Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 247 of 373
Found at i:83987395 original size:40 final size:40
Alignment explanation
Indices: 83987338--83987462 Score: 214
Period size: 40 Copynumber: 3.1 Consensus size: 40
83987328 ACTAGCACAA
* *
83987338 AGCCCGAATATAATCACTAGCACAAATGCCTTCGGGACTT
1 AGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
83987378 AGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
1 AGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
* *
83987418 AGCCCAGATATAGTAACTAGCACAAATGCCTTCGGGACTT
1 AGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
83987458 AGCCC
1 AGCCC
83987463 ACTAGCACAA
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (40 bp):
AGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
Found at i:83988877 original size:13 final size:13
Alignment explanation
Indices: 83988859--83988884 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83988849 ATTTTTATTT
83988859 TTAACATAAAATA
1 TTAACATAAAATA
83988872 TTAACATAAAATA
1 TTAACATAAAATA
83988885 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:83999644 original size:92 final size:92
Alignment explanation
Indices: 83999533--83999702 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
83999523 GCCCCTAAGT
* *
83999533 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83999598 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
83999625 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83999690 CGAGTTCGGATGC
66 CGAGTTCGGATGC
83999703 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:83999699 original size:46 final size:46
Alignment explanation
Indices: 83999528--83999699 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
83999518 AACCCGCCCC
* * *
83999528 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
83999574 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA
* *
83999620 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
83999666 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83999700 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 95 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:83999718 original size:46 final size:46
Alignment explanation
Indices: 83999530--83999718 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
83999520 CCCGCCCCTA
* ** * *
83999530 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
83999575 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
83999623 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
83999668 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
83999714 AGTGA
1 AGTGA
83999719 CATGTCACTT
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 95 0.82
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:84000172 original size:30 final size:30
Alignment explanation
Indices: 84000138--84000197 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
84000128 ATTTAATACG
84000138 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
84000168 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
84000198 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:84002545 original size:17 final size:17
Alignment explanation
Indices: 84002506--84002545 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
84002496 AAAACCCCTG
* *
84002506 CAAAAATTAGATTTTCG
1 CAAAATTTAGATTTTCA
84002523 CAAAATTTAGATTTTCA
1 CAAAATTTAGATTTTCA
84002540 CAAAAT
1 CAAAAT
84002546 ACCTACATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.35
Consensus pattern (17 bp):
CAAAATTTAGATTTTCA
Found at i:84016505 original size:47 final size:47
Alignment explanation
Indices: 84016446--84016721 Score: 507
Period size: 47 Copynumber: 5.9 Consensus size: 47
84016436 GAAATGATAG
*
84016446 TAAGGCCTAATGGCCGATTTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
84016493 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
84016540 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
84016587 TAAGGCCAAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
84016634 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
84016681 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
84016722 ATAGCCGATG
Statistics
Matches: 223, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 223 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:84016726 original size:32 final size:32
Alignment explanation
Indices: 84016690--84016755 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
84016680 ATAAGGCCTA
84016690 ATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATAGCCGATGTGATGAATGTGAAAGTGTATAT
84016722 ATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATAGCCGATGTGATGAATGTGAAAGTGTATAT
84016754 AT
1 AT
84016756 GTGATAAGGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (32 bp):
ATAGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:84016736 original size:79 final size:79
Alignment explanation
Indices: 84016646--84016802 Score: 305
Period size: 79 Copynumber: 2.0 Consensus size: 79
84016636 AGGCCAAATG
*
84016646 GCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
84016711 AAAGTGTATATATA
66 AAAGTGTATATATA
84016725 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
84016790 AAAGTGTATATAT
66 AAAGTGTATATAT
84016803 GTAATAAGGC
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 77 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (79 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
AAAGTGTATATATA
Found at i:84016741 original size:126 final size:126
Alignment explanation
Indices: 84016601--84016849 Score: 444
Period size: 126 Copynumber: 2.0 Consensus size: 126
84016591 GCCAAATGGT
* *
84016601 CGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATAGCCGATGTGATGAATGTGAA
* *
84016666 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATAGC
66 AGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATAGC
*
84016727 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATAGCCGATGTGATGAATGTGAA
*
84016792 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
66 AGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
84016850 GTGATAAGGC
Statistics
Matches: 117, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
126 117 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (126 bp):
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATAGCCGATGTGATGAATGTGAA
AGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATAGC
Found at i:84016776 original size:47 final size:47
Alignment explanation
Indices: 84016725--84016950 Score: 346
Period size: 47 Copynumber: 4.8 Consensus size: 47
84016715 TGTATATATA
*
84016725 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
84016772 GCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
84016819 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* * * *
84016866 GCCGATGTG-TGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* * * * *
84016912 GCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
84016951 TCCCGAAGGG
Statistics
Matches: 164, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 40 0.24
47 124 0.76
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
Found at i:84016841 original size:173 final size:172
Alignment explanation
Indices: 84016552--84016895 Score: 598
Period size: 173 Copynumber: 2.0 Consensus size: 172
84016542 AGGCCTAATG
* * *
84016552 GCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCAAATGGTCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATAGCCGATGTGATGAATGTG
* * *
84016617 AAAGTGTATATGTGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
66 AAAGTGTATATATGTAATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
84016682 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
131 AAGGCCTAATAGCCGATGTG-TGAATGTGAAAGTGTATATATA
*
84016725 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATAGCCGATGTGATGAATGTG
*
84016790 AAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
66 AAAGTGTATATATGTAATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
84016855 AAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATATAT
131 AAGGCCTAATAGCCGATGTGTGAATGTGAAAGTGTATATAT
84016896 GTGACAGGGC
Statistics
Matches: 162, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
172 21 0.13
173 141 0.87
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (172 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATAGCCGATGTGATGAATGTG
AAAGTGTATATATGTAATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCTAATAGCCGATGTGTGAATGTGAAAGTGTATATATA
Found at i:84016945 original size:93 final size:94
Alignment explanation
Indices: 84016731--84016950 Score: 334
Period size: 93 Copynumber: 2.4 Consensus size: 94
84016721 TATAGCCGAT
84016731 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
* * * *
84016796 TATATATGTAATAAGGCCTAATGGCCGAT
66 TATATATGTAACAAGGCCGAATGGCCAAC
*
84016825 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
* * *
84016889 TATATATGTGACAGGGCCGAGTGGCCAAC
66 TATATATGTAACAAGGCCGAATGGCCAAC
* * *
84016918 GTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAG
84016951 TCCCGAAGGG
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
93 66 0.57
94 49 0.43
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (94 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
TATATATGTAACAAGGCCGAATGGCCAAC
Found at i:84017125 original size:37 final size:37
Alignment explanation
Indices: 84017069--84017147 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
84017059 CCGAGCTCTA
* * *
84017069 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
84017106 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
84017143 AAGAC
1 AAGAC
84017148 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:84019051 original size:43 final size:43
Alignment explanation
Indices: 84019003--84019105 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
84018993 TTGGTTTTCA
*
84019003 GCACTAAGTGTGCGGGCAATAAGTGTTCATGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
84019046 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
84019089 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
84019106 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.22, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:84019122 original size:29 final size:29
Alignment explanation
Indices: 84019087--84019160 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
84019077 GTTGTGAGAT
* *
84019087 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
84019116 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
84019145 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
84019161 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:84019598 original size:40 final size:40
Alignment explanation
Indices: 84019475--84019631 Score: 140
Period size: 40 Copynumber: 3.9 Consensus size: 40
84019465 TCGAATGATG
* *
84019475 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCT-AGTGACTATA
* * * * *
84019515 TCCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCTAGTGACTATA
*
84019555 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TATA
1 TCCGGGCTAAGTCCCGAAG-GCATTCGTGCTAGTGACTATA
* * * * *
84019595 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAG-GCATTCGTGCTAGTGAC
84019632 GTGTATTCGG
Statistics
Matches: 95, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
39 1 0.01
40 74 0.78
41 20 0.21
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACTATA
Found at i:84023095 original size:47 final size:47
Alignment explanation
Indices: 84023039--84023314 Score: 480
Period size: 47 Copynumber: 5.9 Consensus size: 47
84023029 GAAATGATAG
*
84023039 TAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
84023086 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
84023133 GAAGGCCTAATGGCCGATGTGATGAAGGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* * *
84023180 TAAGACCAAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
84023227 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
84023274 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
84023315 ATAGCCGATG
Statistics
Matches: 217, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 217 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:84023319 original size:32 final size:32
Alignment explanation
Indices: 84023283--84023348 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
84023273 ATAAGGCCTA
84023283 ATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATAGCCGATGTGATGAATGTGAAAGTGTATAT
84023315 ATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATAGCCGATGTGATGAATGTGAAAGTGTATAT
84023347 AT
1 AT
84023349 GTGATAAGGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (32 bp):
ATAGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:84023327 original size:79 final size:79
Alignment explanation
Indices: 84023239--84023395 Score: 305
Period size: 79 Copynumber: 2.0 Consensus size: 79
84023229 AGGCCAAATG
*
84023239 GCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
84023304 AAAGTGTATATATA
66 AAAGTGTATATATA
84023318 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
84023383 AAAGTGTATATAT
66 AAAGTGTATATAT
84023396 GTAATAAGGC
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 77 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (79 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
AAAGTGTATATATA
Found at i:84023334 original size:126 final size:126
Alignment explanation
Indices: 84023194--84023442 Score: 444
Period size: 126 Copynumber: 2.0 Consensus size: 126
84023184 ACCAAATGGT
* *
84023194 CGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATAGCCGATGTGATGAATGTGAA
* *
84023259 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATAGC
66 AGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATAGC
*
84023320 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATAGCCGATGTGATGAATGTGAA
*
84023385 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
66 AGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
84023443 GTGATAAGGC
Statistics
Matches: 117, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
126 117 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (126 bp):
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATAGCCGATGTGATGAATGTGAA
AGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATAGC
Found at i:84023369 original size:47 final size:47
Alignment explanation
Indices: 84023318--84023543 Score: 346
Period size: 47 Copynumber: 4.8 Consensus size: 47
84023308 TGTATATATA
*
84023318 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
84023365 GCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
84023412 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* * * *
84023459 GCCGATGTG-TGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* * * * *
84023505 GCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
84023544 TCCCAAAGGG
Statistics
Matches: 164, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 40 0.24
47 124 0.76
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
Found at i:84023434 original size:173 final size:172
Alignment explanation
Indices: 84023145--84023488 Score: 580
Period size: 173 Copynumber: 2.0 Consensus size: 172
84023135 AGGCCTAATG
* * *
84023145 GCCGATGTGATGAAGGTGAAAGTGTATATGTGTGATAAGACCAAATGGTCGATGTGATGAATGTG
1 GCCGATGTGATGAAGGTGAAAGTGTATATATGTGATAAGACCAAATAGCCGATGTGATGAATGTG
* * *
84023210 AAAGTGTATATGTGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
66 AAAGTGTATATATGTAATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
84023275 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
131 AAGGCCTAATAGCCGATGTG-TGAATGTGAAAGTGTATATATA
* * *
84023318 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 GCCGATGTGATGAAGGTGAAAGTGTATATATGTGATAAGACCAAATAGCCGATGTGATGAATGTG
*
84023383 AAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
66 AAAGTGTATATATGTAATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
84023448 AAGGCCTAATGGCCGATGTGTGAATGTGAAAGTGTATATAT
131 AAGGCCTAATAGCCGATGTGTGAATGTGAAAGTGTATATAT
84023489 GTGACAGGGC
Statistics
Matches: 160, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
172 21 0.13
173 139 0.87
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (172 bp):
GCCGATGTGATGAAGGTGAAAGTGTATATATGTGATAAGACCAAATAGCCGATGTGATGAATGTG
AAAGTGTATATATGTAATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCTAATAGCCGATGTGTGAATGTGAAAGTGTATATATA
Found at i:84023538 original size:93 final size:94
Alignment explanation
Indices: 84023324--84023543 Score: 334
Period size: 93 Copynumber: 2.4 Consensus size: 94
84023314 TATAGCCGAT
84023324 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
* * * *
84023389 TATATATGTAATAAGGCCTAATGGCCGAT
66 TATATATGTAACAAGGCCGAATGGCCAAC
*
84023418 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
* * *
84023482 TATATATGTGACAGGGCCGAGTGGCCAAC
66 TATATATGTAACAAGGCCGAATGGCCAAC
* * *
84023511 GTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAG
84023544 TCCCAAAGGG
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
93 66 0.57
94 49 0.43
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (94 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
TATATATGTAACAAGGCCGAATGGCCAAC
Found at i:84023718 original size:37 final size:37
Alignment explanation
Indices: 84023662--84023740 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
84023652 CCGAGCTCTA
* * *
84023662 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
84023699 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
84023736 AAGAC
1 AAGAC
84023741 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:84030434 original size:39 final size:39
Alignment explanation
Indices: 84030380--84030466 Score: 140
Period size: 39 Copynumber: 2.2 Consensus size: 39
84030370 CTGGCAATTA
*
84030380 GCCTGCTAGGTATAAACCTGAACTTATCAC-CGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACAAGG-ACGAG
*
84030419 GCCTGCTAGGTATAAACCTGAATTTATCACAAGGACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACAAGGACGAG
84030458 GCCTGCTAG
1 GCCTGCTAG
84030467 ACATTAAGTC
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 43 0.96
40 2 0.04
ACGTcount: A:0.29, C:0.25, G:0.24, T:0.22
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAACTTATCACAAGGACGAG
Found at i:84048987 original size:58 final size:57
Alignment explanation
Indices: 84048906--84049048 Score: 157
Period size: 57 Copynumber: 2.5 Consensus size: 57
84048896 CTCATTATAG
* *
84048906 AAAGGATTTAGCCCGGA-TAGGTAATCCTAATATAATCCC-TCTCGAGCATATGTTACA-
1 AAAGGATTTAGCCTGGACT-GGTAATCCTAAT-TAAGCCCTTCT-GAGCATATGTTACAT
* * * *
84048963 ATTAGGATTTAGCCTGGACTGGTAATTCTAATTGAGCTCTTCTGAGCATATGTTACAT
1 A-AAGGATTTAGCCTGGACTGGTAATCCTAATTAAGCCCTTCTGAGCATATGTTACAT
* *
84049021 AAAAGATTTAGCCTGGACCGGTAATCCT
1 AAAGGATTTAGCCTGGACTGGTAATCCT
84049049 GTAATACAAT
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
57 42 0.58
58 29 0.40
59 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (57 bp):
AAAGGATTTAGCCTGGACTGGTAATCCTAATTAAGCCCTTCTGAGCATATGTTACAT
Found at i:84063096 original size:64 final size:64
Alignment explanation
Indices: 84062995--84063123 Score: 240
Period size: 64 Copynumber: 2.0 Consensus size: 64
84062985 GGAAAGTAAG
*
84062995 TAAATTGAGAGGTGTAGAATTTCATAGAAAGGTTGATGGTTATACATTACGTTCCATAAAATCC
1 TAAATTGAGAGGTGTAGAATTTCATAGAAAGGTTGATGGTTAGACATTACGTTCCATAAAATCC
*
84063059 TAAATTGAGAGGTGTAGAATTTCGTAGAAAGGTTGATGGTTAGACATTACGTTCCATAAAATCC
1 TAAATTGAGAGGTGTAGAATTTCATAGAAAGGTTGATGGTTAGACATTACGTTCCATAAAATCC
84063123 T
1 T
84063124 TTCATGTTAT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.33
Consensus pattern (64 bp):
TAAATTGAGAGGTGTAGAATTTCATAGAAAGGTTGATGGTTAGACATTACGTTCCATAAAATCC
Found at i:84064211 original size:18 final size:18
Alignment explanation
Indices: 84064185--84064237 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
84064175 CAACTTCTTG
*
84064185 TAATTATAATGAAAATAA
1 TAATAATAATGAAAATAA
** *
84064203 TAATAATAATTCAAGTAA
1 TAATAATAATGAAAATAA
84064221 TAATAACATAATGAAAA
1 TAAT-A-ATAATGAAAA
84064238 CCTTATTACA
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
18 18 0.69
19 1 0.04
20 7 0.27
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.30
Consensus pattern (18 bp):
TAATAATAATGAAAATAA
Found at i:84068589 original size:40 final size:40
Alignment explanation
Indices: 84068545--84068806 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
84068535 GCTCCTCGTT
* *
84068545 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
84068585 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
84068625 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
84068664 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
84068703 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
84068742 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
84068783 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84068807 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:84085084 original size:39 final size:40
Alignment explanation
Indices: 84085039--84085263 Score: 224
Period size: 40 Copynumber: 5.7 Consensus size: 40
84085029 GCTCCTCGTT
* * * *
84085039 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
84085079 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
84085118 CGAATGCCTTCAGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
84085158 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGTA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
84085198 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
84085239 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
84085264 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
39 39 0.25
40 102 0.66
41 14 0.09
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:84090756 original size:47 final size:48
Alignment explanation
Indices: 84090684--84091139 Score: 383
Period size: 47 Copynumber: 9.8 Consensus size: 48
84090674 GTAAGGTGCT
* * *
84090684 GATGCCATGTCCCAAACATGTTCTTACACTGGCTCAT-ATCTCAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGCC
* * *
84090731 GATGCCATGTCCTAGACATGGTCTTACACTGACT-ATCATCTCGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AAGCC
* * * * *
84090779 GATG-CATGTCCTAGACAT-GTCTTACACTGGCTCA-CGTTTTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-ATCTCAAGCC
* * * * * *
84090825 GAT-ACATGTTCGAGACAT-GTCTTACACTAGCTC-TCGTCTCAATACC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA-GCC
* *
84090871 GATGCTATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGCC
* *
84090918 GATGCCATGTCCCAAACATGGTCTTACACTGACT-ATCATCTCATAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCA-AGCC
* * * * * *
84090966 GATG-CAAGTCCCAGGCAT-GTCTTACACTGGCTTA-CGTCTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AAGCC
* * * *
84091012 GATG-AATGTCCAAGACAT-GTCTTACACTAGCTC-TCCTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA-GCC
* ***
84091058 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAT-CTCAAGCC
* *
84091106 GATG-CGTGTCCCAGACAT-GTCTTACACTAGCTCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
84091140 CAAACAAATG
Statistics
Matches: 331, Mismatches: 58, Indels: 40
0.77 0.14 0.09
Matches are distributed among these distances:
45 4 0.01
46 128 0.39
47 139 0.42
48 58 0.18
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGCC
Found at i:84090826 original size:46 final size:46
Alignment explanation
Indices: 84090684--84091140 Score: 334
Period size: 46 Copynumber: 9.8 Consensus size: 46
84090674 GTAAGGTGCT
* ** * *
84090684 GATGCCATGTCCCAAACATGTTCTTACACTGGCTCATATCTC-AAGTC
1 GATG-CATGTCCCAGACATG-TCTTACACTGGCTCACGTCTCGAGGCC
* * *
84090731 GATGCCATGTCCTAGACATGGTCTTACACTGACT-ATCATCTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCA-CGTCTCG-AGGCC
* * *
84090779 GATGCATGTCCTAGACATGTCTTACACTGGCTCACGTTTTGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCACGTCTCGAGGCC
* * * * * * **
84090825 GATACATGTTCGAGACATGTCTTACACTAGCTCTCGTCTCAATACC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCACGTCTCGAGGCC
** * *
84090871 GATGCTATGTCCCAGACATGGTCTTACACTGGCTCATATCTC-AAGTC
1 GATGC-ATGTCCCAGACAT-GTCTTACACTGGCTCACGTCTCGAGGCC
* * * *
84090918 GATGCCATGTCCCAAACATGGTCTTACACTGACT-ATCATCTC-ATAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCA-CGTCTCGA-GGCC
* * * *
84090966 GATGCAAGTCCCAGGCATGTCTTACACTGGCTTACGTCTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCACGTCTCGAGGCC
* * * * * * *
84091012 GATGAATGTCCAAGACATGTCTTACACTAGCTCTCCTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCACGTCTCGAGGCC
* * * *
84091058 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCACGT-CTCGAGGCC
* *
84091106 GATGCGTGTCCCAGACATGTCTTACACTAGCTCAC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCAC
84091141 AAACAAATGA
Statistics
Matches: 332, Mismatches: 62, Indels: 33
0.78 0.15 0.08
Matches are distributed among these distances:
45 1 0.00
46 136 0.41
47 136 0.41
48 57 0.17
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCACGTCTCGAGGCC
Found at i:84091021 original size:140 final size:140
Alignment explanation
Indices: 84090837--84091133 Score: 350
Period size: 140 Copynumber: 2.1 Consensus size: 140
84090827 TACATGTTCG
* * ** * * *
84090837 AGACATGTCTTACACTAGCTCT-CGTCTCAATACCGATGCTATGTCCCAGACATGGTCTTACACT
1 AGACATGTCTTACACTGGCT-TACGTCTCGAGGCTGATG-AATGTCCAAGACAT-GTCTTACACT
* * *
84090901 GGCTCAT-ATCTCAA-GTCGATGCCATGTCCCAAACATGGTCTTACACTGACTATCAT-CTCATA
63 AGCTC-TCATCTCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTATCATAAT-ATA
84090963 GCCGATGCAAGTCCC
126 GCCGATGCAAGTCCC
*
84090978 AGGCATGTCTTACACTGGCTTACGTCTCGAGGCTGATGAATGTCCAAGACATGTCTTACACTAGC
1 AGACATGTCTTACACTGGCTTACGTCTCGAGGCTGATGAATGTCCAAGACATGTCTTACACTAGC
* * * * * *
84091043 TCTCCTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGA
66 TCTCATCTCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTATCATAATATAGCCGA
**
84091108 TGCGTGTCCC
131 TGCAAGTCCC
84091118 AGACATGTCTTACACT
1 AGACATGTCTTACACT
84091134 AGCTCACAAA
Statistics
Matches: 132, Mismatches: 20, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
138 1 0.01
139 20 0.15
140 80 0.61
141 31 0.23
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (140 bp):
AGACATGTCTTACACTGGCTTACGTCTCGAGGCTGATGAATGTCCAAGACATGTCTTACACTAGC
TCTCATCTCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTATCATAATATAGCCGA
TGCAAGTCCC
Found at i:84091030 original size:187 final size:187
Alignment explanation
Indices: 84090684--84091092 Score: 649
Period size: 187 Copynumber: 2.2 Consensus size: 187
84090674 GTAAGGTGCT
* * * *
84090684 GATGCCATGTCCCAAACATGTTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCTAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAAACA
* * *
84090749 TGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCTAGACATGTCTTACACTGGCTCAC
66 TGGTCTTACACTGACTATCATCTCATAGCCGATGCAAGTCCCAGACATGTCTTACACTGGCTCAC
* * * * *
84090814 GTTTTGAGGCCGATACATGTTCGAGACATGTCTTACACTAGCTCTCGTCTCAATACC
131 GTCTCGAGGCCGATACATGTCCAAGACATGTCTTACACTAGCTCTCCTCTCAATACC
*
84090871 GATGCTATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAAACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAAACA
* *
84090936 TGGTCTTACACTGACTATCATCTCATAGCCGATGCAAGTCCCAGGCATGTCTTACACTGGCTTAC
66 TGGTCTTACACTGACTATCATCTCATAGCCGATGCAAGTCCCAGACATGTCTTACACTGGCTCAC
* *
84091001 GTCTCGAGGCTGATGA-ATGTCCAAGACATGTCTTACACTAGCTCTCCTCTCAATGCC
131 GTCTCGAGGCCGAT-ACATGTCCAAGACATGTCTTACACTAGCTCTCCTCTCAATACC
84091058 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC
84091093 TCATAATGTG
Statistics
Matches: 203, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
187 202 1.00
188 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (187 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAAACA
TGGTCTTACACTGACTATCATCTCATAGCCGATGCAAGTCCCAGACATGTCTTACACTGGCTCAC
GTCTCGAGGCCGATACATGTCCAAGACATGTCTTACACTAGCTCTCCTCTCAATACC
Found at i:84094026 original size:24 final size:25
Alignment explanation
Indices: 84093998--84094069 Score: 62
Period size: 24 Copynumber: 3.0 Consensus size: 25
84093988 TGTGAGAGTT
84093998 AGTGTAAGACCATGTCTGGGACATC
1 AGTGTAAGACCATGTCTGGGACATC
* * **
84094023 -GTGTCAGCCTCGAT-TC-GATA-ATC
1 AGTGTAAGAC-C-ATGTCTGGGACATC
84094046 AGTGTAAGACCATGTCTGGGACAT
1 AGTGTAAGACCATGTCTGGGACAT
84094070 GGCATCGGCA
Statistics
Matches: 33, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
22 2 0.06
23 6 0.18
24 18 0.55
25 5 0.15
26 2 0.06
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (25 bp):
AGTGTAAGACCATGTCTGGGACATC
Found at i:84102216 original size:21 final size:21
Alignment explanation
Indices: 84102186--84102228 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
84102176 CACGGCCTGC
*
84102186 CCACACGGGCATGTCCCATAT
1 CCACACGGGCATCTCCCATAT
* *
84102207 CCACATGGGCGTCTCCCATAT
1 CCACACGGGCATCTCCCATAT
84102228 C
1 C
84102229 TATACAGGCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.40, G:0.19, T:0.21
Consensus pattern (21 bp):
CCACACGGGCATCTCCCATAT
Found at i:84114157 original size:20 final size:20
Alignment explanation
Indices: 84114132--84114171 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
84114122 CCTTTTTAGG
* *
84114132 GTAAAAATTTTTTAAGTTTT
1 GTAAAAATTTCTAAAGTTTT
84114152 GTAAAAATTTCTAAAGTTTT
1 GTAAAAATTTCTAAAGTTTT
84114172 CAGTTTAGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.10, T:0.50
Consensus pattern (20 bp):
GTAAAAATTTCTAAAGTTTT
Found at i:84120620 original size:89 final size:91
Alignment explanation
Indices: 84120455--84120675 Score: 286
Period size: 89 Copynumber: 2.4 Consensus size: 91
84120445 CTTAAGGGTG
* *
84120455 TAAAAAACCCCTCAAACTTTTTCAAAAAAAGCAATTAAGCCTTTCCTCTTTTCTTTTTCACTCAA
1 TAAAAAAGCCCTCAAACTTTTTCAAAAAAAGCAATTAAGCCTCTCCTCTTTTCTTTTTCACTCAA
*
84120520 TTGAGCACTTGAACTTTCCAAATGCA
66 TTGAGCACTTGAACTTTCAAAATGCA
* * * *
84120546 TAAAAAAGGCCCTTAAACTTCTTCAAAAGAAGCAATTAAGCC-CTGCT-TTTT-TTTTTCACTCA
1 TAAAAAA-GCCCTCAAACTTTTTCAAAAAAAGCAATTAAGCCTCTCCTCTTTTCTTTTTCACTCA
* * *
84120608 ATTGGGTACTTGAACTTTCAAAATGTA
65 ATTGAGCACTTGAACTTTCAAAATGCA
* * *
84120635 TAAAAAAAGACCTCAAAATTTTTCAAAAAAATCAATTAAGC
1 T-AAAAAAGCCCTCAAACTTTTTCAAAAAAAGCAATTAAGC
84120676 AGCTACTCTT
Statistics
Matches: 112, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
89 62 0.55
90 10 0.09
91 10 0.09
92 30 0.27
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.33
Consensus pattern (91 bp):
TAAAAAAGCCCTCAAACTTTTTCAAAAAAAGCAATTAAGCCTCTCCTCTTTTCTTTTTCACTCAA
TTGAGCACTTGAACTTTCAAAATGCA
Found at i:84120713 original size:11 final size:11
Alignment explanation
Indices: 84120685--84120723 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
84120675 CAGCTACTCT
*
84120685 TATT-AAAAAT
1 TATTAAAAAAA
*
84120695 TATAAAAAAAA
1 TATTAAAAAAA
84120706 TATTAAAAAAA
1 TATTAAAAAAA
84120717 TATTAAA
1 TATTAAA
84120724 TTTTAATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
10 3 0.12
11 22 0.88
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
TATTAAAAAAA
Found at i:84120729 original size:18 final size:19
Alignment explanation
Indices: 84120703--84120738 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
84120693 ATTATAAAAA
84120703 AAATATTAA-AAAAATATT
1 AAATATTAATAAAAATATT
*
84120721 AAATTTTAATAAAAATAT
1 AAATATTAATAAAAATAT
84120739 AAAAAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
AAATATTAATAAAAATATT
Found at i:84120735 original size:30 final size:28
Alignment explanation
Indices: 84120691--84120754 Score: 92
Period size: 30 Copynumber: 2.2 Consensus size: 28
84120681 CTCTTATTAA
*
84120691 AAATTATAAAAAAAATATTAAAAAAATATT
1 AAATTTTAAAAAAAATA-TAAAAAAAT-TT
*
84120721 AAATTTTAATAAAAATATAAAAAAATTT
1 AAATTTTAAAAAAAATATAAAAAAATTT
84120749 AAATTT
1 AAATTT
84120755 AGTTTTATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 8 0.25
29 9 0.28
30 15 0.47
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (28 bp):
AAATTTTAAAAAAAATATAAAAAAATTT
Found at i:84120749 original size:21 final size:21
Alignment explanation
Indices: 84120688--84120750 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 21
84120678 CTACTCTTAT
84120688 TAAAAATTATAAAAAAAATATTAA
1 TAAAAA-TAT-AAAAAAAT-TTAA
* *
84120712 -AAAAATAT--TAAATTTTAA
1 TAAAAATATAAAAAAATTTAA
84120730 TAAAAATATAAAAAAATTTAA
1 TAAAAATATAAAAAAATTTAA
84120751 ATTTAGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 9
0.71 0.09 0.20
Matches are distributed among these distances:
18 4 0.12
19 12 0.38
21 8 0.25
22 3 0.09
23 5 0.16
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (21 bp):
TAAAAATATAAAAAAATTTAA
Found at i:84126205 original size:24 final size:25
Alignment explanation
Indices: 84126153--84126220 Score: 77
Period size: 24 Copynumber: 2.7 Consensus size: 25
84126143 ATAATTAAAA
*
84126153 AAATAATATATAATATGTATCTTTATT
1 AAATAAT-TATATTAT-TATCTTTATT
*
84126180 AAATAATTATATTATTAT-TTTTTT
1 AAATAATTATATTATTATCTTTATT
84126204 AAGA-AATTATATTATTA
1 AA-ATAATTATATTATTA
84126221 AATATTTTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
24 20 0.53
25 4 0.11
26 7 0.18
27 7 0.18
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (25 bp):
AAATAATTATATTATTATCTTTATT
Found at i:84133269 original size:38 final size:38
Alignment explanation
Indices: 84133220--84133296 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
84133210 CAGCACGAAT
84133220 ACCTTCAGGACTTAACCCGGTTATAATAACCCGCACGA
1 ACCTTCAGGACTTAACCCGGTTATAATAACCCGCACGA
*
84133258 ACCTTCGGGACTTAACCCGGTTATAATAACCCGCACGA
1 ACCTTCAGGACTTAACCCGGTTATAATAACCCGCACGA
84133296 A
1 A
84133297 TGCCTTCGCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (38 bp):
ACCTTCAGGACTTAACCCGGTTATAATAACCCGCACGA
Found at i:84136867 original size:32 final size:32
Alignment explanation
Indices: 84136830--84136894 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
84136820 AATGCTTACC
84136830 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
84136862 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
84136894 A
1 A
84136895 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:84138364 original size:34 final size:34
Alignment explanation
Indices: 84138320--84138510 Score: 152
Period size: 34 Copynumber: 5.6 Consensus size: 34
84138310 TGCAATATGG
* *
84138320 TATGCCTATAACAGATCAATACAGTAGTAATTAA
1 TATGCTTATAACAGATCAATACAGTAGCAATTAA
* * * * *
84138354 TATGCTTATAATAGTTCGATATAGTAGCAAATAA
1 TATGCTTATAACAGATCAATACAGTAGCAATTAA
* * *
84138388 TATGCTTCTAGCAGATCAATAC-G-ATGACATTTAA
1 TATGCTTATAACAGATCAATACAGTA-G-CAATTAA
* * * *
84138422 TATGCTTATAATAGATTAATACAATAGCAAATAA
1 TATGCTTATAACAGATCAATACAGTAGCAATTAA
** ** * *
84138456 TATATTTATAATGGATCAATGCGGTAGCAATTAA
1 TATGCTTATAACAGATCAATACAGTAGCAATTAA
* *
84138490 TATGTTTATAACAAATCAATA
1 TATGCTTATAACAGATCAATA
84138511 TACAGTAACA
Statistics
Matches: 118, Mismatches: 35, Indels: 8
0.73 0.22 0.05
Matches are distributed among these distances:
32 1 0.01
33 2 0.02
34 113 0.96
35 1 0.01
36 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.34
Consensus pattern (34 bp):
TATGCTTATAACAGATCAATACAGTAGCAATTAA
Found at i:84138490 original size:68 final size:68
Alignment explanation
Indices: 84138326--84138500 Score: 183
Period size: 68 Copynumber: 2.6 Consensus size: 68
84138316 ATGGTATGCC
* * * * *
84138326 TATAACAGATCAATACAGTAGTAATTAATATGCTTATAATAGTTCGATATAGTAGCAAATAATAT
1 TATAACAGATCAATACGGTAGCAATTAATATGCTTATAATAGTTCAATACAATAGCAAATAATAT
*
84138391 GCT
66 ACT
* * * *
84138394 TCTAGCAGATCAATACGAT-GACATTTAATATGCTTATAATAGATT-AATACAATAGCAAATAAT
1 TATAACAGATCAATACGGTAG-CAATTAATATGCTTATAATAG-TTCAATACAATAGCAAATAAT
*
84138457 ATATT
64 ATACT
** * *
84138462 TATAATGGATCAATGCGGTAGCAATTAATATGTTTATAA
1 TATAACAGATCAATACGGTAGCAATTAATATGCTTATAA
84138501 CAAATCAATA
Statistics
Matches: 85, Mismatches: 19, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
67 1 0.01
68 81 0.95
69 3 0.04
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.34
Consensus pattern (68 bp):
TATAACAGATCAATACGGTAGCAATTAATATGCTTATAATAGTTCAATACAATAGCAAATAATAT
ACT
Found at i:84144015 original size:3 final size:3
Alignment explanation
Indices: 84144007--84144035 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
84143997 GCCCTTTTCT
84144007 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
84144036 TATAAATAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:84146656 original size:18 final size:18
Alignment explanation
Indices: 84146635--84146672 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
84146625 CCAAAAGGAT
84146635 CTGTGAGTGTCGAAGCAC
1 CTGTGAGTGTCGAAGCAC
*
84146653 CTGTGAGTGTTGAAGCAC
1 CTGTGAGTGTCGAAGCAC
84146671 CT
1 CT
84146673 ACAGTTAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.26
Consensus pattern (18 bp):
CTGTGAGTGTCGAAGCAC
Found at i:84146860 original size:201 final size:200
Alignment explanation
Indices: 84146514--84147031 Score: 757
Period size: 201 Copynumber: 2.6 Consensus size: 200
84146504 GAGTGTTGAG
* *
84146514 GCACCTACGGTTAATGAAGTTGATGATGGTGGCTCAAGCGTTACCAGTGGTAAGTTGAGGAGAAG
1 GCACCTACGGTTAATGAAGTTGATAACGGTGGCTCAAGCGTTA-CAGTGGTAAGTTGAGGAGAAG
* * * * *
84146579 GACGTGCTATGAGTGTGGACAAAAGGGCCATATTTCTTCTGCTTGCCCAAAAGGATCTGTGAGTG
65 GACATGCTACGAGTGCGGACAAAAGGGCCATATTTCTTCTGCTTGCCCAAAAGGATATGCGAGTG
* * * * * *
84146644 TCGAAGCACCTGTGAGTGTTGAAGCACCTACAGTTAATGAAGTTGGTAACAGTGGTTCGATGGTT
130 TCAAAGCAACTGTGAGTGTCGAAGCACCTACAGTTAATGAAGTTGGCAACAGTGGTTCAACGGTT
84146709 AATGAA
195 AATGAA
* *
84146715 GCACCTACGGTTAATGAAGTTGATAACGGTGGCTCAAGTGTTACTAGTGGTAAGTTAAGGAGAAG
1 GCACCTACGGTTAATGAAGTTGATAACGGTGGCTCAAGCGTTAC-AGTGGTAAGTTGAGGAGAAG
*
84146780 GACATGCTACGAGTGCGGACAAAAGGGCCATATTTCTTCTGCTTGTCCAAAAGGATATGCGAGTG
65 GACATGCTACGAGTGCGGACAAAAGGGCCATATTTCTTCTGCTTGCCCAAAAGGATATGCGAGTG
*
84146845 TCAAAGCAACTGTGAGTGTCGAAGCACCTACAGTTAATGAAGTTGGCAACGGTGGTTCAACGGTT
130 TCAAAGCAACTGTGAGTGTCGAAGCACCTACAGTTAATGAAGTTGGCAACAGTGGTTCAACGGTT
84146910 AATGAA
195 AATGAA
* * * ** * * * *
84146916 GCACCTACGGTTAACGAAGTTGCTAACGATGGCTTGACCGTTAGCAGCGGGAAATTGAGGAGAAG
1 GCACCTACGGTTAATGAAGTTGATAACGGTGGCTCAAGCGTTA-CAGTGGTAAGTTGAGGAGAAG
* *
84146981 GACATGCTACGAGTGCGGACAAAAGGGTCATATCTCTTCTGCTTGCCCAAA
65 GACATGCTACGAGTGCGGACAAAAGGGCCATATTTCTTCTGCTTGCCCAAA
84147032 TAAGAAATCT
Statistics
Matches: 284, Mismatches: 31, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
200 1 0.00
201 282 0.99
202 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (200 bp):
GCACCTACGGTTAATGAAGTTGATAACGGTGGCTCAAGCGTTACAGTGGTAAGTTGAGGAGAAGG
ACATGCTACGAGTGCGGACAAAAGGGCCATATTTCTTCTGCTTGCCCAAAAGGATATGCGAGTGT
CAAAGCAACTGTGAGTGTCGAAGCACCTACAGTTAATGAAGTTGGCAACAGTGGTTCAACGGTTA
ATGAA
Found at i:84172584 original size:23 final size:23
Alignment explanation
Indices: 84172557--84172608 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
84172547 TACATTACAC
* * *
84172557 TATTTTTTTTAATTTATGTATAT
1 TATTTTATTAAATTCATGTATAT
*
84172580 TATTTAATTAAATTCATGTATAT
1 TATTTTATTAAATTCATGTATAT
84172603 TATTTT
1 TATTTT
84172609 GTATATTACT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (23 bp):
TATTTTATTAAATTCATGTATAT
Found at i:84175063 original size:12 final size:12
Alignment explanation
Indices: 84175046--84175082 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
84175036 AGGTAGAAAG
84175046 AGATGCAAGAAC
1 AGATGCAAGAAC
* *
84175058 AGATGCAAGCAT
1 AGATGCAAGAAC
84175070 AGATGCAAGAAC
1 AGATGCAAGAAC
84175082 A
1 A
84175083 ACTAAGATCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.24, T:0.11
Consensus pattern (12 bp):
AGATGCAAGAAC
Found at i:84177744 original size:22 final size:22
Alignment explanation
Indices: 84177719--84177766 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
84177709 CAACAGTACA
84177719 AAAAATAAAAAATAATAAA-AAT
1 AAAAATAAAAAATAA-AAATAAT
* * *
84177741 AAAAGTGAAGAATAAAAATAAT
1 AAAAATAAAAAATAAAAATAAT
84177763 AAAA
1 AAAA
84177767 CAAAGGTCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 3 0.14
22 19 0.86
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (22 bp):
AAAAATAAAAAATAAAAATAAT
Found at i:84178338 original size:28 final size:29
Alignment explanation
Indices: 84178298--84178352 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
84178288 TTGAGACTAA
*
84178298 AAAAAAATCATC-AAAAATAAAAAAAAAT
1 AAAAAAATAATCAAAAAATAAAAAAAAAT
*
84178326 AAAAAATTAATCAAAAAATAAAAAAAA
1 AAAAAAATAATCAAAAAATAAAAAAAA
84178353 TTCATCAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 10 0.42
29 14 0.58
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.15
Consensus pattern (29 bp):
AAAAAAATAATCAAAAAATAAAAAAAAAT
Found at i:84178341 original size:21 final size:21
Alignment explanation
Indices: 84178316--84178360 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
84178306 CATCAAAAAT
*
84178316 AAAAAAAAATAAAAAATTAATC
1 AAAAAATAA-AAAAAATTAATC
*
84178338 AAAAAATAAAAAAAATTCATC
1 AAAAAATAAAAAAAATTAATC
84178359 AA
1 AA
84178361 TCAAAAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.18
Consensus pattern (21 bp):
AAAAAATAAAAAAAATTAATC
Found at i:84179844 original size:45 final size:43
Alignment explanation
Indices: 84179750--84179844 Score: 102
Period size: 45 Copynumber: 2.1 Consensus size: 43
84179740 GGGAGCATGC
* * * *
84179750 CGAAGATTGTAGTCTTATCTTCCTGAGGTAGTAAGGAAGTAGA
1 CGAAGATTGAAGTCTTATCTCCCTAAGATAGTAAGGAAGTAGA
*
84179793 CTGAAGATTGAAGATCTTATCTCCCTAAGATAGT-AGTAGAGTAGA
1 C-GAAGATTGAAG-TCTTATCTCCCTAAGATAGTAAGGA-AGTAGA
84179838 TCGAAGA
1 -CGAAGA
84179845 CGGCGAATCT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.02
44 13 0.30
45 28 0.65
46 1 0.02
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (43 bp):
CGAAGATTGAAGTCTTATCTCCCTAAGATAGTAAGGAAGTAGA
Found at i:84179944 original size:178 final size:177
Alignment explanation
Indices: 84179623--84180404 Score: 984
Period size: 178 Copynumber: 4.4 Consensus size: 177
84179613 CATCGGTGAG
* * **
84179623 TTGAAAATCTTATCTCCCTAAG-TAGTAGTGGAGTAGATCGAAGATGGAAAATCTTATCTTTCTG
1 TTGAAGATCTTATCTCCCTAAGATAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATC-TTCTG
* * * * * * **
84179687 AGGTAGCAGAGAAGCAGATTTTAGCTACCAGCCTTATCTCTCTGAGGTAGTAAGGGAGCATGCCG
65 AGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTG
* *
84179752 AAGATTGTAGTCTTATCTTCCTGAGGTAGTAAGGAAGTAGACTGAAGA
130 AAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
*
84179800 TTGAAGATCTTATCTCCCTAAGATAGTAGTAGAGTAGATCGAAGACGGCGAATCTTATCTTCCTG
1 TTGAAGATCTTATCTCCCTAAGATAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTT-CTG
* *
84179865 AGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTT-TGCTCTTTGAGGTAGTAAGAGAGCAGGTT
65 AGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTAT-CTCTCTGAGGTAGCAAGAGAGCAGGTT
* *
84179929 GAAGATTGTAGTCTTATCTTTCTGAGGTAGCAAGGAAGCAGACCGAAGA
129 GAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
* * * ** * *
84179978 TT-ATAGATCTTATCTCCCTGAGATAGCAGCGGAACAGATCGAAGACAGTGAATCTTATCTTCTC
1 TTGA-AGATCTTATCTCCCTAAGATAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCT-
* * * * *
84180042 GAAGTAGTAGGGGAGAAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGAT
64 GAGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTT
* * * *
84180107 GAAGATTGTAGTTTTATCTTTCTAAGGTAGCAA-GAGAGCAGACTG-AGG
129 GAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGA-AGCAGACTGAAGA
* * * *
84180155 TTTATAGATCTTATCTCCCTAAG-TAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATC-TCTC
1 TTGA-AGATCTTATCTCCCTAAGATAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCT-
* * * *
84180218 GAGGTAGCAGGGGAGTAGATTTTAGCCACCAACCTTATCTTTCTGATGTAGCAAGAGAGCAGGTT
64 GAGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTT
* *
84180283 GAAGATTGTAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAAACTGAAGA
129 GAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
* * * * *
84180332 TTGTAGATCTTATCTTCCTAAGAAAGCAGTGGAGTAGATCGAAGACGACGAATCTTATCTTCCTG
1 TTGAAGATCTTATCTCCCTAAGATAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTT-CTG
84180397 AGGTAGCA
65 AGGTAGCA
84180405 AAGAAACAGA
Statistics
Matches: 527, Mismatches: 65, Indels: 25
0.85 0.11 0.04
Matches are distributed among these distances:
176 115 0.22
177 100 0.19
178 309 0.59
179 3 0.01
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (177 bp):
TTGAAGATCTTATCTCCCTAAGATAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCTGA
GGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGA
AGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
Found at i:84179955 original size:44 final size:44
Alignment explanation
Indices: 84179674--84180347 Score: 188
Period size: 44 Copynumber: 15.2 Consensus size: 44
84179664 AGATGGAAAA
** * ***
84179674 TCTTATCTTTCTGAGGTAGC-AGAGAAGCAGATTTTAGCTACCAG
1 TCTTATCTTTCTGAGGTAGCAAGAG-AGCAGATTGAAGATTGTAG
* * * * **
84179718 CCTTATCTCTCTGAGGTAGTAAGGGAGCATG-CCGAAGATTGTAG
1 TCTTATCTTTCTGAGGTAGCAAGAGAGCA-GATTGAAGATTGTAG
* * * * *
84179762 TCTTATCTTCCTGAGGTAGTAAG-GAAGTAGACTGAAGATTGAAG
1 TCTTATCTTTCTGAGGTAGCAAGAG-AGCAGATTGAAGATTGTAG
** * * * * * ** * *
84179806 ATCTTATCTCCCTAAGATAG-TAGTAGAGTAGATCGAAGACGGCGAA
1 -TCTTATCTTTCTGAGGTAGCAAG-AGAGCAGATTGAAGATTG-TAG
* * * ** *****
84179852 TCTTATCTTCCTGAGGTAGCAGGGGAGCAGATTTTAGCCACCAG
1 TCTTATCTTTCTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAG
* * *
84179896 CCTT-TGCTCTT-TGAGGTAGTAAGAGAGCAGGTTGAAGATTGTAG
1 TCTTAT-CT-TTCTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAG
** *
84179940 TCTTATCTTTCTGAGGTAGCAAG-GAAGCAGACCGAAGATTATAG
1 TCTTATCTTTCTGAGGTAGCAAGAG-AGCAGATTGAAGATTGTAG
** * * * * ** *
84179984 ATCTTATCTCCCTGAGATAGC-AGCGGAACAGATCGAAGACAGTGAA
1 -TCTTATCTTTCTGAGGTAGCAAG-AGAGCAGATTGAAGATTGT-AG
* * * * * ** ****
84180030 TCTTATC-TTCTCGAAGTAGTAGGGGAGAAGATTTTAGCCACTAG
1 TCTTATCTTTCT-GAGGTAGCAAGAGAGCAGATTGAAGATTGTAG
* *
84180074 CCTTATCTCTCTGAGGTAGCAAGAGAGCAGGA-TGAAGATTGTAG
1 TCTTATCTTTCTGAGGTAGCAAGAGAGCA-GATTGAAGATTGTAG
* * * * * *
84180118 TTTTATCTTTCTAAGGTAGCAAGAGAGCAGACTGAGGTTTATAG
1 TCTTATCTTTCTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAG
** * * * * * *
84180162 ATCTTATCTCCCT-AAGTAG-TAGTGGAGCAGATCGAAGATGGTGAA
1 -TCTTATCTTTCTGAGGTAGCAAG-AGAGCAGATTGAAGATTGT-AG
* * * * ** ***** *
84180207 TCTTATCTCTC-GAGGTAGCAGGGGAGTAGATTTTAGCCACCAA
1 TCTTATCTTTCTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAG
* * *
84180250 CCTTATCTTTCTGATGTAGCAAGAGAGCAGGTTGAAGATTGTAG
1 TCTTATCTTTCTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAG
* * * *
84180294 TCTTATCTTCCTGAGGTAGTAAG-GAAGCAAACTGAAGATTGTAG
1 TCTTATCTTTCTGAGGTAGCAAGAG-AGCAGATTGAAGATTGTAG
84180338 ATCTTATCTT
1 -TCTTATCTT
84180348 CCTAAGAAAG
Statistics
Matches: 446, Mismatches: 153, Indels: 61
0.68 0.23 0.09
Matches are distributed among these distances:
43 22 0.05
44 280 0.63
45 138 0.31
46 6 0.01
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (44 bp):
TCTTATCTTTCTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAG
Found at i:84180005 original size:45 final size:44
Alignment explanation
Indices: 84179929--84180022 Score: 109
Period size: 45 Copynumber: 2.1 Consensus size: 44
84179919 AGAGCAGGTT
* ** *
84179929 GAAGATTGTAGTCTTATCTTTCTGAGGTAGCA-AGGAAGCAGACC
1 GAAGATTATAGTCTTATCTCCCTGAGATAGCAGAGGAA-CAGACC
* *
84179973 GAAGATTATAGATCTTATCTCCCTGAGATAGCAGCGGAACAGATC
1 GAAGATTATAG-TCTTATCTCCCTGAGATAGCAGAGGAACAGACC
84180018 GAAGA
1 GAAGA
84180023 CAGTGAATCT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
44 10 0.24
45 28 0.67
46 4 0.10
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (44 bp):
GAAGATTATAGTCTTATCTCCCTGAGATAGCAGAGGAACAGACC
Found at i:84180342 original size:354 final size:356
Alignment explanation
Indices: 84179702--84180393 Score: 968
Period size: 354 Copynumber: 1.9 Consensus size: 356
84179692 GCAGAGAAGC
* * * * *
84179702 AGATTTTAGCTACCAGCCTTATCTCTCTGAGGTAGTAAGGGAGCATGCCGAAGATTGTAGTCTTA
1 AGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGACGAAGATTGTAGTCTTA
* * *
84179767 TCTTCCTGAGGTAGTAAGGAAGTAGACTGAAGATTGAAGATCTTATCTCCCTAAGATAGTAGTAG
66 TCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGATAGTAGTAG
* *
84179832 AGTAGATCGAAGACGGCGAATCTTATCTTCCTGAGGTAGCAGGGGAGCAGATTTTAGCCACCAGC
131 AGCAGATCGAAGACGGCGAATCTTATCTTCCTGAGGTAGCAGGGGAGCAGATTTTAGCCACCAAC
* *
84179897 CTTTGCTCTTTGAGGTAGTAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTTCTGAGGTAGCAA
196 CTTTGCTCTTTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAA
* * *
84179962 GGAAGCAGACCGAAGATTATAGATCTTATCTCCCTGAGATAGCAGCGGAACAGATCGAAGAC-AG
261 GGAAGCAAACCGAAGATTATAGATCTTATCTCCCTAAGAAAGCAGCGGAACAGATCGAAGACGA-
*
84180026 TGAATCTTATCTTCTCGAAGTAGTAGGGGAGA
325 CGAATCTTATCTTCTCGAAGTAGTAGGGGAGA
* * *
84180058 AGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGATGAAGATTGTAGTTTTA
1 AGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGACGAAGATTGTAGTCTTA
* * *
84180123 TCTTTCTAAGGTAGCAA-GAGAGCAGACTG-AGGTTTATAGATCTTATCTCCCTAAG-TAGTAGT
66 TCTTCCTAAGGTAGCAAGGA-AGCAGACTGAAGATTGA-AGATCTTATCTCCCTAAGATAGTAGT
* * * *
84180185 GGAGCAGATCGAAGATGGTGAATCTTATC-T-CTCGAGGTAGCAGGGGAGTAGATTTTAGCCACC
129 AGAGCAGATCGAAGACGGCGAATCTTATCTTCCT-GAGGTAGCAGGGGAGCAGATTTTAGCCACC
*
84180248 AACCTTAT-CT-TTCTGATGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGGT
193 AACCTT-TGCTCTT-TGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGGT
* * * * * **
84180311 AGTAAGGAAGCAAACTGAAGATTGTAGATCTTATCTTCCTAAGAAAGCAGTGGAGTAGATCGAAG
256 AGCAAGGAAGCAAACCGAAGATTATAGATCTTATCTCCCTAAGAAAGCAGCGGAACAGATCGAAG
84180376 ACGACGAATCTTATCTTC
321 ACGACGAATCTTATCTTC
84180394 CTGAGGTAGC
Statistics
Matches: 296, Mismatches: 34, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
353 4 0.01
354 154 0.52
355 41 0.14
356 97 0.33
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28
Consensus pattern (356 bp):
AGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGACGAAGATTGTAGTCTTA
TCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGATAGTAGTAG
AGCAGATCGAAGACGGCGAATCTTATCTTCCTGAGGTAGCAGGGGAGCAGATTTTAGCCACCAAC
CTTTGCTCTTTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAA
GGAAGCAAACCGAAGATTATAGATCTTATCTCCCTAAGAAAGCAGCGGAACAGATCGAAGACGAC
GAATCTTATCTTCTCGAAGTAGTAGGGGAGA
Found at i:84180350 original size:45 final size:45
Alignment explanation
Indices: 84180282--84180450 Score: 143
Period size: 45 Copynumber: 3.8 Consensus size: 45
84180272 GAGAGCAGGT
* *
84180282 TGAAGATTGTAG-TCTTATCTTCCTGAGGTAGTAAGGAAGCAAAC
1 TGAAGATTGTAGATCTTATCTTCCTGAGATAGTAAGGAAGCAGAC
* * * * *
84180326 TGAAGATTGTAGATCTTATCTTCCTAAGAAAG-CAGTGGAGTAGA-
1 TGAAGATTGTAGATCTTATCTTCCTGAGATAGTAAG-GAAGCAGAC
* * * * *
84180370 TCGAAGA-CG-ACGAATCTTATCTTCCTGAGGTAGCAAAGAAACAGAC
1 T-GAAGATTGTA-G-ATCTTATCTTCCTGAGATAGTAAGGAAGCAGAC
84180416 TGAAGATTGTAGATCTTATC-TCCTTGAGATAGTAA
1 TGAAGATTGTAGATCTTATCTTCC-TGAGATAGTAA
84180451 TGGTGTAGAT
Statistics
Matches: 96, Mismatches: 19, Indels: 19
0.72 0.14 0.14
Matches are distributed among these distances:
43 1 0.01
44 20 0.21
45 70 0.73
46 4 0.04
47 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (45 bp):
TGAAGATTGTAGATCTTATCTTCCTGAGATAGTAAGGAAGCAGAC
Found at i:84180459 original size:90 final size:90
Alignment explanation
Indices: 84180294--84180674 Score: 310
Period size: 90 Copynumber: 4.3 Consensus size: 90
84180284 AAGATTGTAG
* * * *
84180294 TCTTATCTTCCTGAGGTAGTAAGGAAGCAAACTGAAGATTGTAGATCTTATCTTCC-TAAGAAAG
1 TCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGTAGATCTTATC-TCCTTGAGATAG
*
84180358 CAGTGGAGTAGATCGAAGACGACGAA
65 CAATGGAGTAGATCGAAGACGACGAA
* * *
84180384 TCTTATCTTCCTGAGGTAGCAAAGAAACAGACTGAAGATTGTAGATCTTATCTCCTTGAGATAGT
1 TCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGTAGATCTTATCTCCTTGAGATAGC
* * * *
84180449 AATGGTGTAGATTGAAGACAATGAA
66 AATGGAGTAGATCGAAGACGACGAA
* ** * * * ** **** * * *
84180474 TCTTATTTTCCCAAGGTAGCAGGGGAGCAGATTTTAGCCACTAG-CCTTATCTCCCTGAGGTAGC
1 TCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGTAGATCTTATCTCCTTGAGATAGC
* * * * *
84180538 AAAGGTGCAG-GCAGAAGATTGTA-G--
66 AATGGAGTAGATC-GAAGA-CG-ACGAA
* * *
84180562 TCTTATCTTCTTGAGGTAGCAAGGAAGTAGACTGAAGATTGTAGATCTAATCTCCTTGAGATAGC
1 TCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGTAGATCTTATCTCCTTGAGATAGC
* * *
84180627 AGTGGAGTAGAAT-GAAGATGGCGAA
66 AATGGAGTAG-ATCGAAGACGACGAA
*
84180652 TCTTATCTTCCCGAGGTAG-AAGG
1 TCTTATCTTCCTGAGGTAGCAAGG
84180675 GGAGCAGATT
Statistics
Matches: 219, Mismatches: 62, Indels: 21
0.73 0.21 0.07
Matches are distributed among these distances:
88 33 0.15
89 63 0.29
90 122 0.56
91 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (90 bp):
TCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGTAGATCTTATCTCCTTGAGATAGC
AATGGAGTAGATCGAAGACGACGAA
Found at i:84180500 original size:444 final size:447
Alignment explanation
Indices: 84179940--84180755 Score: 1101
Period size: 444 Copynumber: 1.8 Consensus size: 447
84179930 AAGATTGTAG
* * *
84179940 TCTTATCTTTCTGAGGTAGCAAGGAAGCAGACCGAAGATTATAGATCTTATCTCCCTGAGATAGC
1 TCTTATCTTCCTGAGGTAGCAAAGAAACAGACCGAAGATTATAGATCTTATCTCCCTGAGATAGC
* * * *
84180005 AGCGGAACAGATCGAAGACAGTGAATCTTATCTTCTCGAAGTAGTAGGGGAGAAGATTTTAGCCA
66 AACGGAACAGATCGAAGACAATGAATCTTATCTTCTCCAAGTAGCAGGGGAGAAGATTTTAGCCA
* *
84180070 CTAGCCTTATCTCTCTGAGGTAGC-AAGAGAGCAGG-ATGAAGATTGTAGTTTTATCTT-TCTAA
131 CTAGCCTTATCTCCCTGAGGTAGCAAAG-GAGCAGGCA-GAAGATTGTAGTCTTATCTTCT-TAA
* * * *
84180132 GGTAGCAA-GAGAGCAGACTGAGGTTTATAGATCTTATCTCCCTAAG-TAGTAGTGGAGCAG-AT
193 GGTAGCAAGGA-AGCAGACTGAAGATTATAGATCTAATCTCCCTAAGATAGCAGTGGAGCAGAAT
* * * * *
84180194 CGAAGATGGTGAATCTTATC-TCTCGAGGTAGCAGGGGAGTAGATTTTAGCCACCAACCTTATCT
257 -GAAGATGGCGAATCTTATCTTCCCGAGGTAGAAGGGGAGCAGATTTTAGCCACCAACCTTACCT
** * * ** * * *
84180258 TTCTGATGTAGCAAGAGAGCAGGTTGAAGATTGTA-GTCTTATCTTCCTGAGGTAGTAAGGAAGC
321 CCCTGAGGTAGCAAGAAAGCAGACTAAAGATTGAAGGTCTTATCTCCCTGAGGTAGTAAGGAAGC
84180322 AAACTGAAGATTGTAGATCTTATCTTCCTAAGAAAGCAGTGGAGTAGATCGAAGACGACGAA
386 AAACTGAAGATTGTAGATCTTATCTTCCTAAGAAAGCAGTGGAGTAGATCGAAGACGACGAA
* * * *
84180384 TCTTATCTTCCTGAGGTAGCAAAGAAACAGACTGAAGATTGTAGATCTTATCTCCTTGAGATAGT
1 TCTTATCTTCCTGAGGTAGCAAAGAAACAGACCGAAGATTATAGATCTTATCTCCCTGAGATAGC
* *** * * *
84180449 AATGGTGTAGATTGAAGACAATGAATCTTATTTTC-CCAAGGTAGCAGGGGAGCAGATTTTAGCC
66 AACGGAACAGATCGAAGACAATGAATCTTATCTTCTCCAA-GTAGCAGGGGAGAAGATTTTAGCC
* *
84180513 ACTAGCCTTATCTCCCTGAGGTAGCAAAGGTGCAGGCAGAAGATTGTAGTCTTATCTTCTTGAGG
130 ACTAGCCTTATCTCCCTGAGGTAGCAAAGGAGCAGGCAGAAGATTGTAGTCTTATCTTCTTAAGG
* * * * *
84180578 TAGCAAGGAAGTAGACTGAAGATTGTAGATCTAATCTCCTTGAGATAGCAGTGGAGTAGAATGAA
195 TAGCAAGGAAGCAGACTGAAGATTATAGATCTAATCTCCCTAAGATAGCAGTGGAGCAGAATGAA
*
84180643 GATGGCGAATCTTATCTTCCCGAGGTAGAAGGGGAGCAGATTTTAGCCACCAGCCTTACCTCCCT
260 GATGGCGAATCTTATCTTCCCGAGGTAGAAGGGGAGCAGATTTTAGCCACCAACCTTACCTCCCT
84180708 GAGGTAGCAAGAAAGCAGACTAAAGATTGAAGGTCTTATCTCCCTGAG
325 GAGGTAGCAAGAAAGCAGACTAAAGATTGAAGGTCTTATCTCCCTGAG
84180756 TTTATAGTGG
Statistics
Matches: 317, Mismatches: 46, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
443 3 0.01
444 194 0.61
445 37 0.12
446 68 0.21
447 15 0.05
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (447 bp):
TCTTATCTTCCTGAGGTAGCAAAGAAACAGACCGAAGATTATAGATCTTATCTCCCTGAGATAGC
AACGGAACAGATCGAAGACAATGAATCTTATCTTCTCCAAGTAGCAGGGGAGAAGATTTTAGCCA
CTAGCCTTATCTCCCTGAGGTAGCAAAGGAGCAGGCAGAAGATTGTAGTCTTATCTTCTTAAGGT
AGCAAGGAAGCAGACTGAAGATTATAGATCTAATCTCCCTAAGATAGCAGTGGAGCAGAATGAAG
ATGGCGAATCTTATCTTCCCGAGGTAGAAGGGGAGCAGATTTTAGCCACCAACCTTACCTCCCTG
AGGTAGCAAGAAAGCAGACTAAAGATTGAAGGTCTTATCTCCCTGAGGTAGTAAGGAAGCAAACT
GAAGATTGTAGATCTTATCTTCCTAAGAAAGCAGTGGAGTAGATCGAAGACGACGAA
Found at i:84180567 original size:44 final size:46
Alignment explanation
Indices: 84180519--84180627 Score: 125
Period size: 44 Copynumber: 2.4 Consensus size: 46
84180509 AGCCACTAGC
* * *
84180519 CTTATCTCCCTGAGGTAGCAAAGG-TGCAGGCAGAAGATTGTAG-T
1 CTTATCTCCTTGAGGTAGCAAAGGAAGCAGACAGAAGATTGTAGAT
* * *
84180563 CTTATCTTCTTGAGGTAGC-AAGGAAGTAGACTGAAGATTGTAGAT
1 CTTATCTCCTTGAGGTAGCAAAGGAAGCAGACAGAAGATTGTAGAT
* *
84180608 CTAATCTCCTTGAGATAGCA
1 CTTATCTCCTTGAGGTAGCA
84180628 GTGGAGTAGA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
43 4 0.08
44 32 0.60
45 17 0.32
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (46 bp):
CTTATCTCCTTGAGGTAGCAAAGGAAGCAGACAGAAGATTGTAGAT
Found at i:84180581 original size:178 final size:178
Alignment explanation
Indices: 84180384--84180717 Score: 506
Period size: 178 Copynumber: 1.9 Consensus size: 178
84180374 AGACGACGAA
* *
84180384 TCTTATCTTCCTGAGGTAGCAAAGAAACAGACTGAAGATTGTAGATCTTATCTCCTTGAGATAGT
1 TCTTATCTTCCTGAGGTAGCAAAGAAACAGACTGAAGATTGTAGATCTAATCTCCTTGAGATAGC
* * * * *
84180449 AATGGTGTAGATTGAAGACAATGAATCTTATTTTCCCAAGGTAGCAGGGGAGCAGATTTTAGCCA
66 AATGGAGTAGAATGAAGACAACGAATCTTATCTTCCCAAGGTAGAAGGGGAGCAGATTTTAGCCA
* *
84180514 CTAGCCTTATCTCCCTGAGGTAGCAAAGGTGCAGGCAGAAGATTGTAG
131 CCAGCCTTACCTCCCTGAGGTAGCAAAGGTGCAGGCAGAAGATTGTAG
* * **
84180562 TCTTATCTTCTTGAGGTAGCAAGGAAGTAGACTGAAGATTGTAGATCTAATCTCCTTGAGATAGC
1 TCTTATCTTCCTGAGGTAGCAAAGAAACAGACTGAAGATTGTAGATCTAATCTCCTTGAGATAGC
* *** *
84180627 AGTGGAGTAGAATGAAGATGGCGAATCTTATCTTCCCGAGGTAGAAGGGGAGCAGATTTTAGCCA
66 AATGGAGTAGAATGAAGACAACGAATCTTATCTTCCCAAGGTAGAAGGGGAGCAGATTTTAGCCA
84180692 CCAGCCTTACCTCCCTGAGGTAGCAA
131 CCAGCCTTACCTCCCTGAGGTAGCAA
84180718 GAAAGCAGAC
Statistics
Matches: 138, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
178 138 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (178 bp):
TCTTATCTTCCTGAGGTAGCAAAGAAACAGACTGAAGATTGTAGATCTAATCTCCTTGAGATAGC
AATGGAGTAGAATGAAGACAACGAATCTTATCTTCCCAAGGTAGAAGGGGAGCAGATTTTAGCCA
CCAGCCTTACCTCCCTGAGGTAGCAAAGGTGCAGGCAGAAGATTGTAG
Found at i:84180627 original size:45 final size:44
Alignment explanation
Indices: 84180551--84180645 Score: 120
Period size: 45 Copynumber: 2.1 Consensus size: 44
84180541 GGTGCAGGCA
* * * *
84180551 GAAGATTGTAGTCTTATCTTCTTGAGGTAGCAAG-GAAGTAGACT
1 GAAGATTGTAGTCTAATCTCCTTGAGATAGC-AGTGAAGTAGAAT
*
84180595 GAAGATTGTAGATCTAATCTCCTTGAGATAGCAGTGGAGTAGAAT
1 GAAGATTGTAG-TCTAATCTCCTTGAGATAGCAGTGAAGTAGAAT
84180640 GAAGAT
1 GAAGAT
84180646 GGCGAATCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
44 13 0.30
45 31 0.70
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.29
Consensus pattern (44 bp):
GAAGATTGTAGTCTAATCTCCTTGAGATAGCAGTGAAGTAGAAT
Found at i:84180736 original size:178 final size:179
Alignment explanation
Indices: 84180384--84180755 Score: 498
Period size: 178 Copynumber: 2.1 Consensus size: 179
84180374 AGACGACGAA
* *
84180384 TCTTATCTTCCTGAGGTAGCAAAGAAACAGACTGAAGATTGTAGATCTTATCTCCTTGAGATAGT
1 TCTTATCTTCCTGAGGTAGCAAAGAAACAGACTGAAGATTGTAGATCTAATCTCCTTGAGATAGC
* * * * *
84180449 AATGGTGTAGATTGAAGACAATGAATCTTATTTTCCCAAGGTAGCAGGGGAGCAGATTTTAGCCA
66 AATGGAGTAGAATGAAGACAACGAATCTTATCTTCCCAAGGTAGAAGGGGAGCAGATTTTAGCCA
* * ** * *
84180514 CTAGCCTTATCTCCCTGAGGTAGCAAAGGTGCAGGCAGAAGATTGTA-G
131 CCAGCCTTACCTCCCTGAGGTAGCAAAGAAGCAGACAGAAGATTGAAGG
* * **
84180562 TCTTATCTTCTTGAGGTAGCAAGGAAGTAGACTGAAGATTGTAGATCTAATCTCCTTGAGATAGC
1 TCTTATCTTCCTGAGGTAGCAAAGAAACAGACTGAAGATTGTAGATCTAATCTCCTTGAGATAGC
* *** *
84180627 AGTGGAGTAGAATGAAGATGGCGAATCTTATCTTCCCGAGGTAGAAGGGGAGCAGATTTTAGCCA
66 AATGGAGTAGAATGAAGACAACGAATCTTATCTTCCCAAGGTAGAAGGGGAGCAGATTTTAGCCA
84180692 CCAGCCTTACCTCCCTGAGGTAGC-AAGAAAGCAGACTA-AAGATTGAAGG
131 CCAGCCTTACCTCCCTGAGGTAGCAAAG-AAGCAGAC-AGAAGATTGAAGG
*
84180741 TCTTATCTCCCTGAG
1 TCTTATCTTCCTGAG
84180756 TTTATAGTGG
Statistics
Matches: 167, Mismatches: 24, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
177 3 0.02
178 149 0.89
179 15 0.09
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (179 bp):
TCTTATCTTCCTGAGGTAGCAAAGAAACAGACTGAAGATTGTAGATCTAATCTCCTTGAGATAGC
AATGGAGTAGAATGAAGACAACGAATCTTATCTTCCCAAGGTAGAAGGGGAGCAGATTTTAGCCA
CCAGCCTTACCTCCCTGAGGTAGCAAAGAAGCAGACAGAAGATTGAAGG
Found at i:84182695 original size:23 final size:22
Alignment explanation
Indices: 84182660--84182710 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 22
84182650 TACATTACAC
* *
84182660 TATTTTTTTAATTTATGTATAT
1 TATTTTTTAAATTAATGTATAT
84182682 TATTTATTTAAATTAATGTATAT
1 TATTT-TTTAAATTAATGTATAT
84182705 TATTTT
1 TATTTT
84182711 GTATATTACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 6 0.23
23 20 0.77
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (22 bp):
TATTTTTTAAATTAATGTATAT
Found at i:84184869 original size:47 final size:48
Alignment explanation
Indices: 84184800--84185021 Score: 239
Period size: 46 Copynumber: 4.7 Consensus size: 48
84184790 GGTGCTGATT
* * *
84184800 CCATGTCCCAGACACGGTCTTACAGTAGCTCAT-ATCTC-ATGTCGATG
1 CCATGTCCCAGACA-TGTCTTACACTAGCTCATCATCTCGATGCCGATG
84184847 CCATGTCCCAGACATCGTCTTACACT-GACT-ATCATCTCG-TAGCCGATG
1 CCATGTCCCAGACAT-GTCTTACACTAG-CTCATCATCTCGAT-GCCGATG
* * * *
84184895 -CATGTCCCAGACATGTCTTACACTGGCTTA-CGTCTCGAGGCCGATG
1 CCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCGATGCCGATG
84184941 -CATGTCCCAGACATGTCTTACACTAGCTC-TCATCTCGATGCCGATG
1 CCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCGATGCCGATG
* * *
84184987 CGATGTCCTAGACATGGTCTTACACTGGCTC-TCAT
1 CCATGTCCCAGACAT-GTCTTACACTAGCTCATCAT
84185022 AATGTGGCTG
Statistics
Matches: 152, Mismatches: 12, Indels: 21
0.82 0.06 0.11
Matches are distributed among these distances:
46 69 0.45
47 59 0.39
48 24 0.16
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (48 bp):
CCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCGATGCCGATG
Found at i:84184984 original size:92 final size:96
Alignment explanation
Indices: 84184802--84185016 Score: 273
Period size: 93 Copynumber: 2.3 Consensus size: 96
84184792 TGCTGATTCC
* * * * ** * *
84184802 ATGTCCCAGACACGGTCTTACAGTAGCTCATATCTC-ATGTCGATGCCATGTCCCAGACATCGTC
1 ATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAGGCCGATGCCATGTCCCAGACATCGTC
84184866 TTACACTGACTATCATCTCGTAGCCGATGC-
66 TTACACTGACTATCATCTCGTAGCCGATGCG
84184896 ATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGCCGATG-CATGTCCCAGACAT-GTC
1 ATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAGGCCGATGCCATGTCCCAGACATCGTC
*
84184958 TTACACT-AGCTCTCATCTCG-ATGCCGATGCG
66 TTACACTGA-CTATCATCTCGTA-GCCGATGCG
*
84184989 ATGTCCTAGACATGGTCTTACACTGGCT
1 ATGTCCCAGACATGGTCTTACACTGGCT
84185017 CTCATAATGT
Statistics
Matches: 106, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
91 2 0.02
92 28 0.26
93 43 0.41
94 33 0.31
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (96 bp):
ATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAGGCCGATGCCATGTCCCAGACATCGTC
TTACACTGACTATCATCTCGTAGCCGATGCG
Found at i:84185060 original size:94 final size:92
Alignment explanation
Indices: 84184842--84185061 Score: 223
Period size: 94 Copynumber: 2.3 Consensus size: 92
84184832 TATCTCATGT
* * *
84184842 CGATGCCATGTCCCAGACATCGTCTTACACT-GACTATCATCTCGTAGCCGATGCATGTCCCAGA
1 CGATG-CATGTCCCAAACAT-GTCCTACACTAG-CTCTCATCTCGTAGCCGATGCATGTCCCAGA
* *
84184906 CATGTCTTACACTGGCTTACGTCTCGAGGC
63 CATGTCTTACACTGGCTTACATATCGAGGC
* * *
84184936 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCG-ATGCCGATGCGATGTCCTAGAC
1 CGATGCATGTCCCAAACATGTCCTACACTAGCTCTCATCTCGTA-GCCGATGC-ATGTCCCAGAC
*
84185000 ATGGTCTTACACTGGCTCT-CATAAT-GTGGC
64 AT-GTCTTACACTGGCT-TACAT-ATCGAGGC
* * * *
84185030 TGGTGCATGTCCCAAATATGTCCTATACTAGC
1 CGATGCATGTCCCAAACATGTCCTACACTAGC
84185062 CCACAATAAT
Statistics
Matches: 109, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
91 1 0.01
92 28 0.26
93 27 0.25
94 51 0.47
95 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (92 bp):
CGATGCATGTCCCAAACATGTCCTACACTAGCTCTCATCTCGTAGCCGATGCATGTCCCAGACAT
GTCTTACACTGGCTTACATATCGAGGC
Found at i:84192511 original size:40 final size:40
Alignment explanation
Indices: 84192467--84192654 Score: 322
Period size: 40 Copynumber: 4.7 Consensus size: 40
84192457 GCAAACACAT
* * *
84192467 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
84192507 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
84192547 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
84192587 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
84192627 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
84192655 TCCAATGCTC
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:84193455 original size:25 final size:25
Alignment explanation
Indices: 84193421--84193470 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
84193411 TCTCATTTGA
84193421 AACTAGACTCATTAAGGAGTCTAAG
1 AACTAGACTCATTAAGGAGTCTAAG
84193446 AACTAGACTCATTAAGGAGTCTAAG
1 AACTAGACTCATTAAGGAGTCTAAG
84193471 CATATAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.24
Consensus pattern (25 bp):
AACTAGACTCATTAAGGAGTCTAAG
Found at i:84196424 original size:47 final size:49
Alignment explanation
Indices: 84196349--84196576 Score: 187
Period size: 47 Copynumber: 4.8 Consensus size: 49
84196339 ACGTGGGTAA
* * *
84196349 GATGCCGATGCGATGTCCCAGGCATGGTCTTACACTAGCTCAT-ATCTC
1 GATGCCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCATCATCTC
*
84196397 -ATGTCGATGCCATGTTCCAGACATGGTCTTACACT-GACT-ATCATCTC
1 GATGCCGATGCCATGTTCCAGACATGGTCTTACACTAG-CTCATCATCTC
* * * *
84196444 GTAAT--CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CGTCTC
1 G--ATGCCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCATCATCTC
* * *
84196490 GAGGCCGATG-CATG-TCCTAGACAT-GTCTTACACTAGCAC-TCGTCTC
1 GATGCCGATGCCATGTTCC-AGACATGGTCTTACACTAGCTCATCATCTC
* * *
84196536 GATGCCAATGCAATG-TCCTAGACATGGTCTTACACTGGCTC
1 GATGCCGATGCCATGTTCC-AGACATGGTCTTACACTAGCTC
84196577 TTATAATGTG
Statistics
Matches: 151, Mismatches: 16, Indels: 26
0.78 0.08 0.13
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 62 0.41
47 66 0.44
48 18 0.12
50 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (49 bp):
GATGCCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCATCATCTC
Found at i:84196490 original size:46 final size:45
Alignment explanation
Indices: 84196354--84196575 Score: 166
Period size: 46 Copynumber: 4.8 Consensus size: 45
84196344 GGTAAGATGC
* * * *
84196354 CGATGCGATGTCCCAGGCATGGTCTTACACTAGCTCATATCTC-ATGT
1 CGATGC-ATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA--T
* *
84196401 CGATGCCATGTTCCAGACATGGTCTTACACTGAC-TATCATCTCGTAAT
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTCG--AT
* *
84196449 CGATGCATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA--T
* * * *
84196495 CGATGCATGTCCTAGACAT-GTCTTACACTAGCACT-CGTCTCGAT
1 CGATGCATGTCCCAGACATGGTCTTACACTGGC-TTACATCTCGAT
* *
84196539 GCCAATGCAATGTCCTAGACATGGTCTTACACTGGCT
1 --CGATGC-ATGTCCCAGACATGGTCTTACACTGGCT
84196576 CTTATAATGT
Statistics
Matches: 145, Mismatches: 17, Indels: 26
0.77 0.09 0.14
Matches are distributed among these distances:
44 1 0.01
46 62 0.43
47 62 0.43
48 19 0.13
50 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAT
Found at i:84202918 original size:23 final size:22
Alignment explanation
Indices: 84202884--84202930 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
84202874 AGTGGATGGT
*
84202884 AATGAATGAAATT-ATAAAATAA
1 AATGAATAAAATTAAT-AAATAA
84202906 AATGTAATAAAATTAATAAATAA
1 AATG-AATAAAATTAATAAATAA
84202929 AA
1 AA
84202931 ACAAAACATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 4 0.18
23 16 0.73
24 2 0.09
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (22 bp):
AATGAATAAAATTAATAAATAA
Found at i:84206677 original size:46 final size:46
Alignment explanation
Indices: 84206627--84206802 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
84206617 TGGTTGAGCA
84206627 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
84206673 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
84206718 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
84206766 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84206803 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:84206783 original size:93 final size:93
Alignment explanation
Indices: 84206624--84206794 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
84206614 GGATGGTTGA
* *
84206624 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84206689 TGAGTCCGAGTTCATGAGATGTAACTAG
66 TGAGTCCGAGTTCATGAGATGTAACTAG
* *
84206717 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84206782 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
84206795 GCTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCATGAGATGTAACTAG
Found at i:84215890 original size:16 final size:17
Alignment explanation
Indices: 84215871--84215906 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
84215861 TCGAAATACT
84215871 AAAATGCCGAAAAG-CG
1 AAAATGCCGAAAAGTCG
*
84215887 AAAATGTCGAAAAGTCG
1 AAAATGCCGAAAAGTCG
84215904 AAA
1 AAA
84215907 GTTTGGCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.53, C:0.14, G:0.22, T:0.11
Consensus pattern (17 bp):
AAAATGCCGAAAAGTCG
Found at i:84216169 original size:29 final size:29
Alignment explanation
Indices: 84216117--84216231 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
84216107 GTGATCATGA
* *
84216117 ATATGAATGTGA-CTGGACCTAATGGGCC
1 ATATAAATGTGATCTGGGCCTAATGGGCC
84216145 ATATAAATGTGATCTGGGCCTAATGGGCC
1 ATATAAATGTGATCTGGGCCTAATGGGCC
* * * *
84216174 ATATACAGGTGATTTGGGCCTAATAGGCC
1 ATATAAATGTGATCTGGGCCTAATGGGCC
*
84216203 ATATAAA-GATGAT-TGGGCTTAATGGGCC
1 ATATAAATG-TGATCTGGGCCTAATGGGCC
84216231 A
1 A
84216232 GATACAGGTA
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
28 26 0.34
29 50 0.66
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
ATATAAATGTGATCTGGGCCTAATGGGCC
Found at i:84218021 original size:15 final size:15
Alignment explanation
Indices: 84218003--84218036 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
84217993 TATTATTTTC
84218003 ATGTTAATTATTAAT
1 ATGTTAATTATTAAT
* *
84218018 ATGTTAATTTTTATT
1 ATGTTAATTATTAAT
84218033 ATGT
1 ATGT
84218037 AGTGGGTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (15 bp):
ATGTTAATTATTAAT
Found at i:84221353 original size:21 final size:22
Alignment explanation
Indices: 84221327--84221368 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
84221317 CACTTAACAC
84221327 AGGGGC-ACACGACCGTGTGAG
1 AGGGGCAACACGACCGTGTGAG
*
84221348 AGGGGCAACACGCCCGTGTGA
1 AGGGGCAACACGACCGTGTGA
84221369 CCATTTAGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.24, C:0.26, G:0.40, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGACCGTGTGAG
Found at i:84250449 original size:43 final size:42
Alignment explanation
Indices: 84250384--84250479 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 42
84250374 TACATTGCCC
* *
84250384 ATGTCCCAGACGTGGTCCTACATGTAATCAAATATCGATGCC-
1 ATGTCCCAGACGTGGTCCTACATGAAATCAAATA-CGATACCG
*
84250426 ACTGTCCCAGACAG-GGTCTTACATGAAATCAAATACGATACCG
1 A-TGTCCCAGAC-GTGGTCCTACATGAAATCAAATACGATACCG
84250469 ATGTCCCAGAC
1 ATGTCCCAGAC
84250480 TGTAATAGCC
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
42 17 0.35
43 30 0.62
44 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (42 bp):
ATGTCCCAGACGTGGTCCTACATGAAATCAAATACGATACCG
Found at i:84263766 original size:26 final size:27
Alignment explanation
Indices: 84263736--84263786 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
84263726 TCTCATCCCA
* *
84263736 ATTTTATCCTTGGTAAA-ATTATAATG
1 ATTTTACCCTTGATAAATATTATAATG
84263762 ATTTTACCCTTGATAAATATTATAA
1 ATTTTACCCTTGATAAATATTATAA
84263787 ACTATATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (27 bp):
ATTTTACCCTTGATAAATATTATAATG
Found at i:84266068 original size:64 final size:63
Alignment explanation
Indices: 84265921--84266172 Score: 179
Period size: 68 Copynumber: 3.8 Consensus size: 63
84265911 TACAGATGGT
* * * * * * *
84265921 ATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTACAAGACAT
1 ATGTAGCTAGGTCGCATG-GTGGTACTAAGTGAACACCATGTAG-ACAAGAGAGCTAC--GAGA-
*
84265985 TATG
61 TA-A
* * * *
84265989 ATGTAGCTAGGTCGCATGGTTGATACTATGTGAACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGG-TGGTACTAAGTGAACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
84266053 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTAAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATG-GTGGTACTAAGT---GAACACCATGTAGACAAGAGAGCTACGAGAT
84266118 AA
62 AA
* **
84266120 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCAT-GGTGGTACTAAGTGAACACCATGTAG-ACAAGAGAGC
84266173 CGAACTATAT
Statistics
Matches: 151, Mismatches: 24, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.13
64 25 0.17
65 3 0.02
66 22 0.15
67 32 0.21
68 48 0.32
69 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.24
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGTGGTACTAAGTGAACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:84266997 original size:40 final size:40
Alignment explanation
Indices: 84266952--84267031 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
84266942 GTGAGTCTAG
*
84266952 TTTCAGGGGAAATTTACGGATCTTAATTTGGAGCTTTGTA
1 TTTCAGGGGAAATTTACGGATCTTAATTTGGAGCTCTGTA
84266992 TTTCAGGGGAAATTTACGGATCTTAATTTGGAGCTCTGTA
1 TTTCAGGGGAAATTTACGGATCTTAATTTGGAGCTCTGTA
84267032 GCTCGAATTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.39
Consensus pattern (40 bp):
TTTCAGGGGAAATTTACGGATCTTAATTTGGAGCTCTGTA
Found at i:84267286 original size:2 final size:2
Alignment explanation
Indices: 84267279--84267304 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
84267269 AATCATATGG
84267279 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
84267305 GACTAGTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84273245 original size:16 final size:16
Alignment explanation
Indices: 84273221--84273257 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
84273211 CTCATAATAT
*
84273221 TGAAAGAGCTCAAGTA
1 TGAATGAGCTCAAGTA
*
84273237 TGAATGAGCTCAAGTT
1 TGAATGAGCTCAAGTA
84273253 TGAAT
1 TGAAT
84273258 ATGAACAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.27
Consensus pattern (16 bp):
TGAATGAGCTCAAGTA
Found at i:84274397 original size:18 final size:18
Alignment explanation
Indices: 84274374--84274408 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
84274364 TAAAATTATA
*
84274374 ATTTTTATTATGATTTTT
1 ATTTTTATTATAATTTTT
*
84274392 ATTTTTTTTATAATTTT
1 ATTTTTATTATAATTTT
84274409 AAATTATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (18 bp):
ATTTTTATTATAATTTTT
Found at i:84275012 original size:23 final size:23
Alignment explanation
Indices: 84274960--84275016 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
84274950 TTTCTCTCTC
*
84274960 CAAGGTTAGGGCTTTTTATTTTT
1 CAAGGTTAGGGCGTTTTATTTTT
* *
84274983 TATGGTTAGGG-GTTTTATTTTAT
1 CAAGGTTAGGGCGTTTTATTTT-T
84275006 CAAGGTTAGGG
1 CAAGGTTAGGG
84275017 TTAGGATTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
22 9 0.32
23 19 0.68
ACGTcount: A:0.19, C:0.05, G:0.28, T:0.47
Consensus pattern (23 bp):
CAAGGTTAGGGCGTTTTATTTTT
Found at i:84275017 original size:22 final size:21
Alignment explanation
Indices: 84274960--84275018 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 21
84274950 TTTCTCTCTC
84274960 CAAGGTTAGGGCTTTTTATTTTT
1 CAAGGTTAGGG--TTTTATTTTT
* *
84274983 TATGGTTAGGGGTTTTATTTTAT
1 CAAGGTTA-GGGTTTTATTTT-T
84275006 CAAGGTTAGGGTT
1 CAAGGTTAGGGTT
84275019 AGGATTTAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
22 14 0.47
23 13 0.43
24 3 0.10
ACGTcount: A:0.19, C:0.05, G:0.27, T:0.49
Consensus pattern (21 bp):
CAAGGTTAGGGTTTTATTTTT
Found at i:84282469 original size:93 final size:93
Alignment explanation
Indices: 84282310--84282481 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
84282300 CGCCCATAAG
*** *
84282310 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAGCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGAAATTCGCAGCCATAAGTGAACTCGGACTCAACTCA
84282375 ACGAGTTCAGATGCCTAGTTACATTTCA
66 ACGAGTTCAGATGCCTAGTTACATTTCA
* *
84282403 CGAACTCGGACTCAACTCAACGAGTTCGGAAATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGAAATTCGCAGCCATAAGTGAACTCGGACTCAACTCA
*
84282468 ACGAGTTCGGATGC
66 ACGAGTTCAGATGC
84282482 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGAAATTCGCAGCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATTTCA
Found at i:84282471 original size:46 final size:46
Alignment explanation
Indices: 84282303--84282478 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
84282293 TGTAACCCGC
* *** *
84282303 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAAATTCGCAT
* * * *
84282349 CCATAGGTGAACTCGGACTCAACTCAACGAGTTC--AGATGC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAAATTCGC-A--T
* *
84282395 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGAAATTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGAAATTCGCAT
*
84282442 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
84282479 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 62 0.60
47 29 0.28
48 1 0.01
49 5 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAAATTCGCAT
Found at i:84282497 original size:46 final size:45
Alignment explanation
Indices: 84282311--84282497 Score: 125
Period size: 46 Copynumber: 4.0 Consensus size: 45
84282301 GCCCATAAGC
* * * * *
84282311 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAGCCA--TAGGT
1 GAACTCGGACTCAACTCAACGAGTTC-GG-ATGCTCAACCATCTA-GT
* * *
84282357 GAACTCGGACTCAACTCAACGAGTTCAGATGC-CTAGTTA-CATTTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-AGT
* * * *
84282404 GAACTCGGACTCAACTCAACGAGTTCGGAAATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCTAGT
84282450 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAGT
84282496 GA
1 GA
84282498 CATGTCACTT
Statistics
Matches: 112, Mismatches: 15, Indels: 28
0.72 0.10 0.18
Matches are distributed among these distances:
43 1 0.01
44 12 0.11
45 2 0.02
46 60 0.54
47 30 0.27
48 1 0.01
49 5 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAGT
Found at i:84287111 original size:17 final size:17
Alignment explanation
Indices: 84287089--84287123 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
84287079 ACTCAATGAG
84287089 GAATCTATACATATAAA
1 GAATCTATACATATAAA
84287106 GAATCTATACATATAAA
1 GAATCTATACATATAAA
84287123 G
1 G
84287124 TATAACTCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.11, G:0.09, T:0.29
Consensus pattern (17 bp):
GAATCTATACATATAAA
Found at i:84287835 original size:16 final size:16
Alignment explanation
Indices: 84287816--84287846 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84287806 CTTCTTCACT
84287816 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
84287832 TACTTACTTACTTAA
1 TACTCACTTACTTAA
84287847 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:84287852 original size:20 final size:20
Alignment explanation
Indices: 84287813--84287852 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
84287803 AAACTTCTTC
* *
84287813 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
84287833 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
84287853 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:84290566 original size:40 final size:40
Alignment explanation
Indices: 84290474--84290676 Score: 324
Period size: 40 Copynumber: 5.2 Consensus size: 40
84290464 GGACTAAGAT
* *
84290474 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCT--GTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
84290512 TCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTT
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
84290552 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
84290592 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
84290632 CCGAAGGCATTTGT-CGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
84290670 CCGAAGG
1 CCGAAGG
84290677 TACTTGGGTT
Statistics
Matches: 155, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
38 47 0.30
39 14 0.09
40 94 0.61
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:84290627 original size:80 final size:80
Alignment explanation
Indices: 84290462--84290676 Score: 330
Period size: 78 Copynumber: 2.7 Consensus size: 80
84290452 CGGATGATAA
* * * * *
84290462 CCGGACTAAGATCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCT--GTCTCGAAGGCATTTG
1 CCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
84290525 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
84290540 CCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
84290605 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
* * *
84290620 CCGGGCTAAGTCCCGAAGGCATTTGT-CGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
84290677 TACTTGGGTT
Statistics
Matches: 127, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
78 58 0.46
79 14 0.11
80 55 0.43
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAT
Found at i:84306273 original size:26 final size:26
Alignment explanation
Indices: 84306242--84306349 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
84306232 TGAAATGCCC
*
84306242 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
84306268 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
84306294 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
84306320 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
84306346 ATCA
1 ATCA
84306350 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:84312730 original size:91 final size:91
Alignment explanation
Indices: 84312592--84312799 Score: 335
Period size: 91 Copynumber: 2.3 Consensus size: 91
84312582 TTGATTTTAG
* *
84312592 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
84312657 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
84312684 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
84312749 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
84312775 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
84312800 GTTATAATTA
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
91 92 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:84312768 original size:26 final size:28
Alignment explanation
Indices: 84312714--84312774 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
84312704 TATTATCAAG
* *
84312714 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
84312742 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
84312768 AATTATA
1 AATTATA
84312775 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:84312774 original size:44 final size:43
Alignment explanation
Indices: 84312632--84312774 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
84312622 GAATTTTATG
* *
84312632 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
84312676 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
84312723 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
84312767 AAATTATA
1 AAATTATA
84312775 CAAATTCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:84312892 original size:59 final size:57
Alignment explanation
Indices: 84312826--84313014 Score: 152
Period size: 59 Copynumber: 3.2 Consensus size: 57
84312816 ATTTTATTAA
84312826 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTAT-TTTTATAGT
* * ** * *
84312885 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATT-TTATTA-A--
1 ATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATTTTTATAGT
* * * *
84312946 ATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTAT-TTTTATAGT
84313005 ATCATATATT
1 ATCATATATT
84313015 ATGATTTGAG
Statistics
Matches: 99, Mismatches: 17, Indels: 28
0.69 0.12 0.19
Matches are distributed among these distances:
54 14 0.14
55 7 0.07
56 5 0.05
57 3 0.03
59 20 0.20
60 8 0.08
61 10 0.10
63 4 0.04
64 5 0.05
65 6 0.06
66 17 0.17
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (57 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATTTTTATAGT
Found at i:84312923 original size:66 final size:64
Alignment explanation
Indices: 84312853--84313051 Score: 186
Period size: 66 Copynumber: 3.2 Consensus size: 64
84312843 AAATATATTT
84312853 AATATTAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
84312918 G
64 G
* * * * * **
84312919 AATATTAATTATTAAGAATT-TTATTA-A--ATTATATATT-TTAATT-A-T-AA-T-ATAT-TT
1 AATATTAATTATTTA-AATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
* *
84312973 AATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTAT-TTAAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
84313038 G
64 G
*
84313039 AATATTGATTATT
1 AATATTAATTATT
84313052 AAGAATTTTA
Statistics
Matches: 101, Mismatches: 18, Indels: 29
0.68 0.12 0.20
Matches are distributed among these distances:
54 14 0.14
55 7 0.07
56 5 0.05
57 3 0.03
58 1 0.01
59 10 0.10
60 8 0.08
61 10 0.10
62 1 0.01
63 3 0.03
64 5 0.05
65 7 0.07
66 27 0.27
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (64 bp):
AATATTAATTATTTAAATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:84312939 original size:120 final size:120
Alignment explanation
Indices: 84312815--84313112 Score: 517
Period size: 120 Copynumber: 2.5 Consensus size: 120
84312805 AATTATTTTA
* * *
84312815 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
84312879 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
84312935 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
*
84313000 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
84313055 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
84313113 ATGATTAAAT
Statistics
Matches: 168, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
120 161 0.96
121 7 0.04
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:84312955 original size:61 final size:61
Alignment explanation
Indices: 84312888--84313075 Score: 192
Period size: 61 Copynumber: 3.1 Consensus size: 61
84312878 TTATAGTATC
84312888 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * *
84312949 ATATATT-TTAATT-A-T-AATAT-ATTTAATAATAATTATGTTAATTTA-TATTTTA-TAGTAT
1 ATATATTATGATTTGAGTAAAT-TCATATAAGAAT-ATTA-ATT-ATTAAGAATTTTATTA-AAT
*
84313007 C
61 T
*
84313008 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
84313069 ATATATT
1 ATATATT
84313076 TTAATTAAAA
Statistics
Matches: 96, Mismatches: 19, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
57 11 0.11
58 8 0.08
59 18 0.19
60 16 0.17
61 25 0.26
62 7 0.07
63 11 0.11
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:84312975 original size:15 final size:15
Alignment explanation
Indices: 84312940--84312991 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
84312930 TTAAGAATTT
*
84312940 TATTAAATTAT-ATA
1 TATTTAATTATAATA
84312954 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
84312968 TATTTAATAATAAT-
1 TATTTAATTATAATA
84312982 TATGTTAATT
1 TAT-TTAATT
84312992 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:84313084 original size:18 final size:17
Alignment explanation
Indices: 84313056--84313090 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
84313046 ATTATTAAGA
*
84313056 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
84313073 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
84313091 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:84313320 original size:44 final size:45
Alignment explanation
Indices: 84313255--84313345 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
84313245 ACCTCTATTC
* * *
84313255 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
84313299 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
84313344 CA
1 CA
84313346 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:84313347 original size:16 final size:16
Alignment explanation
Indices: 84313326--84313394 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
84313316 GATTAGCTAT
84313326 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
84313342 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
84313359 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
84313375 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
84313391 TACA
1 TACA
84313395 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:84313368 original size:33 final size:32
Alignment explanation
Indices: 84313326--84313394 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
84313316 GATTAGCTAT
84313326 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
84313359 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
84313391 TACA
1 TACA
84313395 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:84313446 original size:27 final size:27
Alignment explanation
Indices: 84313411--84313586 Score: 167
Period size: 27 Copynumber: 6.4 Consensus size: 27
84313401 CAAACGCACC
* *
84313411 CTAAGTGTGCGGTTTGACTATGTTGCA
1 CTAAGTGTGCGATTTGACTATGTAGCA
** *
84313438 CTAAGTGTGCGAAATGAATATG-ATGCA
1 CTAAGTGTGCGATTTGACTATGTA-GCA
* **
84313465 CTAAGTGTGCGAATTGA-TCATGCGGCA
1 CTAAGTGTGCGATTTGACT-ATGTAGCA
84313492 CTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGA-TTTGACTATGTAGCA
* *
84313520 CTAAGTGTGCGATTTGATTACGTAGCA
1 CTAAGTGTGCGATTTGACTATGTAGCA
* * *
84313547 CTAAGTGTGCGAGTTGATTATATATAGCA
1 CTAAGTGTGCGATTTGA--CTATGTAGCA
*
84313576 CTGAGTGTGCG
1 CTAAGTGTGCG
84313587 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 84 0.67
28 22 0.18
29 18 0.14
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
CTAAGTGTGCGATTTGACTATGTAGCA
Found at i:84313531 original size:55 final size:55
Alignment explanation
Indices: 84313435--84313586 Score: 159
Period size: 55 Copynumber: 2.8 Consensus size: 55
84313425 TGACTATGTT
** * *
84313435 GCACTAAGTGTGCGA-AATGAATATGATGCACTAAGTGTGCGAATTGATCATGCG
1 GCACTAAGTGTGCGAGTTTGAATATGATGCACTAAGTGTGCGAATTGATCACGCA
* * * *
84313489 GCACTAAGTGTGCGAGTTTGACTATG-TAGCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGTTTGAATATGAT-GCACTAAGTGTGCGAATTGATCACGCA
*
84313544 GCACTAAGTGTGCGAG-TTGATTATAT-ATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTTGA--ATATGAT-GCACTAAGTGTGCG
84313587 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
54 20 0.24
55 45 0.54
56 18 0.22
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (55 bp):
GCACTAAGTGTGCGAGTTTGAATATGATGCACTAAGTGTGCGAATTGATCACGCA
Found at i:84313548 original size:82 final size:81
Alignment explanation
Indices: 84313411--84313564 Score: 229
Period size: 82 Copynumber: 1.9 Consensus size: 81
84313401 CAAACGCACC
* *
84313411 CTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCG
1 CTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGTGCG
84313476 AATTGATCATGCGGCA
66 AATTGATCATGCGGCA
** *
84313492 CTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGTGTG
1 CTAAGTGTGCG-GTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGTGTG
*
84313556 CGAGTTGAT
64 CGAATTGAT
84313565 TATATATAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 12 0.18
82 53 0.82
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (81 bp):
CTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGTGCG
AATTGATCATGCGGCA
Found at i:84313597 original size:29 final size:29
Alignment explanation
Indices: 84313542--84313597 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
84313532 TTTGATTACG
* * *
84313542 TAGCACTAAGTGTGCGAGTTGATTATATA
1 TAGCACTAAGTGTGCGAGCTCAATATATA
* *
84313571 TAGCACTGAGTGTGCGGGCTCAATATA
1 TAGCACTAAGTGTGCGAGCTCAATATA
84313598 CATTCGTGAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (29 bp):
TAGCACTAAGTGTGCGAGCTCAATATATA
Found at i:84321546 original size:1 final size:1
Alignment explanation
Indices: 84321503--84321531 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
84321493 TTTCAATCTG
84321503 CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
84321532 AACACTTGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:84325586 original size:17 final size:17
Alignment explanation
Indices: 84325558--84325603 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
84325548 ATTAAGAATT
84325558 TTATTGAAATTATATTCA
1 TTATT-AAATTATATTCA
*
84325576 TTATTAAATTATATTTA
1 TTATTAAATTATATTCA
*
84325593 ATATT-AATTAT
1 TTATTAAATTAT
84325604 TTTAAATGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 6 0.23
17 15 0.58
18 5 0.19
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (17 bp):
TTATTAAATTATATTCA
Done.