Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 243 of 373
Found at i:82528260 original size:45 final size:45
Alignment explanation
Indices: 82528196--82528285 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
82528186 CCACCAAATG
82528196 GGGATGTTGAGTTTTCGATTGAAGTCACACCTGATATCGCTCTTA
1 GGGATGTTGAGTTTTCGATTGAAGTCACACCTGATATCGCTCTTA
82528241 GGGATGTTGAGTTTTCGATTGAAGTCACACCTGATATCGCTCTTA
1 GGGATGTTGAGTTTTCGATTGAAGTCACACCTGATATCGCTCTTA
82528286 CTTCATGTGC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.36
Consensus pattern (45 bp):
GGGATGTTGAGTTTTCGATTGAAGTCACACCTGATATCGCTCTTA
Found at i:82533464 original size:33 final size:34
Alignment explanation
Indices: 82533417--82533487 Score: 101
Period size: 33 Copynumber: 2.1 Consensus size: 34
82533407 AACAGTCCAG
*
82533417 TATCAGTTAGGGCCTTAGCTC-ATTCAGTAACAA
1 TATCAGTTAGGGCCTTAGCCCAATTCAGTAACAA
*
82533450 TATCAGTGTA-GGCCTTAGCCCAATTCAGTAACAG
1 TATCAGT-TAGGGCCTTAGCCCAATTCAGTAACAA
82533484 TATC
1 TATC
82533488 TGTGCAGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
33 17 0.50
34 17 0.50
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (34 bp):
TATCAGTTAGGGCCTTAGCCCAATTCAGTAACAA
Found at i:82537694 original size:94 final size:94
Alignment explanation
Indices: 82537560--82537732 Score: 229
Period size: 94 Copynumber: 1.8 Consensus size: 94
82537550 GCCACAACAT
* * * * * ** *
82537560 GAGAGCCAGTGTAAGACATGTTTGGGACATGCTTCGGCCTCGAGATATTTAAGCCAGTGTAAGAC
1 GAGAGCCAGTGTAAGACATGTCTAGGAAATGCATCAGCCTCGAGATATACAAGCCAGTGTAAAAC
82537625 ATGTCTAGAACATGCATCGACATTGAGAC
66 ATGTCTAGAACATGCATCGACATTGAGAC
* * *
82537654 GAGAGCTAGTGTAAGACATGTCTAGGAAATGCATCAGCCTCGCGATATACAAGCTAGTGTAAAAC
1 GAGAGCCAGTGTAAGACATGTCTAGGAAATGCATCAGCCTCGAGATATACAAGCCAGTGTAAAAC
* *
82537719 CTGTCTAGGACATG
66 ATGTCTAGAACATG
82537733 GCGTCAGCTT
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
94 66 1.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (94 bp):
GAGAGCCAGTGTAAGACATGTCTAGGAAATGCATCAGCCTCGAGATATACAAGCCAGTGTAAAAC
ATGTCTAGAACATGCATCGACATTGAGAC
Found at i:82537812 original size:49 final size:49
Alignment explanation
Indices: 82537752--82537877 Score: 164
Period size: 49 Copynumber: 2.6 Consensus size: 49
82537742 TGTTGTGTGT
* * *
82537752 TAGTGTAAGACCTGTCTGGGACATGGCATTGA-CATCGATAGATGAGAGC
1 TAGTGTAAGACCTGTCTGGGACATGGCA-TCATCACCGATACATGAGAGC
* * *
82537801 TAGTGTAAGACCTGTTTGGGACATGGCATCATCCCCGCTACATGAGAGC
1 TAGTGTAAGACCTGTCTGGGACATGGCATCATCACCGATACATGAGAGC
*
82537850 CAGTGTAAGACCGTGTCTGGGACATGGC
1 TAGTGTAAGACC-TGTCTGGGACATGGC
82537878 GTCGGCATCT
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
48 2 0.03
49 51 0.76
50 14 0.21
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (49 bp):
TAGTGTAAGACCTGTCTGGGACATGGCATCATCACCGATACATGAGAGC
Found at i:82539085 original size:21 final size:20
Alignment explanation
Indices: 82539049--82539090 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
82539039 CATGTAAAAG
*
82539049 TTCCACACGTGCGTGTTGCCC
1 TTCCACACGAGCGTG-TGCCC
*
82539070 TTCCACACGAGTGTGTGCCC
1 TTCCACACGAGCGTGTGCCC
82539090 T
1 T
82539091 GTTTCAAGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.12, C:0.36, G:0.24, T:0.29
Consensus pattern (20 bp):
TTCCACACGAGCGTGTGCCC
Found at i:82549879 original size:40 final size:40
Alignment explanation
Indices: 82549824--82549957 Score: 209
Period size: 40 Copynumber: 3.4 Consensus size: 40
82549814 TGAAAACCGA
82549824 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
82549864 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* * *
82549904 GCTAAGTCCCGAAGGCAATTGAGCGAG-TAGCTATATCC-A
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
*
82549943 GCTAAATCCCGAAGG
1 GCTAAGTCCCGAAGG
82549958 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 16 0.18
40 73 0.82
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
Found at i:82556914 original size:40 final size:40
Alignment explanation
Indices: 82556807--82557022 Score: 305
Period size: 40 Copynumber: 5.5 Consensus size: 40
82556797 CGGATGATAA
* **
82556807 CCGGGCTAAGTCCTGAAGGCATTTGTTTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
82556847 CCGGGCT--GTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
82556885 CCGGGCTAAGTTCCGAAGGCATTTTTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
82556925 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
82556965 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
82557005 -CTGGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
82557023 TGCTTGGTTT
Statistics
Matches: 160, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
38 35 0.22
39 18 0.11
40 107 0.67
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:82561195 original size:13 final size:13
Alignment explanation
Indices: 82561177--82561203 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82561167 TTTCACTTTA
82561177 TGGCGTGCTCGTT
1 TGGCGTGCTCGTT
82561190 TGGCGTGCTCGTT
1 TGGCGTGCTCGTT
82561203 T
1 T
82561204 TATGGCTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.22, G:0.37, T:0.41
Consensus pattern (13 bp):
TGGCGTGCTCGTT
Found at i:82565248 original size:27 final size:27
Alignment explanation
Indices: 82565187--82565287 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 27
82565177 GTACCCCCGG
** * *
82565187 TTTATAAAATTACCCAAAT-TCCTCTA
1 TTTATAAAATTACTGAAATACCCTCAA
* * *
82565213 TTTGTAAAATTACCGAAATACCCTCAG
1 TTTATAAAATTACTGAAATACCCTCAA
*
82565240 TTT-TCAAAATTATTGAAATACCCTCAA
1 TTTAT-AAAATTACTGAAATACCCTCAA
82565267 TTTATAAAATTACTGAAATAC
1 TTTATAAAATTACTGAAATAC
82565288 TCTCGACTTG
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 18 0.29
27 44 0.70
28 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.05, T:0.36
Consensus pattern (27 bp):
TTTATAAAATTACTGAAATACCCTCAA
Found at i:82565367 original size:27 final size:26
Alignment explanation
Indices: 82565218--82565368 Score: 92
Period size: 27 Copynumber: 5.7 Consensus size: 26
82565208 CTCTATTTGT
* *
82565218 AAAATTACCGAAATACCCTC-AGTTTTC
1 AAAATTA-TGAAATACCCTCGA-TTTAC
* *
82565245 AAAATTATTGAAATACCCTCAATTTAT
1 AAAATTA-TGAAATACCCTCGATTTAC
* * *
82565272 AAAATTACTGAAATACTCTCGACTT-G
1 AAAATTA-TGAAATACCCTCGATTTAC
* *
82565298 TAAATTATCAAAGTACCC-CGATTTAC
1 AAAATTATGAAA-TACCCTCGATTTAC
* ** **
82565324 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTATGA-AATACCCTCGATTTAC
82565351 AAAATTATTGAAATACCC
1 AAAATTA-TGAAATACCC
82565369 CTGTAGGGTA
Statistics
Matches: 94, Mismatches: 24, Indels: 12
0.72 0.18 0.09
Matches are distributed among these distances:
25 9 0.10
26 22 0.23
27 61 0.65
28 2 0.02
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.32
Consensus pattern (26 bp):
AAAATTATGAAATACCCTCGATTTAC
Found at i:82565383 original size:27 final size:27
Alignment explanation
Indices: 82565360--82565683 Score: 443
Period size: 27 Copynumber: 12.0 Consensus size: 27
82565350 CAAAATTATT
82565360 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
82565387 GAAATACCCTTGTAAGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
82565414 GAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
82565441 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
82565468 GAAATACCCCTGTAAGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
82565495 GAAATACCCTTATAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
82565522 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
82565549 GAAATACCCTTGTACGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
**
82565576 GAAATACCCCTGTAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
82565603 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
82565630 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
82565657 GAGATA-CCCTCGTGGGGTAAAATTACC
1 GAAATACCCCT-GTAGGGTAGAATTACC
82565684 ATTTTGCCCG
Statistics
Matches: 263, Mismatches: 33, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 4 0.02
27 259 0.98
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:82566351 original size:27 final size:26
Alignment explanation
Indices: 82566307--82566358 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
82566297 CTCGCTGCAA
*
82566307 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
82566334 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
82566359 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:82567760 original size:36 final size:36
Alignment explanation
Indices: 82567690--82567764 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 36
82567680 TTACACTAAC
* **
82567690 ACACATCAAGTCAATGCCATGTCCTAGGTAGGTCTT
1 ACACATCAAGTCAATGCCATGTCCAAACTAGGTCTT
*
82567726 ACACATCAAGTCGATGCCATGTCCCAAACT-GGTCTT
1 ACACATCAAGTCAATGCCATGT-CCAAACTAGGTCTT
82567762 ACA
1 ACA
82567765 TAGGCTCTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 30 0.88
37 4 0.12
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.25
Consensus pattern (36 bp):
ACACATCAAGTCAATGCCATGTCCAAACTAGGTCTT
Found at i:82568599 original size:58 final size:58
Alignment explanation
Indices: 82568509--82568682 Score: 348
Period size: 58 Copynumber: 3.0 Consensus size: 58
82568499 CTACAAGGGT
82568509 CCGAAAAATGCAAAAATCATCAAGAAAGGCCATCTAAATCACTTACTTGCAAGGAATA
1 CCGAAAAATGCAAAAATCATCAAGAAAGGCCATCTAAATCACTTACTTGCAAGGAATA
82568567 CCGAAAAATGCAAAAATCATCAAGAAAGGCCATCTAAATCACTTACTTGCAAGGAATA
1 CCGAAAAATGCAAAAATCATCAAGAAAGGCCATCTAAATCACTTACTTGCAAGGAATA
82568625 CCGAAAAATGCAAAAATCATCAAGAAAGGCCATCTAAATCACTTACTTGCAAGGAATA
1 CCGAAAAATGCAAAAATCATCAAGAAAGGCCATCTAAATCACTTACTTGCAAGGAATA
82568683 TAAGTGGCTG
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 116 1.00
ACGTcount: A:0.47, C:0.21, G:0.14, T:0.19
Consensus pattern (58 bp):
CCGAAAAATGCAAAAATCATCAAGAAAGGCCATCTAAATCACTTACTTGCAAGGAATA
Found at i:82569245 original size:48 final size:48
Alignment explanation
Indices: 82569192--82569318 Score: 177
Period size: 48 Copynumber: 2.6 Consensus size: 48
82569182 ATATAAGTGC
*
82569192 CGATGCCATGTCCCAGATATGGTCTTACACTACCACACATATCATCAC-T
1 CGATGCCATGTCCCAGACATGGTCTTACACTACCACACATATCA--ACGT
**
82569241 -GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTACCACACATATCAACGT
* *
82569288 CAATGCCATGTCCTAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
82569319 GGATCTCATT
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
46 2 0.03
47 1 0.01
48 68 0.96
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTACCACACATATCAACGT
Found at i:82571589 original size:3 final size:3
Alignment explanation
Indices: 82571581--82571614 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
82571571 TAAGGTTGAG
82571581 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
82571615 GCCTATTCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:82575458 original size:19 final size:19
Alignment explanation
Indices: 82575436--82575480 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
82575426 TTTAAATGCT
*
82575436 TGTAATTATTTGAAATGAA
1 TGTAATTAATTGAAATGAA
*
82575455 TGT-ATGTAATTGAAATGTA
1 TGTAAT-TAATTGAAATGAA
82575474 TGTAATT
1 TGTAATT
82575481 GAATAAATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 2 0.09
19 18 0.82
20 2 0.09
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (19 bp):
TGTAATTAATTGAAATGAA
Found at i:82575473 original size:15 final size:15
Alignment explanation
Indices: 82575453--82575483 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
82575443 ATTTGAAATG
82575453 AATGTATGTAATTGA
1 AATGTATGTAATTGA
82575468 AATGTATGTAATTGA
1 AATGTATGTAATTGA
82575483 A
1 A
82575484 TAAATGATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (15 bp):
AATGTATGTAATTGA
Found at i:82575691 original size:24 final size:24
Alignment explanation
Indices: 82575632--82575737 Score: 90
Period size: 24 Copynumber: 4.3 Consensus size: 24
82575622 GTGGACTCAC
* *
82575632 CTCAGCTCGTATGAGCTTATTGATAT
1 CTCAGCTCGTAAGAGCTTACTG-T-T
* *
82575658 ATCAGCTCGTAAGAGATTACTGTT
1 CTCAGCTCGTAAGAGCTTACTGTT
*
82575682 CTCAGCTCGTCAGAGCTTACTGTT
1 CTCAGCTCGTAAGAGCTTACTGTT
* * *
82575706 -TCAACTC-CATAGAGCTTATTGTT
1 CTCAGCTCGTA-AGAGCTTACTGTT
82575729 CATCAGCTC
1 C-TCAGCTC
82575738 AGGAGGAGCT
Statistics
Matches: 65, Mismatches: 12, Indels: 7
0.77 0.14 0.08
Matches are distributed among these distances:
23 18 0.28
24 22 0.34
25 7 0.11
26 18 0.28
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.35
Consensus pattern (24 bp):
CTCAGCTCGTAAGAGCTTACTGTT
Found at i:82575920 original size:19 final size:19
Alignment explanation
Indices: 82575896--82575959 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
82575886 AAAAGTTATG
82575896 TGTTATACAGATGAATTAC
1 TGTTATACAGATGAATTAC
** *
82575915 TGTTATATGGATGAAGTAC
1 TGTTATACAGATGAATTAC
* *
82575934 TGTTTAAACAGATGAGTTAC
1 TG-TTATACAGATGAATTAC
82575954 TGTTAT
1 TGTTAT
82575960 CGAATGATTT
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
19 21 0.60
20 14 0.40
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (19 bp):
TGTTATACAGATGAATTAC
Found at i:82577339 original size:46 final size:45
Alignment explanation
Indices: 82577283--82577458 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
82577273 TATTTGGGCA
*
82577283 TCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
82577329 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
82577376 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATTGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
82577422 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82577459 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 63 0.61
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:82577438 original size:93 final size:93
Alignment explanation
Indices: 82577279--82577450 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
82577269 AGGATATTTG
* * * * *
82577279 GGCATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
82577344 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
82577372 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATTGATGCGAACGCCCGAGCTTGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
82577437 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
82577451 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:82582573 original size:46 final size:45
Alignment explanation
Indices: 82582517--82582692 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
82582507 TATTTGGGCA
82582517 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
82582563 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
82582610 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATTGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
82582656 CCCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82582693 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 63 0.61
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:82582672 original size:93 final size:93
Alignment explanation
Indices: 82582513--82582684 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
82582503 AGGATATTTG
* * * *
82582513 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
82582578 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
82582606 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATTGATGCGAACGCCCGAGCTTGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
82582671 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
82582685 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:82585313 original size:17 final size:17
Alignment explanation
Indices: 82585269--82585316 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 17
82585259 ATAAGGGACA
*
82585269 AATTGATTG-A-GAATG
1 AATTGATTGAATGTATG
*
82585284 AA-TGA-TGATTGTATG
1 AATTGATTGAATGTATG
82585299 AATTGATTGAATGTATG
1 AATTGATTGAATGTATG
82585316 A
1 A
82585317 GAAAAGTATG
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
13 2 0.08
14 3 0.12
15 8 0.31
16 3 0.12
17 10 0.38
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (17 bp):
AATTGATTGAATGTATG
Found at i:82587215 original size:43 final size:42
Alignment explanation
Indices: 82587166--82587334 Score: 182
Period size: 43 Copynumber: 4.0 Consensus size: 42
82587156 TAGGATTTCT
*
82587166 GATATGTGTTCTCGTGTAAGACCACGTCTGGGACATTGGCATC
1 GATATGTGAT-TCGTGTAAGACCACGTCTGGGACATTGGCATC
* *
82587209 GATATGTTATTACGTGTAAGACCATGTCTGGGACATTGGCATC
1 GATATGTGATT-CGTGTAAGACCACGTCTGGGACATTGGCATC
* *
82587252 GA-ATTTGATTCGTGTAAGACC-CTGT-TCGGGACAGTGGCATC
1 GATATGTGATTCGTGTAAGACCAC-GTCT-GGGACATTGGCATC
* * * **
82587293 AATATGTGATGGCATGTAAGACCACGTCTGGGATGTTGGCAT
1 GATATGTGAT-TCGTGTAAGACCACGTCTGGGACATTGGCAT
82587335 TGTACGATAT
Statistics
Matches: 105, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
40 1 0.01
41 27 0.26
42 13 0.12
43 62 0.59
44 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (42 bp):
GATATGTGATTCGTGTAAGACCACGTCTGGGACATTGGCATC
Found at i:82587322 original size:84 final size:84
Alignment explanation
Indices: 82587177--82587334 Score: 203
Period size: 84 Copynumber: 1.9 Consensus size: 84
82587167 ATATGTGTTC
* * * * * *
82587177 TCGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTTATTACGTGTAAGACCATGTCTGGGA
1 TCGTGTAAGACCACGTCTGGGACAGTGGCATCAATATGTGATGACATGTAAGACCACGTCTGGGA
82587242 CATTGGCATCGAATTTGAT
66 CATTGGCATCGAATTTGAT
*
82587261 TCGTGTAAGACC-CTGT-TCGGGACAGTGGCATCAATATGTGATGGCATGTAAGACCACGTCTGG
1 TCGTGTAAGACCAC-GTCT-GGGACAGTGGCATCAATATGTGATGACATGTAAGACCACGTCTGG
**
82587324 GATGTTGGCAT
64 GACATTGGCAT
82587335 TGTACGATAT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
83 2 0.03
84 61 0.97
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (84 bp):
TCGTGTAAGACCACGTCTGGGACAGTGGCATCAATATGTGATGACATGTAAGACCACGTCTGGGA
CATTGGCATCGAATTTGAT
Found at i:82591585 original size:29 final size:31
Alignment explanation
Indices: 82591536--82591594 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
82591526 AATGTGTATC
* *
82591536 TATTTATTTGATGGATGAAAT-T-GAGATAA
1 TATTTATTTAATAGATGAAATGTGGAGATAA
82591565 TATTTATTCTAATAGAT-AAATGTGGAGATA
1 TATTTATT-TAATAGATGAAATGTGGAGATA
82591595 TTAAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 12 0.48
30 7 0.28
31 6 0.24
ACGTcount: A:0.39, C:0.02, G:0.19, T:0.41
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATGTGGAGATAA
Found at i:82593773 original size:17 final size:17
Alignment explanation
Indices: 82593733--82593776 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
82593723 GGGATAAAAA
82593733 GATTGAA-GT-TG-AAT
1 GATTGAATGTATGAAAT
*
82593747 GA-TGATTGTATGAAAT
1 GATTGAATGTATGAAAT
82593763 GATTGAATGTATGA
1 GATTGAATGTATGA
82593777 GAAAAGTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
13 3 0.12
14 4 0.17
15 2 0.08
16 5 0.21
17 10 0.42
ACGTcount: A:0.36, C:0.00, G:0.27, T:0.36
Consensus pattern (17 bp):
GATTGAATGTATGAAAT
Found at i:82593998 original size:36 final size:36
Alignment explanation
Indices: 82593957--82594028 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
82593947 CTGTGATAGT
*
82593957 GTGATGAATCTTGACATTATAAACTATGATTCCATA
1 GTGATGAATCCTGACATTATAAACTATGATTCCATA
82593993 GTGATGAATCCTGACATTATAAACTATGATTCCATA
1 GTGATGAATCCTGACATTATAAACTATGATTCCATA
82594029 TAGTAATAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (36 bp):
GTGATGAATCCTGACATTATAAACTATGATTCCATA
Found at i:82597064 original size:40 final size:40
Alignment explanation
Indices: 82596873--82597057 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
82596863 TCGAATGATG
* * * * *
82596873 TCCGGGCTAAGTCTCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
82596913 TCCGGACTAAGAT-TCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
82596953 TCTGAGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
82596992 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
82597033 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
82597058 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 31 0.26
40 79 0.66
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:82603493 original size:28 final size:28
Alignment explanation
Indices: 82603432--82603611 Score: 285
Period size: 28 Copynumber: 6.5 Consensus size: 28
82603422 TAAATTGTGC
*
82603432 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
82603459 AGTACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
82603487 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
82603515 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
82603542 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
82603570 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
82603597 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82603612 GACTTAATAT
Statistics
Matches: 145, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
27 65 0.45
28 80 0.55
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:82603496 original size:55 final size:55
Alignment explanation
Indices: 82603432--82603611 Score: 290
Period size: 55 Copynumber: 3.3 Consensus size: 55
82603422 TAAATTGTGC
* *
82603432 AGCACTAAGTGTGCGA-ATTGACTATGTAGTACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
82603487 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * *
82603542 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
82603597 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82603612 GACTTAATAT
Statistics
Matches: 118, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
55 92 0.78
56 26 0.22
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:82603571 original size:83 final size:82
Alignment explanation
Indices: 82603432--82603611 Score: 297
Period size: 83 Copynumber: 2.2 Consensus size: 82
82603422 TAAATTGTGC
*
82603432 AGCACTAAGTGTGCGAATTGACTATGTAGTACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
82603497 GTGCGAGTTTGACTATGT
66 GTGCGAG-TTGACTATAT
* *
82603515 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
82603580 GTGCGAGTTGATTATAT
66 GTGCGAGTTGACTATAT
*
82603597 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82603612 GACTTAATAT
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
82 22 0.24
83 69 0.76
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATAT
Found at i:82611552 original size:28 final size:27
Alignment explanation
Indices: 82611495--82611646 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
82611485 TAAATTGTGC
*
82611495 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
82611522 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
82611550 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
82611577 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
82611605 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
82611632 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82611647 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:82611559 original size:55 final size:55
Alignment explanation
Indices: 82611495--82611646 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
82611485 TAAATTGTGC
*
82611495 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
82611550 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
82611605 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
82611647 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:82619161 original size:23 final size:24
Alignment explanation
Indices: 82619112--82619176 Score: 78
Period size: 23 Copynumber: 2.7 Consensus size: 24
82619102 TTGACTATGT
*
82619112 TGCACTAAGTGTGCGAAATGAATA
1 TGCACTAAGTGTGCGAAATGAACA
* *
82619136 TGCACTAA-TGTGCGAATTGACCA
1 TGCACTAAGTGTGCGAAATGAACA
82619159 TGCGCACTAAGTGTGCGA
1 T--GCACTAAGTGTGCGA
82619177 GTTTGACTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
23 13 0.37
24 8 0.23
25 7 0.20
26 7 0.20
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (24 bp):
TGCACTAAGTGTGCGAAATGAACA
Found at i:82619208 original size:27 final size:27
Alignment explanation
Indices: 82619086--82619257 Score: 185
Period size: 27 Copynumber: 6.6 Consensus size: 27
82619076 TAAATTGTAC
82619086 AGCACTAAGTGTGCG-ATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
82619112 TGCACTAAGTGTGCGAAATGA--ATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
82619137 -GCACTAA-TGTGCGAATTGACCATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
82619161 CGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
82619189 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
82619216 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
82619243 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82619258 GATCAATATA
Statistics
Matches: 127, Mismatches: 12, Indels: 13
0.84 0.08 0.09
Matches are distributed among these distances:
23 11 0.09
24 7 0.06
25 12 0.09
26 21 0.17
27 61 0.48
28 15 0.12
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:82622531 original size:27 final size:27
Alignment explanation
Indices: 82622472--82622643 Score: 248
Period size: 27 Copynumber: 6.6 Consensus size: 27
82622462 TAAATTGTGC
82622472 AGCACTAAGTGTGC-A-TT-ACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
82622496 --TA-TAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
82622520 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
82622548 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
82622575 AGCACTAAGTGTGCGAGTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
82622602 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
82622629 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82622644 GACTTAATAT
Statistics
Matches: 136, Mismatches: 5, Indels: 11
0.89 0.03 0.07
Matches are distributed among these distances:
21 9 0.07
22 2 0.01
23 2 0.01
24 7 0.05
26 1 0.01
27 88 0.65
28 27 0.20
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:82622593 original size:82 final size:76
Alignment explanation
Indices: 82622472--82622643 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 76
82622462 TAAATTGTGC
*
82622472 AGCACTAAGTGTGC-ATTACTATGTTATAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA
1 AGCACTAAGTGTGCGATTACTATGTCATAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA
*
82622536 GTTTGACTATGT
66 G-TTGACTATAT
*
82622548 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTGATTATGTAGCACTAAGTG
1 AGCACTAAGTGTGCGA-TT-ACTATGT--CA-TAAGTGTGCGAGTTGACTATGTAGCACTAAGTG
*
82622613 TGCGAGTTGATTATAT
61 TGCGAGTTGACTATAT
*
82622629 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82622644 GACTTAATAT
Statistics
Matches: 85, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
76 14 0.16
77 1 0.01
78 2 0.02
79 7 0.08
81 23 0.27
82 38 0.45
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (76 bp):
AGCACTAAGTGTGCGATTACTATGTCATAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA
GTTGACTATAT
Found at i:82643607 original size:24 final size:24
Alignment explanation
Indices: 82643577--82643684 Score: 103
Period size: 24 Copynumber: 4.5 Consensus size: 24
82643567 AGAAAATTAG
* * *
82643577 CACATAGTGCCACGCTAACCCGCA
1 CACATAGTGCCACTCAAATCCGCA
* * *
82643601 CACATAGTGCC-TTCCTAATCCACA
1 CACATAGTGCCACT-CAAATCCGCA
*
82643625 CA-AGTAGTGCCATTCAAATCCGCA
1 CACA-TAGTGCCACTCAAATCCGCA
* *
82643649 CACATAGTGCCATTCAAATTCGCA
1 CACATAGTGCCACTCAAATCCGCA
82643673 CACATAGTGCCA
1 CACATAGTGCCA
82643685 ATGTCATTTC
Statistics
Matches: 73, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
23 1 0.01
24 69 0.95
25 3 0.04
ACGTcount: A:0.31, C:0.34, G:0.14, T:0.20
Consensus pattern (24 bp):
CACATAGTGCCACTCAAATCCGCA
Found at i:82643681 original size:48 final size:46
Alignment explanation
Indices: 82643577--82643684 Score: 119
Period size: 48 Copynumber: 2.3 Consensus size: 46
82643567 AGAAAATTAG
* *
82643577 CACATAGTGCCACGCTAACCCGCACACATAGTGCCTTCCTAATCCA
1 CACATAGTGCCACGCAAACCCGCACACATAGTGCCTTCCAAATCCA
** *
82643623 CACAAGTAGTGCCATTCAAATCCGCACACATAGTGCCATT-CAAATTCGCA
1 CAC-A-TAGTGCCACGCAAACCCGCACACATAGTGCC-TTCCAAA-TC-CA
82643673 CACATAGTGCCA
1 CACATAGTGCCA
82643685 ATGTCATTTC
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
46 3 0.06
47 1 0.02
48 38 0.73
49 5 0.10
50 5 0.10
ACGTcount: A:0.31, C:0.34, G:0.14, T:0.20
Consensus pattern (46 bp):
CACATAGTGCCACGCAAACCCGCACACATAGTGCCTTCCAAATCCA
Found at i:82658542 original size:50 final size:50
Alignment explanation
Indices: 82658484--82658806 Score: 301
Period size: 50 Copynumber: 6.4 Consensus size: 50
82658474 GTCACGTGTC
* * * *
82658484 TAGTACTAAGTGCAGGCTGCTATC-TGTACCAGATTGTTAGGTTGCATGTG
1 TAGTACTAAGTGCAGGCTACTA-CGTGTATCAGATTGATAGGTCGCATGTG
* * * * * * * ** *
82658534 CAGTACTAAGTGCAAGCTGCTATGCGTAATC-GATAGTTTCG-AGCATGTGTG
1 TAGTACTAAGTGCAGGCTACTACGTGT-ATCAGATTGATAGGTCGCA--TGTG
* * * * * *
82658585 TAGTACTAAGTCCAGGCTACTACGTGTATCAAATAGTTAGGTCACGTGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGATAGGTCGCATGTG
**
82658635 TAGTACTAAGTGCAGGCTACTACGTGTATTGGATTGATAGGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGATAGGTCGCATGTG
* * * * ***
82658685 TAGTGCTAAGTGCAGGCTACTACGTGTATAAGATGGATAAGTCATGTGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGATAGGTCGCATGTG
* * *
82658735 TAGTACTAAGTGTAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGATAGGTCGCATGTG
82658785 TAGTACTAAGTGCAGGCTACTA
1 TAGTACTAAGTGCAGGCTACTA
82658807 TGCATACTAG
Statistics
Matches: 219, Mismatches: 48, Indels: 12
0.78 0.17 0.04
Matches are distributed among these distances:
49 3 0.01
50 181 0.83
51 34 0.16
52 1 0.00
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (50 bp):
TAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGATAGGTCGCATGTG
Found at i:82658703 original size:100 final size:100
Alignment explanation
Indices: 82658581--82658806 Score: 337
Period size: 100 Copynumber: 2.3 Consensus size: 100
82658571 TTCGAGCATG
* * *
82658581 TGTGTAGTACTAAGTCCAGGCTACTACGTGTATCAA-ATAGTTAGGTCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAT-AAGATAGATAAGTCACGTGTGTAGTACTAAG
****
82658645 TGCAGGCTACTACGTGTATTGGATTGATAGGTCGCA
65 TGCAGGCTACTACGTGTACCAAATTGATAGGTCGCA
* * *
82658681 TGTGTAGTGCTAAGTGCAGGCTACTACGTGTATAAGATGGATAAGTCATGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATAGATAAGTCACGTGTGTAGTACTAAGT
*
82658746 GTAGGCTACTACGTGTACCAAATTGATAGGTCGCA
66 GCAGGCTACTACGTGTACCAAATTGATAGGTCGCA
82658781 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
82658807 TGCATACTAG
Statistics
Matches: 113, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
99 2 0.02
100 111 0.98
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATAGATAAGTCACGTGTGTAGTACTAAGT
GCAGGCTACTACGTGTACCAAATTGATAGGTCGCA
Found at i:82659038 original size:16 final size:16
Alignment explanation
Indices: 82659017--82659048 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82659007 AGAATGGAGT
82659017 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
82659033 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
82659049 TAAAACATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:82662153 original size:15 final size:14
Alignment explanation
Indices: 82662094--82662153 Score: 66
Period size: 15 Copynumber: 4.1 Consensus size: 14
82662084 CATGATGTTG
82662094 TATCTTGGATTTCCT
1 TATCTTGGATTT-CT
*
82662109 TATCCTGGATTTCT
1 TATCTTGGATTTCT
*
82662123 CTATCTTGGACTTCT
1 -TATCTTGGATTTCT
*
82662138 TAATCTTGGTTTTCT
1 T-ATCTTGGATTTCT
82662153 T
1 T
82662154 GTTATCTATA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
14 3 0.08
15 35 0.92
ACGTcount: A:0.13, C:0.20, G:0.13, T:0.53
Consensus pattern (14 bp):
TATCTTGGATTTCT
Found at i:82664751 original size:18 final size:20
Alignment explanation
Indices: 82664715--82664761 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
82664705 AGTTGTAAGT
82664715 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
82664735 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
82664754 ATGATATA
1 AT-ATATA
82664762 ATATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:82665232 original size:50 final size:50
Alignment explanation
Indices: 82665113--82665596 Score: 462
Period size: 50 Copynumber: 9.6 Consensus size: 50
82665103 ATTGTGAGAA
* * * *
82665113 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTT-TTACGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAG--A-TTGTTAGGT
* *
82665165 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTGTTAGGT
* * * * *
82665215 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CTTGATAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATC-AGATTG-TTAGGT
* *
82665266 CACATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGA-TGCTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTG-TTAGGT
* * * *
82665316 CACGTGTGTAGTAC-AAGTGCAGGCTACTATGTGTACCGGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTGTTAGGT
* * * * * *
82665365 CGCATGTGTAGTAATAAGTGCAGGCTGCTATGTGTACCGGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTGTTAGGT
* *** * * *
82665415 CGCATGTGTAGTACTAAGTGCAGGCTGA-TATGCAAACTC-G-TTAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCT-ACTATGTGTA-TCAGATT--GTTAGGT
* * * *
82665466 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTGTTAGGT
* * * * *
82665516 CACGTATGTAGTAC-AAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTGTTAGGT
*
82665565 CGCATGTGTAGTACTAAGTGCAGGCTACTATG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATG
82665597 CATACCTGAG
Statistics
Matches: 357, Mismatches: 61, Indels: 30
0.80 0.14 0.07
Matches are distributed among these distances:
49 86 0.24
50 161 0.45
51 73 0.20
52 37 0.10
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTGTTAGGT
Found at i:82665373 original size:24 final size:24
Alignment explanation
Indices: 82665344--82665424 Score: 69
Period size: 24 Copynumber: 3.3 Consensus size: 24
82665334 GCAGGCTACT
82665344 ATGTGTACCGGATTGATAGGTCGC
1 ATGTGTACCGGATTGATAGGTCGC
* * *
82665368 ATGTGTA--GTAATAAGTGCAGG-CTGC
1 ATGTGTACCGGATTGA-T--AGGTC-GC
82665393 TATGTGTACCGGATTGATAGGTCGC
1 -ATGTGTACCGGATTGATAGGTCGC
82665418 ATGTGTA
1 ATGTGTA
82665425 GTACTAAGTG
Statistics
Matches: 43, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
22 4 0.09
23 1 0.02
24 15 0.35
25 10 0.23
26 8 0.19
27 1 0.02
28 4 0.09
ACGTcount: A:0.23, C:0.14, G:0.32, T:0.31
Consensus pattern (24 bp):
ATGTGTACCGGATTGATAGGTCGC
Found at i:82665520 original size:200 final size:200
Alignment explanation
Indices: 82665169--82665596 Score: 660
Period size: 200 Copynumber: 2.1 Consensus size: 200
82665159 TTACGTCACG
* * *
82665169 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCACATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGT
** * ** *
82665234 GCAGGCTACTATGCGTACTTGATAGTTTCGATCACATGTGTAGTACTAAGTGTAGGCTACTACGT
66 GCAGGCTACTATGCAAACTCGATAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTACTACGT
* * * * *
82665299 GTATCAGATGCTTAGGTCACGTGTGTAGTACAAGTGCAGGCTACTATGTGTACCGGATTGATAGG
131 GTATCAGATGCATAAGTCACGTATGTAGTACAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
82665364 TCGCA
196 TCGCA
* * * *
82665369 TGTGTAGTAATAAGTGCAGGCTGCTATGTGTACCGGATTGATAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGT
*
82665434 GCAGGCTGA-TATGCAAACTCGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTACTACG
66 GCAGGCT-ACTATGCAAACTCGATAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTACTACG
*
82665498 TGTATCAGATGGATAAGTCACGTATGTAGTACAAGTGCAGGCTACTACGTGTACCAGATTGATAG
130 TGTATCAGATGCATAAGTCACGTATGTAGTACAAGTGCAGGCTACTACGTGTACCAGATTGATAG
82665563 GTCGCA
195 GTCGCA
82665569 TGTGTAGTACTAAGTGCAGGCTACTATG
1 TGTGTAGTACTAAGTGCAGGCTACTATG
82665597 CATACCTGAG
Statistics
Matches: 205, Mismatches: 22, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
200 204 1.00
201 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (200 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGT
GCAGGCTACTATGCAAACTCGATAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTACTACGT
GTATCAGATGCATAAGTCACGTATGTAGTACAAGTGCAGGCTACTACGTGTACCAGATTGATAGG
TCGCA
Found at i:82665613 original size:150 final size:150
Alignment explanation
Indices: 82665164--82665613 Score: 516
Period size: 150 Copynumber: 3.0 Consensus size: 150
82665154 CAGTTTTACG
*
82665164 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGATAGGTCACATGTGTAGTAC
* ** * * * * * *
82665229 TAAGTGCAGGCTACTATGCGTACTTGATAGTTTCGATCACATGTGTAGTACTAAGTGTAGGCTAC
66 -AAGTGCAGGCTACTATGTGTACCAGATTG-ATAGGTCGCATGTGTAGTACTAAGTGCAGGCTAC
* ** * *
82665294 TACGTGTA--TCAGATGCTTAGG
129 TATGCATACCTCAGA-GCTTCGA
* * * *
82665315 TCACGTGTGTAGTAC-AAGTGCAGGCTACTATGTGTACCGGATTGATAGGTCGCATGTGTAGTAA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGATAGGTCACATGTGTAGT-A
* * *
82665379 TAAGTGCAGGCTGCTATGTGTACCGGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTGA-
65 CAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCT-AC
* *
82665443 TATGCA-AACTC-GTTAACTTCGA
129 TATGCATACCTCAG--AGCTTCGA
* * * * *
82665465 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGTCACGTATGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGATAGGTCACATGTGTAGTAC
*
82665530 AAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
66 AAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
*
82665595 TGCATACCTGAGAGCTTCG
131 TGCATACCTCAGAGCTTCG
82665614 GTTAAAAGGG
Statistics
Matches: 251, Mismatches: 38, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
148 1 0.00
149 32 0.13
150 158 0.63
151 59 0.24
152 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (150 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGATAGGTCACATGTGTAGTAC
AAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
TGCATACCTCAGAGCTTCGA
Found at i:82665827 original size:16 final size:16
Alignment explanation
Indices: 82665806--82665837 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82665796 AGAATGGAGT
82665806 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
82665822 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
82665838 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:82675769 original size:40 final size:40
Alignment explanation
Indices: 82675739--82675922 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
82675729 GCTACTCGTT
*
82675739 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
82675779 CAATTGCCTTCGGTACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
82675819 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* ** * * *
82675858 CAAATGCCTTC-GGATCTTAGTCCGGACATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
82675899 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
82675923 ACATCATTCA
Statistics
Matches: 120, Mismatches: 16, Indels: 16
0.79 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 73 0.61
41 14 0.12
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:82675857 original size:79 final size:82
Alignment explanation
Indices: 82675739--82675923 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
82675729 GCTACTCGTT
* * *
82675739 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGG-TACTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGAT-CTTAACCC
** *
82675802 GGATTTAGTAAC-TCGCA
65 GGACATAGTAACTTAGCA
* **
82675819 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
82675882 GACATGGTCACTTAGCA
66 GACATAGTAACTTAGCA
82675899 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82675924 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
79 55 0.61
80 35 0.39
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GACATAGTAACTTAGCA
Found at i:82683732 original size:24 final size:25
Alignment explanation
Indices: 82683678--82683732 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
82683668 GCTTATTCGG
82683678 GCTTAATAACAGAAAACTCATAAGA
1 GCTTAATAACAGAAAACTCATAAGA
* * **
82683703 GTTTAA-AACAGAAAGCTCATGTGA
1 GCTTAATAACAGAAAACTCATAAGA
82683727 GCTTAA
1 GCTTAA
82683733 CGAGATAACT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 20 0.80
25 5 0.20
ACGTcount: A:0.45, C:0.15, G:0.16, T:0.24
Consensus pattern (25 bp):
GCTTAATAACAGAAAACTCATAAGA
Found at i:82685544 original size:24 final size:24
Alignment explanation
Indices: 82685514--82685577 Score: 92
Period size: 24 Copynumber: 2.7 Consensus size: 24
82685504 TAGAACACCA
*
82685514 TACGAACCCTTATCACCAGACATG
1 TACGAACCCCTATCACCAGACATG
* * *
82685538 TGCGAACCCCTATCACTAGTCATG
1 TACGAACCCCTATCACCAGACATG
82685562 TACGAACCCCTATCAC
1 TACGAACCCCTATCAC
82685578 ATGGTACATA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.30, C:0.36, G:0.12, T:0.22
Consensus pattern (24 bp):
TACGAACCCCTATCACCAGACATG
Found at i:82685682 original size:32 final size:32
Alignment explanation
Indices: 82685640--82685724 Score: 89
Period size: 32 Copynumber: 2.7 Consensus size: 32
82685630 ATTGTATGTG
*
82685640 ATGTGTGAACCTATGTTGTGTAACTGCATATA
1 ATGTGCGAACCTATGTTGTGTAACTGCATATA
* * * * * *
82685672 ATGTGCGAACCTATGTTATTTGACTGTATGTG
1 ATGTGCGAACCTATGTTGTGTAACTGCATATA
* *
82685704 ATGTACGAACCTATGCTGTGT
1 ATGTGCGAACCTATGTTGTGT
82685725 GATTGTGTGT
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.38
Consensus pattern (32 bp):
ATGTGCGAACCTATGTTGTGTAACTGCATATA
Found at i:82685814 original size:23 final size:23
Alignment explanation
Indices: 82685788--82685832 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
82685778 GATATAGAAA
*
82685788 CCTACATTAAACTGATATGTGAG
1 CCTACAGTAAACTGATATGTGAG
* **
82685811 CCTATAGTAATTTGATATGTGA
1 CCTACAGTAAACTGATATGTGA
82685833 ATTGTGATTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (23 bp):
CCTACAGTAAACTGATATGTGAG
Found at i:82696357 original size:40 final size:40
Alignment explanation
Indices: 82696261--82696444 Score: 230
Period size: 40 Copynumber: 4.5 Consensus size: 40
82696251 TATTCGGATG
* *
82696261 ATATCCGGGCTCAGTCCCGAAGGCATTTGTG-TGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGT-G--ACT
*
82696304 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
82696344 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
82696384 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
82696424 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
82696445 ATACTTGGGC
Statistics
Matches: 127, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
39 13 0.10
40 78 0.61
41 2 0.02
42 1 0.01
43 32 0.25
44 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:82707513 original size:40 final size:40
Alignment explanation
Indices: 82707445--82707611 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
82707435 CGAGGTTTAG
** *
82707445 CCGGATATAACCACTCGCAC-AA-GCCTTCGGGTCTTAAC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * * *
82707483 GCGGATATGGTCACTAGCATAAATGCCTTCGGGACTCAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * **
82707523 CCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
82707563 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTATC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAAC
82707604 CCGGATAT
1 CCGGATAT
82707612 CATTCGAGTA
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
38 14 0.14
39 2 0.02
40 58 0.57
41 28 0.27
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:82708839 original size:38 final size:38
Alignment explanation
Indices: 82708797--82708872 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
82708787 CAAGAACTCC
82708797 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
82708835 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
82708873 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:82715649 original size:41 final size:40
Alignment explanation
Indices: 82715514--82715658 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
82715504 CTCGCACAAG
* * * * *
82715514 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
82715554 GCCTTCGGGACTCAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
82715594 GCCTTC-GGATCTTAGTCTGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
82715635 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
82715659 CATTCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.03
40 56 0.64
41 26 0.30
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:82716891 original size:37 final size:38
Alignment explanation
Indices: 82716845--82716919 Score: 143
Period size: 37 Copynumber: 2.0 Consensus size: 38
82716835 CAAGAACTCC
82716845 TTCCTCCTTCCTTAGAATTTTC-GCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
82716882 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
82716920 AAAGGATGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 22 0.59
38 15 0.41
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:82727233 original size:46 final size:46
Alignment explanation
Indices: 82727183--82727358 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
82727173 TGGTTGAGCA
82727183 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
82727229 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGTAAATAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAAAT--G
* * * *
82727274 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
82727322 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82727359 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 1 0.01
43 9 0.08
44 1 0.01
45 1 0.01
46 63 0.57
47 26 0.23
48 1 0.01
49 1 0.01
50 7 0.06
51 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:82727339 original size:93 final size:93
Alignment explanation
Indices: 82727180--82727350 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
82727170 GGATGGTTGA
* *
82727180 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
82727245 TGAGTCCGAGTTCGAGAGATGTAAATAG
66 TGAGTCCGAGTTCGAGAGATGTAAATAG
* * * *
82727273 GCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
82727338 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
82727351 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAAATAG
Found at i:82730316 original size:15 final size:15
Alignment explanation
Indices: 82730277--82730356 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
82730267 GTATCTTGGG
*
82730277 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
82730292 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
82730307 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
* *
82730322 TTTCTCTA-TCTTAGA
1 TTTCTTTATTC-TGGA
*
82730337 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
82730351 TTTCTT
1 TTTCTT
82730357 GTTATCTTTG
Statistics
Matches: 51, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
14 9 0.18
15 40 0.78
16 2 0.04
ACGTcount: A:0.11, C:0.19, G:0.12, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:82735774 original size:46 final size:48
Alignment explanation
Indices: 82735640--82735903 Score: 230
Period size: 46 Copynumber: 5.6 Consensus size: 48
82735630 GTATAATGAT
* * * * *
82735640 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATATCCAT-GCT
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCT-ACATCT-CATAGCC
* *
82735690 GATGCCATGTCCCAGGCATGGTCTTACACT-G-AC-ACATCTCATAGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTACATCTCATAGCC
*
82735736 GATG-CATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGA-GGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCTACATCTC-ATAGCC
* * *
82735782 GATG-CATGTCCCAGACATGTCGTACACTAGCTCT-CGTCTCA-ATGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCATA-GCC
* * * *
82735828 GATGCCATGTCCAAGACATGTTCTTACACTGGCTCT-CATAAT-GTGGCC
1 GATGCCATGTCCCAGACATG-TCTTACACTGGCTCTACAT-CTCATAGCC
82735876 GATG-CATGTCCCAGACATGTCTTACACT
1 GATGCCATGTCCCAGACATGTCTTACACT
82735904 AGCACACAAA
Statistics
Matches: 182, Mismatches: 21, Indels: 26
0.79 0.09 0.11
Matches are distributed among these distances:
44 10 0.05
45 18 0.10
46 71 0.39
47 30 0.16
48 23 0.13
49 2 0.01
50 28 0.15
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCATAGCC
Found at i:82735856 original size:94 final size:94
Alignment explanation
Indices: 82735640--82735911 Score: 306
Period size: 94 Copynumber: 2.9 Consensus size: 94
82735630 GTATAATGAT
* * * * * *
82735640 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATATCCATGCTGATGCCATGTCCCAG
1 GATGCCATGTCCAAGACAT-GTCTTACACTGGCTCT-ACATATCGAGGCCGATG-CATGTCCCAG
*
82735705 GCATGGTCTTACACT-G-ACACATCTCATAGCC
63 ACAT-GTCTTACACTAGCACACATCTCATAGCC
* *
82735736 GATG-CATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCCGATGCATGTCCCAGACA
1 GATGCCATGTCCAAGACATGTCTTACACTGGCTCTACATATCGAGGCCGATGCATGTCCCAGACA
* * * *
82735799 TGTCGTACACTAGCTCTCGTCTCA-ATGCC
66 TGTCTTACACTAGCACACATCTCATA-GCC
*
82735828 GATGCCATGTCCAAGACATGTTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCCCAGA
1 GATGCCATGTCCAAGACATG-TCTTACACTGGCTCTACAT-ATCGAGGCCGATGCATGTCCCAGA
82735891 CATGTCTTACACTAGCACACA
64 CATGTCTTACACTAGCACACA
82735912 AATAACCCGA
Statistics
Matches: 150, Mismatches: 19, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
90 9 0.06
91 15 0.10
92 26 0.17
93 15 0.10
94 66 0.44
95 15 0.10
96 4 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (94 bp):
GATGCCATGTCCAAGACATGTCTTACACTGGCTCTACATATCGAGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGCACACATCTCATAGCC
Found at i:82735898 original size:140 final size:141
Alignment explanation
Indices: 82735640--82735903 Score: 347
Period size: 140 Copynumber: 1.9 Consensus size: 141
82735630 GTATAATGAT
* * * * *
82735640 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATATCCATGCTGATGCCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCGTACACTAGCTCTCA-ATATCAATGCCGATGCCATGTCCAAG
* *
82735705 GCATGGTCTTACACTGACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTA
65 ACATGGTCTTACACTGACACATCTAATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTA
82735770 CATCTCGAGGCC
130 CATCTCGAGGCC
* *
82735782 GATG-CATGTCCCAGACAT-GTCGTACACTAGCTCTC-GTCTCAATGCCGATGCCATGTCCAAGA
1 GATGCCATGTCCCAGACATGGTCGTACACTAGCTCTCAATATCAATGCCGATGCCATGTCCAAGA
* * * *
82735844 CATGTTCTTACACTGGCTC-TCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACACT
66 CATGGTCTTACACTGACACATC-TAA--TAGCCGATGCATGTCCCAGACATGTCTTACACT
82735904 AGCACACAAA
Statistics
Matches: 106, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
137 2 0.02
138 39 0.37
140 48 0.45
141 13 0.12
142 4 0.04
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (141 bp):
GATGCCATGTCCCAGACATGGTCGTACACTAGCTCTCAATATCAATGCCGATGCCATGTCCAAGA
CATGGTCTTACACTGACACATCTAATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAC
ATCTCGAGGCC
Found at i:82749886 original size:39 final size:40
Alignment explanation
Indices: 82749841--82749972 Score: 167
Period size: 40 Copynumber: 3.3 Consensus size: 40
82749831 GCTCCTCGTT
* * *
82749841 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
82749881 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
82749920 CGAACGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
82749960 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
82749973 ATCTTAGTCC
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 34 0.43
40 45 0.57
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:82759452 original size:32 final size:32
Alignment explanation
Indices: 82759416--82759480 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
82759406 CCTTTTCATA
*
82759416 TTTCATATTGCATAACACTGGGCCGAAGCCTT
1 TTTCATATTGCATAACACTGGGCAGAAGCCTT
* **
82759448 TTTCATATTTCATATTACTGGGCAGAAGCCTT
1 TTTCATATTGCATAACACTGGGCAGAAGCCTT
82759480 T
1 T
82759481 ATTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.37
Consensus pattern (32 bp):
TTTCATATTGCATAACACTGGGCAGAAGCCTT
Found at i:82761376 original size:68 final size:66
Alignment explanation
Indices: 82761303--82761474 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
82761293 CATCATGTGT
* * * *
82761303 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
82761366 TGTAG
62 TGTAG
** * *
82761371 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
82761436 AG
65 AG
* * * *
82761438 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
82761475 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:82761408 original size:64 final size:64
Alignment explanation
Indices: 82761327--82761510 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
82761317 AGACATTATG
* * *
82761327 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
82761391 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
82761456 AA
63 AA
* * *
82761458 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
82761511 CAAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:82763253 original size:26 final size:26
Alignment explanation
Indices: 82763224--82763285 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
82763214 GGGGTGTTAC
*
82763224 AAGCCCTTTTCGATAAACTGGGGCGT
1 AAGCCCTTTTCGATAAACTGGGGCAT
* *
82763250 AAGCCATTTTCGGTAAACTGGGGCAT
1 AAGCCCTTTTCGATAAACTGGGGCAT
*
82763276 AAACCCTTTT
1 AAGCCCTTTT
82763286 GCACTTCCTC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (26 bp):
AAGCCCTTTTCGATAAACTGGGGCAT
Found at i:82763354 original size:18 final size:19
Alignment explanation
Indices: 82763331--82763376 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
82763321 GCATTTATGA
82763331 ATAC-ATCATGTGCATATC
1 ATACAATCATGTGCATATC
*
82763349 ATACATATGATGTGCATATC
1 ATACA-ATCATGTGCATATC
82763369 ATATCAAT
1 ATA-CAAT
82763377 ATTGTATATC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 4 0.17
20 18 0.75
21 2 0.08
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (19 bp):
ATACAATCATGTGCATATC
Found at i:82773158 original size:46 final size:46
Alignment explanation
Indices: 82773091--82773260 Score: 166
Period size: 46 Copynumber: 3.7 Consensus size: 46
82773081 TGTAACCCGC
* * * *
82773091 CCATAAGCGAATTCCGACTCAACTCAATGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * **
82773137 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATG--T--TCGCAT
* * *
82773187 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* *
82773230 CCATAAGTGAACCCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
82773261 TTCGAATGCC
Statistics
Matches: 99, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 3 0.03
46 55 0.56
47 28 0.28
48 3 0.03
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:82775840 original size:49 final size:49
Alignment explanation
Indices: 82775762--82776007 Score: 253
Period size: 49 Copynumber: 5.0 Consensus size: 49
82775752 GTAGCCGAAG
* * *
82775762 CTATCTGGTACGCA-TAGTAGCATGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTAC-AAGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * *
82775811 TTATCCGGTACAAGTAGTAGCCTGCACTTAGTAATACACACGTGACCTAA
1 CTATCTGGTACAAGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
* * * * * *
82775861 CCATCTGATACACGTAGTAGCTTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACAAGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * * *
82775911 GTTATCAGGTACGCA-TAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -CTATCTGGTAC-AAGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * *
82775961 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CTATCTGGTACAAGTAGTAGCCTGCACTTAGTACTACACACGCGACC
82776008 TCACAATAGC
Statistics
Matches: 159, Mismatches: 32, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
48 1 0.01
49 77 0.48
50 45 0.28
51 36 0.23
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (49 bp):
CTATCTGGTACAAGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:82776689 original size:30 final size:30
Alignment explanation
Indices: 82776655--82776714 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
82776645 CTTTAATACG
*
82776655 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTCTGCCCCTA
* *
82776685 AACTTTTGCATAATTACACTTCTGCCCCTA
1 AACTTTGGCAAAATTACACTTCTGCCCCTA
82776715 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.08, T:0.35
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTCTGCCCCTA
Found at i:82778792 original size:15 final size:15
Alignment explanation
Indices: 82778763--82778801 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
82778753 AACAGAGAAG
82778763 CCAAGAATAAAGAAAT
1 CCAAG-ATAAAGAAAT
82778779 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
*
82778794 CCATGATA
1 CCAAGATA
82778802 CGAAAATCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.56, C:0.15, G:0.13, T:0.15
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:82794049 original size:37 final size:37
Alignment explanation
Indices: 82793990--82794060 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
82793980 AGCTCAGACG
*
82793990 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
82794027 AAATCTCCACACGTAGTCATCGGGTCTTACCCGG
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGG
82794061 GATATATTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:82794320 original size:47 final size:47
Alignment explanation
Indices: 82794268--82794414 Score: 208
Period size: 47 Copynumber: 3.1 Consensus size: 47
82794258 CATACATATT
* * * *
82794268 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
82794315 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
82794362 TCACATTGGCCATTCGGCCTTATCACATATATAGACA--TTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATAT-G-CATGTTCACATTCA
82794409 TCACAT
1 TCACAT
82794415 AAAATCCTAA
Statistics
Matches: 90, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
47 87 0.97
48 1 0.01
49 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:82794340 original size:22 final size:22
Alignment explanation
Indices: 82794314--82794389 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
82794304 GTTCATATTC
82794314 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
82794336 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
82794360 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
82794383 ATCACAT
1 ATCACAT
82794390 ATATAGACAT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.29
23 12 0.29
24 12 0.29
25 5 0.12
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:82798549 original size:25 final size:25
Alignment explanation
Indices: 82798512--82798563 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
82798502 AAGGAATTCG
82798512 CACACACACAGTGC-CTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
* *
82798537 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
82798562 CA
1 CA
82798564 TTATTACAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.29
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:82798783 original size:40 final size:40
Alignment explanation
Indices: 82798739--82799168 Score: 774
Period size: 40 Copynumber: 10.8 Consensus size: 40
82798729 CCAGCATGAT
* *
82798739 TGCTCTTCGGGACCTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82798779 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
82798819 TGCTCTTTGGGACTTAGCCCGCATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
82798859 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
82798899 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
82798939 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
82798979 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
82799019 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
82799059 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82799099 TGCTC-TC-GGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82799137 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
82799169 CTCAATTCTC
Statistics
Matches: 379, Mismatches: 9, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
38 35 0.09
39 4 0.01
40 340 0.90
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:82800496 original size:37 final size:37
Alignment explanation
Indices: 82800437--82800544 Score: 189
Period size: 37 Copynumber: 2.9 Consensus size: 37
82800427 AGCTCAGACG
* *
82800437 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
82800474 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
82800511 TAATCTCCACACGTAGTCATCGGGTCTTACCCGG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGG
82800545 GATATATTTC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:82800804 original size:47 final size:47
Alignment explanation
Indices: 82800752--82800898 Score: 213
Period size: 47 Copynumber: 3.1 Consensus size: 47
82800742 CATACATATT
* * * *
82800752 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
82800799 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
82800846 TCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
82800893 TCACAT
1 TCACAT
82800899 AAAATCCTAA
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 89 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:82800824 original size:22 final size:22
Alignment explanation
Indices: 82800798--82800873 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
82800788 GTTCATATTC
82800798 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
82800820 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
82800844 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
82800867 ATCACAT
1 ATCACAT
82800874 ATATACACAT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.29
23 12 0.29
24 12 0.29
25 5 0.12
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:82809234 original size:28 final size:28
Alignment explanation
Indices: 82809194--82809294 Score: 139
Period size: 28 Copynumber: 3.6 Consensus size: 28
82809184 TAGTTCGACA
* *
82809194 TGATGGGCCATATGCATGTGATTAGGCC
1 TGATGGGCCATATGAATGTGATTGGGCC
82809222 TGATGGGCCATATGAATGTGATTGGGCC
1 TGATGGGCCATATGAATGTGATTGGGCC
* *
82809250 TGATGGGCCATGTGAATGAGATTGGGCC
1 TGATGGGCCATATGAATGTGATTGGGCC
* * *
82809278 TAAAGGGCCAAATGAAT
1 TGATGGGCCATATGAAT
82809295 AAGTGTGGAT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.26, C:0.15, G:0.34, T:0.26
Consensus pattern (28 bp):
TGATGGGCCATATGAATGTGATTGGGCC
Found at i:82809624 original size:27 final size:26
Alignment explanation
Indices: 82809594--82810077 Score: 368
Period size: 27 Copynumber: 18.1 Consensus size: 26
82809584 TAATAAAGAG
*
82809594 AAATTATCGAAATACCCTCGATTTGTA
1 AAATTA-CAAAATACCCTCGATTTGTA
* *
82809621 AAATTACCAAAATACCC-CCAGTTTATA
1 AAATTA-CAAAATACCCTCGA-TTTGTA
* *
82809648 AAATTACCAAAATTCCC-CCAGTTTGTA
1 AAATTA-CAAAATACCCTCGA-TTTGTA
* *
82809675 AAATTACTGAAATA-CCTTGATTTGTA
1 AAATTAC-AAAATACCCTCGATTTGTA
*
82809701 AAATTATCGAAATACTCCT-GATTTGTA
1 AAATTA-CAAAATAC-CCTCGATTTGTA
*
82809728 AAATTACTAAAATACCCTCGA-TTGTG
1 AAATTAC-AAAATACCCTCGATTTGTA
* *
82809754 AAATTACTAAAATACCTTTGATTTGTA
1 AAATTAC-AAAATACCCTCGATTTGTA
*
82809781 AAATTATCGAAATACCCTCGATTTGTA
1 AAATTA-CAAAATACCCTCGATTTGTA
* * *
82809808 AAATTACCAAAATACCCCCAATTTGTG
1 AAATTA-CAAAATACCCTCGATTTGTA
* * * * *
82809835 AAACTACTGAAACACCCTCGAATTGTG
1 AAATTAC-AAAATACCCTCGATTTGTA
* * *
82809862 AAATTACCAAAACACCTTTGATTTGTA
1 AAATTA-CAAAATACCCTCGATTTGTA
* * * *
82809889 AAATTACCGACACACCCTCAATTTGTA
1 AAATTA-CAAAATACCCTCGATTTGTA
* * * *
82809916 AAATTACCAAATAACCTTC-AATTGTG
1 AAATTACAAAAT-ACCCTCGATTTGTA
82809942 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTAC-AAAATACCCTCGATTTGTA
* * * *
82809969 AAATTATCAAAATACCTTCAATTTTTG
1 AAATTA-CAAAATACCCTCGATTTGTA
*
82809996 AAATTACCAAAATACCCTCGATTTGTG
1 AAATTA-CAAAATACCCTCGATTTGTA
** *
82810023 AAATTATTGAAACACCCTCGATTTGTA
1 AAATTA-CAAAATACCCTCGATTTGTA
** *
82810050 AAATTATGAAACACCCTCGATTTGTA
1 AAATTACAAAATACCCTCGATTTGTA
82810076 AA
1 AA
82810078 CCAACATAAC
Statistics
Matches: 378, Mismatches: 63, Indels: 33
0.80 0.13 0.07
Matches are distributed among these distances:
26 93 0.25
27 279 0.74
28 6 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (26 bp):
AAATTACAAAATACCCTCGATTTGTA
Found at i:82809804 original size:107 final size:106
Alignment explanation
Indices: 82809594--82810077 Score: 472
Period size: 107 Copynumber: 4.5 Consensus size: 106
82809584 TAATAAAGAG
* * * *
82809594 AAATTATCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCCAGTTTATAAAATTACCAAA
1 AAATTATCGAAATACCCT-GATTTGTAAAATTACTAAAATACCCTC-GATTGTAAAATTACCAAA
* * * * *
82809659 ATTCC-CCCAGTTTGTAAAATTACTGAAATA-CCTTGATTTGTA
64 ATACCTTCGA-TTTGTAAAATTACCGAAATACCCTCGATTTGTA
* *
82809701 AAATTATCGAAATACTCCTGATTTGTAAAATTACTAAAATACCCTCGATTGTGAAATTACTAAAA
1 AAATTATCGAAATAC-CCTGATTTGTAAAATTACTAAAATACCCTCGATTGTAAAATTACCAAAA
* *
82809766 TACCTTTGATTTGTAAAATTATCGAAATACCCTCGATTTGTA
65 TACCTTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * ** * * * * *
82809808 AAATTACCAAAATACCCCCAATTTGTGAAACTACTGAAACACCCTCGAATTGTGAAATTACCAAA
1 AAATTATCGAAATA-CCCTGATTTGTAAAATTACTAAAATACCCTCG-ATTGTAAAATTACCAAA
* * * * *
82809873 ACACCTTTGATTTGTAAAATTACCGACACACCCTCAATTTGTA
64 ATACCTTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * * * *
82809916 AAATTA-CCAAATAACCTTCAATTGTGAAATTACTAAAATACCCTCGATTTGTAAAATTATCAAA
1 AAATTATCGAAAT-ACCCTGATTTGTAAAATTACTAAAATACCCTCGA-TTGTAAAATTACCAAA
* * * * *
82809980 ATACCTTCAATTTTTGAAATTACCAAAATACCCTCGATTTGTG
64 ATACCTTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * *
82810023 AAATTATTGAAACACCCTCGATTTGTAAAATTA-TGAAACACCCTCGATTTGTAAA
1 AAATTATCGAAATACCCT-GATTTGTAAAATTACTAAAATACCCTCGA-TTGTAAA
82810078 CCAACATAAC
Statistics
Matches: 312, Mismatches: 56, Indels: 18
0.81 0.15 0.05
Matches are distributed among these distances:
106 37 0.12
107 196 0.63
108 79 0.25
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (106 bp):
AAATTATCGAAATACCCTGATTTGTAAAATTACTAAAATACCCTCGATTGTAAAATTACCAAAAT
ACCTTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
Found at i:82809852 original size:54 final size:54
Alignment explanation
Indices: 82809594--82810077 Score: 426
Period size: 54 Copynumber: 9.0 Consensus size: 54
82809584 TAATAAAGAG
* * * ** * *
82809594 AAATTATCGAAATACCCTCGATTTGTAAAATTACCAAAATACCC-CCAGTTTATA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACTGAAATACCCTCGA-TTTGTA
* * * *
82809648 AAATTACCAAAATTCCCCCAGTTTGTAAAATTACTGAAATA-CCTTGATTTGTA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACTGAAATACCCTCGATTTGTA
* * * * *
82809701 AAATTATCGAAATACTCCT-GATTTGTAAAATTACTAAAATACCCTCGA-TTGTG
1 AAATTACCAAAATAC-CCTCAATTTGTAAAATTACTGAAATACCCTCGATTTGTA
* * **
82809754 AAATTACTAAAATACCTTTGATTTGTAAAATTA-TCGAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACT-GAAATACCCTCGATTTGTA
* * * * * *
82809808 AAATTACCAAAATACCCCCAATTTGTGAAACTACTGAAACACCCTCGAATTGTG
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACTGAAATACCCTCGATTTGTA
* * ** * * * *
82809862 AAATTACCAAAACACCTTTGATTTGTAAAATTACCGACACACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACTGAAATACCCTCGATTTGTA
* * *
82809916 AAATTACC-AAATAACCTTCAA-TTGTGAAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCAAAAT-ACCCTCAATTTGTAAAATTACTGAAATACCCTCGATTTGTA
* * * * ** *
82809969 AAATTATCAAAATACCTTCAATTTTTGAAATTACCAAAATACCCTCGATTTGTG
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACTGAAATACCCTCGATTTGTA
*** * * *
82810023 AAATTATTGAAACACCCTCGATTTGTAAAATTA-TGAAACACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACTGAAATACCCTCGATTTGTA
82810076 AA
1 AA
82810078 CCAACATAAC
Statistics
Matches: 348, Mismatches: 72, Indels: 21
0.79 0.16 0.05
Matches are distributed among these distances:
52 3 0.01
53 142 0.41
54 202 0.58
55 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCTCAATTTGTAAAATTACTGAAATACCCTCGATTTGTA
Found at i:82810645 original size:26 final size:26
Alignment explanation
Indices: 82810589--82810648 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
82810579 TTATTGCGAT
* * *
82810589 ATGGGCTTCGGCCCAATTGAGGCTAAG
1 ATGGGC-TAGGCCCAATTGAGCCTAAC
* *
82810616 ATGGGCTAGGCCCAATTGATCCTATC
1 ATGGGCTAGGCCCAATTGAGCCTAAC
82810642 ATGGGCT
1 ATGGGCT
82810649 GTGACCCAAG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 22 0.79
27 6 0.21
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (26 bp):
ATGGGCTAGGCCCAATTGAGCCTAAC
Found at i:82823331 original size:28 final size:28
Alignment explanation
Indices: 82823291--82823360 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
82823281 ATGAAAATTT
** *
82823291 CACTAAGCATGCGAGTTTGGTTAAT-GAG
1 CACTAAGTGTGCGAGTTTGATT-ATCGAG
82823319 CACTAAGTGTGCGAGTTTGATTATCGAG
1 CACTAAGTGTGCGAGTTTGATTATCGAG
82823347 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
82823361 AGGAAAATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 2 0.05
28 36 0.95
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTGATTATCGAG
Found at i:82841802 original size:13 final size:13
Alignment explanation
Indices: 82841784--82841808 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82841774 TAATGGTATA
82841784 TTGAATCCATGAC
1 TTGAATCCATGAC
82841797 TTGAATCCATGA
1 TTGAATCCATGA
82841809 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:82843630 original size:47 final size:47
Alignment explanation
Indices: 82843458--82843767 Score: 512
Period size: 47 Copynumber: 6.6 Consensus size: 47
82843448 GAAATGATAG
* * *
82843458 TAAGGCCTAATGGCCGATGTGATGACTGTGAAAGTGTATATATGTGAA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTG-A
* *
82843506 TAGGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTG-A
*
82843554 TAGGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
82843601 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
82843648 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
82843695 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGA
1 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
82843742 TAAGGCTTAATGGCCGATGTGATGAA
1 TAAGGCTTAATGGCCGATGTGATGAA
82843768 GTGTATATAT
Statistics
Matches: 254, Mismatches: 8, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
47 164 0.65
48 90 0.35
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.30
Consensus pattern (47 bp):
TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:82844007 original size:37 final size:37
Alignment explanation
Indices: 82843953--82844028 Score: 125
Period size: 37 Copynumber: 2.1 Consensus size: 37
82843943 GAGTTCTAAG
* *
82843953 GACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAA
1 GACCCGATAACTACGTGTGGAGATTTTGTCCGGGTAA
*
82843990 GACCCGATAACTTCGTGTGGAGATTTTGTCCGGGTAA
1 GACCCGATAACTACGTGTGGAGATTTTGTCCGGGTAA
82844027 GA
1 GA
82844029 TTTCGTAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.28
Consensus pattern (37 bp):
GACCCGATAACTACGTGTGGAGATTTTGTCCGGGTAA
Found at i:82861873 original size:40 final size:40
Alignment explanation
Indices: 82861768--82862010 Score: 359
Period size: 40 Copynumber: 6.1 Consensus size: 40
82861758 CGGATGATAA
* *
82861768 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
82861808 CCAGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
82861847 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
82861887 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
*
82861928 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
82861967 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
82862007 CCGG
1 CCGG
82862011 TTGAATTCCG
Statistics
Matches: 186, Mismatches: 12, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
39 36 0.19
40 149 0.80
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:82887640 original size:21 final size:22
Alignment explanation
Indices: 82887590--82887642 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
82887580 AAGGGTTTCG
82887590 CATGCCCGTGTGCCCACCAAACA
1 CATGCCCGTGTGCCCA-CAAACA
*
82887613 CA-G-CCGTGTGTCCA-AAACA
1 CATGCCCGTGTGCCCACAAACA
82887632 CATGCCCGTGT
1 CATGCCCGTGT
82887643 AGGATCCTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 7 0.26
20 1 0.04
21 16 0.59
22 1 0.04
23 2 0.07
ACGTcount: A:0.25, C:0.38, G:0.21, T:0.17
Consensus pattern (22 bp):
CATGCCCGTGTGCCCACAAACA
Found at i:82891011 original size:19 final size:20
Alignment explanation
Indices: 82890970--82891015 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
82890960 TAAGGGTTTC
*
82890970 ACACACCCGTGTGCCCACCAA
1 ACACATCCGTGTGCCCA-CAA
*
82890991 ACACATCCGTGTGTCCA-AA
1 ACACATCCGTGTGCCCACAA
82891010 ACACAT
1 ACACAT
82891016 GCCCATGTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 8 0.35
21 15 0.65
ACGTcount: A:0.33, C:0.39, G:0.13, T:0.15
Consensus pattern (20 bp):
ACACATCCGTGTGCCCACAA
Found at i:82891668 original size:18 final size:18
Alignment explanation
Indices: 82891621--82891665 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
82891611 GTCCAAAACT
82891621 AAAA-AAAATTAAAAATA
1 AAAATAAAATTAAAAATA
*
82891638 AAAGTCAAAATTAAAAATA
1 AAAAT-AAAATTAAAAATA
82891657 AATAATAAA
1 AA-AATAAA
82891666 TTATTATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 3 0.13
19 18 0.78
20 2 0.09
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (18 bp):
AAAATAAAATTAAAAATA
Found at i:82892458 original size:41 final size:42
Alignment explanation
Indices: 82892399--82892479 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 42
82892389 GTGCAGGTTT
* **
82892399 CACACGGCCAAGATACATGCCCATGT-TCTAGGCATGTGTTA
1 CACACGGCCAAGACACATGCCCATGTCTCTACCCATGTGTTA
* *
82892440 CACACGGCTAAGACACATGCCCGTGTCTCTACCCATGTGT
1 CACACGGCCAAGACACATGCCCATGTCTCTACCCATGTGT
82892480 CCAATTTTGG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
41 23 0.68
42 11 0.32
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (42 bp):
CACACGGCCAAGACACATGCCCATGTCTCTACCCATGTGTTA
Found at i:82893222 original size:8 final size:8
Alignment explanation
Indices: 82893209--82893241 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
82893199 TACAACACTT
82893209 TATTAGTG
1 TATTAGTG
82893217 TATTAGTG
1 TATTAGTG
82893225 TATTAGTG
1 TATTAGTG
82893233 TATTAGTG
1 TATTAGTG
82893241 T
1 T
82893242 TTACAGCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (8 bp):
TATTAGTG
Found at i:82901279 original size:17 final size:17
Alignment explanation
Indices: 82901257--82901293 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
82901247 AATCATTATC
82901257 TATTCAT-AACCTAAATA
1 TATTCATCAACC-AAATA
82901274 TATTCATCAACCAAATA
1 TATTCATCAACCAAATA
82901291 TAT
1 TAT
82901294 CTAATTTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (17 bp):
TATTCATCAACCAAATA
Found at i:82905147 original size:24 final size:25
Alignment explanation
Indices: 82905120--82905186 Score: 82
Period size: 24 Copynumber: 2.7 Consensus size: 25
82905110 CTAGAATCAG
* * *
82905120 AATCAGAATCAGAATTAGGT-GACA
1 AATCAGAATCAGAATCAGGTAAAAA
*
82905144 AATCAGAATCAGTATCAGGTAAAAA
1 AATCAGAATCAGAATCAGGTAAAAA
*
82905169 AATCAAAATCAGAATCAG
1 AATCAGAATCAGAATCAG
82905187 TATCAGGTGA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
24 18 0.50
25 18 0.50
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.19
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAAAAA
Found at i:82905394 original size:27 final size:26
Alignment explanation
Indices: 82905352--82905453 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 26
82905342 GCTCAGTTAT
* *
82905352 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
82905379 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
82905405 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
*
82905433 CAGATAATGTGGC-GAAGCCAC
1 CAGATATTGTGGCAG-AGCCAC
82905454 TTAACAGAAT
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
26 7 0.10
27 52 0.78
28 8 0.12
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:82905646 original size:22 final size:22
Alignment explanation
Indices: 82905612--82905676 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
82905602 GCAAATACGT
*
82905612 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
82905634 TTGGGACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
82905656 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
82905677 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:82906160 original size:27 final size:27
Alignment explanation
Indices: 82906103--82906322 Score: 286
Period size: 27 Copynumber: 8.3 Consensus size: 27
82906093 GGGGAAAAAT
* * * *
82906103 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
82906129 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82906156 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
82906183 GGTAATTCTACCCTACAGGGGTATTGT-
1 GGTAATTCTACCCTACAGGGGTATT-TC
*
82906210 GATAATTCTA--CTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82906235 GGTAATTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82906262 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
82906289 GATAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82906316 TGTAATT
1 GGTAATT
82906323 TTGTAAATCG
Statistics
Matches: 169, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
24 1 0.01
25 22 0.13
26 14 0.08
27 131 0.78
28 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:82906240 original size:79 final size:80
Alignment explanation
Indices: 82906103--82906322 Score: 293
Period size: 79 Copynumber: 2.8 Consensus size: 80
82906093 GGGGAAAAAT
* * * * * *
82906103 GGTAATTTTACCCCACAA-GGTATCTCGGTAATTCCACCCTACAGGGGTATTTTAGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTA-CCTACAGGGGTATTTCAGTAATTCTAC
*
82906167 CCTACAGGGGTATTTC
65 CCTACAGAGGTATTTC
* *
82906183 GGTAATTCTACCCTACAGGGGTATTGT-GATAATTCTA-CTACAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATT-TCGATAATTCTACCTACAGGGGTATTTCAGTAATTCTAC
82906246 CCTACAGAGGTATTTC
65 CCTACAGAGGTATTTC
* *
82906262 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTCCTGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTA-CCTACAGGGGTATTTCAGTAATT
82906323 TTGTAAATCG
Statistics
Matches: 123, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
78 1 0.01
79 73 0.59
80 15 0.12
81 33 0.27
82 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (80 bp):
GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCTACAGGGGTATTTCAGTAATTCTACC
CTACAGAGGTATTTC
Found at i:82906306 original size:106 final size:106
Alignment explanation
Indices: 82906121--82906313 Score: 323
Period size: 106 Copynumber: 1.8 Consensus size: 106
82906111 TACCCCACAA
* * * *
82906121 GGTATCTCGGTAATTCCACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGT
1 GGTATCTCGGTAATTCCACCCTACAGAGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAT
82906186 AATTCTACCCTACAGGGGTATTGTGATAATTCTACTACAGG
66 AATTCTACCCTACAGGGGTATTGTGATAATTCTACTACAGG
* * *
82906227 GGTATTTCGGTAATTCTACCCTACAGAGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGAT
1 GGTATCTCGGTAATTCCACCCTACAGAGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAT
82906292 AATTCTACCCTACAGGGGTATT
66 AATTCTACCCTACAGGGGTATT
82906314 CCTGTAATTT
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
106 80 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (106 bp):
GGTATCTCGGTAATTCCACCCTACAGAGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAT
AATTCTACCCTACAGGGGTATTGTGATAATTCTACTACAGG
Found at i:82906401 original size:27 final size:27
Alignment explanation
Indices: 82906361--82906804 Score: 179
Period size: 27 Copynumber: 16.6 Consensus size: 27
82906351 TGTAGATCAA
* *
82906361 GGTACTTTGGTAATTTTACAAGTCGAG
1 GGTATTTTAGTAATTTTACAAGTCGAG
* * *
82906388 GGTATTTCAATAATTTTACAGGTCGAG
1 GGTATTTTAGTAATTTTACAAGTCGAG
* * *
82906415 GGTATTTTAGTAATTTCACAAAT-TAG
1 GGTATTTTAGTAATTTTACAAGTCGAG
* * *
82906441 GGTATTTTGGTAATTTTACAA-ACTAGG
1 GGTATTTTAGTAATTTTACAAGTCGA-G
**
82906468 GGTATTTT-GATAA-TTTACAAACCTG-G
1 GGTATTTTAG-TAATTTTACAAGTC-GAG
* * *
82906494 GGTATTTTGGTAATTTTACAA-ACTAAG
1 GGTATTTTAGTAATTTTACAAGTC-GAG
* *
82906521 GGTA-TTT-GTTAATTTATA-AA-CCAAG
1 GGTATTTTAG-TAATTT-TACAAGTCGAG
* *
82906546 GGTATTTTAGTAATTTTACAA-ACCAGG
1 GGTATTTTAGTAATTTTACAAGTCGA-G
* * *
82906573 GGTATTTTGGTAATTTTGTA-AACT-AAG
1 GGTATTTTAGTAA-TTT-TACAAGTCGAG
* * * *
82906600 GGTGTTTTGGTAATTTTACAAAT-TATG
1 GGTATTTTAGTAATTTTACAAGTCGA-G
* * * ** *
82906627 GGTATTTTGGTGATTTTATAAACCAAG
1 GGTATTTTAGTAATTTTACAAGTCGAG
* *
82906654 GGTATTTTAGTAATTTTACAA-ACTAGG
1 GGTATTTTAGTAATTTTACAAGTCGA-G
* *
82906681 GGTATTTTGGTAATTTTGTA-AACT-GAG
1 GGTATTTTAGTAA-TTT-TACAAGTCGAG
* * *
82906708 GGTATTTTGGTAATTTTACAA-ACCAGG
1 GGTATTTTAGTAATTTTACAAGTCGA-G
* * * ** *
82906735 GGTATTTTGGTGATTTTATAAACCAAG
1 GGTATTTTAGTAATTTTACAAGTCGAG
* *
82906762 GGTATTTTAGTAATTTTACAA-ACCAGG
1 GGTATTTTAGTAATTTTACAAGTCGA-G
*
82906789 GGTATTTTGGTAATTT
1 GGTATTTTAGTAATTT
82906805 GGTAAACTAA
Statistics
Matches: 336, Mismatches: 52, Indels: 58
0.75 0.12 0.13
Matches are distributed among these distances:
25 14 0.04
26 87 0.26
27 216 0.64
28 15 0.04
29 4 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTACAAGTCGAG
Found at i:82906619 original size:54 final size:54
Alignment explanation
Indices: 82906414--82906814 Score: 506
Period size: 54 Copynumber: 7.5 Consensus size: 54
82906404 TACAGGTCGA
* * * *
82906414 GGGTATTTTAGTAATTTCACAAA-TTAGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTGGTAATTTTACAAACTAG
* * * *
82906467 GGGTATTTTGATAA-TTTACAAACCT-GGGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTATAAA-CTAAGGGTATTTTGGTAATTTTACAAACTAG
* * * *
82906520 GGGTA-TTTGTTAA-TTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTGGTAATTTTACAAACTAG
* * * *
82906572 GGGTATTTTGGTAATTTTGTAAACTAAGGGTGTTTTGGTAATTTTACAAATTAT
1 GGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTGGTAATTTTACAAACTAG
* * *
82906626 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTGGTAATTTTACAAACTAG
* * *
82906680 GGGTATTTTGGTAATTTTGTAAACTGAGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTGGTAATTTTACAAACTAG
* * * *
82906734 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTGGTAATTTTACAAACTAG
**
82906788 GGGTATTTTGGTAATTTGGTAAACTAA
1 GGGTATTTTGGTAATTTTATAAACTAA
82906815 AGTATTCTAA
Statistics
Matches: 301, Mismatches: 42, Indels: 9
0.86 0.12 0.03
Matches are distributed among these distances:
51 1 0.00
52 50 0.17
53 50 0.17
54 200 0.66
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTGGTAATTTTACAAACTAG
Found at i:82906672 original size:108 final size:108
Alignment explanation
Indices: 82906439--82906814 Score: 571
Period size: 108 Copynumber: 3.5 Consensus size: 108
82906429 TTCACAAATT
* * * ** *
82906439 AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAA-TTTACAAACCT-GGGGTATTTT
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAA-CTAAGGGTATTTT
* *
82906502 GGTAATTTTACAAACTAAGGGTA-TTT-GTTAATTTATAAACCA
65 GGTAATTTTACAAACTAAGGGTATTTTGGTGATTTTATAAACCA
*
82906544 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTGTTTTG
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTG
* *
82906609 GTAATTTTACAAATTATGGGTATTTTGGTGATTTTATAAACCA
66 GTAATTTTACAAACTAAGGGTATTTTGGTGATTTTATAAACCA
* *
82906652 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACTGAGGGTATTTTG
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTG
* *
82906717 GTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
66 GTAATTTTACAAACTAAGGGTATTTTGGTGATTTTATAAACCA
*
82906760 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGGTAAACTAA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAA
82906815 AGTATTCTAA
Statistics
Matches: 247, Mismatches: 20, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
105 41 0.17
106 35 0.14
107 3 0.01
108 168 0.68
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (108 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTG
GTAATTTTACAAACTAAGGGTATTTTGGTGATTTTATAAACCA
Found at i:82906811 original size:27 final size:27
Alignment explanation
Indices: 82906414--82906804 Score: 441
Period size: 27 Copynumber: 14.6 Consensus size: 27
82906404 TACAGGTCGA
* * **
82906414 GGGTATTTTAGTAATTTCACAAATTA-
1 GGGTATTTTGGTAATTTTACAAACCAG
*
82906440 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
82906467 GGGTATTTTGATAA-TTTACAAACCTG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
82906493 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
82906520 GGGTA-TTTGTTAA-TTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
82906545 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
82906572 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* ** *
82906599 GGGTGTTTTGGTAATTTTACAAATTAT
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
82906626 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
82906653 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
82906680 GGGTATTTTGGTAATTTTGTAAA-CTG
1 GGGTATTTTGGTAATTTTACAAACCAG
82906706 AGGGTATTTTGGTAATTTTACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
* * *
82906734 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
82906761 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
82906788 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
82906805 GGTAAACTAA
Statistics
Matches: 305, Mismatches: 54, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
25 15 0.05
26 60 0.20
27 228 0.75
28 2 0.01
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:82908723 original size:24 final size:25
Alignment explanation
Indices: 82908696--82908762 Score: 84
Period size: 24 Copynumber: 2.7 Consensus size: 25
82908686 CTAGAATCAG
*
82908696 AATCAGAATCAGAATTAGGTGAC-A
1 AATCAGAATCAGAATTAGGTAACAA
*
82908720 AATCAGAATCA-ATATCAGGTAACAA
1 AATCAGAATCAGA-ATTAGGTAACAA
*
82908745 AATCAAAATCAGAATTAG
1 AATCAGAATCAGAATTAG
82908763 TATCAGGTGA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
23 1 0.03
24 19 0.53
25 15 0.42
26 1 0.03
ACGTcount: A:0.51, C:0.13, G:0.15, T:0.21
Consensus pattern (25 bp):
AATCAGAATCAGAATTAGGTAACAA
Found at i:82908757 original size:31 final size:32
Alignment explanation
Indices: 82908719--82908791 Score: 103
Period size: 31 Copynumber: 2.3 Consensus size: 32
82908709 ATTAGGTGAC
82908719 AAATCAGAATCAATATCAGGTAACAAAATC-A
1 AAATCAGAATCAATATCAGGTAACAAAATCAA
* * * *
82908750 AAATCAGAATTAGTATCAGGTGACAGAATCAA
1 AAATCAGAATCAATATCAGGTAACAAAATCAA
82908782 AAATCAGAAT
1 AAATCAGAAT
82908792 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
31 26 0.70
32 11 0.30
ACGTcount: A:0.52, C:0.14, G:0.14, T:0.21
Consensus pattern (32 bp):
AAATCAGAATCAATATCAGGTAACAAAATCAA
Found at i:82908991 original size:27 final size:26
Alignment explanation
Indices: 82908928--82909022 Score: 93
Period size: 27 Copynumber: 3.5 Consensus size: 26
82908918 GCTCAGTTAT
* *
82908928 CAGATATTGTGACAGAG-TCATCAGACA
1 CAGATATTGTGGCAGAGCT-ACCAGA-A
82908955 CAGATATTGTGGCAGAGCTACCAGAA
1 CAGATATTGTGGCAGAGCTACCAGAA
* * *
82908981 CAGATATTTGTGGCATAGCCACCAAAAA
1 CAGATA-TTGTGGCAGAGCTACC-AGAA
*
82909009 CAGATAATGTGGCA
1 CAGATATTGTGGCA
82909023 AAGCCACTTA
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
26 7 0.12
27 42 0.71
28 10 0.17
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCTACCAGAA
Found at i:82909222 original size:22 final size:22
Alignment explanation
Indices: 82909188--82909252 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
82909178 GCAAATACGT
*
82909188 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
82909210 TTGGGACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
82909232 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
82909253 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:82909728 original size:27 final size:26
Alignment explanation
Indices: 82909697--82909844 Score: 138
Period size: 27 Copynumber: 5.5 Consensus size: 26
82909687 TACCCCACAA
* *
82909697 GGTATCTCGATAATTCCACCTTACAGG
1 GGTAT-TCGATAATTCTACCCTACAGG
**
82909724 GGTATTTTAGTAATTCTACCCTACAGG
1 GGTATTCGA-TAATTCTACCCTACAGG
*
82909751 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTA-TTCGATAATTCTACCCTACAGG
*
82909778 GGTATTGTGATAATTCTA--CTACAGG
1 GGTATT-CGATAATTCTACCCTACAGG
* * *
82909803 GGTATTTCGGTAATTCTACCCTATAGA
1 GGTA-TTCGATAATTCTACCCTACAGG
*
82909830 GGTATTTCGGTAATT
1 GGTA-TTCGATAATT
82909845 TTGTAAATCG
Statistics
Matches: 102, Mismatches: 13, Indels: 12
0.80 0.10 0.09
Matches are distributed among these distances:
25 20 0.20
26 6 0.06
27 74 0.73
28 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (26 bp):
GGTATTCGATAATTCTACCCTACAGG
Found at i:82909820 original size:52 final size:53
Alignment explanation
Indices: 82909697--82909844 Score: 185
Period size: 52 Copynumber: 2.8 Consensus size: 53
82909687 TACCCCACAA
* * * * *
82909697 GGTATCTCGATAATTCCACCTTACAGGGGTATTTTAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTGAGTAATTCTA-CCTACAGG
82909751 GGTATTTCGGTAATTCTACCCTACAGGGGTATTGTGA-TAATTCTA-CTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATT-TGAGTAATTCTACCTACAGG
* *
82909803 GGTATTTCGGTAATTCTACCCTATAGAGGTATTTCG-GTAATT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTT-GAGTAATT
82909845 TTGTAAATCG
Statistics
Matches: 84, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
51 1 0.01
52 44 0.52
54 37 0.44
55 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (53 bp):
GGTATTTCGGTAATTCTACCCTACAGGGGTATTTGAGTAATTCTACCTACAGG
Found at i:82909912 original size:27 final size:27
Alignment explanation
Indices: 82909878--82910331 Score: 432
Period size: 27 Copynumber: 16.8 Consensus size: 27
82909868 AATTCTGTAG
*
82909878 ATCAAGGGTACTTTGGTAATTTTACAA
1 ATCAAGGGTATTTTGGTAATTTTACAA
* * *** *
82909905 GTCGAGGGTATTTCAATAATTTTACAG
1 ATCAAGGGTATTTTGGTAATTTTACAA
* * ** *
82909932 GTCGAGGGTATTTCAGTAATTTCACAA
1 ATCAAGGGTATTTTGGTAATTTTACAA
* * *
82909959 ATTAGGGGTATTTTGGTTATTTTACAA
1 ATCAAGGGTATTTTGGTAATTTTACAA
* *
82909986 A-CTAGGGGTATTTTGATAATTTTACAA
1 ATC-AAGGGTATTTTGGTAATTTTACAA
*
82910013 A-CTAGGGGTATTTTGGTAATTTTACAA
1 ATC-AAGGGTATTTTGGTAATTTTACAA
* * *
82910040 ATTAGGGGTATTTTGGTAATTTTATAA
1 ATCAAGGGTATTTTGGTAATTTTACAA
* *
82910067 ACCAAGGGTATTTTAGTAATTTTACAA
1 ATCAAGGGTATTTTGGTAATTTTACAA
**
82910094 A-CTAAGGGTATTTTGGTAATTTTGTAA
1 ATC-AAGGGTATTTTGGTAATTTTACAA
82910121 A-CTAAGGGTATTTTGGTAATTTTACAA
1 ATC-AAGGGTATTTTGGTAATTTTACAA
* * * *
82910148 ATTAGGGGTATTTTGGTGATTTTATAA
1 ATCAAGGGTATTTTGGTAATTTTACAA
* * *
82910175 ACCAAGGGTATTTTAGTAATTTTATAA
1 ATCAAGGGTATTTTGGTAATTTTACAA
* **
82910202 ACCAAGGGTATTTTGGTAATTTTGTAA
1 ATCAAGGGTATTTTGGTAATTTTACAA
* *
82910229 ACCAAAGGTATTTTGGTAATTTTACAA
1 ATCAAGGGTATTTTGGTAATTTTACAA
* * *
82910256 A-CTAGAGGTATTTTGGTGATTTTATAA
1 ATCAAG-GGTATTTTGGTAATTTTACAA
* *
82910283 ACCAAGGGTATTTTAGTAATTTTACAA
1 ATCAAGGGTATTTTGGTAATTTTACAA
* *
82910310 ACCAGGGGTATTTTGGTAATTT
1 ATCAAGGGTATTTTGGTAATTT
82910332 GGTAAACTAA
Statistics
Matches: 363, Mismatches: 58, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
26 3 0.01
27 357 0.98
28 3 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41
Consensus pattern (27 bp):
ATCAAGGGTATTTTGGTAATTTTACAA
Done.