Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 246 of 373
Found at i:83748285 original size:18 final size:18
Alignment explanation
Indices: 83748239--83748303 Score: 76
Period size: 18 Copynumber: 3.6 Consensus size: 18
83748229 TGGCCCACTA
* * *
83748239 CAGTAACAGTAAACATTA
1 CAGTAACAGTAATCAATG
*
83748257 CATTAACAGTAATCAATG
1 CAGTAACAGTAATCAATG
* *
83748275 CAGTAAGAGTAATCAGTG
1 CAGTAACAGTAATCAATG
83748293 CAGTAACAGTA
1 CAGTAACAGTA
83748304 TACAAATCCT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.45, C:0.15, G:0.17, T:0.23
Consensus pattern (18 bp):
CAGTAACAGTAATCAATG
Found at i:83751685 original size:21 final size:21
Alignment explanation
Indices: 83751661--83751707 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
83751651 TACACAGCCG
83751661 TGTGGTTGAGAGACACG-CCT
1 TGTGGTTGAGAGACACGACCT
* * *
83751681 ATGTGATTGGGATACACGACCT
1 -TGTGGTTGAGAGACACGACCT
83751703 TGTGG
1 TGTGG
83751708 CTAGACCGTG
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.21, C:0.17, G:0.34, T:0.28
Consensus pattern (21 bp):
TGTGGTTGAGAGACACGACCT
Found at i:83752944 original size:52 final size:49
Alignment explanation
Indices: 83752866--83752970 Score: 167
Period size: 52 Copynumber: 2.1 Consensus size: 49
83752856 CGAAGCGTTC
83752866 AAAACATTTTATATTGTTGATCTAGAAAAACTTACTTAGTTTTTTTTTTA-AA
1 AAAACATTTTATATTGTTGATCTAGAAAAAC-T--TT-GTTTTTTTTTTATAA
83752918 AAAACATTTTATATTGTTGATCTAGAAAAACTTTGTTTTTTTTTTATAA
1 AAAACATTTTATATTGTTGATCTAGAAAAACTTTGTTTTTTTTTTATAA
83752967 AAAA
1 AAAA
83752971 GAAATATTCT
Statistics
Matches: 52, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
48 12 0.23
49 8 0.15
51 1 0.02
52 31 0.60
ACGTcount: A:0.38, C:0.07, G:0.08, T:0.48
Consensus pattern (49 bp):
AAAACATTTTATATTGTTGATCTAGAAAAACTTTGTTTTTTTTTTATAA
Found at i:83752946 original size:26 final size:26
Alignment explanation
Indices: 83752866--83752948 Score: 82
Period size: 26 Copynumber: 3.2 Consensus size: 26
83752856 CGAAGCGTTC
83752866 AAAACATTTTATATTGTTGATCTAGA
1 AAAACATTTTATATTGTTGATCTAGA
** * *
83752892 AAAAC-TTACTTAGT-TT-TTTTTTTAAA
1 AAAACATT--TTA-TATTGTTGATCTAGA
83752918 AAAACATTTTATATTGTTGATCTAGA
1 AAAACATTTTATATTGTTGATCTAGA
83752944 AAAAC
1 AAAAC
83752949 TTTGTTTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 12
0.68 0.13 0.19
Matches are distributed among these distances:
24 1 0.02
25 7 0.16
26 27 0.63
27 7 0.16
28 1 0.02
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.43
Consensus pattern (26 bp):
AAAACATTTTATATTGTTGATCTAGA
Found at i:83753809 original size:27 final size:27
Alignment explanation
Indices: 83753779--83753885 Score: 137
Period size: 27 Copynumber: 3.9 Consensus size: 27
83753769 GGCTACTAGA
* *
83753779 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
*
83753806 ACAGATAATCGTGGCAGAGCCACCA-AA
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
83753833 ACAGATATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
83753861 -CAGATAATTGTGGCATAGCCACCAG
1 ACAGATAA-TGTGGCAGAGCCACCAG
83753886 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
26 1 0.01
27 54 0.76
28 16 0.23
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.17
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:83753837 original size:54 final size:54
Alignment explanation
Indices: 83753778--83753884 Score: 162
Period size: 54 Copynumber: 2.0 Consensus size: 54
83753768 TGGCTACTAG
*
83753778 AACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACCAA
1 AACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCACCAA
* * *
83753832 AACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCA
1 AACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCACCA
83753885 GGACGCTTCC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 30 0.62
55 18 0.38
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (54 bp):
AACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCACCAA
Found at i:83754301 original size:8 final size:8
Alignment explanation
Indices: 83754272--83754304 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
83754262 CCTCAAAATG
83754272 TCGGCTTT
1 TCGGCTTT
83754280 TCGGCATTT
1 TCGGC-TTT
83754289 T-GGCTTT
1 TCGGCTTT
83754296 TCGGCTTT
1 TCGGCTTT
83754304 T
1 T
83754305 GCCGATCTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 4 0.17
8 15 0.65
9 4 0.17
ACGTcount: A:0.03, C:0.21, G:0.24, T:0.52
Consensus pattern (8 bp):
TCGGCTTT
Found at i:83761748 original size:43 final size:43
Alignment explanation
Indices: 83761682--83761797 Score: 171
Period size: 43 Copynumber: 2.7 Consensus size: 43
83761672 CCAAGATGTC
* * *
83761682 ATTACATGTAAGACCATGCTTGAGACGTTGGCATTGAATTGTG
1 ATTACATGTAAGACCATGTTTGAGACATTGACATTGAATTGTG
*
83761725 ATTACATGTAAGACCATGTTTGAGACATTGACATTGTATTGTG
1 ATTACATGTAAGACCATGTTTGAGACATTGACATTGAATTGTG
*
83761768 ATTACGTGTAAGACCATGTTTTG-GACATTG
1 ATTACATGTAAGACCATG-TTTGAGACATTG
83761798 GTATCGTTAT
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
43 63 0.94
44 4 0.06
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.35
Consensus pattern (43 bp):
ATTACATGTAAGACCATGTTTGAGACATTGACATTGAATTGTG
Found at i:83761865 original size:43 final size:44
Alignment explanation
Indices: 83761682--83761869 Score: 156
Period size: 43 Copynumber: 4.4 Consensus size: 44
83761672 CCAAGATGTC
* * *
83761682 ATTACATGTAAGACCATG-CTTGAGACGTTGGCATTGA-ATTGTG
1 ATTACATGTAAGACCATGTC-TGAGACATTGGCATCGATATTGAG
* * * *
83761725 ATTACATGTAAGACCATGTTTGAGACATTGACATTG-TATTGTG
1 ATTACATGTAAGACCATGTCTGAGACATTGGCATCGATATTGAG
* * * *
83761768 ATTACGTGTAAGACCATGTTTTG-GACATTGGTATCGTTA-T-ATG
1 ATTACATGTAAGACCATG-TCTGAGACATTGGCATCGATATTGA-G
* * *
83761811 ATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATA-TGAG
1 ATTACATGTAAGACCATGTCTGAGACATTGGCATCGATATTGAG
* *
83761854 TTTACACGTAAGACCA
1 ATTACATGTAAGACCA
83761870 GATTTGGGAT
Statistics
Matches: 122, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
42 3 0.02
43 112 0.92
44 7 0.06
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (44 bp):
ATTACATGTAAGACCATGTCTGAGACATTGGCATCGATATTGAG
Found at i:83762836 original size:19 final size:20
Alignment explanation
Indices: 83762798--83762836 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
83762788 GGCTTATATG
*
83762798 TTGGCTAGATAGTAATTGAT
1 TTGGCTAGATAGTAAATGAT
*
83762818 TTGGCTA-ATTGTAAATGAT
1 TTGGCTAGATAGTAAATGAT
83762837 ATGTCATGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.31, C:0.05, G:0.23, T:0.41
Consensus pattern (20 bp):
TTGGCTAGATAGTAAATGAT
Found at i:83763731 original size:86 final size:85
Alignment explanation
Indices: 83763586--83763765 Score: 324
Period size: 86 Copynumber: 2.1 Consensus size: 85
83763576 GGCCGGCCAT
* *
83763586 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCAAAAAACATGTCATAAACATGTCGGGGTAGTGCATTAT
83763651 GTAAGGATTAATAAAAATAAA
66 GTAAGGATTAAT-AAAATAAA
83763672 GAGCATGGGTGGACAAGATGTTATGGCAAAAAACATGTCATAAACATGTCGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCAAAAAACATGTCATAAACATGTCGGGGTAGTGCATTAT
83763737 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
83763757 GGGCATGGG
1 GAGCATGGG
83763766 CAATAAAATA
Statistics
Matches: 91, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
85 16 0.18
86 75 0.82
ACGTcount: A:0.38, C:0.09, G:0.28, T:0.25
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCAAAAAACATGTCATAAACATGTCGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:83765114 original size:49 final size:47
Alignment explanation
Indices: 83765035--83765473 Score: 565
Period size: 47 Copynumber: 9.6 Consensus size: 47
83765025 TATTTGAATA
*
83765035 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
83765082 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
83765131 AATGTGGAAGTGTATATATATGTGATAAGGCCTAATGGCC--------G
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
83765172 -ATGTGAAAGTGTATATATGTGATAAGG-C---T----AATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
83765210 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
83765257 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
83765306 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
83765353 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
83765400 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
83765447 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
83765474 TCCCGAAGAG
Statistics
Matches: 359, Mismatches: 10, Indels: 46
0.87 0.02 0.11
Matches are distributed among these distances:
34 1 0.00
37 1 0.00
38 17 0.05
39 27 0.08
40 11 0.03
41 1 0.00
43 1 0.00
46 1 0.00
47 180 0.50
49 118 0.33
50 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:83765398 original size:22 final size:22
Alignment explanation
Indices: 83765371--83765445 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
83765361 CATGTGTATG
83765371 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
83765393 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
83765418 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
83765440 TGTGAT
1 TGTGAT
83765446 GGATGTGGAA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 14 0.37
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:83769403 original size:27 final size:26
Alignment explanation
Indices: 83769363--83769467 Score: 129
Period size: 27 Copynumber: 3.9 Consensus size: 26
83769353 AGGAAGCATA
*
83769363 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
**
83769390 CTGGTGGCTCTGCCACATATATCTTTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
83769417 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* *
83769445 CTGGTGACTCTGTCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
83769468 ATTCTGGCAG
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 2 0.03
27 49 0.72
28 17 0.25
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:83769467 original size:54 final size:54
Alignment explanation
Indices: 83769363--83769474 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
83769353 AGGAAGCATA
* *
83769363 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTTTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
* * *
83769417 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTATT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTATT
83769471 CTGG
1 CTGG
83769475 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
Found at i:83777219 original size:27 final size:26
Alignment explanation
Indices: 83777179--83777291 Score: 145
Period size: 27 Copynumber: 4.2 Consensus size: 26
83777169 AGGAAGCGTC
*
83777179 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
83777206 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
83777233 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
83777261 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
83777287 CTGGT
1 CTGGT
83777292 AGCCATGCTG
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
26 8 0.10
27 52 0.68
28 17 0.22
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:83777283 original size:54 final size:54
Alignment explanation
Indices: 83777179--83777291 Score: 174
Period size: 54 Copynumber: 2.1 Consensus size: 54
83777169 AGGAAGCGTC
*
83777179 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
83777233 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
83777287 CTGGT
1 CTGGT
83777292 AGCCATGCTG
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:83784928 original size:50 final size:49
Alignment explanation
Indices: 83784814--83785046 Score: 178
Period size: 50 Copynumber: 4.7 Consensus size: 49
83784804 CTGGTACGCA
* * * * * *
83784814 TAGTAGCATGCATTTAGTACTACCCATGTGACCAACAATCTAGTACACG
1 TAGTAGCCTGCACTTATTACTACACACGTGACCAACAATCTAATACACG
*
83784863 TAGTAGCCTGCACTTATTACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTATTACTACACACGTGACC-AACAATCTAATACACG
* * * * *** ** * *
83784913 TAGTATCTTGTACTTATTACTACACACGTGATCGAAGTTGTCGGATACGCA
1 TAGTAGCCTGCACTTATTACTACACACGTGA-CCAA-CAATCTAATACACG
* * * ** * ** *
83784964 TAGTAGCCAGCACTTAGTACTACACATGCAACCTAACTATCTGGTACACA
1 TAGTAGCCTGCACTTATTACTACACACGTGACC-AACAATCTAATACACG
*
83785014 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTATTACTACACACGTGACC
83785047 CTAAACCATC
Statistics
Matches: 144, Mismatches: 36, Indels: 7
0.77 0.19 0.04
Matches are distributed among these distances:
49 28 0.19
50 83 0.58
51 33 0.23
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTATTACTACACACGTGACCAACAATCTAATACACG
Found at i:83784988 original size:101 final size:101
Alignment explanation
Indices: 83784863--83785044 Score: 247
Period size: 101 Copynumber: 1.8 Consensus size: 101
83784853 CTAGTACACG
* * ** * * * *
83784863 TAGTAGCCTGCACTTATTACTACACACGTGACCTAACCATCTAATACACGTAGTATCTTGTACTT
1 TAGTAGCCAGCACTTAGTACTACACACGCAACCTAACCATCTAATACACATAGTAGCCTGCACTT
*
83784928 ATTACTACACACGTGATCGAAGTTGTCGGATACGCA
66 AGTACTACACACGTGATCGAAGTTGTCGGATACGCA
* * **
83784964 TAGTAGCCAGCACTTAGTACTACACATGCAACCTAACTATCTGGTACACATAGTAGCCTGCACTT
1 TAGTAGCCAGCACTTAGTACTACACACGCAACCTAACCATCTAATACACATAGTAGCCTGCACTT
83785029 AGTACTACACACGTGA
66 AGTACTACACACGTGA
83785045 CCCTAAACCA
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
101 68 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (101 bp):
TAGTAGCCAGCACTTAGTACTACACACGCAACCTAACCATCTAATACACATAGTAGCCTGCACTT
AGTACTACACACGTGATCGAAGTTGTCGGATACGCA
Found at i:83786376 original size:28 final size:28
Alignment explanation
Indices: 83786311--83786379 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 28
83786301 TATGTGGTAT
* *
83786311 TTAGTGTGGGAAATATTGAAAATGGCAC
1 TTAGTGTGTGAGATATTGAAAATGGCAC
* **
83786339 TTGGTGTGTGAGATATTGAGTATGGCAC
1 TTAGTGTGTGAGATATTGAAAATGGCAC
*
83786367 TTAGTTTGTGAGA
1 TTAGTGTGTGAGA
83786380 CATCGAAGAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.28, C:0.06, G:0.32, T:0.35
Consensus pattern (28 bp):
TTAGTGTGTGAGATATTGAAAATGGCAC
Found at i:83788782 original size:40 final size:40
Alignment explanation
Indices: 83788738--83788813 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
83788728 CGGCTAAGAA
*
83788738 TGGCACTTAGTGTGCGGTTTGAAATAGCTTCGGCTAAATG
1 TGGCACTTAGTGTGCGATTTGAAATAGCTTCGGCTAAATG
* * *
83788778 TGGCACTTGGTTTGCGATTTGAGATAGCTTCGGCTA
1 TGGCACTTAGTGTGCGATTTGAAATAGCTTCGGCTA
83788814 TATATATATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTTGAAATAGCTTCGGCTAAATG
Found at i:83788902 original size:28 final size:28
Alignment explanation
Indices: 83788828--83788905 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 28
83788818 TATATATATG
* *
83788828 TGGCACTTAGTGTGCGAAACATTGAGAA
1 TGGCACTTAGTGTGCGAGACATGGAGAA
* * *
83788856 TGGCACTTGGTGTGCGAGATATGGAGTA
1 TGGCACTTAGTGTGCGAGACATGGAGAA
*
83788884 TGGCACTTAGTGTGTGAGACAT
1 TGGCACTTAGTGTGCGAGACAT
83788906 CAAAGATGCA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.26, C:0.13, G:0.33, T:0.28
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAGACATGGAGAA
Found at i:83798440 original size:85 final size:86
Alignment explanation
Indices: 83798289--83798452 Score: 204
Period size: 85 Copynumber: 1.9 Consensus size: 86
83798279 ATCTGAGATA
* * * * * * * **
83798289 TCGTGTAAGATCGTGTCTGGGACACAGGCCTCGATTTTAGAATTACGTGTAAGACCATGTTTGGG
1 TCGTGTAAGACCCTGTCTAGGACACAGGCATCGATATTAGAATTACATGTAAGACCACGTCCGGG
83798354 ACATCAACATTGTATCTTATT
66 ACATCAACATTGTATCTTATT
* *
83798375 TCGTGTAAGACCCTGTCTAGGACAGAGGCATTGATATT-GAATTACATGTAAGACCACGTCCGGG
1 TCGTGTAAGACCCTGTCTAGGACACAGGCATCGATATTAGAATTACATGTAAGACCACGTCCGGG
**
83798439 ACATCGGCATTGTA
66 ACATCAACATTGTA
83798453 CTCGTTTATG
Statistics
Matches: 65, Mismatches: 13, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
85 34 0.52
86 31 0.48
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (86 bp):
TCGTGTAAGACCCTGTCTAGGACACAGGCATCGATATTAGAATTACATGTAAGACCACGTCCGGG
ACATCAACATTGTATCTTATT
Found at i:83800608 original size:17 final size:17
Alignment explanation
Indices: 83800586--83800621 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
83800576 AGCATTAATG
83800586 TGCAAAAGGTTTGAAGA
1 TGCAAAAGGTTTGAAGA
83800603 TGCAAAAGGTTTGAAGA
1 TGCAAAAGGTTTGAAGA
83800620 TG
1 TG
83800622 GGCTAAACGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.39, C:0.06, G:0.31, T:0.25
Consensus pattern (17 bp):
TGCAAAAGGTTTGAAGA
Found at i:83809088 original size:15 final size:14
Alignment explanation
Indices: 83809032--83809148 Score: 62
Period size: 15 Copynumber: 8.1 Consensus size: 14
83809022 TTATTATGTT
*
83809032 TCTATTTATATTTA
1 TCTATTTTTATTTA
*
83809046 T-T-TTCTTATTCTAA
1 TCTATTTTTATT-T-A
*
83809060 TACTATTATTATTTA
1 T-CTATTTTTATTTA
83809075 TCTAATTTTTATTTA
1 TCT-ATTTTTATTTA
* *
83809090 TCTATTTATATTTC
1 TCTATTTTTATTTA
*
83809104 TACTATTATTATATT-
1 T-CTATTTTTAT-TTA
83809119 TCTATTTATTATATT-
1 TCTATTT-TTAT-TTA
* *
83809134 TTTATTTCTATTTA
1 TCTATTTTTATTTA
83809148 T
1 T
83809149 ATACTAATAT
Statistics
Matches: 82, Mismatches: 11, Indels: 20
0.73 0.10 0.18
Matches are distributed among these distances:
12 6 0.07
13 4 0.05
14 24 0.29
15 37 0.45
16 4 0.05
17 7 0.09
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (14 bp):
TCTATTTTTATTTA
Found at i:83809101 original size:29 final size:28
Alignment explanation
Indices: 83809020--83809127 Score: 82
Period size: 29 Copynumber: 3.8 Consensus size: 28
83809010 TTATTGCTAT
83809020 TATTATTATGTT-TCTATTTATATTTAT-
1 TATTATTAT-TTATCTATTTATATTTATC
*
83809047 T-TTCTTATTCTAATACTA-TTATTATTTATC
1 TATTATTATT-T-AT-CTATTTA-TATTTATC
* *
83809077 TAATTTTTATTTATCTATTTATATTTCTAC
1 T-ATTATTATTTATCTATTTATATTTAT-C
83809107 TATTATTATATT-TCTATTTAT
1 TATTATTAT-TTATCTATTTAT
83809128 TATATTTTTA
Statistics
Matches: 66, Mismatches: 4, Indels: 20
0.73 0.04 0.22
Matches are distributed among these distances:
25 1 0.02
26 7 0.11
27 1 0.02
28 4 0.06
29 35 0.53
30 10 0.15
31 1 0.02
32 7 0.11
ACGTcount: A:0.27, C:0.08, G:0.01, T:0.64
Consensus pattern (28 bp):
TATTATTATTTATCTATTTATATTTATC
Found at i:83809117 original size:17 final size:15
Alignment explanation
Indices: 83809095--83809140 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
83809085 ATTTATCTAT
83809095 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
83809112 TTATATTTCTATTTA
1 TTATATTTCTATTTA
*
83809127 TTATATTTTTATTT
1 TTATATTTCTATTT
83809141 CTATTTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:83809184 original size:52 final size:54
Alignment explanation
Indices: 83809063--83809184 Score: 125
Period size: 52 Copynumber: 2.4 Consensus size: 54
83809053 ATTCTAATAC
* * *
83809063 TATTATTATTTATC-TA-ATTTTTATTTATCTATTTATATTTCTACTATTATTA
1 TATTATTATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
* *
83809115 TATT-TCTA--TTTATTATATTTTTA-TT-TCTATTTATA-TACTAATATTATTT
1 TATTAT-TATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
83809164 TCATTATTATTTTTCTTATAT
1 T-ATTATTATTTTTCTTATAT
83809185 ATGTTTTTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
49 12 0.21
50 17 0.30
51 6 0.11
52 22 0.39
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (54 bp):
TATTATTATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
Found at i:83809222 original size:4 final size:4
Alignment explanation
Indices: 83809213--83809253 Score: 82
Period size: 4 Copynumber: 10.2 Consensus size: 4
83809203 ATTAACATTC
83809213 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT T
83809254 TACATTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:83809396 original size:25 final size:25
Alignment explanation
Indices: 83809298--83809397 Score: 76
Period size: 25 Copynumber: 3.9 Consensus size: 25
83809288 TATAATGCTC
* *
83809298 ATTTTAA-ATTTTTATACATTATTT
1 ATTTTAATTTTTTTATACATTATAT
* * * *
83809322 ACTTTAATATTTTCATATATTATAT
1 ATTTTAATTTTTTTATACATTATAT
* *
83809347 ATTTCAAACTTTTTTTCACACATTATAT
1 ATTT-TAA-TTTTTTT-ATACATTATAT
* *
83809375 ATTTTGATTTTTTTATATATTAT
1 ATTTTAATTTTTTTATACATTAT
83809398 TTTTAAAGAG
Statistics
Matches: 58, Mismatches: 14, Indels: 7
0.73 0.18 0.09
Matches are distributed among these distances:
24 6 0.10
25 24 0.41
26 9 0.16
27 6 0.10
28 13 0.22
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (25 bp):
ATTTTAATTTTTTTATACATTATAT
Found at i:83813026 original size:27 final size:27
Alignment explanation
Indices: 83812987--83813164 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
83812977 ATGTTGAGCC
* *
83812987 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
83813014 CACACACTTAGTGCTACGTAATAAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
83813041 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
83813069 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
83813096 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
83813123 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
83813150 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
83813165 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:83813147 original size:54 final size:55
Alignment explanation
Indices: 83812987--83813164 Score: 182
Period size: 54 Copynumber: 3.3 Consensus size: 55
83812977 ATGTTGAGCC
* * * * * * * *
83812987 CGCACACTCAGTGCTATATAATC-AACTCACACACTTAGTGCTACGTAATAAAAT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
** * *
83813041 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
83813096 CGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
*
83813150 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
83813165 GTACAATTTA
Statistics
Matches: 102, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
54 59 0.58
55 43 0.42
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:83819527 original size:177 final size:177
Alignment explanation
Indices: 83819217--83819591 Score: 588
Period size: 177 Copynumber: 2.1 Consensus size: 177
83819207 ACGACATCGA
* *
83819217 AAAATTACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCAAAGATGGCGAGTCTTATCTCT
1 AAAATTACAGATCTTATCTCCCTAAGAAGTAGCGGAGCAGATCAAAGATGGCGAGTCTTATCTCC
* *
83819282 ATGTATCGGCTATGGAGCAGAATTTAGCCACCAACCTTATCTCTCTGATGTAGCAAGAGAGCAGG
66 ATGTATCGGCTATCGAGCAGAATTTAGCCACCAACCTTATATCTCTGATGTAGCAAGAGAGCAGG
* *
83819347 TTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCGGATTG
131 TTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
* * * * *
83819394 AAAATTGCAAATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCAAAGATGGTGATTCTTATCTCC
1 AAAATTACAGATCTTATCTCCCTAAGAAGTAGCGGAGCAGATCAAAGATGGCGAGTCTTATCTCC
* * ** *
83819459 ATGTATCGGCTATCGAGTAGATTTTAGCCACCAGTCTTATATCTCTGATGTAGCAAGAGAGTAGG
66 ATGTATCGGCTATCGAGCAGAATTTAGCCACCAACCTTATATCTCTGATGTAGCAAGAGAGCAGG
* *
83819524 TTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGTAAGTAGACTG
131 TTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
83819571 AAAATTACAGATCTTATCTCC
1 AAAATTACAGATCTTATCTCC
83819592 ATGTATCGGC
Statistics
Matches: 178, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
177 178 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (177 bp):
AAAATTACAGATCTTATCTCCCTAAGAAGTAGCGGAGCAGATCAAAGATGGCGAGTCTTATCTCC
ATGTATCGGCTATCGAGCAGAATTTAGCCACCAACCTTATATCTCTGATGTAGCAAGAGAGCAGG
TTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
Found at i:83819528 original size:133 final size:132
Alignment explanation
Indices: 83819449--83819702 Score: 321
Period size: 133 Copynumber: 1.9 Consensus size: 132
83819439 AGATGGTGAT
*
83819449 TCTTATCTCCATGTATCGGCTATCGAGTAGATTTTAGCCACCAG-TCTTATATCTCTGATGTAGC
1 TCTTATCTCCATGTATCGGCTATCGAGTAGATTTTAGCCACCAGCT-TTATATCTCTGAGGTAGC
* * * * * * *
83819513 AAGAGAGTAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGTAAGTAGACTGAAAATTA
65 AAGAGAGTACGTTGAAAATACAAATCTTATCTCCCTAAGGTAGC-AGTAAGCAGACTCAAAATTA
83819578 CAGA
129 CAGA
* *
83819582 TCTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATCGAGTAGATTTTAGCCACCAGCTTTATATCTCTGAGGTAGCA
* ** * * * *
83819647 AGAGAGTACGTTGAAGATACAGGTATTATCTTCCTGAGGTAGCAAGGAAGCAGACT
66 AGAGAGTACGTTGAAAATACAAATCTTATCTCCCTAAGGTAGC-AGTAAGCAGACT
83819703 TACAGATCTT
Statistics
Matches: 112, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
133 111 0.99
134 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (132 bp):
TCTTATCTCCATGTATCGGCTATCGAGTAGATTTTAGCCACCAGCTTTATATCTCTGAGGTAGCA
AGAGAGTACGTTGAAAATACAAATCTTATCTCCCTAAGGTAGCAGTAAGCAGACTCAAAATTACA
GA
Found at i:83819939 original size:305 final size:306
Alignment explanation
Indices: 83819272--83819923 Score: 748
Period size: 305 Copynumber: 2.1 Consensus size: 306
83819262 AGATGGCGAG
* * * ** * * *
83819272 TCTTATCTCTATGTATCGGCTATGGAGCAGAAT-TTAGCCACCAACCTTATCTCTCTGATGTAGC
1 TCTTATCTCCATGTAGCAGCTATGGAGCAG-ATGAAAACCACC-AGCTTATCTCTCTGAGGTAGC
* * *
83819336 AAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCGGATTGAAAATTG
64 AAGAGAGCACGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGC-GA-TG-AAATTA
* * *
83819401 CAAATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCAAAGATGGTGATTCTTATCTCCATGTATC
126 CAAATCTTATCTCCATAAGCAGTAGCGGAGCAGATCAAAGATGGCGAGTCTTATCTCCATGTATC
* * ** * * *
83819466 GGCTATCGAGTAGATTTTAGCCACCAGTCTTATATCTCTGATGTAGCAAGAGAGTAGGTTGAAGA
191 GACTATCGAGCAGATTTTAGCCACCAACCTTATATCTCTAAGGTAGCAAGAGAGCAGGTTGAAGA
*
83819531 TACAAGTCTTATCTTCCTGAGGTAGCAAGTAAGTAGACTGAAAATTACAGA
256 TACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTACAGA
* * * *** *
83819582 TCTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTAGCAGCTATGGAGCAGATGAAAACCACCAGC-TTATCTCTCTGAGGTAGCA
* * * *
83819647 AGAGAGTACGTTGAAGATACAGGTATTATCTTCCTGAGGTAGCAAGGAAGC-A-G-ACTTACAGA
65 AGAGAGCACGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCGATGAAATTACAAA
* * * * * *
83819709 TCTTATCTTCATGTATCAGATA-TGGAGTAGATCTAAA-ATGGCGAGTCTTATCTCTATGTATCG
130 TCTTATCTCCAT-AAGCAG-TAGCGGAGCAGATC-AAAGATGGCGAGTCTTATCTCCATGTATCG
* *
83819772 ACTAT-GAAGCAGATTTTAGCCACCAACCTTATCTCTCTAAGGTAGCAAGAGAGCGGGTTGAAGA
192 ACTATCG-AGCAGATTTTAGCCACCAACCTTATATCTCTAAGGTAGCAAGAGAGCAGGTTGAAGA
83819836 TACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTACAGA
256 TACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTACAGA
83819887 TCTTATCTCC-T-TAAGCAG-TAGTGGAGCAGATCGAAAA
1 TCTTATCTCCATGT-AGCAGCTA-TGGAGCAGAT-GAAAA
83819924 TGGCGAGTCT
Statistics
Matches: 296, Mismatches: 37, Indels: 23
0.83 0.10 0.06
Matches are distributed among these distances:
303 3 0.01
304 30 0.10
305 150 0.51
306 6 0.02
308 1 0.00
309 4 0.01
310 102 0.34
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (306 bp):
TCTTATCTCCATGTAGCAGCTATGGAGCAGATGAAAACCACCAGCTTATCTCTCTGAGGTAGCAA
GAGAGCACGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCGATGAAATTACAAAT
CTTATCTCCATAAGCAGTAGCGGAGCAGATCAAAGATGGCGAGTCTTATCTCCATGTATCGACTA
TCGAGCAGATTTTAGCCACCAACCTTATATCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAA
GTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTACAGA
Found at i:83820250 original size:45 final size:45
Alignment explanation
Indices: 83820198--83820381 Score: 121
Period size: 44 Copynumber: 4.1 Consensus size: 45
83820188 GATACAAGTA
*
83820198 TTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAAATTACAGATC
1 TTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATC
* * * * *** *** *
83820243 TTATCTTCATGTA--TCGGCTATGAAGCAGA-TTTTAGCCACCAGCT-
1 TTATCTTCCTG-AGGT-AGCAAGGAAGCAGACTGAAAATTA-CAGATC
** * *
83820287 TTATC-TCTCTGAGGTAGCAA-GAGAGCAGGTTGAAGA-TACAGGTC
1 TTATCTTC-CTGAGGTAGCAAGGA-AGCAGACTGAAAATTACAGATC
*
83820331 TTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAAAATTACAGATC
1 TTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATC
83820376 TTATCT
1 TTATCT
83820382 CCATGTATCA
Statistics
Matches: 100, Mismatches: 27, Indels: 24
0.66 0.18 0.16
Matches are distributed among these distances:
43 9 0.09
44 46 0.46
45 44 0.44
46 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (45 bp):
TTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGATC
Found at i:83820264 original size:133 final size:133
Alignment explanation
Indices: 83820108--83820405 Score: 470
Period size: 133 Copynumber: 2.2 Consensus size: 133
83820098 AGATGGCGAT
* * * *
83820108 TCTTATCTCCATGTATCGCCTATGGAGCAGATTTTAGCCACTAGTTTTATCTCTCTAATGTAGCA
1 TCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACCAGCTTTATCTCTCTAAGGTAGCA
* *
83820173 AGAGAGTAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAAACTAAAAATTAC
83820238 AGA
131 AGA
* * * *
83820241 TCTTATCTTCATGTATCGGCTATGAAGCAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACCAGCTTTATCTCTCTAAGGTAGCA
* * *
83820306 AGAGAGCAGGTTGAAGATACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAAACTAAAAATTAC
83820371 AGA
131 AGA
*
83820374 TCTTATCTCCATGTATCAACTATGGAGCAGAT
1 TCTTATCTCCATGTATCGACTATGGAGCAGAT
83820406 CTAAAATGGT
Statistics
Matches: 149, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
133 149 1.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (133 bp):
TCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACCAGCTTTATCTCTCTAAGGTAGCA
AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAAACTAAAAATTAC
AGA
Found at i:83820293 original size:177 final size:177
Alignment explanation
Indices: 83819582--83820252 Score: 901
Period size: 177 Copynumber: 3.8 Consensus size: 177
83819572 AAATTACAGA
* * *
83819582 TCTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCA
* * *
83819647 AGAGAGTACGTTGAAGATACAGGTATTATCTTCCTGAGGTAGCAAGGAAGCAGAC------TTAC
66 AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
* * *
83819706 AGATCTTATCTTCATGTATCAGATA-TGGAGTAGATCTAAAATGGCGAG
131 AGATCTTATCTTCAT-TAGCAG-TAGTGGAGCAGATCTAAAATGGCCAG
* * * *
83819754 TCTTATCTCTATGTATCGACTATGAAGCAGATTTTAGCCACCAACCTTATCTCTCTAAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCA
* * *
83819819 AGAGAGCGGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
* * *
83819884 AGATCTTATC-TCCTTAAGCAGTAGTGGAGCAGATCGAAAATGGCGAG
131 AGATCTTATCTTCATT-AGCAGTAGTGGAGCAGATCTAAAATGGCCAG
* * *
83819931 TCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGACGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCA
* * *
83819996 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAAAATTGC
66 AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
* * * * * *
83820061 AGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATC-AAAGATGGCGAT
131 AGATCTTATCTTCATTAGCAGTAGTGGAGCAGATCTAAA-ATGGCCAG
* * ** *
83820108 TCTTATCTCCATGTATCGCCTATGGAGCAGATTTTAGCCACTAGTTTTATCTCTCTAATGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCA
* *
83820173 AGAGAGTAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
83820238 AGATCTTATCTTCAT
131 AGATCTTATCTTCAT
83820253 GTATCGGCTA
Statistics
Matches: 443, Mismatches: 46, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
172 107 0.24
176 6 0.01
177 313 0.71
178 17 0.04
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (177 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCA
AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
AGATCTTATCTTCATTAGCAGTAGTGGAGCAGATCTAAAATGGCCAG
Found at i:83820707 original size:177 final size:177
Alignment explanation
Indices: 83820241--83820763 Score: 778
Period size: 177 Copynumber: 2.9 Consensus size: 177
83820231 AAATTACAGA
* * *
83820241 TCTTATCTTCATGTATCGGCTATGAAGCAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
*
83820306 AGAGAGCAGGTTGAAGATACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAAAATTAC
66 AGAGAGCAGGTTGAAGATACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
* * * * * *
83820371 AGATCTTATCTCCATGTATCAACTA-TGGAGCAGATCTAAAATGGTGAG
131 AGATCTTATCTCCCT-AAGC-AGTAGTGGAGCAGATCGAAAATGGCGAG
* * *
83820419 TCTTATCTCCATGTATCGACTATGGAGTAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* * * *
83820484 AGAGAGGAGATTGAAGATACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTAT
66 AGAGAGCAGGTTGAAGATACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
83820549 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCGAG
131 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCGAG
* * * *
83820596 TCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAACGTTATCTCTCTGATGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
** * * *
83820661 AGAGAGTTGGCTGAAGATACAAGTCTTATCTTCCTGGGGTAGCAAGGAAGCAGACTGAAAATTAC
66 AGAGAGCAGGTTGAAGATACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
*
83820726 AGATCTTATCTTCCTAAGCAGTAGTGGAGCAGATCGAA
131 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
83820764 GACGGTGAGC
Statistics
Matches: 311, Mismatches: 33, Indels: 3
0.90 0.10 0.01
Matches are distributed among these distances:
176 3 0.01
177 175 0.56
178 133 0.43
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (177 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
AGAGAGCAGGTTGAAGATACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCGAG
Found at i:83820779 original size:44 final size:44
Alignment explanation
Indices: 83820730--83821245 Score: 215
Period size: 44 Copynumber: 11.6 Consensus size: 44
83820720 AATTACAGAT
*
83820730 CTTATCTTCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
* * * * *
83820774 CTTATCCCCCTAAGCAGTAG-GGAAAACAG-GCTGAAAATGACAGATCA-C
1 CTTATCTCCCTAAGCAGTAGTGG--AGCAGATC-G--AA-GAC-GGTGAGC
* * * * * *
83820822 CCTATCTCCTTAAGCAGTAGTGGAGTAGGTTGAAGACTGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
* * * *** *
83820866 CTTATAC-CCCTAAGCAGTAG-GGAAACAG-GCTGAAAATTAT-AGAT
1 CTTAT-CTCCCTAAGCAGTAGTGG-AGCAGATC-GAAGACGGTGAG-C
**
83820910 CTTATCTCCCTAAAAAGTAGTGGAGCAGATCGAAGACGGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
* * * * * *
83820954 CTTATCCCCCTAAGCAGTAG-GGAAGCAGGCTGGAA-A--TTACAGAT
1 CTTATCTCCCTAAGCAGTAGTGG-AGCA-GATCGAAGACGGT-GAG-C
* * * *
83820998 CTTATCTCCCTAAGCAGTAGTGAAGCTGATCAAAGACAGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
* * * * * * *
83821042 CTTATCCCCCTAAGCAGTAG-GGAAACAGGTTGGAA-A--TTACAGAT
1 CTTATCTCCCTAAGCAGTAGTGG-AGCA-GATCGAAGACGGT-GAG-C
* *
83821086 CTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAGATGGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
* * * * * * *
83821130 CTTATCCCCCTAAGCAGTAG-GGAAACAGGCTGGAA-A--TTACAGAT
1 CTTATCTCCCTAAGCAGTAGTGG-AGCA-GATCGAAGACGGT-GAG-C
* * *
83821174 CTTATCTCCCTAAGAAATAGTGGAGCAGATCGAAGACGGTGATC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
* * *
83821218 CTTATCTCCCTGAGCAATAGTAGAGCAG
1 CTTATCTCCCTAAGCAGTAGTGGAGCAG
83821246 GCTTGAAATT
Statistics
Matches: 339, Mismatches: 91, Indels: 84
0.66 0.18 0.16
Matches are distributed among these distances:
42 3 0.01
43 34 0.10
44 230 0.68
45 37 0.11
46 3 0.01
47 6 0.02
48 21 0.06
49 5 0.01
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (44 bp):
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
Found at i:83820954 original size:88 final size:88
Alignment explanation
Indices: 83820706--83821291 Score: 789
Period size: 88 Copynumber: 6.6 Consensus size: 88
83820696 GGGGTAGCAA
* * *
83820706 GGAAGCAGACTGAAAATTACAGATCTTATCTTCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTG
1 GGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTG
83820771 AGCCTTATCCCCCTAAGCAGTAG
66 AGCCTTATCCCCCTAAGCAGTAG
* * * * * *
83820794 GGAAAACAGGCTGAAAATGACAGATCACCCTATCTCCTTAAGCAGTAGTGGAGTAGGTTGAAGAC
1 GG-AAACAGGCTGAAAATTACAGAT---CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC
* *
83820859 TGTGAGCCTTATACCCCTAAGCAGTAG
62 GGTGAGCCTTATCCCCCTAAGCAGTAG
* **
83820886 GGAAACAGGCTGAAAATTATAGATCTTATCTCCCTAAAAAGTAGTGGAGCAGATCGAAGACGGTG
1 GGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTG
83820951 AGCCTTATCCCCCTAAGCAGTAG
66 AGCCTTATCCCCCTAAGCAGTAG
* * * * * *
83820974 GGAAGCAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGAAGCTGATCAAAGACAGTG
1 GGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTG
83821039 AGCCTTATCCCCCTAAGCAGTAG
66 AGCCTTATCCCCCTAAGCAGTAG
* * * *
83821062 GGAAACAGGTTGGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAGATGGTG
1 GGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTG
83821127 AGCCTTATCCCCCTAAGCAGTAG
66 AGCCTTATCCCCCTAAGCAGTAG
* * *
83821150 GGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGAAATAGTGGAGCAGATCGAAGACGGTG
1 GGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTG
* * * *
83821215 ATCCTTATCTCCCTGAGCAATA-
66 AGCCTTATCCCCCTAAGCAGTAG
* * * *
83821237 GTAGAGCAGGCTTG-AAATTACAGATCATATCTCCCTAAGCAATAGTGGAGCAGAT
1 GGA-AACAGGC-TGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
83821292 TGAAATGAAA
Statistics
Matches: 441, Mismatches: 51, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
87 2 0.00
88 340 0.77
89 21 0.05
91 20 0.05
92 58 0.13
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (88 bp):
GGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTG
AGCCTTATCCCCCTAAGCAGTAG
Found at i:83822263 original size:15 final size:14
Alignment explanation
Indices: 83822207--83822323 Score: 62
Period size: 15 Copynumber: 8.1 Consensus size: 14
83822197 TTATTATGTT
*
83822207 TCTATTTATATTTA
1 TCTATTTTTATTTA
*
83822221 T-T-TTCTTATTCTAA
1 TCTATTTTTATT-T-A
*
83822235 TACTATTATTATTTA
1 T-CTATTTTTATTTA
83822250 TCTAATTTTTATTTA
1 TCT-ATTTTTATTTA
* *
83822265 TCTATTTATATTTC
1 TCTATTTTTATTTA
*
83822279 TACTATTATTATATT-
1 T-CTATTTTTAT-TTA
83822294 TCTATTTATTATATT-
1 TCTATTT-TTAT-TTA
* *
83822309 TTTATTTCTATTTA
1 TCTATTTTTATTTA
83822323 T
1 T
83822324 ATACTAATAT
Statistics
Matches: 82, Mismatches: 11, Indels: 20
0.73 0.10 0.18
Matches are distributed among these distances:
12 6 0.07
13 4 0.05
14 24 0.29
15 37 0.45
16 4 0.05
17 7 0.09
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (14 bp):
TCTATTTTTATTTA
Found at i:83822276 original size:29 final size:28
Alignment explanation
Indices: 83822195--83822302 Score: 82
Period size: 29 Copynumber: 3.8 Consensus size: 28
83822185 TTATTGCTAT
83822195 TATTATTATGTT-TCTATTTATATTTAT-
1 TATTATTAT-TTATCTATTTATATTTATC
*
83822222 T-TTCTTATTCTAATACTA-TTATTATTTATC
1 TATTATTATT-T-AT-CTATTTA-TATTTATC
* *
83822252 TAATTTTTATTTATCTATTTATATTTCTAC
1 T-ATTATTATTTATCTATTTATATTTAT-C
83822282 TATTATTATATT-TCTATTTAT
1 TATTATTAT-TTATCTATTTAT
83822303 TATATTTTTA
Statistics
Matches: 66, Mismatches: 4, Indels: 20
0.73 0.04 0.22
Matches are distributed among these distances:
25 1 0.02
26 7 0.11
27 1 0.02
28 4 0.06
29 35 0.53
30 10 0.15
31 1 0.02
32 7 0.11
ACGTcount: A:0.27, C:0.08, G:0.01, T:0.64
Consensus pattern (28 bp):
TATTATTATTTATCTATTTATATTTATC
Found at i:83822292 original size:17 final size:15
Alignment explanation
Indices: 83822270--83822315 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
83822260 ATTTATCTAT
83822270 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
83822287 TTATATTTCTATTTA
1 TTATATTTCTATTTA
*
83822302 TTATATTTTTATTT
1 TTATATTTCTATTT
83822316 CTATTTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:83822359 original size:52 final size:54
Alignment explanation
Indices: 83822238--83822359 Score: 125
Period size: 52 Copynumber: 2.4 Consensus size: 54
83822228 ATTCTAATAC
* * *
83822238 TATTATTATTTATC-TA-ATTTTTATTTATCTATTTATATTTCTACTATTATTA
1 TATTATTATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
* *
83822290 TATT-TCTA--TTTATTATATTTTTA-TT-TCTATTTATA-TACTAATATTATTT
1 TATTAT-TATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
83822339 TCATTATTATTTTTCTTATAT
1 T-ATTATTATTTTTCTTATAT
83822360 ATGTTTTTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
49 12 0.21
50 17 0.30
51 6 0.11
52 22 0.39
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (54 bp):
TATTATTATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
Found at i:83824447 original size:40 final size:40
Alignment explanation
Indices: 83824403--83824716 Score: 538
Period size: 40 Copynumber: 7.8 Consensus size: 40
83824393 GCATTTGTAT
83824403 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
83824443 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
83824483 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
83824523 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
83824563 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
83824603 ATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
83824643 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* ** *
83824683 CTATGCCCGGGCTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
83824717 TTGTGGTAAT
Statistics
Matches: 260, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 260 1.00
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:83829180 original size:43 final size:42
Alignment explanation
Indices: 83829114--83829272 Score: 139
Period size: 43 Copynumber: 3.7 Consensus size: 42
83829104 AGCTCGTACA
*
83829114 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGTAATCAAATAT-G
** *
83829157 ATGCCACTGTCCCAGACAGGGTCTTACACAAAATCAAATAAG
1 ATGCCACTGTCCCAGACAGGGTCTTACACGTAATCAAATATG
* *
83829199 ATGTCGA-TGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-TG
1 ATG-CCACTGTCCCAGACAGGGTCTTACACGT-AA--TCAAATATG
* *
83829243 ATGCCAATGTCCCAGAC-GTGTTCTTACACG
1 ATGCCACTGTCCCAGACAG-GGTCTTACACG
83829273 AAATTAGATA
Statistics
Matches: 96, Mismatches: 12, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
42 27 0.28
43 38 0.40
44 25 0.26
45 6 0.06
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACAGGGTCTTACACGTAATCAAATATG
Found at i:83829223 original size:42 final size:41
Alignment explanation
Indices: 83829122--83829276 Score: 123
Period size: 44 Copynumber: 3.6 Consensus size: 41
83829112 CAATGCCAAC
* *** * *
83829122 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACAAAATCAAATA-AGATG-CAAT
* *
83829165 GTCCCAGACAGGGTCTTACACAAAATCAAATAAGATGTCGAT
1 GTCCCAGACATGGTCTTACACAAAATCAAATAAGATG-CAAT
* *
83829207 GTCCCAGACATGGTCTTACACGTAAATCTCAAAT-TGATGCCAAT
1 GTCCCAGACATGGTCTTACAC--AAA-ATCAAATAAGATG-CAAT
* * *
83829251 GTCCCAGACGTGTTCTTACACGAAAT
1 GTCCCAGACATGGTCTTACACAAAAT
83829277 TAGATATCGG
Statistics
Matches: 91, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
41 1 0.01
42 28 0.31
43 27 0.30
44 29 0.32
45 6 0.07
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (41 bp):
GTCCCAGACATGGTCTTACACAAAATCAAATAAGATGCAAT
Found at i:83833172 original size:28 final size:28
Alignment explanation
Indices: 83833132--83833192 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
83833122 TTAGTTCATT
* * *
83833132 ACAGTCTGGGCCTTAGCCCTATACAGTA
1 ACAGTCTAGGCCTAAGCCCAATACAGTA
83833160 ACAGTCTAGGCCTAAGCCCAATACAGTA
1 ACAGTCTAGGCCTAAGCCCAATACAGTA
*
83833188 TCAGT
1 ACAGT
83833193 ATGGTGTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (28 bp):
ACAGTCTAGGCCTAAGCCCAATACAGTA
Found at i:83833398 original size:27 final size:27
Alignment explanation
Indices: 83833343--83833407 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
83833333 AGCATAGCTG
* *
83833343 CCAGAAACAGTAAATGTGGCAAAGCCA
1 CCAGTAACAGTAAATGTGACAAAGCCA
* * *
83833370 CCAGTAACAGTGAATGTGACATAGTCA
1 CCAGTAACAGTAAATGTGACAAAGCCA
83833397 CCAGT-ACAGTA
1 CCAGTAACAGTA
83833408 CTTCCTCCAT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 5 0.16
27 27 0.84
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.17
Consensus pattern (27 bp):
CCAGTAACAGTAAATGTGACAAAGCCA
Found at i:83833573 original size:27 final size:27
Alignment explanation
Indices: 83833543--83833633 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
83833533 GGGCATAATT
*
83833543 GTCATTGTACTATACAGGGGTATTACG
1 GTCATTTTACTATACAGGGGTATTACG
* *
83833570 GTCATTTTATCCTAT--AGAGGCATTACG
1 GTCATTTTA--CTATACAGGGGTATTACG
**
83833597 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACTATACAGGGGTATTACG
*
83833624 ATCATTTTAC
1 GTCATTTTAC
83833634 CTATTTTAGG
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
25 2 0.04
27 46 0.88
29 4 0.08
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GTCATTTTACTATACAGGGGTATTACG
Found at i:83833634 original size:27 final size:27
Alignment explanation
Indices: 83833555--83833634 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
83833545 CATTGTACTA
*
83833555 TACAGGGGTATTACGGTCATTTTATCC
1 TACAGGGGTATTACGGTCATTTTACCC
* * *
83833582 TATAGAGGCATTACGGTCATTTTACCC
1 TACAGGGGTATTACGGTCATTTTACCC
*
83833609 TACAGGGGTATTACGATCATTTTACC
1 TACAGGGGTATTACGGTCATTTTACC
83833635 TATTTTAGGG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
TACAGGGGTATTACGGTCATTTTACCC
Found at i:83838262 original size:29 final size:29
Alignment explanation
Indices: 83838199--83838266 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
83838189 TAATCAACCG
*
83838199 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
83838228 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
83838257 CGCACACTTA
1 CGCACACTTA
83838267 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:83838436 original size:29 final size:29
Alignment explanation
Indices: 83838373--83838440 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
83838363 TAATCAACCG
83838373 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
83838402 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
83838431 CGCACACTTA
1 CGCACACTTA
83838441 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:83838581 original size:29 final size:30
Alignment explanation
Indices: 83838542--83838620 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
83838532 CTTAATAATC
83838542 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
83838572 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
83838601 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
83838621 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:83838614 original size:174 final size:174
Alignment explanation
Indices: 83838092--83838589 Score: 960
Period size: 174 Copynumber: 2.9 Consensus size: 174
83838082 AGTCCAAGAA
*
83838092 ACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATAGAAA
1 ACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
83838157 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
66 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
83838222 TAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTT
131 TAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTT
83838266 ACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
1 ACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
*
83838331 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGCACTT
66 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
83838396 TAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTT
131 TAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTT
*
83838440 ACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
1 ACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
83838505 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
66 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
*
83838570 TAAACTCGCACACTTAGTGC
131 TAAACTCACACACTTAGTGC
83838590 TGTACAATTT
Statistics
Matches: 319, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 319 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
TAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTT
Found at i:83846216 original size:29 final size:29
Alignment explanation
Indices: 83846153--83846220 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
83846143 TAATCAACCG
*
83846153 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
83846182 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
83846211 CGCACACTTA
1 CGCACACTTA
83846221 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:83846390 original size:29 final size:29
Alignment explanation
Indices: 83846327--83846394 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
83846317 TAATCAACCG
83846327 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
83846356 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
83846385 CGCACACTTA
1 CGCACACTTA
83846395 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:83846535 original size:29 final size:30
Alignment explanation
Indices: 83846496--83846574 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
83846486 CTTAATAATC
83846496 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
83846526 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
83846555 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
83846575 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:83846568 original size:174 final size:174
Alignment explanation
Indices: 83846046--83846543 Score: 960
Period size: 174 Copynumber: 2.9 Consensus size: 174
83846036 AGTCCAAGAA
* *
83846046 ACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATAGAAA
1 ACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
83846111 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
66 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
83846176 TAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTT
131 TAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTT
83846220 ACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
1 ACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
*
83846285 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGCACTT
66 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
83846350 TAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTT
131 TAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTT
83846394 ACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
1 ACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
83846459 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
66 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
*
83846524 TAAACTCGCACACTTAGTGC
131 TAAACTCACACACTTAGTGC
83846544 TGTACAATTT
Statistics
Matches: 319, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 319 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
TAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTT
Found at i:83853169 original size:28 final size:28
Alignment explanation
Indices: 83853107--83853172 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
83853097 ACCCAAGTCT
*
83853107 ACGGATTCATGCTTTGCAAAACATACCG
1 ACGGATTCATGCTTTGCAAAACATACCA
* *
83853135 GCAGATTCATGCTTTGCAAAACATACCA
1 ACGGATTCATGCTTTGCAAAACATACCA
83853163 ACGGATTCAT
1 ACGGATTCAT
83853173 AAGGAAGACC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (28 bp):
ACGGATTCATGCTTTGCAAAACATACCA
Found at i:83867697 original size:43 final size:43
Alignment explanation
Indices: 83867629--83867729 Score: 139
Period size: 43 Copynumber: 2.3 Consensus size: 43
83867619 GTTTATTTAA
* *
83867629 AAAAACGCCGCTAAAGATCATGACCTTTAACGGCATTTTTCCC
1 AAAAACGCCGCTAAAGATCAGGACCTTTAACGGCACTTTTCCC
* * * * *
83867672 ACAAACGCCACTAAAGATCAGGACCTTTAGCGGCGCTTTTCTC
1 AAAAACGCCGCTAAAGATCAGGACCTTTAACGGCACTTTTCCC
83867715 AAAAACGCCGCTAAA
1 AAAAACGCCGCTAAA
83867730 AATTATGACA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.22
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGATCAGGACCTTTAACGGCACTTTTCCC
Found at i:83869197 original size:15 final size:16
Alignment explanation
Indices: 83869171--83869201 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
83869161 TCTCTCTTGC
83869171 TTTTAGATCATATATA
1 TTTTAGATCATATATA
83869187 TTTTA-ATCATATATA
1 TTTTAGATCATATATA
83869202 AGACAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (16 bp):
TTTTAGATCATATATA
Found at i:83869350 original size:13 final size:13
Alignment explanation
Indices: 83869332--83869357 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83869322 TACTTCAAAG
83869332 TTAACATAGAAAA
1 TTAACATAGAAAA
83869345 TTAACATAGAAAA
1 TTAACATAGAAAA
83869358 AAAATCAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.23
Consensus pattern (13 bp):
TTAACATAGAAAA
Found at i:83872641 original size:8 final size:8
Alignment explanation
Indices: 83872630--83872671 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
83872620 AAATATTAAA
83872630 TTTTTTAT
1 TTTTTTAT
83872638 TTTTTTA-
1 TTTTTTAT
83872645 TTTTTTAT
1 TTTTTTAT
**
83872653 TTTTAGAT
1 TTTTTTAT
*
83872661 TTTTTAAT
1 TTTTTTAT
83872669 TTT
1 TTT
83872672 AAATTTTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
7 7 0.24
8 22 0.76
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (8 bp):
TTTTTTAT
Found at i:83872647 original size:15 final size:15
Alignment explanation
Indices: 83872629--83872678 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
83872619 TAAATATTAA
**
83872629 ATTTTTTATTTTTTT
1 ATTTTTTATTTTTAG
83872644 ATTTTTTATTTTTAG
1 ATTTTTTATTTTTAG
* *
83872659 ATTTTTTAATTTTAA
1 ATTTTTTATTTTTAG
83872674 ATTTT
1 ATTTT
83872679 AAAATTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (15 bp):
ATTTTTTATTTTTAG
Found at i:83873472 original size:21 final size:21
Alignment explanation
Indices: 83873458--83873504 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
83873448 CCTAACACTT
83873458 AACCCCTAACCCCTAAGCCTTA
1 AACCCC-AACCCCTAAGCCTTA
* * *
83873480 AACCCCAACCCTTAAACCATA
1 AACCCCAACCCCTAAGCCTTA
83873501 AACC
1 AACC
83873505 ATAAACCATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.38, C:0.45, G:0.02, T:0.15
Consensus pattern (21 bp):
AACCCCAACCCCTAAGCCTTA
Found at i:83873494 original size:14 final size:15
Alignment explanation
Indices: 83873465--83873497 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
83873455 CTTAACCCCT
*
83873465 AACCCCTAAGCCTTA
1 AACCCCTAACCCTTA
83873480 AACCCC-AACCCTTA
1 AACCCCTAACCCTTA
83873494 AACC
1 AACC
83873498 ATAAACCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.36, C:0.45, G:0.03, T:0.15
Consensus pattern (15 bp):
AACCCCTAACCCTTA
Found at i:83873509 original size:14 final size:14
Alignment explanation
Indices: 83873492--83873545 Score: 56
Period size: 14 Copynumber: 3.8 Consensus size: 14
83873482 CCCCAACCCT
83873492 TAAACCATAAACCA
1 TAAACCATAAACCA
*
83873506 TAAACCATAATCTC-
1 TAAACCATAAAC-CA
*
83873520 TAAACCCATAATCCA
1 TAAA-CCATAAACCA
*
83873535 TAAACCTTAAA
1 TAAACCATAAA
83873546 ACAGTAACTC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
14 21 0.62
15 13 0.38
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAACCATAAACCA
Found at i:83873699 original size:7 final size:7
Alignment explanation
Indices: 83873687--83873775 Score: 63
Period size: 7 Copynumber: 12.4 Consensus size: 7
83873677 ATTAATTAAT
83873687 CTAAACC
1 CTAAACC
83873694 CTAAACTC
1 CTAAAC-C
* *
83873702 ATAATCC
1 CTAAACC
83873709 CTAAACC
1 CTAAACC
*
83873716 TTAAACC
1 CTAAACC
* *
83873723 ATAAATC
1 CTAAACC
*
83873730 CTAAAAC
1 CTAAACC
*
83873737 ATAAACC
1 CTAAACC
83873744 CTAAACC
1 CTAAACC
* *
83873751 ATGAACC
1 CTAAACC
83873758 ACT-AACC
1 -CTAAACC
83873765 CTTAAACC
1 C-TAAACC
83873773 CTA
1 CTA
83873776 CCACCTAAAC
Statistics
Matches: 63, Mismatches: 15, Indels: 8
0.73 0.17 0.09
Matches are distributed among these distances:
6 1 0.02
7 51 0.81
8 11 0.17
ACGTcount: A:0.45, C:0.34, G:0.01, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:83873734 original size:14 final size:14
Alignment explanation
Indices: 83873687--83873775 Score: 70
Period size: 14 Copynumber: 6.2 Consensus size: 14
83873677 ATTAATTAAT
*
83873687 CTAAACCCTAAACTC
1 CTAAACCATAAAC-C
* * *
83873702 ATAATCCCTAAACC
1 CTAAACCATAAACC
* *
83873716 TTAAACCATAAATC
1 CTAAACCATAAACC
*
83873730 CTAAAACATAAACC
1 CTAAACCATAAACC
*
83873744 CTAAACCATGAACC
1 CTAAACCATAAACC
* *
83873758 ACTAACCCTTAAACC
1 -CTAAACCATAAACC
83873773 CTA
1 CTA
83873776 CCACCTAAAC
Statistics
Matches: 59, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
14 37 0.63
15 22 0.37
ACGTcount: A:0.45, C:0.34, G:0.01, T:0.20
Consensus pattern (14 bp):
CTAAACCATAAACC
Found at i:83873783 original size:21 final size:20
Alignment explanation
Indices: 83873755--83873794 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
83873745 TAAACCATGA
* *
83873755 ACCACTAACCCTTAAACCCT
1 ACCACTAAACATTAAACCCT
83873775 ACCACCTAAACATTAAACCC
1 ACCA-CTAAACATTAAACCC
83873795 CAACCCTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.17
Consensus pattern (20 bp):
ACCACTAAACATTAAACCCT
Found at i:83873783 original size:50 final size:50
Alignment explanation
Indices: 83873688--83873794 Score: 123
Period size: 50 Copynumber: 2.1 Consensus size: 50
83873678 TTAATTAATC
83873688 TAAACCCTAAACTCATAATCCCTAAACCTTAAACCATAAATCCTAAAACA-
1 TAAACCCTAAACTCATAATCCCTAAACCTTAAACCATAAATCCT-AAACAT
* * *
83873738 TAAACCCTAAAC-CATGAA-CCACTAACCCTTAAACCCTACCA-CCTAAACAT
1 TAAACCCTAAACTCAT-AATCC-CTAAACCTTAAACCATA-AATCCTAAACAT
83873788 TAAACCC
1 TAAACCC
83873795 CAACCCTTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
49 10 0.20
50 39 0.78
51 1 0.02
ACGTcount: A:0.45, C:0.35, G:0.01, T:0.20
Consensus pattern (50 bp):
TAAACCCTAAACTCATAATCCCTAAACCTTAAACCATAAATCCTAAACAT
Found at i:83873948 original size:317 final size:305
Alignment explanation
Indices: 83873278--83873991 Score: 875
Period size: 317 Copynumber: 2.3 Consensus size: 305
83873268 TTACATAATT
* * * *
83873278 TAAACTATAATTATAATT--TTAATATATTAAAATTAATATTATCTCTTTTACAATTATATAATA
1 TAAACTATAATGATAATTAATCAATATTTTAAAATTAATATTATCTCTTTTACAATTATATAAGA
* * * * * **
83873341 AATTATTTAAT-ATATAAATT-ACAAAACATTAATTAATCTAAGCCTTAAACCCCTAACCCCTGC
66 AAATATTT-ATCATATAAATTAAAAAAACATTAATTAATCTAAACCCTAAACCCATAACCCCTAA
* * * * * *
83873404 CCCCTAAACCTTAAATCATAAACATAATCTCTAAACCCTAAAAACCTAACACTTAACCCCTAACC
130 ACCCTAAACCATAAATCATAAACATAAACCCTAAACCATAAAAACCTAACACTTAAACCCTAACC
* * *
83873469 CCTAAGCCTTAAACCCCAACCCTTAAACCATAAACCATAAACCATAATCTCTAAACCCATAATCC
195 CCTAAACATTAAACCCCAACCCTTAAACC---AACCATAAACCATAATCCCTAAACCCATAATCC
* *
83873534 ATAAACCTTAAAACAGTAACTCATACACTTTAAACCTTAAACCAAACCC
257 ATAAACCTTAAAACAGTAACTCATAAACATTAAACCTTAAACCAAACCC
*
83873583 TAAACTATAATGATAATTAATTCAATATTTTAAAATTAATATTATCTCTTTTATAATTATATAAG
1 TAAACTATAATGATAATTAA-TCAATATTTTAAAATTAATATTATCTCTTTTACAATTATATAAG
* *
83873648 AAAATATTTATCATATAAATTAAAAAAACATTAATTAATCTAAACCCTAAACTCATAATCCCTAA
65 AAAATATTTATCATATAAATTAAAAAAACATTAATTAATCTAAACCCTAAACCCATAACCCCTAA
* * * * *
83873713 ACCTTAAACCATAAATCCTAAAACATAAACCCTAAACCAT-GAACCACTAACCCTTAAACCCT-A
130 ACCCTAAACCATAAATCAT-AAACATAAACCCTAAACCATAAAAAC-CTAACACTTAAACCCTAA
*
83873776 CCACCTAAACATTAAACCCCAACCCTTAAACC-ACCGTAAAACCATAATCCCTAAACCCATAATC
193 CC-CCTAAACATTAAACCCCAACCCTTAAACCAACCAT-AAACCATAATCCCTAAACCCATAATC
* * *
83873840 CGTTAAACTTTAAAATAGTAACTCATAAACATTAAACCCTTAACCATATACCGTAAACCC
256 C-ATAAACCTTAAAACAGTAACTCATAAACATTAAA-CCTT----A-A-ACC--AAACCC
*
83873900 TAAACTATAATGATAATTAACTCAATATTTTAAAATTAATACTATCTCTTTTACAATTATATAAG
1 TAAACTATAATGATAATTAA-TCAATATTTTAAAATTAATATTATCTCTTTTACAATTATATAAG
*
83873965 AAAATATTTAACATATAAATTAAAAAA
65 AAAATATTTATCATATAAATTAAAAAA
83873992 CAATTAGTCA
Statistics
Matches: 352, Mismatches: 38, Indels: 26
0.85 0.09 0.06
Matches are distributed among these distances:
305 17 0.05
306 4 0.01
307 28 0.08
308 86 0.24
309 60 0.17
310 58 0.16
313 1 0.00
314 1 0.00
315 3 0.01
317 94 0.27
ACGTcount: A:0.46, C:0.23, G:0.02, T:0.30
Consensus pattern (305 bp):
TAAACTATAATGATAATTAATCAATATTTTAAAATTAATATTATCTCTTTTACAATTATATAAGA
AAATATTTATCATATAAATTAAAAAAACATTAATTAATCTAAACCCTAAACCCATAACCCCTAAA
CCCTAAACCATAAATCATAAACATAAACCCTAAACCATAAAAACCTAACACTTAAACCCTAACCC
CTAAACATTAAACCCCAACCCTTAAACCAACCATAAACCATAATCCCTAAACCCATAATCCATAA
ACCTTAAAACAGTAACTCATAAACATTAAACCTTAAACCAAACCC
Found at i:83874197 original size:40 final size:40
Alignment explanation
Indices: 83874067--83874211 Score: 150
Period size: 41 Copynumber: 3.6 Consensus size: 40
83874057 TTTTGTGGCA
* * *
83874067 TTTTTCAAAAAAACGCCGCTAAAGATTGAGCATTAGCGGCG
1 TTTTTCAAAAAAGCGCCGCTAAA-ATTGACCTTTAGCGGCG
* ** * *
83874108 TTTTTCAAAAAAGCGTCGCTAAAGGTGTACCTATAGCGGCC
1 TTTTTCAAAAAAGCGCCGCTAAAATTG-ACCTTTAGCGGCG
* *
83874149 TTTCTT-AAAAAAGCGCCGCTAATACTTGATCTTTAGCGGCG
1 TTT-TTCAAAAAAGCGCCGCTAA-AATTGACCTTTAGCGGCG
83874190 TTTTT-AAAAAAGCGCCGCTAAA
1 TTTTTCAAAAAAGCGCCGCTAAA
83874212 GCCACCAAAA
Statistics
Matches: 87, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
39 1 0.01
40 20 0.23
41 61 0.70
42 5 0.06
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (40 bp):
TTTTTCAAAAAAGCGCCGCTAAAATTGACCTTTAGCGGCG
Found at i:83874320 original size:133 final size:135
Alignment explanation
Indices: 83874134--83874391 Score: 423
Period size: 133 Copynumber: 1.9 Consensus size: 135
83874124 CGCTAAAGGT
*
83874134 GTACCTATAGCGGCCTTTCTTAAAAAAGCGCCGCTAATACTTGATCTTTAGCGGCGTTTTTAAAA
1 GTACATATAGCGGCCTTTCTTAAAAAAGCGCCGCTAATACTTGATCTTTAGCGGCGTTTTT-AAA
*
83874199 AAGCGCCGCTAAAGCCACCAAAAGCTCAATAC-AAACGATGGAGTTTTGCAAAATT-TTTTGCAG
65 AAGCGCCGCTAAAGCCACCAAAAGCTCAATACAAAACGACGGAGTTTTGCAAAATTCTTTTGCAG
83874262 CATCGC
130 CATCGC
* * *
83874268 GTACATATAGCGGCGTTT-TTTAAAAAGTGCCGCTAATACTTGATCTTTAGCGGCGTTTTTAAAA
1 GTACATATAGCGGCCTTTCTTAAAAAAGCGCCGCTAATACTTGATCTTTAGCGGCGTTTTTAAAA
**
83874332 AGCGCCGCTAAAGCCATTAAAAGCTCAATACAAAACGACGGAGTTTTGCAAAATTCTTTT
66 AGCGCCGCTAAAGCCACCAAAAGCTCAATACAAAACGACGGAGTTTTGCAAAATTCTTTT
83874392 TCGGCGTTTT
Statistics
Matches: 115, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
132 33 0.29
133 62 0.54
134 20 0.17
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.29
Consensus pattern (135 bp):
GTACATATAGCGGCCTTTCTTAAAAAAGCGCCGCTAATACTTGATCTTTAGCGGCGTTTTTAAAA
AGCGCCGCTAAAGCCACCAAAAGCTCAATACAAAACGACGGAGTTTTGCAAAATTCTTTTGCAGC
ATCGC
Found at i:83889713 original size:12 final size:12
Alignment explanation
Indices: 83889696--83889724 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
83889686 TTTAAATTAG
83889696 TTAATCTTATGT
1 TTAATCTTATGT
83889708 TTAATCTTATGT
1 TTAATCTTATGT
83889720 TTAAT
1 TTAAT
83889725 GAATGTGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.59
Consensus pattern (12 bp):
TTAATCTTATGT
Found at i:83892977 original size:11 final size:12
Alignment explanation
Indices: 83892951--83892980 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
83892941 TCGCCCATAT
83892951 TAATTTTTATAC
1 TAATTTTTATAC
83892963 TAATTTTTATA-
1 TAATTTTTATAC
83892974 TAATTTT
1 TAATTTT
83892981 AAAAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (12 bp):
TAATTTTTATAC
Found at i:83893005 original size:18 final size:18
Alignment explanation
Indices: 83892982--83893021 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
83892972 TATAATTTTA
*
83892982 AAAAATA-TATAATACATC
1 AAAAATACTA-AACACATC
83893000 AAAAATACTAAACACATC
1 AAAAATACTAAACACATC
83893018 AAAA
1 AAAA
83893022 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.65, C:0.15, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATACTAAACACATC
Found at i:83897844 original size:28 final size:28
Alignment explanation
Indices: 83897791--83897876 Score: 136
Period size: 28 Copynumber: 3.0 Consensus size: 28
83897781 CACATTGTGC
83897791 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
83897820 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
83897848 GATACTGGTGTGTTTTGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
83897876 T
1 T
83897877 GGTGTGTTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
28 34 0.65
29 18 0.35
ACGTcount: A:0.19, C:0.03, G:0.30, T:0.48
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:83897886 original size:23 final size:26
Alignment explanation
Indices: 83897794--83897888 Score: 115
Period size: 28 Copynumber: 3.6 Consensus size: 26
83897784 ATTGTGCTAT
83897794 TCTGGTGTGTTTTGGATGGATTATATTA
1 TCTGGTGTGTTTTGGA-GGATTATA-TA
*
83897822 TTCTGGTGTGTTTGGGAGGATTATATGA
1 -TCTGGTGTGTTTTGGAGGATTATAT-A
83897850 TACTGGTGTGTTTTGGAGGA-T-TATA
1 T-CTGGTGTGTTTTGGAGGATTATATA
83897875 T-TGGTGTGTTTTGG
1 TCTGGTGTGTTTTGG
83897889 TTGGACATTT
Statistics
Matches: 62, Mismatches: 2, Indels: 10
0.84 0.03 0.14
Matches are distributed among these distances:
23 13 0.21
25 2 0.03
26 3 0.05
27 3 0.05
28 26 0.42
29 15 0.24
ACGTcount: A:0.16, C:0.03, G:0.34, T:0.47
Consensus pattern (26 bp):
TCTGGTGTGTTTTGGAGGATTATATA
Found at i:83897901 original size:23 final size:23
Alignment explanation
Indices: 83897853--83897908 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
83897843 TATATGATAC
*
83897853 TGGTGTGTTTTGGAGGATTATAT
1 TGGTGTGTTTTGGAGGATCATAT
* *
83897876 TGGTGTGTTTTGGTTGGA-CATTT
1 TGGTGTGTTTTGG-AGGATCATAT
83897899 TGGTGTGTTT
1 TGGTGTGTTT
83897909 GGATGGAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 26 0.90
24 3 0.10
ACGTcount: A:0.11, C:0.02, G:0.36, T:0.52
Consensus pattern (23 bp):
TGGTGTGTTTTGGAGGATCATAT
Found at i:83898117 original size:23 final size:23
Alignment explanation
Indices: 83898091--83898165 Score: 70
Period size: 21 Copynumber: 3.5 Consensus size: 23
83898081 AGACACTTTA
83898091 TGTGTCGTATTTCAGGCACCTTG
1 TGTGTCGTATTTCAGGCACCTTG
* * *
83898114 TGTGTCGCA--GCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTTG
*
83898135 TGTGTCG--TTTCAGGCA-CTTA
1 TGTGTCGTATTTCAGGCACCTTG
*
83898155 TGTGTAGTATT
1 TGTGTCGTATT
83898166 CTGATCAGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
20 8 0.20
21 23 0.56
22 2 0.05
23 8 0.20
ACGTcount: A:0.15, C:0.21, G:0.28, T:0.36
Consensus pattern (23 bp):
TGTGTCGTATTTCAGGCACCTTG
Found at i:83903239 original size:19 final size:19
Alignment explanation
Indices: 83903215--83903261 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
83903205 AAAGGATGCG
83903215 AGAAAAAGAAAT-CAAGAGA
1 AGAAAAAGAAATACAAG-GA
*
83903234 AG-AAAA-AAATACATGGA
1 AGAAAAAGAAATACAAGGA
83903251 AGAAAAAGAAA
1 AGAAAAAGAAA
83903262 AGGAAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
17 8 0.33
18 11 0.46
19 5 0.21
ACGTcount: A:0.70, C:0.04, G:0.19, T:0.06
Consensus pattern (19 bp):
AGAAAAAGAAATACAAGGA
Found at i:83903354 original size:18 final size:20
Alignment explanation
Indices: 83903331--83903378 Score: 66
Period size: 18 Copynumber: 2.5 Consensus size: 20
83903321 TCATGTGAGC
83903331 AAGAAAAGAAAG-TTGAA-A
1 AAGAAAAGAAAGATTGAAGA
*
83903349 AAG-AAAGAGAGATTGAAGA
1 AAGAAAAGAAAGATTGAAGA
83903368 AAGAAAAGAAA
1 AAGAAAAGAAA
83903379 ATGTCCAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 7 0.28
18 8 0.32
19 4 0.16
20 6 0.24
ACGTcount: A:0.67, C:0.00, G:0.25, T:0.08
Consensus pattern (20 bp):
AAGAAAAGAAAGATTGAAGA
Found at i:83911193 original size:14 final size:14
Alignment explanation
Indices: 83911170--83911199 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
83911160 AATGATTTTC
83911170 AGAAAAAAAAAGAA
1 AGAAAAAAAAAGAA
*
83911184 AGAAAGAAAAAGAA
1 AGAAAAAAAAAGAA
83911198 AG
1 AG
83911200 GGAAATATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (14 bp):
AGAAAAAAAAAGAA
Found at i:83915393 original size:11 final size:11
Alignment explanation
Indices: 83915375--83915413 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
83915365 CAACACACAC
83915375 ACAAAAAAAAA
1 ACAAAAAAAAA
*
83915386 AAAAAAAAAAA
1 ACAAAAAAAAA
*
83915397 ACAAAACAAAA
1 ACAAAAAAAAA
83915408 ACAAAA
1 ACAAAA
83915414 TTGAATTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (11 bp):
ACAAAAAAAAA
Found at i:83919953 original size:18 final size:18
Alignment explanation
Indices: 83919930--83919995 Score: 50
Period size: 18 Copynumber: 3.6 Consensus size: 18
83919920 GGTCTTATAT
83919930 TAATTTTATAATTAATTA
1 TAATTTTATAATTAATTA
83919948 TAATTTCT-TAATT--TTA
1 TAATTT-TATAATTAATTA
*
83919964 TAACCATTTATAACTTATATT-
1 TAA--TTTTATAA-TTA-ATTA
83919985 TAATTTTATAA
1 TAATTTTATAA
83919996 ATACTTTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 15
0.69 0.04 0.27
Matches are distributed among these distances:
16 6 0.16
17 1 0.03
18 16 0.42
19 10 0.26
21 3 0.08
22 2 0.05
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (18 bp):
TAATTTTATAATTAATTA
Found at i:83919974 original size:26 final size:29
Alignment explanation
Indices: 83919923--83919995 Score: 82
Period size: 26 Copynumber: 2.7 Consensus size: 29
83919913 CTAAAATGGT
**
83919923 CTTATA-TTAATTTTATAATTAATTATAA
1 CTTATACTTAATTTTATAACCAATTATAA
*
83919951 -TT-T-CTTAATTTTATAACCATTTATAA
1 CTTATACTTAATTTTATAACCAATTATAA
*
83919977 CTTATATTTAATTTTATAA
1 CTTATACTTAATTTTATAA
83919996 ATACTTTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
26 20 0.54
27 4 0.11
28 1 0.03
29 12 0.32
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (29 bp):
CTTATACTTAATTTTATAACCAATTATAA
Found at i:83923493 original size:22 final size:24
Alignment explanation
Indices: 83923433--83923502 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 24
83923423 TAGATATAAA
*
83923433 AAAAATATATGTACATAATATAGTGT
1 AAAAATATA--TACATAATATAATGT
*
83923459 AAAAAATACATACATAATATAAT-T
1 -AAAAATATATACATAATATAATGT
83923483 -AAAATATATACATAATATAA
1 AAAAATATATACATAATATAA
83923503 CATGTAGAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
22 19 0.47
24 1 0.03
25 12 0.30
27 8 0.20
ACGTcount: A:0.59, C:0.06, G:0.04, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:83923546 original size:25 final size:25
Alignment explanation
Indices: 83923518--83923651 Score: 75
Period size: 25 Copynumber: 5.5 Consensus size: 25
83923508 AGAAAAAAAA
83923518 ATATAAATAATATAGTATTAAAGAT
1 ATATAAATAATATAGTATTAAAGAT
* * *
83923543 ATATACATAAAATAGTA-TAATATAT
1 ATATAAATAATATAGTATTAA-AGAT
** * *
83923568 ATATACGTAATATAGAATT-TAGA-
1 ATATAAATAATATAGTATTAAAGAT
** *
83923591 ATATACCTAATATA-T-TAAAAGAAT
1 ATATAAATAATATAGTATTAAAG-AT
* *
83923615 ATATATATATAATATAATATTAAA-AA
1 ATATA-A-ATAATATAGTATTAAAGAT
83923641 ATAT-AATAATA
1 ATATAAATAATA
83923652 ACAAAAAAAA
Statistics
Matches: 84, Mismatches: 16, Indels: 20
0.70 0.13 0.17
Matches are distributed among these distances:
21 1 0.01
22 2 0.02
23 20 0.24
24 11 0.13
25 32 0.38
26 13 0.15
27 1 0.01
28 4 0.05
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (25 bp):
ATATAAATAATATAGTATTAAAGAT
Found at i:83923646 original size:15 final size:15
Alignment explanation
Indices: 83923602--83923648 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
83923592 TATACCTAAT
83923602 ATATTAAAAGAATAT-
1 ATATTAAAA-AATATA
* *
83923617 ATA-TATATAATATA
1 ATATTAAAAAATATA
83923631 ATATTAAAAAATATA
1 ATATTAAAAAATATA
83923646 ATA
1 ATA
83923649 ATAACAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 5 0.19
14 6 0.23
15 15 0.58
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (15 bp):
ATATTAAAAAATATA
Found at i:83923972 original size:16 final size:16
Alignment explanation
Indices: 83923934--83923972 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
83923924 ATCTCCAAAA
*
83923934 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
83923950 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
83923966 AATAACT
1 AAAAACT
83923973 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:83924162 original size:21 final size:21
Alignment explanation
Indices: 83924137--83924180 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
83924127 GTGGTGGTGG
83924137 AGCAAGTGTGGCTAATGGAGT
1 AGCAAGTGTGGCTAATGGAGT
*
83924158 AGCAAGTGTGGCTAGTGGAGT
1 AGCAAGTGTGGCTAATGGAGT
83924179 AG
1 AG
83924181 GTGGTGGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.09, G:0.41, T:0.23
Consensus pattern (21 bp):
AGCAAGTGTGGCTAATGGAGT
Found at i:83924192 original size:30 final size:30
Alignment explanation
Indices: 83924158--83924247 Score: 153
Period size: 30 Copynumber: 3.0 Consensus size: 30
83924148 CTAATGGAGT
*
83924158 AGCAAGTGTGGCTAGTGGAGTAGGTGGTGG
1 AGCAAGTGTGGCTAGTGGAGTTGGTGGTGG
83924188 AGCAAGTGTGGCTAGTGGAGTTGGTGGTGG
1 AGCAAGTGTGGCTAGTGGAGTTGGTGGTGG
* *
83924218 TGCAAGTGTGACTAGTGGAGTTGGTGGTGG
1 AGCAAGTGTGGCTAGTGGAGTTGGTGGTGG
83924248 CAAAGGCTAG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 57 1.00
ACGTcount: A:0.18, C:0.07, G:0.49, T:0.27
Consensus pattern (30 bp):
AGCAAGTGTGGCTAGTGGAGTTGGTGGTGG
Found at i:83925020 original size:87 final size:87
Alignment explanation
Indices: 83924881--83925434 Score: 440
Period size: 87 Copynumber: 6.3 Consensus size: 87
83924871 TTAACTCATT
* * *
83924881 TCTCGCAATATGAATTGACTCTTT-AAAAC-TAAACATT-AAAAACAGAAATTGAAAATAGCTCA
1 TCTCGCAATATGAGTTGA-TTTTTGAAAACAT-AA-ATTGAAAAACAGAAATTGAAAATACCTCA
* *
83924943 GCACGTGAGTCAAGGCTCAACTCACT
63 G-ACGTGAGTCGAGGCTCAACTCACC
* * * **
83924969 TCTTGCAATATAAGTTGATTTTT-AAAACA-AAATTTGTAAAACAGATTTTGAAAATACCTCAGT
1 TCTCGCAATATGAGTTGATTTTTGAAAACATAAA-TTGAAAAACAGAAATTGAAAATACCTCAG-
* **
83925032 ATGTGACCCGAGGCTCAACTCACC
64 ACGTGAGTCGAGGCTCAACTCACC
* ** * *
83925056 TCTCGTAATATGAGTTGATTTTTGCAAAGTATAAATTGAAAAAAAAAATCAATTGAAAATACCTC
1 TCTCGCAATATGAGTTGATTTTTG-AAAACATAAATTG-AAAAACAGA--AATTGAAAATACCTC
* *
83925121 -GGCGTGTAATCTGAGGCTCAACTCACC
62 AGACGTG-AGTC-GAGGCTCAACTCACC
*
83925148 TCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTG--AAA-AGAAATTGAAAATATCTCA
1 TCTCGCAATATGAGTTGA--TTTTTGA-AAACATAAATTGAAAAACAGAAATTGAAAATACCTCA
*
83925210 G-CGT--GTCCTGAGGCTGAACTCACC
63 GACGTGAGT-C-GAGGCTCAACTCACC
*
83925234 TCTCGCAATATGAGTTGATTTTTTGGAAAAACA-AAATTTGAAAAACAGAATTTGAAAATACCTC
1 TCTCGCAATATGAGTTGA-TTTTT-G-AAAACATAAA-TTGAAAAACAGAAATTGAAAATACCTC
*
83925298 AG-CGTGTGAGTCAAGGCTCAACTCACC
62 AGAC--GTGAGTCGAGGCTCAACTCACC
* * * * * *
83925325 ACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCA
1 TCTCGCAATATGAGTTGA--TTTTTGAAA-ACATAAATTGAAAAACAGAAATTGAAAATACCTCA
* * *
83925390 G-CGT--CTTGAGGTTCAACTCACC
63 GACGTGAGTCGAGGCTCAACTCACC
* *
83925412 TCTCGCAATATAAGCTGATTTTT
1 TCTCGCAATATGAGTTGATTTTT
83925435 TTTGAAAGAC
Statistics
Matches: 386, Mismatches: 51, Indels: 61
0.78 0.10 0.12
Matches are distributed among these distances:
85 16 0.04
86 47 0.12
87 101 0.26
88 35 0.09
89 29 0.08
90 17 0.04
91 67 0.17
92 55 0.14
93 3 0.01
94 16 0.04
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (87 bp):
TCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAAAAACAGAAATTGAAAATACCTCAGAC
GTGAGTCGAGGCTCAACTCACC
Found at i:83925291 original size:13 final size:14
Alignment explanation
Indices: 83925259--83925291 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
83925249 TGATTTTTTG
83925259 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
83925273 GAAAAACAGAATTT
1 GAAAAACAAAATTT
83925287 GAAAA
1 GAAAA
83925292 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:83925642 original size:75 final size:75
Alignment explanation
Indices: 83925362--83926340 Score: 1307
Period size: 75 Copynumber: 13.3 Consensus size: 75
83925352 AACACAGAAA
* * * * *
83925362 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATAA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
83925425 GCTGATTTTTT
66 GTTGA-TTTTT
* * *
83925436 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
83925501 GTTGA--TTT
66 GTTGATTTTT
* * * * *
83925509 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
83925572 GTTGATTTTT
66 GTTGATTTTT
83925582 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
83925647 GCTGATTTTT
66 GTTGATTTTT
* * *
83925657 TT-AAAGACAGAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
83925721 GTTGA-TTTT
66 GTTGATTTTT
* * * * *
83925730 TTGACAAACAAAAACT-AAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATG
1 TTGAAAAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATG
83925792 AGTTGATTTTT
65 AGTTGATTTTT
*
83925803 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAATTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
83925868 GCTGATTTTT
66 GTTGATTTTT
* * *
83925878 TT-AAAAGATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTAGCAATATG
1 TTGAAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATG
83925942 AGTTGA--TTT
65 AGTTGATTTTT
* * * * * *
83925951 TTGACAAATAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
83926014 GTTGATTTTT
66 GTTGATTTTT
*
83926024 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
83926089 GCTGATTTTT
66 GTTGATTTTT
* *
83926099 TT-AAAAGACAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATG
83926163 AGTTGA--TTT
65 AGTTGATTTTT
* * * * * * * *
83926172 TTGACAAACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
83926237 GTTGA-TTTT
66 GTTGATTTTT
* * *
83926246 TTGAAAAACTGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
83926311 GTTGATTTTT
66 GTTGATTTTT
* * *
83926321 TT-AGAAACATAAATTAAAAA
1 TTGAAAAACAGAAATTGAAAA
83926341 AATGAAAATT
Statistics
Matches: 798, Mismatches: 85, Indels: 44
0.86 0.09 0.05
Matches are distributed among these distances:
71 72 0.09
72 39 0.05
73 197 0.25
74 200 0.25
75 255 0.32
76 35 0.04
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:83925801 original size:221 final size:221
Alignment explanation
Indices: 83925362--83926340 Score: 1662
Period size: 221 Copynumber: 4.4 Consensus size: 221
83925352 AACACAGAAA
* * * * *
83925362 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATAA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
83925425 GCTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
66 GCTGA-TTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
*
83925490 TCGTAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACT
130 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACT
83925555 CACCTATCGCAATATGAGTTGATTTTT
195 CACCTATCGCAATATGAGTTGATTTTT
83925582 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
83925647 GCTGATTTTTTT-AAAGACAGAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
66 GCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
83925711 CGCAATATGAGTTGATTTTTTGACAAACAAAAACTAAAATTACCTCAGCGTCTTGAGGTTCAACT
131 CGCAATATGAGTTGA-TTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACT
83925776 CACCTATCGCAATATGAGTTGATTTTT
195 CACCTATCGCAATATGAGTTGATTTTT
*
83925803 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAATTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
83925868 GCTGATTTTTTTAAAAGATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
66 GCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
83925933 AGCAATATGAGTTGATTTTTGACAAATAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
131 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
83925998 ACCTATCGCAATATGAGTTGATTTTT
196 ACCTATCGCAATATGAGTTGATTTTT
*
83926024 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
83926089 GCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCACCTCT
66 GCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
83926154 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAAC
131 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAAC
83926219 TCACCTATCGCAATATGAGTTGA-TTTT
194 TCACCTATCGCAATATGAGTTGATTTTT
* * *
83926246 TTGAAAAACTGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* * * *
83926311 GTTGATTTTTTTAGAA-ACATAAATTAAAAA
66 GCTGATTTTTTTAAAAGACAGAAATTGAAAA
83926341 AATGAAAATT
Statistics
Matches: 721, Mismatches: 32, Indels: 11
0.94 0.04 0.01
Matches are distributed among these distances:
220 89 0.12
221 415 0.58
222 181 0.25
223 36 0.05
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (221 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
GCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
ACCTATCGCAATATGAGTTGATTTTT
Found at i:83925901 original size:296 final size:295
Alignment explanation
Indices: 83925362--83926340 Score: 1285
Period size: 296 Copynumber: 3.3 Consensus size: 295
83925352 AACACAGAAA
* * * *
83925362 TTGAAGAACAGAAA-TGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATA
1 TTGAA-AACAGAAATTGG-AAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
* * *
83925424 AGCTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT
64 AGTTGA-TTTTTTTGAAA-ACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCT
* * * * *
83925489 CTCGTAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTT
127 CTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTT
*
83925550 CAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTG
192 CAACTCACCTCTCGCAATATGAGTTGATTTTTTT-AAAAA-AGAAATTGAAAATACCTCAACGTG
* *
83925615 TCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTT
255 TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
83925656 TTTAAAGACAGAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
83925721 GTTGA-TTTTTTGACAAACAAAAACT-AAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTA
65 GTTGATTTTTTTGA-AAACAAAAATTGAAAA-TACCTCAACGTGTCTTGAGGTTCAACTCACCTC
83925782 TCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTC
128 TCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTC
* *
83925847 AATTCACCTCTCGCAATATGAGCTGATTTTTTTAAAAGATAGAAATTGAAAATACCTCAACGTGT
193 AACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAA-A-AGAAATTGAAAATACCTCAACGTGT
*
83925912 CTTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTT
256 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * * * *
83925951 TTGACAAATAAAAATT-GAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATG
1 TTGA-AAACAGAAATTGGAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
83926013 AGTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTC
64 AGTTGATTTTTTTG-AAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTC
* * *
83926078 TCGCAATATGAGCTGATTTTTTT-AAAAGACAGAAATTGAAAATACCTCAACGTGTCTTAAGGCT
128 TCGCAATATGAGTTGATTTTTTTGAAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTT
* * * *
83926142 CAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAAACAA-AAATTGAAATTACCTCAGCATG
192 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTA-AAA-AAGAAATTGAAAATACCTCAACGTG
* *
83926205 TCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTT
255 TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * *
83926246 TTGAAAAACTGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTG-AAAACAGAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* *
83926311 GTTGATTTTTTT-AGAAACATAAATTAAAAA
65 GTTGATTTTTTTGA-AAACAAAAATTGAAAA
83926341 AATGAAAATT
Statistics
Matches: 604, Mismatches: 55, Indels: 50
0.85 0.08 0.07
Matches are distributed among these distances:
292 36 0.06
293 43 0.07
294 148 0.25
295 68 0.11
296 266 0.44
297 43 0.07
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (295 bp):
TTGAAAACAGAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAAGAAATTGAAAATACCTCAACGTGTCTTGA
GGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
Found at i:83926431 original size:89 final size:86
Alignment explanation
Indices: 83926249--83926503 Score: 239
Period size: 89 Copynumber: 2.8 Consensus size: 86
83926239 TGATTTTTTG
* *
83926249 AAAAACTG-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGT
1 AAAAACTGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGT
* *
83926313 TGATTTTTTTAGAAACATAAATTAA
66 TGA----TTGAGAAACAGAAATTAA
* *
83926338 AAAAA-TGAAAATTGAAAATACCTCAGTGTGTCCTGAGGCTTAACTCACTTCTCGCAATATGAG-
1 AAAAACTGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGT
*
83926401 TGATTGA-AAAGCAGAATTTGTAA
66 TGATTGAGAAA-CAGAA-AT-TAA
* * *
83926424 GGCAAAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCG
1 ---AAAAACTG------A-AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCG
83926489 CAATATGAGTTGATT
56 CAATATGAGTTGATT
83926504 TTTGAAAAAA
Statistics
Matches: 139, Mismatches: 11, Indels: 23
0.80 0.06 0.13
Matches are distributed among these distances:
83 3 0.02
84 7 0.05
85 1 0.01
86 3 0.02
88 5 0.04
89 61 0.44
90 2 0.01
96 1 0.01
97 51 0.37
98 5 0.04
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (86 bp):
AAAAACTGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGT
TGATTGAGAAACAGAAATTAA
Found at i:83939471 original size:20 final size:20
Alignment explanation
Indices: 83939442--83939488 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
83939432 TCTGCTCATC
*
83939442 TGTCTTTTCTTTGTATCTTG
1 TGTCTCTTCTTTGTATCTTG
83939462 TGTCTCTTCTTTGTATCTTG
1 TGTCTCTTCTTTGTATCTTG
83939482 TGTCTCT
1 TGTCTCT
83939489 ATCTCAACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.04, C:0.19, G:0.15, T:0.62
Consensus pattern (20 bp):
TGTCTCTTCTTTGTATCTTG
Found at i:83941781 original size:46 final size:44
Alignment explanation
Indices: 83941677--83941784 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
83941667 TGTCTTTGAC
** * * *
83941677 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
83941721 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
83941767 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
83941785 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:83944611 original size:23 final size:23
Alignment explanation
Indices: 83944585--83944749 Score: 179
Period size: 23 Copynumber: 7.2 Consensus size: 23
83944575 GCTACATCTC
*
83944585 AGTGGTAGCTTCGGCTACAGTAT
1 AGTGGTAGCTTCGGCTACAATAT
*
83944608 AGTGGTAGCTTCGGCTACAATAC
1 AGTGGTAGCTTCGGCTACAATAT
* * *
83944631 AATGGTAGCTTCAGCTAC-ATCT
1 AGTGGTAGCTTCGGCTACAATAT
* *
83944653 CAGTGGTAGCTTCGGCTATAATAC
1 -AGTGGTAGCTTCGGCTACAATAT
* * *
83944677 AATGGTAGCTTTGGCTACAATAC
1 AGTGGTAGCTTCGGCTACAATAT
**
83944700 AGTGGTAGCTTCGGCTACGTTAT
1 AGTGGTAGCTTCGGCTACAATAT
* * *
83944723 AGTGATAGCTTCGGCTATATTAT
1 AGTGGTAGCTTCGGCTACAATAT
83944746 AGTG
1 AGTG
83944750 TGACACTTTG
Statistics
Matches: 118, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
22 2 0.02
23 114 0.97
24 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (23 bp):
AGTGGTAGCTTCGGCTACAATAT
Found at i:83944686 original size:69 final size:69
Alignment explanation
Indices: 83944575--83944741 Score: 228
Period size: 69 Copynumber: 2.4 Consensus size: 69
83944565 GAATCTATAG
* * * *
83944575 GCTACATCTCAGTGGTAGCTTCGGCTACAGTATAGTGGTAGCTTCGGCTACAATACAATGGTAGC
1 GCTACATCTCAGTGGTAGCTTCGGCTATAATACAATGGTAGCTTCGGCTACAATACAATGGTAGC
83944640 TTCA
66 TTCA
* *
83944644 GCTACATCTCAGTGGTAGCTTCGGCTATAATACAATGGTAGCTTTGGCTACAATACAGTGGTAGC
1 GCTACATCTCAGTGGTAGCTTCGGCTATAATACAATGGTAGCTTCGGCTACAATACAATGGTAGC
*
83944709 TTCG
66 TTCA
* * *
83944713 GCTACGT-TATAGTGATAGCTTCGGCTATA
1 GCTACATCT-CAGTGGTAGCTTCGGCTATA
83944742 TTATAGTGTG
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
68 1 0.01
69 86 0.99
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (69 bp):
GCTACATCTCAGTGGTAGCTTCGGCTATAATACAATGGTAGCTTCGGCTACAATACAATGGTAGC
TTCA
Found at i:83952389 original size:23 final size:21
Alignment explanation
Indices: 83952344--83952390 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
83952334 CATACCCTCA
83952344 TGTGACTAAGGGACACACCTG
1 TGTGACTAAGGGACACACCTG
* *
83952365 TGTGACTAAGGGTCACACCCG
1 TGTGACTAAGGGACACACCTG
83952386 TGTGA
1 TGTGA
83952391 TTAGGCCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (21 bp):
TGTGACTAAGGGACACACCTG
Found at i:83954323 original size:42 final size:42
Alignment explanation
Indices: 83954277--83954394 Score: 146
Period size: 43 Copynumber: 2.8 Consensus size: 42
83954267 TAGGGTTAGT
83954277 TGAGATTACGTGTAAGACCATATCTGGGATATGACATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGACATCGATA
** * * *
83954319 TGAGATTTTGTGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATA-TGACATCGATA
** * *
83954362 TGAGATCCCATGTAAGACCATATCTAGGATATG
1 TGAGATTACGTGTAAGACCATATCTGGGATATG
83954395 GCATTGGTAT
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
42 29 0.46
43 34 0.54
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGACATCGATA
Found at i:83954508 original size:20 final size:20
Alignment explanation
Indices: 83954480--83954526 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
83954470 CGGTAAAGTT
*
83954480 TAAGTTGTGAAAGACTATGG
1 TAAGTTGTGAAACACTATGG
* *
83954500 TATGTTGTGAAACATTATGG
1 TAAGTTGTGAAACACTATGG
83954520 TAAGTTG
1 TAAGTTG
83954527 CAAGTTTGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.32, C:0.04, G:0.28, T:0.36
Consensus pattern (20 bp):
TAAGTTGTGAAACACTATGG
Found at i:83956557 original size:19 final size:19
Alignment explanation
Indices: 83956533--83956572 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
83956523 CTCGTTCCCC
*
83956533 TTCTTTTTGTTCTTTTCTT
1 TTCTTTTTGTTCTCTTCTT
83956552 TTCTTTTTGTTCTCTTCTT
1 TTCTTTTTGTTCTCTTCTT
83956571 TT
1 TT
83956573 TCGCCATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.00, C:0.17, G:0.05, T:0.78
Consensus pattern (19 bp):
TTCTTTTTGTTCTCTTCTT
Found at i:83957998 original size:22 final size:22
Alignment explanation
Indices: 83957960--83958024 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
83957950 GGGTAGGAAA
*
83957960 CTGCATTTG-ATTCTGATCTATT
1 CTGCATCTGTATT-TGATCTATT
*
83957982 CTGCATCTGTATTTGATCTGTT
1 CTGCATCTGTATTTGATCTATT
* *
83958004 CTGCATCT-TATCTGAACTATT
1 CTGCATCTGTATTTGATCTATT
83958025 ACGGTTATAC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
21 10 0.27
22 24 0.65
23 3 0.08
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (22 bp):
CTGCATCTGTATTTGATCTATT
Found at i:83964032 original size:28 final size:28
Alignment explanation
Indices: 83963978--83964032 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
83963968 GTATACATAT
*
83963978 GTGAAATTGAATTGTGTAATGATTTGTG
1 GTGAAATTGAATTGTGTAATGAATTGTG
* *
83964006 GTGAATTTGAAATTGTG-ATTGAATTGT
1 GTGAAATTG-AATTGTGTAATGAATTGT
83964033 TATTGCGATG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 16 0.70
29 7 0.30
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (28 bp):
GTGAAATTGAATTGTGTAATGAATTGTG
Found at i:83964273 original size:37 final size:38
Alignment explanation
Indices: 83964231--83964326 Score: 97
Period size: 40 Copynumber: 2.5 Consensus size: 38
83964221 GGATGAATTT
* *
83964231 GATGAGGCGTTGGTCGCCAC-TTTGCTTCG-GCTTAGCC
1 GATGAGGCGTTGGTCGCCACTTTTACTTCGAAC-TAGCC
** * *
83964268 GATGAGATGTTGGTCGTCACTTATTTACTTCGAACTATCC
1 GATGAGGCGTTGGTCGCCAC-T-TTTACTTCGAACTAGCC
83964308 GATGAGGCGTTGGTCGCCA
1 GATGAGGCGTTGGTCGCCA
83964327 TTCTGGTGTG
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
37 17 0.37
40 28 0.61
41 1 0.02
ACGTcount: A:0.17, C:0.23, G:0.29, T:0.31
Consensus pattern (38 bp):
GATGAGGCGTTGGTCGCCACTTTTACTTCGAACTAGCC
Found at i:83964680 original size:13 final size:13
Alignment explanation
Indices: 83964658--83964707 Score: 73
Period size: 13 Copynumber: 3.8 Consensus size: 13
83964648 TGATAGTTTG
*
83964658 GTATGAATTTATAT
1 GTATG-ATTTGTAT
83964672 GTATGATTTGTAT
1 GTATGATTTGTAT
*
83964685 GTATGATTTGCAT
1 GTATGATTTGTAT
83964698 GTATGATTTG
1 GTATGATTTG
83964708 CTAATTATCT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
13 29 0.85
14 5 0.15
ACGTcount: A:0.26, C:0.02, G:0.22, T:0.50
Consensus pattern (13 bp):
GTATGATTTGTAT
Found at i:83968872 original size:48 final size:48
Alignment explanation
Indices: 83968813--83968980 Score: 216
Period size: 48 Copynumber: 3.5 Consensus size: 48
83968803 AGCTGACGCT
83968813 ATGTCCCAGACA-GTTCTTACACTAGCTTGTATATCTCGAGGCCGATGC
1 ATGTCCCAGACATG-TCTTACACTAGCTTGTATATCTCGAGGCCGATGC
* * ** * * *
83968861 ATGTCCTAGACATGTCTTACACTAGC-TCT-CGTCTCAATGTCGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATGC
* *
83968907 ATGTCCCAGACATGTCTTACAATGGCTTGTATATCTCGAGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATGC
*
83968955 ATGTACCAGACATGTCTTACACTAGC
1 ATGTCCCAGACATGTCTTACACTAGC
83968981 ACACATATCA
Statistics
Matches: 98, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 35 0.36
47 4 0.04
48 58 0.59
49 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (48 bp):
ATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATGC
Found at i:83972319 original size:20 final size:19
Alignment explanation
Indices: 83972283--83972332 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
83972273 TATAACAACT
*
83972283 CACATTTTCAATTATTTCA
1 CACATTTACAATTATTTCA
*
83972302 CACATTTACAACTTATTTTA
1 CACATTTACAA-TTATTTCA
83972322 CA-ACTTTACAA
1 CACA-TTTACAA
83972333 AATAGCCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.36, C:0.22, G:0.00, T:0.42
Consensus pattern (19 bp):
CACATTTACAATTATTTCA
Found at i:83974370 original size:80 final size:80
Alignment explanation
Indices: 83974176--83974386 Score: 302
Period size: 80 Copynumber: 2.7 Consensus size: 80
83974166 ATTCGGATTG
* *
83974176 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATGTCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAAGCA
*
83974240 TTTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
* * * *
83974255 ATAACCGGGCCAAGTCTCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAAGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAAGCA
83974320 ATTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
* **
83974335 ATAACTGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAA
83974387 ACCCCGAAGG
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
79 21 0.18
80 95 0.82
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAAGCA
ATTGTGCGAGTTACT
Found at i:83974377 original size:40 final size:40
Alignment explanation
Indices: 83974176--83974363 Score: 297
Period size: 40 Copynumber: 4.7 Consensus size: 40
83974166 ATTCGGATTG
83974176 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
**
83974215 ATGTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
83974255 ATAACCGGGCCAAGTCTCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
83974295 ATAACCGGGCTAAGTCCCGAAAGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
83974335 ATAACTGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
83974364 AACGAGTAGC
Statistics
Matches: 135, Mismatches: 13, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 12 0.09
40 123 0.91
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:83984494 original size:47 final size:47
Alignment explanation
Indices: 83984433--83984781 Score: 509
Period size: 47 Copynumber: 7.4 Consensus size: 47
83984423 CTTCGGGACT
* * * *
83984433 TATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCT
1 TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
* * * *
83984480 TATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGTCT
1 TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
* * *
83984527 TATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
* * *
83984574 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGACCC
1 TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
*
83984621 TATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
* *
83984668 TATCACATATATATATACTTTCACATTCATCACGTTGGCCACTCGGCCC
1 TATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
*
83984717 TATCACATATATATACTTTCACATTCATCACATTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
*
83984764 TATCACATATATATACTT
1 TATCACATATATACACTT
83984782 GTACATCAAT
Statistics
Matches: 283, Mismatches: 17, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 237 0.84
49 46 0.16
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
Found at i:83987316 original size:39 final size:40
Alignment explanation
Indices: 83987262--83987338 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
83987252 AACCCAAGTA
* * *
83987262 CCTTCGGGATTTAG-CCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTAGCACAAATG
*
83987301 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAA
1 CCTTCGGGACTTAGCCCGGATATAATAACTAGCACAAA
83987339 GCCCGAATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
39 13 0.39
40 20 0.61
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATAACTAGCACAAATG
Found at i:83987348 original size:25 final size:25
Alignment explanation
Indices: 83987313--83987363 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
83987303 TTCGGGACTT
*
83987313 AGCCCGGATATAATCACTAGCACAA
1 AGCCCGAATATAATCACTAGCACAA
83987338 AGCCCGAATATAATCACTAGCACAA
1 AGCCCGAATATAATCACTAGCACAA
83987363 A
1 A
83987364 TGCCTTCGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.43, C:0.27, G:0.14, T:0.16
Consensus pattern (25 bp):
AGCCCGAATATAATCACTAGCACAA
Done.