTT
Found at i:82487491 original size:46 final size:46
Alignment explanation
Indices: 82487437--82487585 Score: 164
Period size: 46 Copynumber: 3.2 Consensus size: 46
82487427 GACGAGGGCT
*
82487437 AGTGTAAGACATGTCTGGGACATGCATCGAGCT-C-A-AGGAATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGA-CTACGAGATG-AT-AGCC
* *
82487483 AGTGTAAGACATGTTTGGGACATGCATCGACTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGATAGCC
* *
82487529 AATGTAAGACCATGTCTGGGACATGGCATCGACT-TGAGATG-TGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACTACGAGATGAT-AGCC
82487576 AGTGTAAGAC
1 AGTGTAAGAC
82487586 CGTGTCCAGA
Statistics
Matches: 89, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
45 2 0.02
46 43 0.48
47 33 0.37
48 11 0.12
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGATAGCC
Found at i:82487586 original size:47 final size:48
Alignment explanation
Indices: 82487388--82487606 Score: 158
Period size: 47 Copynumber: 4.8 Consensus size: 48
82487378 CACATTATGA
* * * *
82487388 GAGCCAGTGTAAGACCA----TGGGACATGGCTTC-AGCGTTGAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAGC-TCGAGATGT
* * * *
82487432 GGGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGAGCTCAAGGA-AT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAGCTCGA-GATGT
* *
82487478 AAGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGA-CTACGAGATGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAGCT-CGAGATG-T
* * *
82487525 -AGTCAATGTAAGACCATGTCTGGGACATGGCATCGA-CTTGAGATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAGCTCGAGATGT
* ** *
82487571 GAGCCAGTGTAAGACCGTGTCCAGAACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
82487607 GCACCTTACC
Statistics
Matches: 140, Mismatches: 23, Indels: 21
0.76 0.12 0.11
Matches are distributed among these distances:
43 2 0.01
44 12 0.09
45 4 0.03
46 51 0.36
47 62 0.44
48 9 0.06
ACGTcount: A:0.29, C:0.19, G:0.31, T:0.21
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAGCTCGAGATGT
Found at i:82512090 original size:11 final size:11
Alignment explanation
Indices: 82512074--82512112 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
82512064 GGAGAATCAA
82512074 ATTATAATTTT
1 ATTATAATTTT
*
82512085 ATTATAAATTT
1 ATTATAATTTT
82512096 ATTTATAATTTT
1 A-TTATAATTTT
82512108 ATTAT
1 ATTAT
82512113 TGGGAGTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 15 0.60
12 10 0.40
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
ATTATAATTTT
Found at i:82512101 original size:12 final size:12
Alignment explanation
Indices: 82512075--82512110 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
82512065 GAGAATCAAA
82512075 TTATAATTTTA-
1 TTATAATTTTAT
*
82512086 TTATAAATTTAT
1 TTATAATTTTAT
82512098 TTATAATTTTAT
1 TTATAATTTTAT
82512110 T
1 T
82512111 ATTGGGAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 10 0.45
12 12 0.55
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TTATAATTTTAT
Found at i:82512347 original size:94 final size:92
Alignment explanation
Indices: 82512176--82512352 Score: 230
Period size: 94 Copynumber: 1.9 Consensus size: 92
82512166 TTTTCCCTCT
* * * * *
82512176 TGAGTATGATATTGGTTACCGTGCTTGATATGCTCAATGGCTTTCACGATTCCTTAGACTTCCTT
1 TGAGTATGATATTAGTTACCATGCTTGATATGCACAATGGCTTCCACGATTCCTTAGACTTCCAT
* *
82512241 CGACGGTTTAGAAAAAGACATTGCATC
66 CGACAGTCTAGAAAAAGACATTGCATC
* *
82512268 TGAGTATGATATTAGTTACCATATGCTTGATATGCACAGTGGCTTCCAC-ATCTCCTTAGAGTTC
1 TGAGTATGATATTAGTTACC--ATGCTTGATATGCACAATGGCTTCCACGAT-TCCTTAGACTTC
*
82512332 CATGGACAGTCTAGAAAAAGA
63 CATCGACAGTCTAGAAAAAGA
82512353 AACTGCCGTG
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
92 19 0.26
93 2 0.03
94 51 0.71
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (92 bp):
TGAGTATGATATTAGTTACCATGCTTGATATGCACAATGGCTTCCACGATTCCTTAGACTTCCAT
CGACAGTCTAGAAAAAGACATTGCATC
Found at i:82513070 original size:14 final size:14
Alignment explanation
Indices: 82513053--82513088 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
82513043 TAAAAAATAT
82513053 TTTTTATGATTTTA
1 TTTTTATGATTTTA
82513067 TTTTTATGATTTTA
1 TTTTTATGATTTTA
82513081 TATTTTAT
1 T-TTTTAT
82513089 ATAAAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (14 bp):
TTTTTATGATTTTA
Done.