Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 244 of 373
Found at i:82910123 original size:108 final size:108
Alignment explanation
Indices: 82909964--82910341 Score: 603
Period size: 108 Copynumber: 3.5 Consensus size: 108
82909954 CACAAATTAG
* * * * * ** *
82909964 GGGTATTTTGGTTATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGG
*
82910029 TAATTTTACAAATTAGGGGTATTTTGGTAATTTTATAAACCAA
66 TAATTTTACAAATTAGGGGTATTTTGGTGATTTTATAAACCAA
*
82910072 GGGTATTTTAGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGG
82910137 TAATTTTACAAATTAGGGGTATTTTGGTGATTTTATAAACCAA
66 TAATTTTACAAATTAGGGGTATTTTGGTGATTTTATAAACCAA
* * *
82910180 GGGTATTTTAGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTGTAAACCAAAGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGG
* *
82910245 TAATTTTACAAACTAGAGGTATTTTGGTGATTTTATAAACCAA
66 TAATTTTACAAATTAGGGGTATTTTGGTGATTTTATAAACCAA
* *
82910288 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGGTAAACTAA
1 GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAACTAA
82910342 AGTATTCTAA
Statistics
Matches: 252, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
108 252 1.00
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.42
Consensus pattern (108 bp):
GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGG
TAATTTTACAAATTAGGGGTATTTTGGTGATTTTATAAACCAA
Found at i:82910338 original size:27 final size:27
Alignment explanation
Indices: 82909936--82910331 Score: 470
Period size: 27 Copynumber: 14.7 Consensus size: 27
82909926 TTACAGGTCG
** * *
82909936 AGGGTATTTCAGTAATTTCACAAATTA
1 AGGGTATTTTGGTAATTTTACAAACTA
* *
82909963 GGGGTATTTTGGTTATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACTA
* *
82909990 GGGGTATTTTGATAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACTA
* *
82910017 GGGGTATTTTGGTAATTTTACAAATTA
1 AGGGTATTTTGGTAATTTTACAAACTA
* * *
82910044 GGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACTA
*
82910071 AGGGTATTTTAGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACTA
**
82910098 AGGGTATTTTGGTAATTTTGTAAACTA
1 AGGGTATTTTGGTAATTTTACAAACTA
*
82910125 AGGGTATTTTGGTAATTTTACAAATTA
1 AGGGTATTTTGGTAATTTTACAAACTA
* * * *
82910152 GGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACTA
* * *
82910179 AGGGTATTTTAGTAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACTA
** *
82910206 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACTA
*
82910233 AAGGTATTTTGGTAATTTTACAAACT-
1 AGGGTATTTTGGTAATTTTACAAACTA
* * *
82910259 AGAGGTATTTTGGTGATTTTATAAACCA
1 AG-GGTATTTTGGTAATTTTACAAACTA
* *
82910287 AGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACTA
*
82910314 GGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
82910332 GGTAAACTAA
Statistics
Matches: 321, Mismatches: 46, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 318 0.99
28 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAACTA
Found at i:82910338 original size:54 final size:54
Alignment explanation
Indices: 82909964--82910331 Score: 538
Period size: 54 Copynumber: 6.8 Consensus size: 54
82909954 CACAAATTAG
* * * * *
82909964 GGGTATTTTGGTTATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
*
82910018 GGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
* * * *
82910072 GGGTATTTTAGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
* *
82910126 GGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
* * * * *
82910180 GGGTATTTTAGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
* * *
82910234 AGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
* *
82910288 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTT
82910332 GGTAAACTAA
Statistics
Matches: 277, Mismatches: 37, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 277 1.00
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:82912413 original size:43 final size:44
Alignment explanation
Indices: 82912304--82912414 Score: 122
Period size: 43 Copynumber: 2.5 Consensus size: 44
82912294 TTTTTGTGTG
* *
82912304 AGACCACGTCTGGGACGTTGGCATCGACTTATGATTTACGTGTA
1 AGACCACGTCTGAGACGTTGGCATCGACTTATGATTTACATGTA
* * *
82912348 AGACC-CTGTCTAAGACAG-TGGCATCTA-TATTTGA-TTACATGTA
1 AGACCAC-GTCTGAGAC-GTTGGCATCGACT-TATGATTTACATGTA
82912391 AGACCACGTCTGAGACGTTGGCAT
1 AGACCACGTCTGAGACGTTGGCAT
82912415 TGTACGAGCT
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
42 1 0.02
43 29 0.52
44 25 0.45
45 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (44 bp):
AGACCACGTCTGAGACGTTGGCATCGACTTATGATTTACATGTA
Found at i:82919090 original size:43 final size:43
Alignment explanation
Indices: 82919006--82919091 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 43
82918996 TTTGTGATTC
* *
82919006 CGATATGTGCTTACGAGTAAGACCCTGTCTGGGATTGTGGCAT
1 CGATATGTGCTTACGAGTAAGACCATGTCTGGGAGTGTGGCAT
82919049 CGATATGTGGC-TAC-ATGTAAGACCATGTCTGGGACGT-TGGCAT
1 CGATATGT-GCTTACGA-GTAAGACCATGTCTGGGA-GTGTGGCAT
82919092 TGTACTATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 1 0.03
43 34 0.89
44 3 0.08
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (43 bp):
CGATATGTGCTTACGAGTAAGACCATGTCTGGGAGTGTGGCAT
Found at i:82924820 original size:23 final size:23
Alignment explanation
Indices: 82924786--82924896 Score: 95
Period size: 22 Copynumber: 4.9 Consensus size: 23
82924776 TAAGCTAATG
*
82924786 AACAGTAAGCTCTAATGAGCTGT
1 AACAGTAAGCTCTAATGAGCTGA
*
82924809 AACGGTAAGCTCT-ATCGAGCT-A
1 AACAGTAAGCTCTAAT-GAGCTGA
* *
82924831 AACAGTAAGCTTTATTGAGCTG-
1 AACAGTAAGCTCTAATGAGCTGA
* *
82924853 AGCAGTAAGCTC-ATATGAGCTAA
1 AACAGTAAGCTCTA-ATGAGCTGA
** *
82924876 AATGGTAAGCTCCAATGAGCT
1 AACAGTAAGCTCTAATGAGCT
82924897 AAAAATAGTA
Statistics
Matches: 70, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
21 1 0.01
22 34 0.49
23 34 0.49
24 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (23 bp):
AACAGTAAGCTCTAATGAGCTGA
Found at i:82924840 original size:45 final size:44
Alignment explanation
Indices: 82924786--82924896 Score: 127
Period size: 45 Copynumber: 2.5 Consensus size: 44
82924776 TAAGCTAATG
*
82924786 AACAGTAAGCTCTAATGAGCTGTAACGGTAAGCTC-TATCGAGCTA
1 AACAGTAAGCTCTAATGAGCTG-AACAGTAAGCTCATAT-GAGCTA
* * *
82924831 AACAGTAAGCTTTATTGAGCTGAGCAGTAAGCTCATATGAGCTA
1 AACAGTAAGCTCTAATGAGCTGAACAGTAAGCTCATATGAGCTA
*
82924875 AA-ATGGTAAGCTCCAATGAGCT
1 AACA--GTAAGCTCTAATGAGCT
82924897 AAAAATAGTA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
43 1 0.02
44 18 0.32
45 37 0.66
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (44 bp):
AACAGTAAGCTCTAATGAGCTGAACAGTAAGCTCATATGAGCTA
Found at i:82924841 original size:22 final size:21
Alignment explanation
Indices: 82924786--82924899 Score: 95
Period size: 23 Copynumber: 5.1 Consensus size: 21
82924776 TAAGCTAATG
*
82924786 AACAGTAAGCTCTAATGAGCTGT
1 AACAGTAAGCTCT-ATGAGCT-A
*
82924809 AACGGTAAGCTCTATCGAGCTA
1 AACAGTAAGCTCTAT-GAGCTA
* *
82924831 AACAGTAAGCTTTATTGAGCTG
1 AACAGTAAGCTCTA-TGAGCTA
*
82924853 AGCAGTAAGCTCATATGAGCTA
1 AACAGTAAGCTC-TATGAGCTA
*
82924875 AA-ATGGTAAGCTCCAATGAGCTA
1 AACA--GTAAGCT-CTATGAGCTA
82924898 AA
1 AA
82924900 AATAGTAACC
Statistics
Matches: 75, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
21 1 0.01
22 36 0.48
23 37 0.49
24 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.25
Consensus pattern (21 bp):
AACAGTAAGCTCTATGAGCTA
Found at i:82924897 original size:23 final size:23
Alignment explanation
Indices: 82924857--82924946 Score: 74
Period size: 24 Copynumber: 3.7 Consensus size: 23
82924847 GAGCTGAGCA
82924857 GTAAGCTCATATGAGCTAAAATG
1 GTAAGCTCATATGAGCTAAAATG
*
82924880 GTAAGCTCCA-ATGAGCTAAAAATA
1 GTAAGCT-CATATGAGCT-AAAATG
* * * *
82924904 GTAACCTCTTACGAGCTGATATATTG
1 GTAAGCTCATATGAGCT-A-A-AATG
*
82924930 GTAAGCTCATACGAGCT
1 GTAAGCTCATATGAGCT
82924947 GTGGTGAGTC
Statistics
Matches: 53, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
23 15 0.28
24 20 0.38
25 1 0.02
26 17 0.32
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (23 bp):
GTAAGCTCATATGAGCTAAAATG
Found at i:82924907 original size:24 final size:23
Alignment explanation
Indices: 82924856--82924907 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 23
82924846 TGAGCTGAGC
82924856 AGTAAGCTCATATGAGCTAAAAT
1 AGTAAGCTCATATGAGCTAAAAT
*
82924879 GGTAAGCTCCA-ATGAGCTAAAAAT
1 AGTAAGCT-CATATGAGCT-AAAAT
82924903 AGTAA
1 AGTAA
82924908 CCTCTTACGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 14 0.56
24 11 0.44
ACGTcount: A:0.44, C:0.13, G:0.19, T:0.23
Consensus pattern (23 bp):
AGTAAGCTCATATGAGCTAAAAT
Found at i:82927257 original size:75 final size:74
Alignment explanation
Indices: 82927116--82927456 Score: 434
Period size: 75 Copynumber: 4.6 Consensus size: 74
82927106 ATATTTGATG
* * *
82927116 TATATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTATTATATCAAGGTTTATCTCGCAGGCTTA
1 TATATCCGGGTT-TATCCCGCAGGCTTAGTGCTGGTATTATATCCAGGTTTATCTCGCAGGCTTA
82927181 GTGCTGGTAT
65 GTGCTGGTAT
* * * * * *
82927191 TATATCCGAGTTTATCCCACAGGCTTCGTGCTGGGATTATATCCGGGTTTTATCTCACAGGCTTA
1 TATATCCGGGTTTATCCCGCAGGCTTAGTGCTGGTATTATATCCAGG-TTTATCTCGCAGGCTTA
82927256 GTGCTGGTAT
65 GTGCTGGTAT
* * * *
82927266 TATATTCGGGTTTATCCCGCAAGCTTAGTGCTGGTATTATATCCGGGTTTATC-CTGCA-GCTTT
1 TATATCCGGGTTTATCCCGCAGGCTTAGTGCTGGTATTATATCCAGGTTTATCTC-GCAGGCTTA
82927329 GTGCTGGTAT
65 GTGCTGGTAT
* * * * * *
82927339 TATATCCGGGTTTATCCTGAAGGCTTCGTGCTGGTATTATATCCAGGTTTTATCCCGCAAGCTTC
1 TATATCCGGGTTTATCCCGCAGGCTTAGTGCTGGTATTATATCCAGG-TTTATCTCGCAGGCTTA
82927404 GTGCTGGTAT
65 GTGCTGGTAT
* *
82927414 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTACTATAT
1 TATATCCGGGTT-TATCCCGCAGGCTTAGTGCTGGTATTATAT
82927457 TCAAGCTTAA
Statistics
Matches: 232, Mismatches: 28, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
73 56 0.24
74 46 0.20
75 105 0.45
76 25 0.11
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (74 bp):
TATATCCGGGTTTATCCCGCAGGCTTAGTGCTGGTATTATATCCAGGTTTATCTCGCAGGCTTAG
TGCTGGTAT
Found at i:82927449 original size:38 final size:37
Alignment explanation
Indices: 82927116--82927456 Score: 432
Period size: 37 Copynumber: 9.1 Consensus size: 37
82927106 ATATTTGATG
* *
82927116 TATATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAT
1 TATATCCGGGTT-TATCCCGCAGGCTTAGTGCTGGTAT
** *
82927154 TATATCAAGGTTTATCTCGCAGGCTTAGTGCTGGTAT
1 TATATCCGGGTTTATCCCGCAGGCTTAGTGCTGGTAT
* * * *
82927191 TATATCCGAGTTTATCCCACAGGCTTCGTGCTGGGAT
1 TATATCCGGGTTTATCCCGCAGGCTTAGTGCTGGTAT
* *
82927228 TATATCCGGGTTTTATCTCACAGGCTTAGTGCTGGTAT
1 TATATCCGGG-TTTATCCCGCAGGCTTAGTGCTGGTAT
* *
82927266 TATATTCGGGTTTATCCCGCAAGCTTAGTGCTGGTAT
1 TATATCCGGGTTTATCCCGCAGGCTTAGTGCTGGTAT
* *
82927303 TATATCCGGGTTTATCCTGCA-GCTTTGTGCTGGTAT
1 TATATCCGGGTTTATCCCGCAGGCTTAGTGCTGGTAT
* * *
82927339 TATATCCGGGTTTATCCTGAAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTTATCCCGCAGGCTTAGTGCTGGTAT
* * *
82927376 TATATCCAGGTTTTATCCCGCAAGCTTCGTGCTGGTAT
1 TATATCC-GGGTTTATCCCGCAGGCTTAGTGCTGGTAT
* *
82927414 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAC
1 TATATCCGGGTT-TATCCCGCAGGCTTAGTGCTGGTAT
82927452 TATAT
1 TATAT
82927457 TCAAGCTTAA
Statistics
Matches: 265, Mismatches: 34, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
36 34 0.13
37 129 0.49
38 102 0.38
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (37 bp):
TATATCCGGGTTTATCCCGCAGGCTTAGTGCTGGTAT
Found at i:82934196 original size:42 final size:42
Alignment explanation
Indices: 82934116--82934197 Score: 96
Period size: 42 Copynumber: 2.0 Consensus size: 42
82934106 GGTGCAGGGG
** **
82934116 ACACACGGTCTAACACATGCCCATGTTACTAGGTCGTGTGTC
1 ACACACGGTCTAACACACACCCATGTTACTAGCCCGTGTGTC
82934158 ACACACGGTCTAGACACACACCCATGTGT-CT-GCCCGTGTG
1 ACACACGGTCTA-ACACACACCCATGT-TACTAGCCCGTGTG
82934198 GACAAAATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
42 19 0.56
43 14 0.41
44 1 0.03
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (42 bp):
ACACACGGTCTAACACACACCCATGTTACTAGCCCGTGTGTC
Found at i:82935204 original size:58 final size:57
Alignment explanation
Indices: 82935057--82935204 Score: 147
Period size: 57 Copynumber: 2.6 Consensus size: 57
82935047 CGTATAACAA
* * * *
82935057 GATTACCAGTCTAGGCTAAATCCTTTATATAACGTAAGCTCAGAGAAGCTCGATTAG
1 GATTACCAGTCCAGGCTAAATCCTTTCTATAACCTAAGCTCAGAGAAGCTAGATTAG
* * * * * *
82935114 GATTACTAGTCCAGGCTAAACCCTAATC-ATAACCTATGCTC-GAGAAGTATTATATTAG
1 GATTACCAGTCCAGGCTAAATCCT-TTCTATAACCTAAGCTCAGAGAAG--CTAGATTAG
* *
82935172 GATTACCCGTCCAGGCTATATCCTTTCTATAAC
1 GATTACCAGTCCAGGCTAAATCCTTTCTATAAC
82935205 AAGGTCAATA
Statistics
Matches: 72, Mismatches: 15, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
56 6 0.08
57 34 0.47
58 32 0.44
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (57 bp):
GATTACCAGTCCAGGCTAAATCCTTTCTATAACCTAAGCTCAGAGAAGCTAGATTAG
Found at i:82937901 original size:27 final size:27
Alignment explanation
Indices: 82937871--82938043 Score: 204
Period size: 27 Copynumber: 6.4 Consensus size: 27
82937861 GGGGCAAAAT
* * *
82937871 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
82937898 GGTAATTCTACCCTAC-AGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
** * *
82937925 AATATTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
82937952 GATAATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
82937979 CGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
82938006 AATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
82938033 GGTAATTCTAC
1 GGTAATTCTAC
82938044 AACTTATCCA
Statistics
Matches: 124, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
26 2 0.02
27 120 0.97
28 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:82938008 original size:81 final size:81
Alignment explanation
Indices: 82937885--82938042 Score: 255
Period size: 81 Copynumber: 2.0 Consensus size: 81
82937875 ATTTTACCCC
* *
82937885 ACAAGGGTATCTCGGTAATTCTACCCTACAGAGGTATTTCAATATTTCTACCTTACAAGGGTATT
1 ACAAGGGTATCTCCGTAATTCTACCCTACAGAGGTATTTCAATAATTCTACCTTACAAGGGTATT
82937950 TCGATAATTCTATCCT
66 TCGATAATTCTATCCT
* *
82937966 ACAAGGGTATTTCCGTAATTCTACCCTACA-AGGGTATTTCAATAATTCTACCTTACAGGGGTAT
1 ACAAGGGTATCTCCGTAATTCTACCCTACAGA-GGTATTTCAATAATTCTACCTTACAAGGGTAT
*
82938030 TTCGGTAATTCTA
65 TTCGATAATTCTA
82938043 CAACTTATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
80 1 0.01
81 70 0.99
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.35
Consensus pattern (81 bp):
ACAAGGGTATCTCCGTAATTCTACCCTACAGAGGTATTTCAATAATTCTACCTTACAAGGGTATT
TCGATAATTCTATCCT
Found at i:82951328 original size:6 final size:6
Alignment explanation
Indices: 82951317--82951343 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
82951307 ATTACGTTTC
82951317 TCCATG TCCATG TCCATG TCCATG TCC
1 TCCATG TCCATG TCCATG TCCATG TCC
82951344 GTATCCTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.37, G:0.15, T:0.33
Consensus pattern (6 bp):
TCCATG
Found at i:82952301 original size:19 final size:20
Alignment explanation
Indices: 82952258--82952302 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
82952248 TGTAAGTGGG
82952258 TTATTTTCATATACATTTAT
1 TTATTTTCATATACATTTAT
*
82952278 TTATTTTTATAT-CAATTT-T
1 TTATTTTCATATAC-ATTTAT
82952297 TTATTT
1 TTATTT
82952303 GTATTTCTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (20 bp):
TTATTTTCATATACATTTAT
Found at i:82954174 original size:13 final size:13
Alignment explanation
Indices: 82954141--82954167 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82954131 AATTAATCTT
82954141 AAAAAAAAAAGAG
1 AAAAAAAAAAGAG
82954154 AAAAAAAAAAGAG
1 AAAAAAAAAAGAG
82954167 A
1 A
82954168 TTAAAAAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAGAG
Found at i:82960075 original size:40 final size:40
Alignment explanation
Indices: 82960013--82960270 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
82960003 AAGCCAAGTA
* * * * *
82960013 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
82960052 CCTTCGGGACATAGCCCGGATATAGTAACTCACACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
82960092 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
82960132 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
82960172 CCTTCTGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
82960212 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
82960252 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
82960271 TTATCATCCA
Statistics
Matches: 197, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 13 0.07
40 184 0.93
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82967310 original size:40 final size:40
Alignment explanation
Indices: 82967266--82967487 Score: 313
Period size: 40 Copynumber: 5.5 Consensus size: 40
82967256 TACTTGCTCG
* * *
82967266 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCACACC
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACA
* *
82967306 AATGCCTTCGGGACTTATCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACA
*
82967346 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACA
82967386 AATGCCTTCGGGACTTAGCCC-AGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGA-ATATAGTAACTCGCACA
* * * *
82967426 AATGCCTTCGGGACTTAGCCC-AAAACTAGTCACTAGCGCA
1 AATGCCTTCGGGACTTAGCCCGAATA-TAGTAACTCGCACA
*
82967466 AATGTCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
82967488 GTTATCATCC
Statistics
Matches: 167, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 2 0.01
40 165 0.99
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACA
Found at i:82969979 original size:19 final size:19
Alignment explanation
Indices: 82969955--82969993 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
82969945 AACCATCATC
82969955 TGACAATAACAATCGAGTA
1 TGACAATAACAATCGAGTA
82969974 TGACAATAACAATCGAGTA
1 TGACAATAACAATCGAGTA
82969993 T
1 T
82969994 TCATTGCTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23
Consensus pattern (19 bp):
TGACAATAACAATCGAGTA
Found at i:82972183 original size:19 final size:19
Alignment explanation
Indices: 82972146--82972184 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
82972136 AAAGCCGAAT
**
82972146 TCTTTCTTCTTCTTTTCTC
1 TCTTTCTTCTTCTCATCTC
*
82972165 TCTTTCTTTTTCTCATCTC
1 TCTTTCTTCTTCTCATCTC
82972184 T
1 T
82972185 TCCTTCCTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.67
Consensus pattern (19 bp):
TCTTTCTTCTTCTCATCTC
Found at i:82986384 original size:27 final size:27
Alignment explanation
Indices: 82986361--82986590 Score: 274
Period size: 27 Copynumber: 8.6 Consensus size: 27
82986351 GGATATTTTG
*
82986361 GTAATTTTACAAACTGGGGGTATTTTA
1 GTAATTTTACAAACTGGGGGTATTTCA
* *
82986388 GTAATTTTACAATCCGGGGGTATTTCA
1 GTAATTTTACAAACTGGGGGTATTTCA
* * *
82986415 GTAATTTTACAAA-TTGAGGTATTT-T
1 GTAATTTTACAAACTGGGGGTATTTCA
*
82986440 GATAATTTTACAAACTGGGGATATTTCA
1 G-TAATTTTACAAACTGGGGGTATTTCA
**
82986468 GTAATTTTACAAA-TTAGGGTATTTC-
1 GTAATTTTACAAACTGGGGGTATTTCA
*
82986493 GATAATTTTACAAATCT-AGGGTATTTCA
1 G-TAATTTTACAAA-CTGGGGGTATTTCA
*
82986521 GTAATTTTACAAACTGGGAGTATTTCA
1 GTAATTTTACAAACTGGGGGTATTTCA
*
82986548 GTAATTTTACAAA-TCGGGGGTATTTCG
1 GTAATTTTACAAACT-GGGGGTATTTCA
82986575 GTAATTTTACAAACTG
1 GTAATTTTACAAACTG
82986591 AGGTCTTAAC
Statistics
Matches: 174, Mismatches: 19, Indels: 20
0.82 0.09 0.09
Matches are distributed among these distances:
25 2 0.01
26 44 0.25
27 124 0.71
28 4 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAACTGGGGGTATTTCA
Found at i:82986446 original size:53 final size:54
Alignment explanation
Indices: 82986361--82986594 Score: 275
Period size: 53 Copynumber: 4.4 Consensus size: 54
82986351 GGATATTTTG
* *
82986361 GTAATTTTACAAACTGGGGGTATTTT-AGTAATTTTAC-AATCCGGGGGTATTTCA
1 GTAATTTTACAAA-TTGAGGTATTTTGAGTAATTTTACAAAT-CGGGGGTATTTCA
*
82986415 GTAATTTTACAAATTGAGGTATTTTGA-TAATTTTACAAA-CTGGGGATATTTCA
1 GTAATTTTACAAATTGAGGTATTTTGAGTAATTTTACAAATC-GGGGGTATTTCA
* **
82986468 GTAATTTTACAAATT-AGGGTATTTCGA-TAATTTTACAAATCTAGGGTATTTCA
1 GTAATTTTACAAATTGA-GGTATTTTGAGTAATTTTACAAATCGGGGGTATTTCA
* * * *
82986521 GTAATTTTACAAACTGGGAGTA-TTTCAGTAATTTTACAAATCGGGGGTATTTCG
1 GTAATTTTACAAATTGAG-GTATTTTGAGTAATTTTACAAATCGGGGGTATTTCA
*
82986575 GTAATTTTACAAACTGAGGT
1 GTAATTTTACAAATTGAGGT
82986595 CTTAACGACC
Statistics
Matches: 157, Mismatches: 15, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
52 2 0.01
53 95 0.61
54 60 0.38
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (54 bp):
GTAATTTTACAAATTGAGGTATTTTGAGTAATTTTACAAATCGGGGGTATTTCA
Found at i:82986457 original size:80 final size:79
Alignment explanation
Indices: 82986354--82986594 Score: 319
Period size: 80 Copynumber: 3.0 Consensus size: 79
82986344 ACTACAAGGA
* *
82986354 TATTTTGGTAATTTTACAAACTGGGGGTATTTTAGTAATTTTAC-AATCCGGGGGTATTTCAGTA
1 TATTTTGATAATTTTACAAACTGGGGGTATTTCAGTAATTTTACAAAT-CGGGGGTATTTC-GTA
82986418 ATTTTACAAATTGAGG
64 ATTTTACAAATTGAGG
* **
82986434 TATTTTGATAATTTTACAAACTGGGGATATTTCAGTAATTTTACAAAT-TAGGGTATTTCGATAA
1 TATTTTGATAATTTTACAAACTGGGGGTATTTCAGTAATTTTACAAATCGGGGGTATTTCG-TAA
82986498 TTTTACAAATCT-AGGG
65 TTTTACAAAT-TGA-GG
* *
82986514 TA-TTTCAGTAATTTTACAAACTGGGAGTATTTCAGTAATTTTACAAATCGGGGGTATTTCGGTA
1 TATTTTGA-TAATTTTACAAACTGGGGGTATTTCAGTAATTTTACAAATCGGGGGTATTTC-GTA
*
82986578 ATTTTACAAACTGAGG
64 ATTTTACAAATTGAGG
82986594 T
1 T
82986595 CTTAACGACC
Statistics
Matches: 142, Mismatches: 11, Indels: 16
0.84 0.07 0.09
Matches are distributed among these distances:
78 1 0.01
79 27 0.19
80 88 0.62
81 25 0.18
82 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (79 bp):
TATTTTGATAATTTTACAAACTGGGGGTATTTCAGTAATTTTACAAATCGGGGGTATTTCGTAAT
TTTACAAATTGAGG
Found at i:82991081 original size:2 final size:2
Alignment explanation
Indices: 82991074--82991101 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
82991064 AAATTAGTTA
82991074 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
82991102 AAGGGTTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:82991582 original size:27 final size:27
Alignment explanation
Indices: 82991551--82991606 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
82991541 GTATAAAGGG
82991551 TAAGTGTATTAAGTATAGTAAAGATGC
1 TAAGTGTATTAAGTATAGTAAAGATGC
*
82991578 TAAGTGTATTACGTATAGTAAAGATGC
1 TAAGTGTATTAAGTATAGTAAAGATGC
82991605 TA
1 TA
82991607 TATGCACAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.39, C:0.05, G:0.21, T:0.34
Consensus pattern (27 bp):
TAAGTGTATTAAGTATAGTAAAGATGC
Found at i:82997671 original size:42 final size:43
Alignment explanation
Indices: 82997571--82997718 Score: 142
Period size: 43 Copynumber: 3.5 Consensus size: 43
82997561 CAATGATGAC
* * **
82997571 GTCCCAGACGTGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACATGTAAATCAATATCGATGCCGAT
* *
82997614 ATCCCAGACAAGGTCTTACATG-AAATCAGATA-CGATGCCGAT
1 GTCCCAGACATGGTCTTACATGTAAATCA-ATATCGATGCCGAT
* * * * *
82997656 GTCCCAAACATGGTCTTATACGTAAATCTCA-ATCGAGGCCTG-T
1 GTCCCAGACATGGTCTTACATGTAAATC-AATATCGATGCC-GAT
82997699 GTCCCAGACATGGTCTTACA
1 GTCCCAGACATGGTCTTACA
82997719 CGATGTCACA
Statistics
Matches: 85, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
42 31 0.36
43 53 0.62
44 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGTAAATCAATATCGATGCCGAT
Found at i:82999476 original size:25 final size:25
Alignment explanation
Indices: 82999444--82999494 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
82999434 ATTTCAAAAC
82999444 AAAATTTTAGAAAAACCCTTTTCAA
1 AAAATTTTAGAAAAACCCTTTTCAA
82999469 AAAATTTTAGAAAAACCCTTTTCAA
1 AAAATTTTAGAAAAACCCTTTTCAA
82999494 A
1 A
82999495 CCCCAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.16, G:0.04, T:0.31
Consensus pattern (25 bp):
AAAATTTTAGAAAAACCCTTTTCAA
Found at i:83006822 original size:43 final size:43
Alignment explanation
Indices: 83006764--83006911 Score: 117
Period size: 43 Copynumber: 3.5 Consensus size: 43
83006754 CAATGCCAAC
83006764 GTCCCAGAC-GTGGTCTTACATGTAATTCAATATCGATGCCTTT
1 GTCCCAGACAG-GGTCTTACATGTAATTCAATATCGATGCCTTT
* * ** * **
83006807 GTCCCAGACAGGGTCTTACACGAAATAAAATA-CGATGTCGAT
1 GTCCCAGACAGGGTCTTACATGTAATTCAATATCGATGCCTTT
* * * *
83006849 GTCCTAGACAAGGTCTTAAATGTAAATCTC-A-ATCGA-GGCTTGT
1 GTCCCAGACAGGGTCTTACATGT-AAT-TCAATATCGATGCCTT-T
*
83006892 GTCCCAGACACGGTCTTACA
1 GTCCCAGACAGGGTCTTACA
83006912 CGATGTCATA
Statistics
Matches: 80, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
42 28 0.35
43 51 0.64
44 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (43 bp):
GTCCCAGACAGGGTCTTACATGTAATTCAATATCGATGCCTTT
Found at i:83009370 original size:21 final size:22
Alignment explanation
Indices: 83009346--83009388 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
83009336 CTGTCGAAAA
83009346 TCATA-AAAAATAATAAAAATT
1 TCATATAAAAATAATAAAAATT
* *
83009367 TCATATAAAATTAATTAAAATT
1 TCATATAAAAATAATAAAAATT
83009389 CAACATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (22 bp):
TCATATAAAAATAATAAAAATT
Found at i:83009390 original size:21 final size:20
Alignment explanation
Indices: 83009342--83009390 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
83009332 AAATCTGTCG
83009342 AAAA-TCATAAAAAATAATA
1 AAAATTCATAAAAAATAATA
* *
83009361 AAAATTTCATATAAAATTAATT
1 AAAA-TTCATA-AAAAATAATA
83009383 AAAATTCA
1 AAAATTCA
83009391 ACATATTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 4 0.16
21 9 0.36
22 12 0.48
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAATTCATAAAAAATAATA
Found at i:83011349 original size:3 final size:3
Alignment explanation
Indices: 83011341--83011384 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
83011331 CTCTATGGGA
83011341 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
83011385 GGGATCCTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:83019230 original size:49 final size:49
Alignment explanation
Indices: 83019057--83019247 Score: 231
Period size: 50 Copynumber: 3.8 Consensus size: 49
83019047 TGTGAGTTCG
* * * *
83019057 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAG-ATA-TGTGGTCA
* ** * *
83019108 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTGAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAT-ATGTGGTCA
* *
83019158 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTAT-TGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGA-TATGTGGTCA
*
83019207 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
83019248 GCTTTGGCTA
Statistics
Matches: 122, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
48 2 0.02
49 41 0.34
50 45 0.37
51 34 0.28
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATATGTGGTCA
Found at i:83023971 original size:50 final size:49
Alignment explanation
Indices: 83023838--83024032 Score: 205
Period size: 50 Copynumber: 3.9 Consensus size: 49
83023828 ATATATTGTG
* * * * *
83023838 AGGTCGCATGTGTGGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGT
* * **
83023890 -GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT
*
83023938 GAGGTCACATGTGCAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGT
1 -AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGT
* * * *
83023988 TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
83024033 TAGCTTCGGC
Statistics
Matches: 120, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 40 0.33
50 41 0.34
51 34 0.28
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (49 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGT
Found at i:83025727 original size:44 final size:45
Alignment explanation
Indices: 83025621--83025840 Score: 186
Period size: 44 Copynumber: 5.0 Consensus size: 45
83025611 TAGGATTCCA
* * * * *
83025621 ATATGTGTTTTCTTGTAAGACCACGTCTAGGACGTTGACATTGAT
1 ATATGTGTTTTCCTGTAAGACCACGTCTGGGACATTGGCATCGAT
* *
83025666 ATATGTGTTTTCGTGTAAGACCA-GTCTGGGACACTGGCATCGAT
1 ATATGTGTTTTCCTGTAAGACCACGTCTGGGACATTGGCATCGAT
* *
83025710 ATATGTGTTTTCCTGTAAGACCACATTTGGGACATTGGCATCG--
1 ATATGTGTTTTCCTGTAAGACCACGTCTGGGACATTGGCATCGAT
* * * * * * * * *
83025753 ATAGGTGGTTACGTGTAAGACTATGTCTAGGACATCGACATCG-T
1 ATATGTGTTTTCCTGTAAGACCACGTCTGGGACATTGGCATCGAT
* * *
83025797 AT-T-T-TATTCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGAT
1 ATATGTGTTTTCCTGTAAGACCAC-GTCTGGGACATTGGCATCGAT
83025839 AT
1 AT
83025841 GAGATGACAT
Statistics
Matches: 140, Mismatches: 31, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
41 26 0.19
42 4 0.03
43 32 0.23
44 40 0.29
45 38 0.27
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (45 bp):
ATATGTGTTTTCCTGTAAGACCACGTCTGGGACATTGGCATCGAT
Found at i:83025836 original size:41 final size:41
Alignment explanation
Indices: 83025675--83025840 Score: 115
Period size: 41 Copynumber: 3.9 Consensus size: 41
83025665 TATATGTGTT
* *
83025675 TTCGTGTAAGA-CCAGTCTGGGACACTGGCATCGATATATGTGTT
1 TTCGTGTAAGACCCTGTCTGGGACA-TGGCATCGATAT-T-T-TA
* ** **
83025719 TTCCTGTAAGACCACAT-T-TGGGACATTGGCATCGATAGGTGG
1 TTCGTGTAAGACC-C-TGTCTGGGACA-TGGCATCGATATTTTA
** * *
83025761 TTACGTGTAAGACTATGTCTAGGACATCGACATCG-TATTTTA
1 TT-CGTGTAAGACCCTGTCTGGGACAT-GGCATCGATATTTTA
83025803 TTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATAT
1 TTCGTGTAAGACCCTGTCTGGGACA-TGGCATCGATAT
83025841 GAGATGACAT
Statistics
Matches: 93, Mismatches: 20, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
41 27 0.29
42 13 0.14
43 22 0.24
44 10 0.11
45 19 0.20
46 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (41 bp):
TTCGTGTAAGACCCTGTCTGGGACATGGCATCGATATTTTA
Found at i:83029816 original size:17 final size:17
Alignment explanation
Indices: 83029794--83029828 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
83029784 ACAAACTTAG
83029794 TTTTAATAACTCAAGTA
1 TTTTAATAACTCAAGTA
83029811 TTTTAATAACTCAAGTA
1 TTTTAATAACTCAAGTA
83029828 T
1 T
83029829 ACATAAACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (17 bp):
TTTTAATAACTCAAGTA
Found at i:83032032 original size:11 final size:11
Alignment explanation
Indices: 83032016--83032049 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
83032006 CTTCCTCCTC
83032016 TCCATTCCACA
1 TCCATTCCACA
83032027 TCCATTCCACA
1 TCCATTCCACA
83032038 TCCATTCCACA
1 TCCATTCCACA
83032049 T
1 T
83032050 GCTTATATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.26, C:0.44, G:0.00, T:0.29
Consensus pattern (11 bp):
TCCATTCCACA
Found at i:83032585 original size:20 final size:20
Alignment explanation
Indices: 83032560--83032599 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
83032550 ACTAGACTAT
83032560 TTTAATTAAATCTATAAATA
1 TTTAATTAAATCTATAAATA
*
83032580 TTTAATTAAATCTCTAAATA
1 TTTAATTAAATCTATAAATA
83032600 AATTTATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTAATTAAATCTATAAATA
Found at i:83035494 original size:28 final size:28
Alignment explanation
Indices: 83035461--83035516 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
83035451 TCTTATTATA
* *
83035461 AAAGTACAATATTCTATGTTATTAAGTT
1 AAAGTACAATATGCTATGCTATTAAGTT
83035489 AAAGTACAATATGCTATGCTATTAAGTT
1 AAAGTACAATATGCTATGCTATTAAGTT
83035517 TACTCTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (28 bp):
AAAGTACAATATGCTATGCTATTAAGTT
Found at i:83036396 original size:61 final size:61
Alignment explanation
Indices: 83036281--83036428 Score: 152
Period size: 61 Copynumber: 2.4 Consensus size: 61
83036271 TGGGGTGTGT
* * ** **
83036281 CAACTCTGGATAGGAAAACCTTTTTGGTGAGTACTGGATATAAAGGACAACCTTTGTGGAA
1 CAACTCTGGATAGGAAAGCCTTTGTGACGAGTACTAAATATAAAGGACAACCTTTGTGGAA
* * * * * *
83036342 CAACTCTGGATAGGAAAGCCTCTGTGACGAGTACTAAATGTAAATGATAGCCTTTGTGGCA
1 CAACTCTGGATAGGAAAGCCTTTGTGACGAGTACTAAATATAAAGGACAACCTTTGTGGAA
* ** *
83036403 TAACTCTACATAAGAAAGCCTTTGTG
1 CAACTCTGGATAGGAAAGCCTTTGTG
83036429 GCAAAACTCT
Statistics
Matches: 70, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
61 70 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (61 bp):
CAACTCTGGATAGGAAAGCCTTTGTGACGAGTACTAAATATAAAGGACAACCTTTGTGGAA
Found at i:83045843 original size:151 final size:151
Alignment explanation
Indices: 83045614--83045914 Score: 602
Period size: 151 Copynumber: 2.0 Consensus size: 151
83045604 CCCTATCGGG
83045614 ACAGTGGTATCAATATTCGATTATATGTAAGACCACGTCTGGGACGTTGGCATTGTACGAGCTTT
1 ACAGTGGTATCAATATTCGATTATATGTAAGACCACGTCTGGGACGTTGGCATTGTACGAGCTTT
83045679 TCGAGCTATCCGAGTATCCTTATTGATTCCAAATGGTTCAATGGGAATGTTAAGACGAGACCAAA
66 TCGAGCTATCCGAGTATCCTTATTGATTCCAAATGGTTCAATGGGAATGTTAAGACGAGACCAAA
83045744 TGTGAAATTGAACTAAATGGT
131 TGTGAAATTGAACTAAATGGT
83045765 ACAGTGGTATCAATATTCGATTATATGTAAGACCACGTCTGGGACGTTGGCATTGTACGAGCTTT
1 ACAGTGGTATCAATATTCGATTATATGTAAGACCACGTCTGGGACGTTGGCATTGTACGAGCTTT
83045830 TCGAGCTATCCGAGTATCCTTATTGATTCCAAATGGTTCAATGGGAATGTTAAGACGAGACCAAA
66 TCGAGCTATCCGAGTATCCTTATTGATTCCAAATGGTTCAATGGGAATGTTAAGACGAGACCAAA
83045895 TGTGAAATTGAACTAAATGG
131 TGTGAAATTGAACTAAATGG
83045915 CTCAGGTACA
Statistics
Matches: 150, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
151 150 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (151 bp):
ACAGTGGTATCAATATTCGATTATATGTAAGACCACGTCTGGGACGTTGGCATTGTACGAGCTTT
TCGAGCTATCCGAGTATCCTTATTGATTCCAAATGGTTCAATGGGAATGTTAAGACGAGACCAAA
TGTGAAATTGAACTAAATGGT
Found at i:83047569 original size:13 final size:13
Alignment explanation
Indices: 83047551--83047575 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83047541 GGTTTTTTTA
83047551 TTAAACTAATTAT
1 TTAAACTAATTAT
83047564 TTAAACTAATTA
1 TTAAACTAATTA
83047576 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:83077935 original size:47 final size:47
Alignment explanation
Indices: 83077857--83078048 Score: 192
Period size: 47 Copynumber: 4.1 Consensus size: 47
83077847 TGGTTGGACC
* * *
83077857 ATGGCAACA-TGTGATATGCGATTTCCATATAAGACCATATCTGGGAT
1 ATGGCATCAGTGTGATATGAG-CTTCCATATAAGACCATATCTGGGAT
* * * *
83077904 ATGGAATCGGTGTGTTATGAGCTTCCGTATAAGACCATATCTGGGAT
1 ATGGCATCAGTGTGATATGAGCTTCCATATAAGACCATATCTGGGAT
* * * * * *
83077951 ATGGCATCCGTGTGATACGTGCTTCTATGTAATACCATATCTGGGAT
1 ATGGCATCAGTGTGATATGAGCTTCCATATAAGACCATATCTGGGAT
* * * *
83077998 ATGGCATCAGTGTGATATGTG-ATCCATGTAAGACCATGGT-TGGGAT
1 ATGGCATCAGTGTGATATGAGCTTCCATATAAGACCAT-ATCTGGGAT
83078044 ATGGC
1 ATGGC
83078049 TTCGATGCGT
Statistics
Matches: 121, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
46 24 0.20
47 88 0.73
48 9 0.07
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (47 bp):
ATGGCATCAGTGTGATATGAGCTTCCATATAAGACCATATCTGGGAT
Found at i:83085516 original size:27 final size:27
Alignment explanation
Indices: 83085457--83085689 Score: 218
Period size: 27 Copynumber: 8.7 Consensus size: 27
83085447 TAATAAAGAG
* *
83085457 AAATTACCGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCAATTTGTA
*
83085483 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
* * *
83085510 AAATTACCGAAACACCCTCGATTTTTA
1 AAATTACCGAAATACCCTCAATTTGTA
* ** * *
83085537 AAATGACTAAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
*
83085564 AAATTACCGAAATACCCTTAATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
*
83085591 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTA
* * * * *
83085618 AAATTATCGAAACACCCCCGATTTGCA
1 AAATTACCGAAATACCCTCAATTTGTA
* * * ** *
83085645 CAATTATCGACATACCCT-TGTAGTGTA
1 AAATTACCGAAATACCCTCAAT-TTGTA
*
83085672 AAATTACCGAAACACCCT
1 AAATTACCGAAATACCCT
83085690 TGTAGTGTAA
Statistics
Matches: 168, Mismatches: 37, Indels: 3
0.81 0.18 0.01
Matches are distributed among these distances:
26 20 0.12
27 148 0.88
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCAATTTGTA
Found at i:83085572 original size:54 final size:54
Alignment explanation
Indices: 83085457--83085689 Score: 265
Period size: 54 Copynumber: 4.3 Consensus size: 54
83085447 TAATAAAGAG
* *
83085457 AAATTACCGAAATACCCTCGA-TTGTGAAATTACTGAAATACCCTCAATTTGTA
1 AAATTACCGAAACACCCTCGATTTGTAAAATTACTGAAATACCCTCAATTTGTA
* * * * *
83085510 AAATTACCGAAACACCCTCGATTTTTAAAATGACTAAAACACCCTCGATTTGTA
1 AAATTACCGAAACACCCTCGATTTGTAAAATTACTGAAATACCCTCAATTTGTA
* **
83085564 AAATTACCGAAATACCCTTAATTTGTAAAATTACTGAAATACCCTCAATTTGTA
1 AAATTACCGAAACACCCTCGATTTGTAAAATTACTGAAATACCCTCAATTTGTA
* * * * * ** *
83085618 AAATTATCGAAACACCCCCGATTTGCACAATTA-TCGACATACCCT-TGTAGTGTA
1 AAATTACCGAAACACCCTCGATTTGTAAAATTACT-GAAATACCCTCAAT-TTGTA
83085672 AAATTACCGAAACACCCT
1 AAATTACCGAAACACCCT
83085690 TGTAGTGTAA
Statistics
Matches: 149, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
53 22 0.15
54 127 0.85
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (54 bp):
AAATTACCGAAACACCCTCGATTTGTAAAATTACTGAAATACCCTCAATTTGTA
Found at i:83085578 original size:81 final size:80
Alignment explanation
Indices: 83085470--83085689 Score: 246
Period size: 81 Copynumber: 2.7 Consensus size: 80
83085460 TTACCGAAAT
* * *
83085470 ACCCTCGA-TTGTGAAATTACTGAAATACCCTCAATTTGTAAAATTACCGAAACACCCTCGATTT
1 ACCCTCGATTTGTAAAATTACCGAAATACCCT-AATTTGTAAAATTACCGAAACACCCTCAATTT
*
83085534 TTAAAATGA-CTAAAAC
65 GTAAAATGATC-AAAAC
* *
83085550 ACCCTCGATTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTACTGAAATACCCTCAATTT
1 ACCCTCGATTTGTAAAATTACCGAAATACCC-TAATTTGTAAAATTACCGAAACACCCTCAATTT
* *
83085615 GTAAAATTATCGAAAC
65 GTAAAATGATCAAAAC
* * * * * ** *
83085631 ACCCCCGATTTGCACAATTATCGACATACCCTTGTAGTGTAAAATTACCGAAACACCCT
1 ACCCTCGATTTGTAAAATTACCGAAATACCCTAAT-TTGTAAAATTACCGAAACACCCT
83085690 TGTAGTGTAA
Statistics
Matches: 118, Mismatches: 18, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
80 10 0.08
81 106 0.90
82 2 0.02
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (80 bp):
ACCCTCGATTTGTAAAATTACCGAAATACCCTAATTTGTAAAATTACCGAAACACCCTCAATTTG
TAAAATGATCAAAAC
Found at i:83085690 original size:27 final size:27
Alignment explanation
Indices: 83085658--83085731 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
83085648 TTATCGACAT
* *
83085658 ACCCTTGTAGTGTAAAATTACCGAAAC
1 ACCCTTGTAGTGTAAAATGAACGAAAC
* *
83085685 ACCCTTGTAGTGTAAAATGAACGACAT
1 ACCCTTGTAGTGTAAAATGAACGAAAC
* *
83085712 ACCCCTGTAGGGTAAAATGA
1 ACCCTTGTAGTGTAAAATGA
83085732 CTATTTTGCC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.24
Consensus pattern (27 bp):
ACCCTTGTAGTGTAAAATGAACGAAAC
Found at i:83086206 original size:11 final size:11
Alignment explanation
Indices: 83086190--83086215 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
83086180 ATTGCATGTA
83086190 TGATATTATTG
1 TGATATTATTG
83086201 TGATATTATTG
1 TGATATTATTG
83086212 TGAT
1 TGAT
83086216 GTGGTTCGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:83091806 original size:46 final size:46
Alignment explanation
Indices: 83091702--83091876 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
83091692 CATTATGTGG
**
83091702 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTAAGACAAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATTAAGACAAGA
* * *
83091750 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGACGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCATTAAGAC-AAGA
* * * * * *
83091796 GCCAGTGTAAGACATGTCTGGGATATGCAT-TG-ACTACA-AGAGGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCATTA-AGACAAGA
*
83091840 GTCAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCA
83091877 CCTGCACCCA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
44 14 0.14
45 15 0.15
46 46 0.45
47 16 0.16
48 12 0.12
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCATTAAGACAAGA
Found at i:83092011 original size:34 final size:34
Alignment explanation
Indices: 83091968--83092035 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
83091958 AAGGAAAGTA
*
83091968 AAACCTTTTTGTGAGTGGCACAGGTACCTACTTG
1 AAACCTTTTTGTGAGTGACACAGGTACCTACTTG
83092002 AAACCTTTTTGTGAGTGACACAGGTACCTACTTG
1 AAACCTTTTTGTGAGTGACACAGGTACCTACTTG
83092036 GTATGTATGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (34 bp):
AAACCTTTTTGTGAGTGACACAGGTACCTACTTG
Found at i:83093945 original size:10 final size:10
Alignment explanation
Indices: 83093930--83093954 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
83093920 AAATCTGTCA
83093930 AAAATAAATC
1 AAAATAAATC
83093940 AAAATAAATC
1 AAAATAAATC
83093950 AAAAT
1 AAAAT
83093955 TTATTATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (10 bp):
AAAATAAATC
Found at i:83095523 original size:27 final size:27
Alignment explanation
Indices: 83095493--83095670 Score: 218
Period size: 27 Copynumber: 6.6 Consensus size: 27
83095483 TAATAAAGAG
*
83095493 AAATTA-CTGAAATACCCCCGGTTTGTA
1 AAATTATC-GAAATACCCCCGATTTGTA
* * *
83095520 AAATTA-CGAAGTACCCCTGGTTTGTA
1 AAATTATCGAAATACCCCCGATTTGTA
*
83095546 AAATTACCGAAATACCCCC-AGTTTGTA
1 AAATTATCGAAATACCCCCGA-TTTGTA
*
83095573 AAATTATCGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCCCGATTTGTA
* *
83095600 AAATTATCGAAATAGCCTCGATTTGTA
1 AAATTATCGAAATACCCCCGATTTGTA
* * *
83095627 AAATTATCGAAACACCCCTGATTTTTA
1 AAATTATCGAAATACCCCCGATTTGTA
83095654 AAATTATCGAAATACCC
1 AAATTATCGAAATACCC
83095671 TTGTAATGTA
Statistics
Matches: 134, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
26 23 0.17
27 110 0.82
28 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (27 bp):
AAATTATCGAAATACCCCCGATTTGTA
Found at i:83095681 original size:54 final size:54
Alignment explanation
Indices: 83095515--83095695 Score: 199
Period size: 54 Copynumber: 3.4 Consensus size: 54
83095505 TACCCCCGGT
* * * *
83095515 TTGTAAAATTA-CGAAGTACCCCTGGTTTGTAAAATTACCGAAATACCCCCAGT-
1 TTGTAAAATTATCGAAATACCCCTGATTTGTAAAATTATCGAAATA-CCCTAGTA
* *
83095568 TTGTAAAATTATCGAAATA-CCCTCGATTTGTAAAATTATCGAAATAGCCTCG-A
1 TTGTAAAATTATCGAAATACCCCT-GATTTGTAAAATTATCGAAATACCCTAGTA
* * *
83095621 TTTGTAAAATTATCGAAACACCCCTGATTTTTAAAATTATCGAAATACCCTTGTA
1 -TTGTAAAATTATCGAAATACCCCTGATTTGTAAAATTATCGAAATACCCTAGTA
* * *
83095676 ATGTAAAATTACCAAAATAC
1 TTGTAAAATTATCGAAATAC
83095696 TCTTGTAGTG
Statistics
Matches: 108, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
53 18 0.17
54 85 0.79
55 5 0.05
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (54 bp):
TTGTAAAATTATCGAAATACCCCTGATTTGTAAAATTATCGAAATACCCTAGTA
Found at i:83095682 original size:27 final size:27
Alignment explanation
Indices: 83095515--83095711 Score: 163
Period size: 27 Copynumber: 7.3 Consensus size: 27
83095505 TACCCCCGGT
* *
83095515 TTGTAAAATTA-CGAAGTACCCCTGGT-
1 TTGTAAAATTATCGAAATA-CCCTTGTA
* **
83095541 TTGTAAAATTACCGAAATACCCCCAGT-
1 TTGTAAAATTATCGAAATA-CCCTTGTA
*
83095568 TTGTAAAATTATCGAAATACCCTCG-A
1 TTGTAAAATTATCGAAATACCCTTGTA
* *
83095594 TTTGTAAAATTATCGAAATAGCCTCG-A
1 -TTGTAAAATTATCGAAATACCCTTGTA
* *
83095621 TTTGTAAAATTATCGAAACACCCCTG-A
1 -TTGTAAAATTATCGAAATACCCTTGTA
*
83095648 TTTTTAAAATTATCGAAATACCCTTGTA
1 -TTGTAAAATTATCGAAATACCCTTGTA
* * * *
83095676 ATGTAAAATTACCAAAATACTCTTGTA
1 TTGTAAAATTATCGAAATACCCTTGTA
*
83095703 GTGTAAAAT
1 TTGTAAAAT
83095712 GACCGACATA
Statistics
Matches: 147, Mismatches: 20, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
26 15 0.10
27 131 0.89
28 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTATCGAAATACCCTTGTA
Found at i:83095694 original size:81 final size:81
Alignment explanation
Indices: 83095540--83095694 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 81
83095530 GTACCCCTGG
* *
83095540 TTTGTAAAATTACCGAAATACCCCCAGTTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATT
1 TTTGTAAAATTACCGAAACACCCCCAGTTTGTAAAATTATCGAAATACCCTCGATATGTAAAATT
* *
83095605 ATCGAAATAGCCTCGA
66 ACCAAAATAGCCTCGA
* * * *
83095621 TTTGTAAAATTATCGAAACA-CCCCTGATTTTTAAAATTATCGAAATACCCTTG-TAATGTAAAA
1 TTTGTAAAATTACCGAAACACCCCCAG-TTTGTAAAATTATCGAAATACCCTCGAT-ATGTAAAA
83095684 TTACCAAAATA
64 TTACCAAAATA
83095695 CTCTTGTAGT
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 6 0.09
81 58 0.91
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.32
Consensus pattern (81 bp):
TTTGTAAAATTACCGAAACACCCCCAGTTTGTAAAATTATCGAAATACCCTCGATATGTAAAATT
ACCAAAATAGCCTCGA
Found at i:83098119 original size:26 final size:27
Alignment explanation
Indices: 83098090--83098144 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
83098080 CATGCTCAAT
*
83098090 ATAGTCA-TACATCTCATAAGGGCATA
1 ATAGTCATTACACCTCATAAGGGCATA
**
83098116 ATAGTCATTTTACCTCATAAGGGCATA
1 ATAGTCATTACACCTCATAAGGGCATA
83098143 AT
1 AT
83098145 GGACATTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (27 bp):
ATAGTCATTACACCTCATAAGGGCATA
Found at i:83106906 original size:21 final size:21
Alignment explanation
Indices: 83106880--83106920 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
83106870 GTCAAAATGG
* *
83106880 CCACACAGGCGTGTTGCCCTT
1 CCACACAGGCATGTGGCCCTT
83106901 CCACACAGGCATGTGGCCCT
1 CCACACAGGCATGTGGCCCT
83106921 GTTTCACGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.39, G:0.24, T:0.20
Consensus pattern (21 bp):
CCACACAGGCATGTGGCCCTT
Found at i:83141484 original size:55 final size:55
Alignment explanation
Indices: 83141425--83141554 Score: 145
Period size: 55 Copynumber: 2.4 Consensus size: 55
83141415 CCCGTGGAAA
* ** * * *
83141425 TTTGATAGGTTCGACCATGGGTGTTCGACACGGGCGTGGCGCACGCCCGTGCTGT
1 TTTGACAGGTTCGACCATGGGTCCTCCACACGGGCGTGGCACACACCCGTGCTGT
* * *
83141480 TTTGACAGGTTC-ATCCATGGTTCCTCCACACGGGCGTGTCACACACCCGTGTTGT
1 TTTGACAGGTTCGA-CCATGGGTCCTCCACACGGGCGTGGCACACACCCGTGCTGT
* *
83141535 TTTGGCAGGCTCGACCATGG
1 TTTGACAGGTTCGACCATGG
83141555 CCATGTCACA
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
54 1 0.02
55 60 0.97
56 1 0.02
ACGTcount: A:0.15, C:0.28, G:0.31, T:0.27
Consensus pattern (55 bp):
TTTGACAGGTTCGACCATGGGTCCTCCACACGGGCGTGGCACACACCCGTGCTGT
Found at i:83145272 original size:14 final size:15
Alignment explanation
Indices: 83145248--83145277 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
83145238 GGATATCAAA
83145248 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
83145263 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
83145277 A
1 A
83145278 AGTTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:83150547 original size:17 final size:19
Alignment explanation
Indices: 83150520--83150557 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
83150510 ATGTAAAACC
83150520 TATGAGTATGAAC-TTTGG
1 TATGAGTATGAACTTTTGG
83150538 TATGAG-ATGAACTTTTGG
1 TATGAGTATGAACTTTTGG
83150556 TA
1 TA
83150558 AGAATGCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.29, C:0.05, G:0.26, T:0.39
Consensus pattern (19 bp):
TATGAGTATGAACTTTTGG
Found at i:83154405 original size:14 final size:14
Alignment explanation
Indices: 83154386--83154415 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
83154376 AGAGTTTGTT
83154386 ATTTATAGCGATGC
1 ATTTATAGCGATGC
83154400 ATTTATAGCGATGC
1 ATTTATAGCGATGC
83154414 AT
1 AT
83154416 CACTTAATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (14 bp):
ATTTATAGCGATGC
Found at i:83155022 original size:77 final size:77
Alignment explanation
Indices: 83154908--83155068 Score: 250
Period size: 77 Copynumber: 2.1 Consensus size: 77
83154898 TTGGTTAGTG
* *
83154908 ATTCAGATTTTCATGTCGGACCAAATGATTGTTTGATGTTCTGAGGTAGAGTTTGTGTACCAAAG
1 ATTCAGATTTTCATGTCAGACCAAATGACTGTTTGATGTTCTGAGGTAGAGTTTGTGTACCAAAG
*
83154973 AATTATGAACTT
66 AATGATGAACTT
** ** *
83154985 ATTCAGATTTTCATGTCAGACCTGATGACTGTTTGATGTTCTGAGGTAGAGTTTGTGTACTGAAT
1 ATTCAGATTTTCATGTCAGACCAAATGACTGTTTGATGTTCTGAGGTAGAGTTTGTGTACCAAAG
83155050 AATGATGAACTT
66 AATGATGAACTT
83155062 ATTCAGA
1 ATTCAGA
83155069 AAATTCTTCA
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
77 76 1.00
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (77 bp):
ATTCAGATTTTCATGTCAGACCAAATGACTGTTTGATGTTCTGAGGTAGAGTTTGTGTACCAAAG
AATGATGAACTT
Found at i:83169054 original size:39 final size:39
Alignment explanation
Indices: 83169009--83169175 Score: 253
Period size: 39 Copynumber: 4.3 Consensus size: 39
83168999 GGTCATTAAC
** *
83169009 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* * * *
83169048 CTGGATATATTTCTAGCATATAGCCTGCGAACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
*
83169087 CCGGATATTTTTCCAGCATATAGCCTACGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
83169126 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
*
83169165 CCGAATATTTT
1 CCGGATATTTT
83169176 CAATCTCATA
Statistics
Matches: 114, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 114 1.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:83176325 original size:15 final size:15
Alignment explanation
Indices: 83176302--83176350 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
83176292 ACGGAGAAGC
*
83176302 CCAAAATAAAGAAAT
1 CCAAGATAAAGAAAT
*
83176317 CGAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
* *
83176332 CCATGATAAGGAAAT
1 CCAAGATAAAGAAAT
83176347 CCAA
1 CCAA
83176351 ATTACAATAC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:83189330 original size:19 final size:19
Alignment explanation
Indices: 83189306--83189344 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
83189296 TGAGACAGGG
*
83189306 GACACGCCCATGTGCTCTA
1 GACACGCCCATGTCCTCTA
* *
83189325 GACACGTCCGTGTCCTCTA
1 GACACGCCCATGTCCTCTA
83189344 G
1 G
83189345 CCATGTAACT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.18, C:0.36, G:0.23, T:0.23
Consensus pattern (19 bp):
GACACGCCCATGTCCTCTA
Found at i:83190794 original size:43 final size:43
Alignment explanation
Indices: 83190759--83190863 Score: 174
Period size: 43 Copynumber: 2.4 Consensus size: 43
83190749 AACTTGGACT
* * *
83190759 ACTCAATGATCTCAGATGCTTACATCCATAATGAACTCAAACC
1 ACTCAATGAGCTCGGATGCTTACATCCATAATGAACTCGAACC
*
83190802 ACTCAACGAGCTCGGATGCTTACATCCATAATGAACTCGAACC
1 ACTCAATGAGCTCGGATGCTTACATCCATAATGAACTCGAACC
83190845 ACTCAATGAGCTCGGATGC
1 ACTCAATGAGCTCGGATGC
83190864 CACATATATA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.23
Consensus pattern (43 bp):
ACTCAATGAGCTCGGATGCTTACATCCATAATGAACTCGAACC
Found at i:83207459 original size:22 final size:21
Alignment explanation
Indices: 83207415--83207456 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
83207405 TTCAATTTAC
83207415 ACAAAAAGTAGCGATACCTTT
1 ACAAAAAGTAGCGATACCTTT
**
83207436 ACAAAAAGTATTGATACCTTT
1 ACAAAAAGTAGCGATACCTTT
83207457 TACCAGGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.29
Consensus pattern (21 bp):
ACAAAAAGTAGCGATACCTTT
Found at i:83228750 original size:29 final size:29
Alignment explanation
Indices: 83228684--83228794 Score: 102
Period size: 29 Copynumber: 3.9 Consensus size: 29
83228674 AATTTCACAT
* * *
83228684 ACCTGTATCTGACGCATTAAGCCC-AATC
1 ACCTGTATATGGCCCATTAAGCCCAAATC
83228712 A--TGTTCATATGGCCCATTAAGCCCAAATC
1 ACCTG-T-ATATGGCCCATTAAGCCCAAATC
* *
83228741 ACCTGTATATGGCCCACTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATC
* * * *
83228770 ACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCA
83228795 GTCACATTCA
Statistics
Matches: 69, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
26 2 0.03
27 1 0.01
28 16 0.23
29 47 0.68
30 1 0.01
31 2 0.03
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (29 bp):
ACCTGTATATGGCCCATTAAGCCCAAATC
Found at i:83236076 original size:28 final size:28
Alignment explanation
Indices: 83236011--83236162 Score: 256
Period size: 28 Copynumber: 5.5 Consensus size: 28
83236001 TAAATTGTAC
83236011 AGCACTAAGTGTGCGAGTTTGATTA-GT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
83236038 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
83236066 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
83236094 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
83236122 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
83236149 AGCA-TGAGTGTGCG
1 AGCACTAAGTGTGCG
83236163 GACTTAATAT
Statistics
Matches: 122, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
26 9 0.07
27 39 0.32
28 74 0.61
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:83236144 original size:83 final size:82
Alignment explanation
Indices: 83236011--83236162 Score: 252
Period size: 83 Copynumber: 1.8 Consensus size: 82
83236001 TAAATTGTAC
* *
83236011 AGCACTAAGTGTGCGAGTTTGATTAGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGATTAATAGCACTAAGTGTGCGAGTTTGATTATATAGCA-TAAGT
83236076 GTGCGAGTTTGATTATGT
65 GTGCGAGTTTGATTATGT
*
83236094 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCATGAGT
1 AGCACTAAGTGTGCGAGTTTGATTA-ATAGCACTAAGTGTGCGAGTTTGATTATATAGCATAAGT
83236158 GTGCG
65 GTGCG
83236163 GACTTAATAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
82 9 0.14
83 38 0.58
84 18 0.28
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTTGATTAATAGCACTAAGTGTGCGAGTTTGATTATATAGCATAAGTG
TGCGAGTTTGATTATGT
Found at i:83236176 original size:55 final size:56
Alignment explanation
Indices: 83235986--83236162 Score: 261
Period size: 56 Copynumber: 3.2 Consensus size: 56
83235976 GAGATTGGCG
* * * *
83235986 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTA-GTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
83236042 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
83236098 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
83236153 -TGAGTGTGCG
1 CTAAGTGTGCG
83236163 GACTTAATAT
Statistics
Matches: 112, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
54 9 0.08
55 42 0.38
56 61 0.54
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:83263460 original size:28 final size:28
Alignment explanation
Indices: 83263420--83263572 Score: 265
Period size: 28 Copynumber: 5.5 Consensus size: 28
83263410 TAAATTGTAC
83263420 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
83263448 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
83263476 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
83263504 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
83263532 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
83263559 AGCA-TGAGTGTGCG
1 AGCACTAAGTGTGCG
83263573 GACTTAATAT
Statistics
Matches: 123, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
26 9 0.07
27 14 0.11
28 100 0.81
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:83263486 original size:56 final size:56
Alignment explanation
Indices: 83263395--83263572 Score: 270
Period size: 56 Copynumber: 3.2 Consensus size: 56
83263385 GAGATTGGCG
* * * *
83263395 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
83263452 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
83263508 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
83263563 -TGAGTGTGCG
1 CTAAGTGTGCG
83263573 GACTTAATAT
Statistics
Matches: 113, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
54 9 0.08
55 13 0.12
56 76 0.67
57 15 0.13
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:83284907 original size:46 final size:46
Alignment explanation
Indices: 83284857--83285032 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
83284847 TGGTTGAGCA
83284857 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
83284903 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
83284948 CATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-C
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83284995 ACCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83285033 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 16, Indels: 20
0.74 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 60 0.58
47 26 0.25
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:83285013 original size:93 final size:93
Alignment explanation
Indices: 83284854--83285025 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
83284844 GGATGGTTGA
* **
83284854 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCACCGAACTCGTTGAGT
*
83284919 TGAGTTCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
83284947 GCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-CACCTGAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCACC-GAACTCGTTGAG
83285011 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
83285026 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCACCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:83297037 original size:5 final size:5
Alignment explanation
Indices: 83297027--83297052 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
83297017 TTTATACTTT
83297027 TTTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC TTTTC TTTTC TTTTC TTTTC T
83297053 CCTCTTTTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:83297058 original size:15 final size:15
Alignment explanation
Indices: 83297027--83297061 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
83297017 TTTATACTTT
**
83297027 TTTTCTTTTCTTTTC
1 TTTTCTTTTCTCCTC
83297042 TTTTCTTTTCTCCTC
1 TTTTCTTTTCTCCTC
83297057 TTTTC
1 TTTTC
83297062 CCTTTTTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTCTTTTCTCCTC
Found at i:83312170 original size:26 final size:26
Alignment explanation
Indices: 83312134--83312187 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
83312124 TCTGTGGCAG
83312134 AGTATGAACACAAATTTGTAAGACTC
1 AGTATGAACACAAATTTGTAAGACTC
83312160 AGTATGAACACAAATTTGTAAGACTC
1 AGTATGAACACAAATTTGTAAGACTC
83312186 AG
1 AG
83312188 CAAGTATGCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.26
Consensus pattern (26 bp):
AGTATGAACACAAATTTGTAAGACTC
Found at i:83331840 original size:28 final size:27
Alignment explanation
Indices: 83331784--83331874 Score: 103
Period size: 28 Copynumber: 3.3 Consensus size: 27
83331774 CAGCATGGCT
** *
83331784 ACCAGAACAGAT-ATTGTGATAGAGTC
1 ACCAGAACAGATAATTGTGGCAGAGCC
*
83331810 ACCAGATACAGATAATTGTGGCAGGGCC
1 ACCAGA-ACAGATAATTGTGGCAGAGCC
*
83331838 ACCAGAAACAGATATTTGTGGCAGAGCC
1 ACCAG-AACAGATAATTGTGGCAGAGCC
*
83331866 ACCAAAACA
1 ACCAGAACA
83331875 CTTCCTCCAT
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
26 6 0.11
27 10 0.18
28 38 0.69
29 1 0.02
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (27 bp):
ACCAGAACAGATAATTGTGGCAGAGCC
Found at i:83332881 original size:18 final size:18
Alignment explanation
Indices: 83332825--83332881 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
83332815 GACTATAGAG
83332825 GAAAAGAAGAAGAAGAGAA
1 GAAAAGAAGAAG-AGAGAA
* * *
83332844 -AATAGATGAAGAGAGGA
1 GAAAAGAAGAAGAGAGAA
*
83332861 GAAAAGAAGAAGAGAAAA
1 GAAAAGAAGAAGAGAGAA
83332879 GAA
1 GAA
83332882 TTGTCAAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
17 5 0.17
18 25 0.83
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.04
Consensus pattern (18 bp):
GAAAAGAAGAAGAGAGAA
Found at i:83334494 original size:51 final size:49
Alignment explanation
Indices: 83334426--83334562 Score: 166
Period size: 49 Copynumber: 2.8 Consensus size: 49
83334416 TGTGAGGTCG
* *
83334426 CATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGAAAACTGTGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAA-T-TGATCA
* * * ** *
83334477 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGACTATTGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAATTGATCA
**
83334526 CATGTGTAGTACTAAAAGCAGGCTACTATGCGTACCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
83334563 AGCTAACTTC
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 37 0.51
50 1 0.01
51 35 0.48
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAATTGATCA
Found at i:83354379 original size:21 final size:22
Alignment explanation
Indices: 83354340--83354380 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
83354330 GTTGAATTGT
83354340 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
*
83354362 CACATGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
83354381 GTGTTAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:83355873 original size:43 final size:43
Alignment explanation
Indices: 83355749--83355908 Score: 200
Period size: 43 Copynumber: 3.7 Consensus size: 43
83355739 ATATGTGCTA
*
83355749 TCGTGTAAGACCACGTCTGGGACATTGGCATCGACT-TATGATT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGATT
* **
83355792 TACGTGTAAGACCATGTCTGGGATGTTGGCATCG-TATTTGATT
1 T-CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATT
*
83355835 TCGTGTAAGACC-CTGTCTGGGACAATGGCATCGATATTTGATT
1 TCGTGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATT
* * *
83355878 ACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TCGTGTAAGACCACGTCTGGGACATTGGCAT
83355909 TGTACGAGCT
Statistics
Matches: 100, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
42 28 0.28
43 42 0.42
44 30 0.30
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (43 bp):
TCGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATT
Found at i:83360477 original size:21 final size:22
Alignment explanation
Indices: 83360448--83360490 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
83360438 GTATACTTTG
83360448 AAAAATAT-CA-ATTTTTTTAT
1 AAAAATATCCATATTTTTTTAT
83360468 AAAAACTATCCATATTTTTTTAT
1 AAAAA-TATCCATATTTTTTTAT
83360491 TATTTATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 3 0.15
22 2 0.10
23 10 0.50
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (22 bp):
AAAAATATCCATATTTTTTTAT
Found at i:83363206 original size:47 final size:47
Alignment explanation
Indices: 83363137--83363357 Score: 183
Period size: 47 Copynumber: 4.7 Consensus size: 47
83363127 GGGGTAAGGG
* * *
83363137 GTCGATGCCGTGTCCCAGACATGGTCTTACACTGGCTTATATCTC-AA
1 GTCGAAGCCATGTCCCAGACATGGTCTTACACTGAC-TATATCTCGAA
* *
83363184 GTCGAAGCCATGTCCCAGACATGGTCTTACACTGACTATCGTCTCGTA
1 GTCGAAGCCATGTCCCAGACATGGTCTTACACTGACTAT-ATCTCGAA
* * *
83363232 G-CCAA-CGCATGTCCCAGACAT-GTCTTACACTGACTTATGTCATCGAG
1 GTCGAAGC-CATGTCCCAGACATGGTCTTACACTGAC-TATATC-TCGAA
* *
83363279 GCCGATA--CATGTCCCAGACAT-GTCTTACACTAGAACT-CATCTC-AA
1 GTCGA-AGCCATGTCCCAGACATGGTCTTACACT-G-ACTATATCTCGAA
*
83363324 -TGCTAATGCCATGTCCCAGACATGGTCTTACACT
1 GT-CGAA-GCCATGTCCCAGACATGGTCTTACACT
83363358 AGCTCTCACA
Statistics
Matches: 146, Mismatches: 14, Indels: 27
0.78 0.07 0.14
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 22 0.15
47 101 0.69
48 16 0.11
49 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
GTCGAAGCCATGTCCCAGACATGGTCTTACACTGACTATATCTCGAA
Found at i:83363337 original size:94 final size:94
Alignment explanation
Indices: 83363141--83363357 Score: 241
Period size: 94 Copynumber: 2.3 Consensus size: 94
83363131 TAAGGGGTCG
* * *
83363141 ATGCCGTGTCCCAGACATGGTCTTACACTGGCTTATATCTCAAGTCGAAGCCATGTCCCAGACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTTATATCTCAAGCCGAA-CCATGTCCCAGACAT
**
83363206 GGTCTTACACTGACTATCGTCTCGTAGCCA
65 GGTCTTACACTGACTATCGTCTAATAGCCA
* * *
83363236 ACG-CATGTCCCAGACAT-GTCTTACACTGACTTATGTCATCGAGGCCGATA-CATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTTATATC-TC-AAGCCGA-ACCATGTCCCAGAC
*
83363298 AT-GTCTTACACTAGAACTCATC-TC-AAT-GCTA
63 ATGGTCTTACACT-G-ACT-ATCGTCTAATAGCCA
83363329 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
83363358 AGCTCTCACA
Statistics
Matches: 104, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
93 33 0.32
94 45 0.43
95 22 0.21
96 4 0.04
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (94 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACTTATATCTCAAGCCGAACCATGTCCCAGACATG
GTCTTACACTGACTATCGTCTAATAGCCA
Found at i:83371621 original size:28 final size:28
Alignment explanation
Indices: 83371581--83371635 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
83371571 TACTGCTGGG
83371581 TATTTATAAGGTCTTATTTTGACTACCA
1 TATTTATAAGGTCTTATTTTGACTACCA
83371609 TATTTATAAGGTCTTATTTTGACTACC
1 TATTTATAAGGTCTTATTTTGACTACC
83371636 TTACTCTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.27, C:0.15, G:0.11, T:0.47
Consensus pattern (28 bp):
TATTTATAAGGTCTTATTTTGACTACCA
Found at i:83373020 original size:21 final size:21
Alignment explanation
Indices: 83372996--83373060 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
83372986 ACCAGAAACC
83372996 CATAAGGGTTGAACGAAAGCT
1 CATAAGGGTTGAACGAAAGCT
* * *
83373017 CATAAGAGCTGAACAGAAA-CC
1 CATAAGGGTTGAAC-GAAAGCT
*
83373038 CATAAGGGTTAAAC-AGAAGCT
1 CATAAGGGTTGAACGA-AAGCT
83373059 CA
1 CA
83373061 ATAAAGCCGA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
19 1 0.03
20 2 0.06
21 27 0.79
22 4 0.12
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.15
Consensus pattern (21 bp):
CATAAGGGTTGAACGAAAGCT
Found at i:83373025 original size:42 final size:42
Alignment explanation
Indices: 83372968--83373118 Score: 148
Period size: 42 Copynumber: 3.6 Consensus size: 42
83372958 GAGGCTGAAT
* * *
83372968 AGAAGCTTATGAGAGCT-AACCAGAAACCCATAAGGGTTGAAC
1 AGAAGCTCATAAGAGCTGAA-CAGAAACCCATAAGGGTTAAAC
83373010 -GAAAGCTCATAAGAGCTGAACAGAAACCCATAAGGGTTAAAC
1 AG-AAGCTCATAAGAGCTGAACAGAAACCCATAAGGGTTAAAC
* * * * *
83373052 AGAAGCTCAATAA-AGCCGAATAGAAACTCATATGAGTTAAAC
1 AGAAGCTC-ATAAGAGCTGAACAGAAACCCATAAGGGTTAAAC
* * *
83373094 AGAAGCTCGTGAGAGCTAAAC-GAAA
1 AGAAGCTCATAAGAGCTGAACAGAAA
83373119 AGTAAGCACG
Statistics
Matches: 91, Mismatches: 13, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
41 7 0.08
42 77 0.85
43 7 0.08
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.16
Consensus pattern (42 bp):
AGAAGCTCATAAGAGCTGAACAGAAACCCATAAGGGTTAAAC
Found at i:83374932 original size:39 final size:40
Alignment explanation
Indices: 83374832--83375016 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 40
83374822 TTGAATGATG
* * *
83374832 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
83374871 GTCCGGACTGAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
83374912 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
83374951 TCCGGGTTAAGTCCCGAAGGTAATTGTGCTAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
83374990 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
83375017 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 36 0.30
40 73 0.61
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:83382840 original size:79 final size:81
Alignment explanation
Indices: 83382704--83382888 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
83382694 TTGAATGATG
** *
83382704 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATGTCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
83382768 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
83382783 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
83382845 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
83382863 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
83382889 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:83382902 original size:40 final size:40
Alignment explanation
Indices: 83382705--83382888 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
83382695 TGAATGATGT
* * * **
83382705 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
83382745 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
83382785 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
83382823 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
83382864 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
83382889 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:83382910 original size:79 final size:79
Alignment explanation
Indices: 83382757--83382921 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
83382747 GGACTAAGAT
* * **
83382757 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
83382822 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
83382836 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
83382899 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
83382915 CCGAAGG
1 CCGAAGG
83382922 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:83388298 original size:22 final size:22
Alignment explanation
Indices: 83388273--83388315 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
83388263 TTTCATTGTT
83388273 TTGCTA-TCATTTCGTTATTATA
1 TTGCTACT-ATTTCGTTATTATA
*
83388295 TTGCTACTATTTTGTTATTAT
1 TTGCTACTATTTCGTTATTAT
83388316 TATTTGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (22 bp):
TTGCTACTATTTCGTTATTATA
Found at i:83395057 original size:45 final size:44
Alignment explanation
Indices: 83394949--83395344 Score: 219
Period size: 44 Copynumber: 8.8 Consensus size: 44
83394939 CTACCATGGT
** * * ** *
83394949 GAATCTTATCTCCCTGAAGTTATAGTGGAGTAGATCGAAGCCAT
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* * *
83394993 TAACCTTATCTCCATGAAGTTGCAGTGGAGCAGATTGAAGATAGC
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C
* * *
83395038 GAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAATTAC
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G--A-AGA-TAC
* ** * * * * *
83395089 AAATCAAATCCCCCTAAAGTAGTAGTAGAGCAGATTGAA-ATTA-
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TAC
* * * ** *
83395132 -TATCTTATCTCCCTGAAGTTACAGTGGA-CTAGATCGGGGATAGT
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGC-AGATTGAAGATA-C
** * * * * * *
83395176 GAATCTTATCTCTTTGAAGCTGCCGTAGAGTAGATTAAAG-TAA
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* * *
83395219 TAAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAC
1 GAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
* * *
83395264 -AAGTCTTATCTCCCTGAAGTTACAGTGGAGCACATTGAAGATAGA
1 GAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C
* * * *
83395309 GAATCTTATTTCCCTGAAGTCGTAGTGGAACAGATT
1 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
83395345 AAAGCTACAA
Statistics
Matches: 262, Mismatches: 72, Indels: 35
0.71 0.20 0.09
Matches are distributed among these distances:
41 1 0.00
42 26 0.10
43 3 0.01
44 108 0.41
45 87 0.33
46 3 0.01
48 2 0.01
50 1 0.00
51 29 0.11
52 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (44 bp):
GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC
Found at i:83406867 original size:49 final size:49
Alignment explanation
Indices: 83406785--83406970 Score: 230
Period size: 49 Copynumber: 3.8 Consensus size: 49
83406775 TGAGGTCACG
* *
83406785 TGTGTAGTACTAAGTGCAGGCTCCTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGACTGTTGGTCGCA
* * * * * * *
83406834 TGTGTAGTACTAAGTCCAGACTACTATGCGTACCCGAAAACTG-TGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTA-CC--AGACTGTTGGTCGCA
*
83406885 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGACTGTTGGTCGCA
* *
83406934 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGA
83406971 TAGCTTCGGC
Statistics
Matches: 113, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
48 5 0.04
49 66 0.58
50 4 0.04
51 33 0.29
52 5 0.04
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGACTGTTGGTCGCA
Found at i:83406958 original size:100 final size:100
Alignment explanation
Indices: 83406780--83406967 Score: 340
Period size: 100 Copynumber: 1.9 Consensus size: 100
83406770 TATGGTGAGG
*
83406780 TCACGTGTGTAGTACTAAGTGCAGGCTCCTACGTGTACCAGACTGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCATGTGTAGTACT
83406845 AAGTCCAGACTACTATGCGTACCCGAAAACTGTGA
66 AAGTCCAGACTACTATGCGTACCCGAAAACTGTGA
83406880 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCATGTGTAGTACT
** *
83406945 AAGTGTAGGCTACTATGCGTACC
66 AAGTCCAGACTACTATGCGTACC
83406968 AGATAGCTTC
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 84 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCATGTGTAGTACT
AAGTCCAGACTACTATGCGTACCCGAAAACTGTGA
Found at i:83422330 original size:27 final size:27
Alignment explanation
Indices: 83422299--83422477 Score: 218
Period size: 27 Copynumber: 6.6 Consensus size: 27
83422289 TTAGTTTACC
*
83422299 AAATTACCAAAATACCCCTATTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
83422326 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
83422353 AAATTACCAAAA-AGCCCCTAGTTTGTA
1 AAATTACCAAAATA-CCCCTAGTTTGTA
83422380 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
83422407 AAATTATCAAAATACCTCTGGTTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
*
83422434 AAATTACCAAAATACCCCT-GATTTGTG
1 AAATTACCAAAATACCCCTAG-TTTGTA
**
83422461 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
83422478 TCAACCTGTA
Statistics
Matches: 132, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.02
27 129 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:83422364 original size:54 final size:54
Alignment explanation
Indices: 83422299--83422531 Score: 222
Period size: 54 Copynumber: 4.3 Consensus size: 54
83422289 TTAGTTTACC
* * * * *
83422299 AAATTACCAAAATACCCCTATTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTA
83422353 AAATTACCAAAA-AGCCCCTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATA-CCCCTAGTTTGTAAAATTACCAAAATACCCCTGA-TTTGTA
* * * * *
83422407 AAATTATCAAAATACCTCTGGTTTGTGAAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTA
** *** *** *
83422461 AAATTACTGAAATA-CCCTCAACCTGTAAAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCT-GATTTGTA
*
83422515 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
83422532 TTAATTTACA
Statistics
Matches: 145, Mismatches: 27, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
53 8 0.06
54 133 0.92
55 4 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTA
Found at i:83422429 original size:81 final size:81
Alignment explanation
Indices: 83422299--83422531 Score: 242
Period size: 81 Copynumber: 2.9 Consensus size: 81
83422289 TTAGTTTACC
*
83422299 AAATTACCAAAATACCCCTATTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
83422364 A-AGCCCCT-AGTTTGTA
66 ATA-CCCCTGA-TTTGTA
* *
83422380 AAATTACCAAAATACCCCTAGTTTGTAAAATTA-TCAAAATA-CCTCTGGTTTGTGAAATTACCA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACT-AAAATACCCT-TGGTTTATAAAATTACCA
*
83422443 AAATACCCCTGATTTGTG
64 AAATACCCCTGATTTGTA
** *** * * * ** *
83422461 AAATTACTGAAATA-CCCTCAACCTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAA
1 AAATTACCAAAATACCCCT-AGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAA
*
83422525 AGTACCC
65 AATACCC
83422532 TTAATTTACA
Statistics
Matches: 130, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
80 8 0.06
81 116 0.89
82 6 0.05
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
ATACCCCTGATTTGTA
Found at i:83422530 original size:27 final size:27
Alignment explanation
Indices: 83422299--83422532 Score: 183
Period size: 27 Copynumber: 8.7 Consensus size: 27
83422289 TTAGTTTACC
*
83422299 AAATTACCAAAATACCC-CTATTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * * *
83422326 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
83422353 AAATTACCAAAA-AGCCC-CTAGTTTGTA
1 AAATTACCAAAATA-CCCTCGA-TTTGTA
*
83422380 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * *
83422407 AAATTATCAAAATA-CCTCTGGTTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
*
83422434 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
** * **
83422461 AAATTACTGAAATACCCTCAACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
83422488 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
83422515 AAATTACCAAAGTACCCT
1 AAATTACCAAAATACCCT
83422533 TAATTTACAG
Statistics
Matches: 170, Mismatches: 29, Indels: 16
0.79 0.13 0.07
Matches are distributed among these distances:
26 3 0.02
27 163 0.96
28 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:83422584 original size:27 final size:27
Alignment explanation
Indices: 83422461--83422586 Score: 76
Period size: 27 Copynumber: 4.7 Consensus size: 27
83422451 CTGATTTGTG
* **
83422461 AAATTACTGAAATACCCTCAACCTGTA
1 AAATTACTGAAATACCCTCAACTTACA
* * **
83422488 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCAACTTACA
* * *
83422515 AAATTAC-CAAAGTACCCTTAATTTACA
1 AAATTACTGAAA-TACCCTCAACTTACA
* *** * *
83422542 GAATTA-TCGTTTTACCCTCGATTTACA
1 AAATTACT-GAAATACCCTCAACTTACA
83422569 AAATTACTGAAATACCCT
1 AAATTACTGAAATACCCT
83422587 TGTAGGGTAG
Statistics
Matches: 74, Mismatches: 21, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
26 3 0.04
27 70 0.95
28 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAACTTACA
Found at i:83422603 original size:27 final size:27
Alignment explanation
Indices: 83422570--83422773 Score: 225
Period size: 27 Copynumber: 7.6 Consensus size: 27
83422560 CGATTTACAA
*
83422570 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
83422597 AAATACTGAAATACCCCTGTAGGAT-G
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
83422623 AAATTACCGCAATACCCCTGTAGGGTAG
1 -AATTACTGAAATACCCCTGTAGGGTAG
* *
83422651 AATTA-TCGCAATACCCCTGTAGAGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
83422678 AATTA-TCGAAATATCCCTATAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
83422705 AATTACCGAAATACCCCTGTAGGGTAC
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
83422732 AATTACCGAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
83422759 AATTACCGAGATACC
1 AATTACTGAAATACC
83422774 TTGTGGGGAA
Statistics
Matches: 153, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 151 0.99
28 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:83422762 original size:81 final size:81
Alignment explanation
Indices: 83422570--83422773 Score: 250
Period size: 81 Copynumber: 2.5 Consensus size: 81
83422560 CGATTTACAA
* * * * *
83422570 AATTACTGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGATGAAATTACCGCAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGATGAAATTACCGAAA
*
83422635 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAC
* * * * *
83422651 AATTATCGCAATACCCCTGTAGAGTAGAATTA-TCGAAATATCCCTATAGGGT-AGAATTACCGA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACT-GAAATACCCCTATAGGATGA-AATTACCGA
83422714 AATACCCCTGTAGGGTAC
64 AATACCCCTGTAGGGTAC
* * *
83422732 AATTACCGAAATACCCCTGTAGGGTGGAATTACCGAGATACC
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACC
83422774 TTGTGGGGAA
Statistics
Matches: 102, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
80 2 0.02
81 100 0.98
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (81 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGATGAAATTACCGAAA
TACCCCTGTAGGGTAC
Found at i:83423270 original size:22 final size:22
Alignment explanation
Indices: 83423219--83423282 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
83423209 TAAAGCCTTT
* *
83423219 TGATTATGGCTTTGTGTCAACC
1 TGATTATGGCTCTGTGCCAACC
*
83423241 T-ACATATGGCTCTGTGCCAACC
1 TGA-TTATGGCTCTGTGCCAACC
*
83423263 TGATTATGGCTGTGTGCCAA
1 TGATTATGGCTCTGTGCCAA
83423283 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.34
Consensus pattern (22 bp):
TGATTATGGCTCTGTGCCAACC
Found at i:83423471 original size:27 final size:27
Alignment explanation
Indices: 83423441--83423542 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
83423431 ATTCTGTTAA
* *
83423441 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
83423468 GTGGCTATGCCACAAATATATG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
83423495 GTGGCTCTGCGACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
83423522 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
83423543 AAAACTGAGC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.11
27 50 0.79
28 6 0.10
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:83423717 original size:6 final size:6
Alignment explanation
Indices: 83423679--83423792 Score: 92
Period size: 6 Copynumber: 18.3 Consensus size: 6
83423669 TTGCATCCAC
* * *
83423679 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
83423729 -TTACCTG ATTCTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
83423779 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
83423793 AATGTTTCTT
Statistics
Matches: 88, Mismatches: 8, Indels: 24
0.73 0.07 0.20
Matches are distributed among these distances:
5 7 0.08
6 62 0.70
7 14 0.16
8 5 0.06
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:83423725 original size:31 final size:31
Alignment explanation
Indices: 83423679--83423750 Score: 126
Period size: 31 Copynumber: 2.3 Consensus size: 31
83423669 TTGCATCCAC
83423679 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
83423711 ATTCTGATTTTGATTCTGTTACCTGATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
83423742 ATTCTGATT
1 ATTCTGATT
83423751 CTGTTACCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
31 32 0.82
32 7 0.18
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:83423736 original size:25 final size:25
Alignment explanation
Indices: 83423708--83423778 Score: 124
Period size: 25 Copynumber: 2.8 Consensus size: 25
83423698 TTACCTGATA
*
83423708 CTGATTCTGATTTTGATTCTGTTAC
1 CTGATTCTGATTCTGATTCTGTTAC
83423733 CTGATTCTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGATTCTGTTAC
*
83423758 CTAATTCTGATTCTGATTCTG
1 CTGATTCTGATTCTGATTCTG
83423779 ATTCTAGTTC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.49
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTTAC
Found at i:83423768 original size:31 final size:29
Alignment explanation
Indices: 83423679--83423783 Score: 119
Period size: 31 Copynumber: 3.6 Consensus size: 29
83423669 TTGCATCCAC
*
83423679 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCT-AT-CTG
*
83423711 ATTCTGATTTTGATTCTGTTA-C---CTG
1 ATTCTGATTCTGATTCTGTTACCTATCTG
83423736 ATTCTGATTCTGATTCTGTTACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCT-A-TCTG
83423767 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
83423784 AGTTCTGATA
Statistics
Matches: 66, Mismatches: 1, Indels: 13
0.82 0.01 0.16
Matches are distributed among these distances:
25 23 0.35
26 1 0.02
30 1 0.02
31 34 0.52
32 7 0.11
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.50
Consensus pattern (29 bp):
ATTCTGATTCTGATTCTGTTACCTATCTG
Found at i:83425746 original size:47 final size:47
Alignment explanation
Indices: 83425683--83426181 Score: 741
Period size: 47 Copynumber: 10.6 Consensus size: 47
83425673 CCCTTCGGGA
* * * * *
83425683 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83425730 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* ** * *
83425777 CTTATCTCATATATGTA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* * * *
83425824 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* * *
83425871 CTTATCACATATATATACATTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83425920 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83425967 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83426014 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83426061 CTTATCACATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83426108 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83426155 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
83426182 TATTCAAATA
Statistics
Matches: 424, Mismatches: 24, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 379 0.89
49 43 0.10
50 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:83427573 original size:85 final size:85
Alignment explanation
Indices: 83427444--83427622 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 85
83427434 TATTTTATTG
*
83427444 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
83427509 TAGCCATAACATATTGTCCA
66 TAGCCATAACATATTGTCCA
*
83427529 CCCATGCTTTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
*
83427594 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATATTGTCCA
83427614 CCCATGCTC
1 CCCATGCTC
83427623 ATGGCCGGCC
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 90 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATATTGTCCA
Found at i:83428934 original size:40 final size:40
Alignment explanation
Indices: 83428890--83429236 Score: 536
Period size: 40 Copynumber: 8.7 Consensus size: 40
83428880 CCAGCATGAT
* * * * *
83428890 TGCTCTTCGGGACCTAGCTCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* ** * *
83428930 TGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83428970 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
83429010 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83429050 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83429090 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
83429130 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83429170 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
83429210 TGCTCTTCGGG-CTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
83429237 GTCGAGACCT
Statistics
Matches: 288, Mismatches: 19, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
38 4 0.01
39 12 0.04
40 272 0.94
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:83429359 original size:38 final size:38
Alignment explanation
Indices: 83429290--83429364 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
83429280 GAATTTTAAT
*
83429290 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
83429328 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
83429365 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:83431908 original size:47 final size:47
Alignment explanation
Indices: 83431792--83432278 Score: 696
Period size: 47 Copynumber: 10.6 Consensus size: 47
83431782 CCCTTCGGGA
* * * *
83431792 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83431838 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
83431885 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* *
83431932 CTTATCACACATACACA-TGTTCACA-T--TC-CAT------TT-GGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
83431968 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
83432017 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83432064 CTTATCACATATATACACTTTCATATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83432111 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83432158 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83432205 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83432252 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
83432279 TATTCAAATA
Statistics
Matches: 407, Mismatches: 18, Indels: 31
0.89 0.04 0.07
Matches are distributed among these distances:
36 12 0.03
37 2 0.00
38 12 0.03
39 2 0.00
41 2 0.00
42 3 0.01
43 3 0.01
44 2 0.00
46 42 0.10
47 313 0.77
48 2 0.00
49 12 0.03
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:83433668 original size:85 final size:84
Alignment explanation
Indices: 83433539--83433716 Score: 320
Period size: 85 Copynumber: 2.1 Consensus size: 84
83433529 TATTTTATTG
* *
83433539 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATCCACTACCCCAACATGTTTATGACATGTTTT
83433604 GAGCCATAACATCTTGTCCA
66 GAGCCAT-ACATCTTGTCCA
83433624 CCCATGCTCTTTATTTTATTAATCCTTACATAATCCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATCCACTACCCCAACATGTTTATGACATGTTTT
*
83433689 TAGCCATACATCTTGTCCA
66 GAGCCATACATCTTGTCCA
83433708 CCCATGCTC
1 CCCATGCTC
83433717 ATGGCCGGCC
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
84 21 0.23
85 69 0.77
ACGTcount: A:0.26, C:0.29, G:0.08, T:0.37
Consensus pattern (84 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATCCACTACCCCAACATGTTTATGACATGTTTT
GAGCCATACATCTTGTCCA
Found at i:83434754 original size:20 final size:20
Alignment explanation
Indices: 83434729--83434768 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
83434719 ATGAACACGC
83434729 AGTTGGTGTTATCTGATTAT
1 AGTTGGTGTTATCTGATTAT
83434749 AGTTGGTGTTATCTGATTAT
1 AGTTGGTGTTATCTGATTAT
83434769 GGTTCGGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.05, G:0.25, T:0.50
Consensus pattern (20 bp):
AGTTGGTGTTATCTGATTAT
Done.