Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 248 of 373
Found at i:84325633 original size:86 final size:88
Alignment explanation
Indices: 84325542--84325713 Score: 235
Period size: 89 Copynumber: 2.0 Consensus size: 88
84325532 TTAAGAACAT
* * * *
84325542 TTTATTATTAAGAATTTTATTGAAATTAT-AT-TCATT-ATTAAATTATATTTAATATTAATTAT
1 TTTATTATCAAGAATTTTA-TGAAATTATCATATCATTAATGAAATTATATGTAATAATAATTAT
*
84325604 TTTAAATGTATA-ATTCATATAGAA
65 TTTAAAT-TATACAATCATATAGAA
*
84325628 TTTATTATCAAGAATTTTATGAAATTATCATATTATTAAATGAAATTATATGTAATAATAATTAT
1 TTTATTATCAAGAATTTTATGAAATTATCATATCATT-AATGAAATTATATGTAATAATAATTAT
84325693 TTTAAATTATACAATCATATA
65 TTTAAATTATACAATCATATA
84325714 AGATAATTTA
Statistics
Matches: 75, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
85 9 0.12
86 20 0.27
87 4 0.05
88 4 0.05
89 38 0.51
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (88 bp):
TTTATTATCAAGAATTTTATGAAATTATCATATCATTAATGAAATTATATGTAATAATAATTATT
TTAAATTATACAATCATATAGAA
Found at i:84326118 original size:27 final size:27
Alignment explanation
Indices: 84325995--84326144 Score: 141
Period size: 26 Copynumber: 5.7 Consensus size: 27
84325985 AATTATATTC
* *
84325995 TATGT-GCACTAAGTGTGCGA-ATGAA
1 TATGTAGCACTAAGTGTGCGATTTGAT
* *
84326020 TATG-ATGCACT-AGTGTGCGAATTGAC
1 TATGTA-GCACTAAGTGTGCGATTTGAT
* * * *
84326046 CATG-CGCACTAAGTGTGCGGTTTGAC
1 TATGTAGCACTAAGTGTGCGATTTGAT
84326072 TATGTAGCA-TAAGTGTGCGATTTGAT
1 TATGTAGCACTAAGTGTGCGATTTGAT
* *
84326098 TACGTAGCACTAAGTGTGCGAGTTGAT
1 TATGTAGCACTAAGTGTGCGATTTGAT
* *
84326125 TATATAGCACTGAGTGTGCG
1 TATGTAGCACTAAGTGTGCG
84326145 GACTCAATAT
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
25 18 0.17
26 50 0.48
27 36 0.35
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.31
Consensus pattern (27 bp):
TATGTAGCACTAAGTGTGCGATTTGAT
Found at i:84333504 original size:12 final size:12
Alignment explanation
Indices: 84333487--84333513 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
84333477 ATTCCGAAGT
84333487 ATATATATATAC
1 ATATATATATAC
84333499 ATATATATATAC
1 ATATATATATAC
84333511 ATA
1 ATA
84333514 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:84334019 original size:27 final size:27
Alignment explanation
Indices: 84333988--84334165 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
84333978 TAAATTGTAC
84333988 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
84334015 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
84334041 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
84334069 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
84334097 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
84334124 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
84334151 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84334166 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:84334102 original size:82 final size:81
Alignment explanation
Indices: 84333989--84334144 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
84333979 AAATTGTACA
* *
84333989 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
84334053 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
84334070 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
84334135 TGCGAGTTGA
65 TGCGAATTGA
84334145 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:84334156 original size:82 final size:81
Alignment explanation
Indices: 84333985--84334165 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
84333975 GATTAAATTG
* *
84333985 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
84334050 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
84334066 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
84334130 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
84334148 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
84334166 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:84339495 original size:10 final size:10
Alignment explanation
Indices: 84339472--84339516 Score: 65
Period size: 10 Copynumber: 4.5 Consensus size: 10
84339462 ATTCTAGAAA
84339472 ATAAATACAA-
1 ATAAATA-AAG
84339482 ATAAATAAAG
1 ATAAATAAAG
*
84339492 ATAATTAAAG
1 ATAAATAAAG
84339502 ATAAATAAAG
1 ATAAATAAAG
84339512 ATAAA
1 ATAAA
84339517 AGCTAAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
9 2 0.06
10 30 0.94
ACGTcount: A:0.69, C:0.02, G:0.07, T:0.22
Consensus pattern (10 bp):
ATAAATAAAG
Found at i:84340587 original size:7 final size:7
Alignment explanation
Indices: 84340586--84340636 Score: 59
Period size: 7 Copynumber: 7.0 Consensus size: 7
84340576 TTTTTAATTT
84340586 TTTAAATA
1 TTTA-ATA
84340594 TTT-ATA
1 TTTAATA
*
84340600 TTATATTA
1 TT-TAATA
84340608 TTTTAATA
1 -TTTAATA
84340616 TTTAATA
1 TTTAATA
84340623 TTTAATA
1 TTTAATA
84340630 TTTAATA
1 TTTAATA
84340637 ATTTTATGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
6 5 0.13
7 22 0.58
8 9 0.24
9 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TTTAATA
Found at i:84340618 original size:22 final size:22
Alignment explanation
Indices: 84340578--84340636 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
84340568 TCATACTATT
*
84340578 TTTAATTTTTTAAATATTT-ATA
1 TTTAATATTTT-AATATTTAATA
*
84340600 TTATATTATTTTAATATTTAATA
1 TT-TAATATTTTAATATTTAATA
84340623 TTTAATA-TTTAATA
1 TTTAATATTTTAATA
84340637 ATTTTATGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 7 0.22
22 13 0.41
23 12 0.38
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
TTTAATATTTTAATATTTAATA
Found at i:84342377 original size:22 final size:22
Alignment explanation
Indices: 84342349--84342393 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
84342339 AAAAAATTAC
84342349 TTTTTTTACTATTTTGTTGCTA
1 TTTTTTTACTATTTTGTTGCTA
*
84342371 TTTTTTTACTGTTTTGTTGCTA
1 TTTTTTTACTATTTTGTTGCTA
84342393 T
1 T
84342394 GTTCTTGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.11, C:0.09, G:0.11, T:0.69
Consensus pattern (22 bp):
TTTTTTTACTATTTTGTTGCTA
Found at i:84349162 original size:25 final size:26
Alignment explanation
Indices: 84349131--84349179 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
84349121 TTGTTAGTAC
84349131 TCTTAAAAA-ATAAAAATAAAATTAT
1 TCTTAAAAATATAAAAATAAAATTAT
*
84349156 TCTTAAAAATTTAAAAATAAAATT
1 TCTTAAAAATATAAAAATAAAATT
84349180 TTAAATTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (26 bp):
TCTTAAAAATATAAAAATAAAATTAT
Found at i:84360229 original size:43 final size:42
Alignment explanation
Indices: 84360182--84360302 Score: 111
Period size: 42 Copynumber: 2.8 Consensus size: 42
84360172 CCTCGATTGA
*
84360182 GATTTACATATAAGACCATGTCTAGGACATCGGCATC-ATATTT
1 GATTTACATGTAAGACCATGTCT-GGACATCGGCATCAATA-TT
* * **
84360225 GATTT-CGTGTAAGACCCTGTCTGGGACAGAGGCATCAATATT
1 GATTTACATGTAAGACCATGTCT-GGACATCGGCATCAATATT
* * * *
84360267 GAATTACATGTAAAACCACGTCTGAGACTTCGGCAT
1 GATTTACATGTAAGACCATGTCTG-GACATCGGCAT
84360303 TGTACTTGTT
Statistics
Matches: 61, Mismatches: 14, Indels: 6
0.75 0.17 0.07
Matches are distributed among these distances:
42 32 0.52
43 29 0.48
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (42 bp):
GATTTACATGTAAGACCATGTCTGGACATCGGCATCAATATT
Found at i:84360300 original size:85 final size:85
Alignment explanation
Indices: 84360144--84360302 Score: 189
Period size: 85 Copynumber: 1.9 Consensus size: 85
84360134 GTCTGAGACG
* * * * *
84360144 TCGTGTAAGACCGTGTCTTGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTAGGA
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAAACCACGTCTAGGA
84360209 CATCGGCATCATATTTGATT
66 CATCGGCATCATATTTGATT
* * *
84360229 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCAATATTGA-A-TTACATGTAAAACCACGTCT-G
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATC--GATTGAGATTTACATATAAAACCACGTCTAG
*
84360291 AGACTTCGGCAT
64 -GACATCGGCAT
84360303 TGTACTTGTT
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
84 1 0.02
85 55 0.89
86 1 0.02
87 5 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAAACCACGTCTAGGA
CATCGGCATCATATTTGATT
Found at i:84368879 original size:43 final size:43
Alignment explanation
Indices: 84368831--84368976 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
84368821 TTGGTTTTCA
84368831 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
84368874 GCACTAAGTGTGCGGGCAATAAGTGTTCATGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
84368917 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
84368960 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
84368977 TTGAAATGCA
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 101 1.00
ACGTcount: A:0.23, C:0.14, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:84368993 original size:29 final size:29
Alignment explanation
Indices: 84368958--84369031 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
84368948 GTTGTGAGAT
* *
84368958 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
84368987 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
84369016 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
84369032 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:84369465 original size:40 final size:40
Alignment explanation
Indices: 84369342--84369697 Score: 378
Period size: 40 Copynumber: 8.9 Consensus size: 40
84369332 TCGAATGATG
** *
84369342 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
84369382 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
* * *
84369422 TCCGGGCTAAGTCCTGAAGAGCATTCATGCTAGCGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
84369462 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
84369502 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
84369542 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
84369582 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
84369622 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
84369662 TCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
84369698 CGTGTATTCG
Statistics
Matches: 270, Mismatches: 42, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.00
40 251 0.93
41 18 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:84369555 original size:120 final size:120
Alignment explanation
Indices: 84369342--84369692 Score: 422
Period size: 120 Copynumber: 2.9 Consensus size: 120
84369332 TCGAATGATG
* * *
84369342 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGGGCTAAGATCCGAAGAGCA
* * * * *
84369404 TTGGTGCGAGTTACTAAATCCGGGCTAAGTCCTGAAGAGCATTCATGCTAGCGATGTA
64 TTCGTGCTAGTGA-TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
* * *
84369462 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGATCCGAAGAGCATT
* * * *
84369527 CATGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
66 CGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
* * * *
84369582 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAA-ACCCCAAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGA-TCCGAAGAGCAT
* * * * *
84369646 TCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGTAATCATGCT
65 TCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
84369693 GGTGACGTGT
Statistics
Matches: 197, Mismatches: 30, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
120 172 0.87
121 19 0.10
122 6 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGATCCGAAGAGCATT
CGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
Found at i:84373250 original size:25 final size:25
Alignment explanation
Indices: 84373222--84373300 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
84373212 CTAATGGCCG
84373222 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
84373247 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
84373269 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
84373294 ATGTGAT
1 ATGTGAT
84373301 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:84373272 original size:47 final size:48
Alignment explanation
Indices: 84373209--84373433 Score: 382
Period size: 49 Copynumber: 4.7 Consensus size: 48
84373199 ATGATAGTAT
84373209 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
84373256 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
*
84373303 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
*
84373352 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
*
84373401 GGCCTAATAGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
84373434 CCCGAAGGGC
Statistics
Matches: 173, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
47 80 0.46
49 89 0.51
50 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (48 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
Found at i:84373273 original size:38 final size:40
Alignment explanation
Indices: 84373229--84373364 Score: 119
Period size: 47 Copynumber: 3.0 Consensus size: 40
84373219 CCGATGTGAT
84373229 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC-----G
84373274 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 --GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC-----G
*
84373321 ATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 --GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
84373365 ATGTGATGAA
Statistics
Matches: 86, Mismatches: 1, Indels: 7
0.91 0.01 0.07
Matches are distributed among these distances:
44 1 0.01
47 60 0.70
49 25 0.29
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (40 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:84373378 original size:96 final size:95
Alignment explanation
Indices: 84373209--84373433 Score: 380
Period size: 96 Copynumber: 2.3 Consensus size: 95
84373199 ATGATAGTAT
84373209 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
84373274 ATGAATGTGAAAGTG-TATATATGTGATAA
66 ATGAATGTGAAAGTGATATATATGTGATAA
*
84373303 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATG
*
84373368 TGATGAATGTGAAAGTGTATATATATGTGATAG
64 TGATGAATGTGAAAGTG-ATATATATGTGATAA
*
84373401 GGCCTAATAGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
84373434 CCCGAAGGGC
Statistics
Matches: 123, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
94 33 0.27
96 46 0.37
98 40 0.33
99 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (95 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGATATATATGTGATAA
Found at i:84373607 original size:37 final size:37
Alignment explanation
Indices: 84373551--84373629 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
84373541 CCGAGCTCTA
* * *
84373551 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
84373588 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
84373625 AAGAC
1 AAGAC
84373630 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:84385205 original size:46 final size:46
Alignment explanation
Indices: 84385138--84385308 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 46
84385128 CGCCCCTAAG
* * *
84385138 TGAACTCAGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAA
1 TGAACTCAGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
* * * * **
84385184 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCTCA
1 TGAACTCAGACTCAACTCAACGAGTTCGGATG-TTAGCATCCAT-AAA
* * ** * *
84385231 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCAGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
84385277 TGAACTCAGACTCAACTCAACGAGTTCGGATG
1 TGAACTCAGACTCAACTCAACGAGTTCGGATG
84385309 CTCAACCATC
Statistics
Matches: 99, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
46 63 0.64
47 36 0.36
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TGAACTCAGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
Found at i:84385250 original size:93 final size:93
Alignment explanation
Indices: 84385139--84385309 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
84385129 GCCCCTAAGT
*** *
84385139 GAACTCAGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
84385204 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
84385232 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
84385297 CGAGTTCGGATGC
66 CGAGTTCGGATGC
84385310 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:84385763 original size:30 final size:30
Alignment explanation
Indices: 84385729--84385788 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
84385719 ATTTAATACG
84385729 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
84385759 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
84385789 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:84387147 original size:6 final size:6
Alignment explanation
Indices: 84387125--84387162 Score: 60
Period size: 6 Copynumber: 6.3 Consensus size: 6
84387115 AAGAATGAAT
84387125 AAAAGA AATAA-A AAAAGA AAAAGA AAAAGA AAAAGA AA
1 AAAAGA AA-AAGA AAAAGA AAAAGA AAAAGA AAAAGA AA
84387163 GGCACGAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 2 0.07
6 26 0.87
7 2 0.07
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (6 bp):
AAAAGA
Found at i:84389720 original size:26 final size:26
Alignment explanation
Indices: 84389691--84389750 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
84389681 TCCGTTTGAA
* * *
84389691 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
84389717 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
84389745 CCATTC
1 TCATTC
84389751 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:84389736 original size:28 final size:28
Alignment explanation
Indices: 84389705--84389776 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
84389695 TCGATATTTT
*
84389705 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
84389733 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
84389761 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
84389777 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:84394777 original size:28 final size:28
Alignment explanation
Indices: 84394743--84394897 Score: 132
Period size: 28 Copynumber: 5.5 Consensus size: 28
84394733 AACTGATCTT
*
84394743 GCACACACAGTGCTTGGTTACGGAACTC
1 GCACACACAGTGCTCGGTTACGGAACTC
***** * * *
84394771 GCACACACAGTGCCTTAACAACTGATCTT
1 GCACACACAGTG-CTCGGTTACGGAACTC
*
84394800 GCACACACAGTGCTCGGTTACGAAACTC
1 GCACACACAGTGCTCGGTTACGGAACTC
**** *
84394828 GCACACACAGTGCCTCAACAATC-GATCTC
1 GCACACACAGTG-CTCGGTTA-CGGAACTC
84394857 GCACACACAGTGCTCGGTTACGGAACTC
1 GCACACACAGTGCTCGGTTACGGAACTC
*
84394885 ACACACACAGTGC
1 GCACACACAGTGC
84394898 CTATGTTCAC
Statistics
Matches: 95, Mismatches: 28, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
27 1 0.01
28 52 0.55
29 41 0.43
30 1 0.01
ACGTcount: A:0.29, C:0.33, G:0.19, T:0.19
Consensus pattern (28 bp):
GCACACACAGTGCTCGGTTACGGAACTC
Found at i:84394803 original size:57 final size:57
Alignment explanation
Indices: 84394713--84394899 Score: 286
Period size: 57 Copynumber: 3.2 Consensus size: 57
84394703 GATCTCATTT
* *
84394713 CACACACTTAGTGCCCCAACAACTGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
1 CACACAC--AGTGCCTCAACAACTGATCTTGCACACACAGTGCTCGGTTACGGAACTCG
* *
84394772 CACACACAGTGCCTTAACAACTGATCTTGCACACACAGTGCTCGGTTACGAAACTCG
1 CACACACAGTGCCTCAACAACTGATCTTGCACACACAGTGCTCGGTTACGGAACTCG
* *
84394829 CACACACAGTGCCTCAACAA-TCGATCTCGCACACACAGTGCTCGGTTACGGAACTCA
1 CACACACAGTGCCTCAACAACT-GATCTTGCACACACAGTGCTCGGTTACGGAACTCG
84394886 CACACACAGTGCCT
1 CACACACAGTGCCT
84394900 ATGTTCACTT
Statistics
Matches: 119, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
56 1 0.01
57 111 0.93
59 7 0.06
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.20
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACTGATCTTGCACACACAGTGCTCGGTTACGGAACTCG
Found at i:84394859 original size:29 final size:28
Alignment explanation
Indices: 84394768--84394869 Score: 107
Period size: 29 Copynumber: 3.6 Consensus size: 28
84394758 GGTTACGGAA
*
84394768 CTCGCACACACAGTGCCTTAACAACTGAT
1 CTCGCACACACAGTGCCTCAACAAC-GAT
* **** *
84394797 CTTGCACACACAGTG-CTCGGTTACGAAA
1 CTCGCACACACAGTGCCTCAACAACG-AT
84394825 CTCGCACACACAGTGCCTCAACAATCGAT
1 CTCGCACACACAGTGCCTCAACAA-CGAT
84394854 CTCGCACACACAGTGC
1 CTCGCACACACAGTGC
84394870 TCGGTTACGG
Statistics
Matches: 57, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
27 1 0.02
28 19 0.33
29 35 0.61
30 2 0.04
ACGTcount: A:0.29, C:0.35, G:0.17, T:0.19
Consensus pattern (28 bp):
CTCGCACACACAGTGCCTCAACAACGAT
Found at i:84396890 original size:26 final size:26
Alignment explanation
Indices: 84396861--84396921 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 26
84396851 TTCCATTTGA
* * *
84396861 GTCATTCGATATTTTGCACACTAAGT
1 GTCATTCAATATATCGCACACTAAGT
84396887 GTCATTCTCAATATATCGCACACTAAGT
1 GTCA-T-TCAATATATCGCACACTAAGT
*
84396915 GCCATTC
1 GTCATTC
84396922 TCAATATTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 6 0.21
27 2 0.07
28 21 0.72
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (26 bp):
GTCATTCAATATATCGCACACTAAGT
Found at i:84396907 original size:28 final size:28
Alignment explanation
Indices: 84396876--84396947 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
84396866 TCGATATTTT
*
84396876 GCACACTAAGTGTCATTCTCAATATATC
1 GCACACTAAGTGCCATTCTCAATATATC
*
84396904 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATATC
* * *
84396932 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
84396948 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATATC
Found at i:84401253 original size:30 final size:30
Alignment explanation
Indices: 84401219--84401275 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
84401209 TACGAGAATT
*
84401219 GGGGT-AAAAGTGAAAATATGTGAAAATTTA
1 GGGGTCAAAA-TGAAAATATGTAAAAATTTA
*
84401249 GGGGTCAAAATGAAAATTTGTAAAAAT
1 GGGGTCAAAATGAAAATATGTAAAAAT
84401276 ATGATTTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.47, C:0.02, G:0.25, T:0.26
Consensus pattern (30 bp):
GGGGTCAAAATGAAAATATGTAAAAATTTA
Found at i:84405287 original size:26 final size:26
Alignment explanation
Indices: 84405257--84405309 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
84405247 TTCCATGATC
84405257 TTAATGTTAGACGAATGTGTTGTCAG
1 TTAATGTTAGACGAATGTGTTGTCAG
84405283 TTAATGTTAGACGAATGTGTTGTCAG
1 TTAATGTTAGACGAATGTGTTGTCAG
84405309 T
1 T
84405310 CTAAATGGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.08, G:0.26, T:0.40
Consensus pattern (26 bp):
TTAATGTTAGACGAATGTGTTGTCAG
Found at i:84405638 original size:15 final size:15
Alignment explanation
Indices: 84405590--84405672 Score: 76
Period size: 15 Copynumber: 5.5 Consensus size: 15
84405580 GTATTATAAT
*
84405590 TTGGATTTCCTTATC
1 TTGGATTTCTTTATC
*
84405605 ATGGATTTCTTTATC
1 TTGGATTTCTTTATC
*
84405620 TTGGATTTCTTTATT
1 TTGGATTTCTTTATC
** ***
84405635 TTGGGCTTCTCCGTC
1 TTGGATTTCTTTATC
* *
84405650 TCGGATTTCTCTATC
1 TTGGATTTCTTTATC
84405665 TTGGATTT
1 TTGGATTT
84405673 TCTGATTATC
Statistics
Matches: 52, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 52 1.00
ACGTcount: A:0.12, C:0.18, G:0.17, T:0.53
Consensus pattern (15 bp):
TTGGATTTCTTTATC
Found at i:84418395 original size:51 final size:51
Alignment explanation
Indices: 84418340--84418448 Score: 121
Period size: 51 Copynumber: 2.1 Consensus size: 51
84418330 AAAATAGACT
***
84418340 TGTGACCAAAGCTATCTTTTACACATAGT-GTCTTACACTTAGTACCACACA
1 TGTGACCAAAGCTATCGGGTACACATAGTAG-CTTACACTTAGTACCACACA
* * * * *
84418391 TGTGATCGAAGCTATCGGGTACGCATAGTAGCTTGCACTTAGTACTACACA
1 TGTGACCAAAGCTATCGGGTACACATAGTAGCTTACACTTAGTACCACACA
*
84418442 CGTGACC
1 TGTGACC
84418449 TAAAACCATT
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
51 46 0.98
52 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (51 bp):
TGTGACCAAAGCTATCGGGTACACATAGTAGCTTACACTTAGTACCACACA
Found at i:84430517 original size:17 final size:17
Alignment explanation
Indices: 84430470--84430519 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
84430460 TTCACTCCTA
* *
84430470 TCCTTTCTTTTCCTCTTT
1 TCCTTTCTATT-CTATTT
84430488 T-CTTTCTCA-TCTATTT
1 TCCTTTCT-ATTCTATTT
84430504 TCCTTTCTATTCTATT
1 TCCTTTCTATTCTATT
84430520 CTTCTCCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
16 7 0.26
17 19 0.70
18 1 0.04
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (17 bp):
TCCTTTCTATTCTATTT
Found at i:84436308 original size:35 final size:35
Alignment explanation
Indices: 84436261--84436422 Score: 180
Period size: 35 Copynumber: 4.6 Consensus size: 35
84436251 AATACTCAAG
* *
84436261 GTTCATTATATCATCACATATGGCCAAATATACAA
1 GTTCAATATATCATCACATATGGTCAAATATACAA
* * * *
84436296 GTACAATATATCATCATATATGATCGAATATACAA
1 GTTCAATATATCATCACATATGGTCAAATATACAA
* * * * * *
84436331 GCTCAATAAAACATCACATGTAGTCAAATATTCAA
1 GTTCAATATATCATCACATATGGTCAAATATACAA
* * * *
84436366 GTTTAATATAACATCACATGTGGACAAATATACAA
1 GTTCAATATATCATCACATATGGTCAAATATACAA
84436401 GTTCAATATATCATCACATATG
1 GTTCAATATATCATCACATATG
84436423 TACATACCTA
Statistics
Matches: 102, Mismatches: 25, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
35 102 1.00
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.30
Consensus pattern (35 bp):
GTTCAATATATCATCACATATGGTCAAATATACAA
Found at i:84438616 original size:28 final size:28
Alignment explanation
Indices: 84438576--84438757 Score: 312
Period size: 28 Copynumber: 6.5 Consensus size: 28
84438566 TAAATTGTAC
84438576 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
84438604 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
84438632 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
84438660 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
84438688 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
84438716 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
84438743 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84438758 GACTTAATAT
Statistics
Matches: 150, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
27 24 0.16
28 126 0.84
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:84447328 original size:28 final size:28
Alignment explanation
Indices: 84447288--84447379 Score: 175
Period size: 28 Copynumber: 3.3 Consensus size: 28
84447278 TAAATTGTAC
84447288 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
84447316 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
84447344 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
84447372 AGCACTAA
1 AGCACTAA
84447380 TCCATATGCT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:84453595 original size:42 final size:42
Alignment explanation
Indices: 84453442--84453608 Score: 203
Period size: 42 Copynumber: 4.0 Consensus size: 42
84453432 AACCATACCA
* ** * *
84453442 ATGCCATATCCCAGATATGGTCTTACATGGGATCTTATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAACG
* * * *
84453484 ATGCCAATAACCCAGCTATGGTCTTACACG-ATTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATAACG
*
84453526 ATGCCATGTCCCAGATATGGTCTTACACGAAATCTCATAACG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAACG
*
84453568 ATGCCATATCTCAGATATGGTCTTACACGTAAA-CTCATAAC
1 ATGCCATATCCCAGATATGGTCTTACACG-AAATCTCATAAC
84453609 CCTAATGTCA
Statistics
Matches: 109, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
41 21 0.19
42 64 0.59
43 24 0.22
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAACG
Found at i:84463719 original size:37 final size:37
Alignment explanation
Indices: 84463659--84463734 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
84463649 TATTACGAAA
** * *
84463659 TCTTACCCGGACCTAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
84463696 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
84463733 TC
1 TC
84463735 CTTAGAACTC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:84463934 original size:47 final size:47
Alignment explanation
Indices: 84463855--84464117 Score: 357
Period size: 47 Copynumber: 5.6 Consensus size: 47
84463845 CCCTTCGGGA
* * * * *
84463855 CTTATCACATTTATGCACTTTCACA-TCAATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTC-ATCACATCGGCCATTAGGC
* * * *
84463902 CCTGTCACATATATACACTTTCACATTCATCACATCGCCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
84463949 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
84463996 CTTATCACATATATATACACGTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84464045 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84464092 CTTATCACATATATACACTTTCACAT
1 CTTATCACATATATACACTTTCACAT
84464118 ATGGGTTTAA
Statistics
Matches: 190, Mismatches: 23, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
47 146 0.77
48 2 0.01
49 42 0.22
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:84464050 original size:96 final size:96
Alignment explanation
Indices: 84463910--84464106 Score: 340
Period size: 96 Copynumber: 2.1 Consensus size: 96
84463900 GCCCTGTCAC
* *
84463910 ATATATACACTTTCACATTCATCACATCGCCCATTAAGCCTTATCACGCATATACACTTTCACAT
1 ATATATACACGTTCACATTCATCACATCGCCCATTAAGCCTTATCACACATATACACTTTCACAT
84463975 TCATCACATCGGCCATTAAGCCTTATCACAT
66 TCATCACATCGGCCATTAAGCCTTATCACAT
* * *
84464006 ATATATACACGTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACAT
1 ATATATACACGTTCACATTCATCACATCGCCCATTAAGCCTTATCACACATATACACTTTCACAT
*
84464071 TCATCACATCGGCCATTAGGCCTTATCACAT
66 TCATCACATCGGCCATTAAGCCTTATCACAT
84464102 ATATA
1 ATATA
84464107 CACTTTCACA
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 95 1.00
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.31
Consensus pattern (96 bp):
ATATATACACGTTCACATTCATCACATCGCCCATTAAGCCTTATCACACATATACACTTTCACAT
TCATCACATCGGCCATTAAGCCTTATCACAT
Found at i:84464066 original size:143 final size:141
Alignment explanation
Indices: 84463855--84464117 Score: 375
Period size: 143 Copynumber: 1.9 Consensus size: 141
84463845 CCCTTCGGGA
* * * * * *
84463855 CTTATCACATTTATGCACTTTCACATCAATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATTTATACACGTTCACATCAATCACATCGGCCACTAGGCCCTATCACACATATACAC
*
84463920 TTTCACATTCATCACATCGCCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGCCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACATC
84463985 GGCCATTAAGC
131 GGCCATTAAGC
* * *
84463996 CTTATCACATATATATACACGTTCACATTC-ATCACATCGGCTATTAGGCCTTATCACACATATA
1 CTTATCACAT-T-TATACACGTTCACA-TCAATCACATCGGCCACTAGGCCCTATCACACATATA
* * *
84464060 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
63 CACTTTCACATTCATCACATCGCCCATTAAGCCTTATCACACATATACACTTTCACAT
84464118 ATGGGTTTAA
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
141 10 0.09
142 1 0.01
143 93 0.88
144 2 0.02
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATTTATACACGTTCACATCAATCACATCGGCCACTAGGCCCTATCACACATATACAC
TTTCACATTCATCACATCGCCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACATC
GGCCATTAAGC
Found at i:84467472 original size:40 final size:40
Alignment explanation
Indices: 84467428--84467543 Score: 124
Period size: 40 Copynumber: 2.9 Consensus size: 40
84467418 GAATACATGT
* * *
84467428 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* * ***
84467468 CACCAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* * **
84467508 CACTAGCACGAATGCTCTTCGAAATTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGAT
84467544 TTAGTAACTC
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
Found at i:84467576 original size:80 final size:80
Alignment explanation
Indices: 84467454--84467664 Score: 200
Period size: 80 Copynumber: 2.6 Consensus size: 80
84467444 CTTCGGGACC
* * ** * *
84467454 TAGCCCGGATATAAC-AC-CAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCTC-ACTAGCA
1 TAGCCCGGATATATCAACTC-GCACAAATGC-CTTCGGGTCTTAGCCCGGATACATCAACTAGCA
84467516 CGAA-TGCTCTTCGAAAT-T
64 C-AATTGC-CTTCG-AATCT
* * * *
84467534 TAGCCCGGATTTAGT-AACTCGCACCAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCAC
1 TAGCCCGGATATA-TCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATACATCAACTAGCAC
**
84467598 AATTGCCTTCGGGTCT
65 AATTGCCTTCGAATCT
* *
84467614 TAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCAGATA
1 TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATA
84467665 TCATTCAAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
79 2 0.02
80 85 0.78
81 21 0.19
82 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (80 bp):
TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATACATCAACTAGCACA
ATTGCCTTCGAATCT
Found at i:84467577 original size:40 final size:40
Alignment explanation
Indices: 84467533--84467665 Score: 189
Period size: 40 Copynumber: 3.3 Consensus size: 40
84467523 TCTTCGAAAT
*
84467533 TTAGCCCGGATTTAGT-AACTCGCACCAATGCCTTCGGGTC
1 TTAGCCCGGATATA-TCAACTCGCACCAATGCCTTCGGGTC
*
84467573 TTAGCCCGGATATATCAACTTGCA-CAATTGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTCGCACCAA-TGCCTTCGGGTC
* *
84467613 TTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTCGCACCAATGCCTTCGGGTC
*
84467653 TTAGCCCAGATAT
1 TTAGCCCGGATAT
84467666 CATTCAAATG
Statistics
Matches: 84, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
39 4 0.05
40 78 0.93
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (40 bp):
TTAGCCCGGATATATCAACTCGCACCAATGCCTTCGGGTC
Found at i:84467994 original size:29 final size:29
Alignment explanation
Indices: 84467955--84468033 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
84467945 CTTAATAATC
*
84467955 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
84467985 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
84468014 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
84468034 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:84468076 original size:43 final size:43
Alignment explanation
Indices: 84468015--84468108 Score: 179
Period size: 43 Copynumber: 2.2 Consensus size: 43
84468005 TGCATTTCAA
84468015 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
84468058 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
84468101 GCTCGCAC
1 GCCCGCAC
84468109 CGTGAACACT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:84468113 original size:22 final size:22
Alignment explanation
Indices: 84468085--84468130 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
84468075 CAATCTCACA
84468085 ACCGTGAACACTTATTGCTCGC
1 ACCGTGAACACTTATTGCTCGC
84468107 ACCGTGAACACTTATTGCTCGC
1 ACCGTGAACACTTATTGCTCGC
84468129 AC
1 AC
84468131 ACTTAGTTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (22 bp):
ACCGTGAACACTTATTGCTCGC
Found at i:84468146 original size:65 final size:65
Alignment explanation
Indices: 84468042--84468173 Score: 246
Period size: 65 Copynumber: 2.0 Consensus size: 65
84468032 CAATCTCACA
84468042 ACCGTGAACACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCTCGC
1 ACCGTGAACACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCTCGC
* *
84468107 ACCGTGAACACTTATTGCTCGCACACTTAGTTCCAATCTCACAACCGTGAACACTTATTGCTCGC
1 ACCGTGAACACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCTCGC
84468172 AC
1 AC
84468174 ACTTAGTGCC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.27, C:0.33, G:0.14, T:0.26
Consensus pattern (65 bp):
ACCGTGAACACTTATTGCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCTCGC
Found at i:84468153 original size:108 final size:108
Alignment explanation
Indices: 84468018--84468216 Score: 380
Period size: 108 Copynumber: 1.8 Consensus size: 108
84468008 ATTTCAAGCC
84468018 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCCGCACACTTAGTGCCAATCTCA
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCCGCACACTTAGTGCCAATCTCA
84468083 CAACCGTGAACACTTATTGCTCGCACCGTGAACACTTATTGCT
66 CAACCGTGAACACTTATTGCTCGCACCGTGAACACTTATTGCT
* *
84468126 CGCACACTTAGTTCCAATCTCACAACCGTGAACACTTATTGCTCGCACACTTAGTGCCAATCTCA
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCCGCACACTTAGTGCCAATCTCA
84468191 CAACCGTGAACACTTATTGCTCGCAC
66 CAACCGTGAACACTTATTGCTCGCAC
84468217 ACTTAGTGCC
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
108 89 1.00
ACGTcount: A:0.27, C:0.34, G:0.14, T:0.25
Consensus pattern (108 bp):
CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCCGCACACTTAGTGCCAATCTCA
CAACCGTGAACACTTATTGCTCGCACCGTGAACACTTATTGCT
Found at i:84468168 original size:43 final size:43
Alignment explanation
Indices: 84468107--84468311 Score: 401
Period size: 43 Copynumber: 4.8 Consensus size: 43
84468097 TATTGCTCGC
*
84468107 ACCGTGAACACTTATTGCTCGCACACTTAGTTCCAATCTCACA
1 ACCGTGAACACTTATTGCTCGCACACTTAGTGCCAATCTCACA
84468150 ACCGTGAACACTTATTGCTCGCACACTTAGTGCCAATCTCACA
1 ACCGTGAACACTTATTGCTCGCACACTTAGTGCCAATCTCACA
84468193 ACCGTGAACACTTATTGCTCGCACACTTAGTGCCAATCTCACA
1 ACCGTGAACACTTATTGCTCGCACACTTAGTGCCAATCTCACA
84468236 ACCGTGAACACTTATTGCTCGCACACTTAGTGCCAATCTCACA
1 ACCGTGAACACTTATTGCTCGCACACTTAGTGCCAATCTCACA
84468279 ACCGTGAACACTTATTGCTCGCACACTTAGTGC
1 ACCGTGAACACTTATTGCTCGCACACTTAGTGC
84468312 TGAAAACCAA
Statistics
Matches: 161, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 161 1.00
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.26
Consensus pattern (43 bp):
ACCGTGAACACTTATTGCTCGCACACTTAGTGCCAATCTCACA
Found at i:84470225 original size:37 final size:37
Alignment explanation
Indices: 84470165--84470240 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
84470155 TATTACGAAA
** * *
84470165 TCTTACCCGGACCTAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
84470202 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
84470239 TC
1 TC
84470241 CTTAGAACTC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:84470439 original size:47 final size:47
Alignment explanation
Indices: 84470361--84470670 Score: 440
Period size: 47 Copynumber: 6.6 Consensus size: 47
84470351 CCCTTCGGGA
* * * * * **
84470361 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* * *
84470408 CCTGTCACATATATACACTTTCACATTCATCACATCGCCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
84470455 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
84470502 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
84470549 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
84470598 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
84470645 CTTATCACATATATACACTTTCACAT
1 CTTATCACATATATACACTTTCACAT
84470671 ATGGGTTTAA
Statistics
Matches: 239, Mismatches: 22, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
47 196 0.82
49 43 0.18
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:84470617 original size:143 final size:141
Alignment explanation
Indices: 84470361--84470670 Score: 449
Period size: 143 Copynumber: 2.2 Consensus size: 141
84470351 CCCTTCGGGA
** * * ** *
84470361 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTAAGCCCTATCACATATATACAC
*
84470426 TTTCACATTCATCACATCGCCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGCCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACATC
84470491 GGCCATTAAGC
131 GGCCATTAAGC
* * * *
84470502 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTAAGCCCTATCAC--ATATATAC
* * *
84470567 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGCCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACA
*
84470632 TCGGCCATTAGGC
129 TCGGCCATTAAGC
*
84470645 CTTATCACATATATACACTTTCACAT
1 CTTATCACACATATACACTTTCACAT
84470671 ATGGGTTTAA
Statistics
Matches: 149, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
141 44 0.30
143 105 0.70
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTAAGCCCTATCACATATATACAC
TTTCACATTCATCACATCGCCCATTAAGCCTTATCACACATATACACTTTCACATTCATCACATC
GGCCATTAAGC
Found at i:84474205 original size:33 final size:33
Alignment explanation
Indices: 84474163--84474261 Score: 128
Period size: 33 Copynumber: 3.0 Consensus size: 33
84474153 AGTGAATAAC
* *
84474163 ACAGTCTGGGCCTAGGCTCTATTCAGTATCAGT
1 ACAGTCTGGGCCTAAGCCCTATTCAGTATCAGT
*
84474196 ACAGTCTGGGCCTAAGCCCTATTTAGTATCAGT
1 ACAGTCTGGGCCTAAGCCCTATTCAGTATCAGT
* * *
84474229 ACAATCTGGGCCCT-AGCCCTATACAGTAACAGT
1 ACAGTCTGGG-CCTAAGCCCTATTCAGTATCAGT
84474262 GTGTGCCTCA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
33 55 0.95
34 3 0.05
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (33 bp):
ACAGTCTGGGCCTAAGCCCTATTCAGTATCAGT
Found at i:84474678 original size:27 final size:27
Alignment explanation
Indices: 84474613--84474680 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
84474603 GGGCATAATC
*
84474613 GTCATTTTACCATATAGGGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
*
84474640 GTCATTTTACCCTATAGGGGTATTATG
1 GTCATTTTACCCTATAGGGGTATTACG
84474667 GTCATTTTACCCTA
1 GTCATTTTACCCTA
84474681 CAAGAGCGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTACG
Found at i:84474696 original size:27 final size:27
Alignment explanation
Indices: 84474634--84474698 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
84474624 ATATAGGGGT
* * * *
84474634 ATTACGGTCATTTTACCCTATAGGGGT
1 ATTACGGTCATTTTACCCTACAAGAGC
*
84474661 ATTATGGTCATTTTACCCTACAAGAGC
1 ATTACGGTCATTTTACCCTACAAGAGC
*
84474688 GTTACGGTCAT
1 ATTACGGTCAT
84474699 ATAACGACCT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
ATTACGGTCATTTTACCCTACAAGAGC
Found at i:84483725 original size:21 final size:21
Alignment explanation
Indices: 84483701--84483770 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
84483691 TATATGTCTC
* *
84483701 TGTTTTCTGTTCAAAATCATT
1 TGTTTTCTTTTGAAAATCATT
*
84483722 TGTTCTCTTTTGAAAATC-TT
1 TGTTTTCTTTTGAAAATCATT
* *
84483742 CTATTTTCTTTTGAAAATCAAT
1 -TGTTTTCTTTTGAAAATCATT
*
84483764 AGTTTTC
1 TGTTTTC
84483771 CATTGTATTT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
20 2 0.05
21 36 0.92
22 1 0.03
ACGTcount: A:0.24, C:0.14, G:0.09, T:0.53
Consensus pattern (21 bp):
TGTTTTCTTTTGAAAATCATT
Found at i:84486660 original size:29 final size:29
Alignment explanation
Indices: 84486555--84486699 Score: 114
Period size: 29 Copynumber: 5.1 Consensus size: 29
84486545 AAAGTGAGCT
* * *
84486555 TTTGTTGCTATCTCTATTAAAGGAA-GAC
1 TTTGTGGCTATCTCTATTAAAAGAATGTC
* * * *
84486583 TTTGTGTCTGTCTCTTTTAAAAGGATGTC
1 TTTGTGGCTATCTCTATTAAAAGAATGTC
* * *
84486612 TTTATGGCTATTTCTGTTAAAAGAATGTC
1 TTTGTGGCTATCTCTATTAAAAGAATGTC
* *
84486641 TTTGTGGCTATCTCAATTAAATGAATG-C
1 TTTGTGGCTATCTCTATTAAAAGAATGTC
* * * * * *
84486669 ATTGTAGCAAACTCTGTTAAAAGGATGTC
1 TTTGTGGCTATCTCTATTAAAAGAATGTC
84486698 TT
1 TT
84486700 CATGGCGAGA
Statistics
Matches: 88, Mismatches: 27, Indels: 3
0.75 0.23 0.03
Matches are distributed among these distances:
28 39 0.44
29 49 0.56
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.41
Consensus pattern (29 bp):
TTTGTGGCTATCTCTATTAAAAGAATGTC
Found at i:84500091 original size:29 final size:29
Alignment explanation
Indices: 84500058--84500117 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
84500048 TTAAATAGAT
84500058 ATTTTTATGGAAACTTAAAGAATCATCTC
1 ATTTTTATGGAAACTTAAAGAATCATCTC
84500087 ATTTTTATGGAAACTTAAAGAATCATCTC
1 ATTTTTATGGAAACTTAAAGAATCATCTC
84500116 AT
1 AT
84500118 ATTTCTCTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.38
Consensus pattern (29 bp):
ATTTTTATGGAAACTTAAAGAATCATCTC
Found at i:84502530 original size:21 final size:21
Alignment explanation
Indices: 84502506--84502546 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
84502496 AATCCAATCC
84502506 AATA-AACAAGATAATTTATCT
1 AATATAACAAGAT-ATTTATCT
*
84502527 AATATAACATGATATTTATC
1 AATATAACAAGATATTTATC
84502547 ATTTTCAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.49, C:0.10, G:0.05, T:0.37
Consensus pattern (21 bp):
AATATAACAAGATATTTATCT
Found at i:84509618 original size:19 final size:20
Alignment explanation
Indices: 84509578--84509618 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
84509568 CTAAACTGAT
*
84509578 AACTTAGAAAATTTTTTGAA
1 AACTTAGAAAATTTTTTCAA
84509598 AACTTAGAAAA-TTTTTCAA
1 AACTTAGAAAATTTTTTCAA
84509617 AA
1 AA
84509619 TACAAGGGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.49, C:0.07, G:0.07, T:0.37
Consensus pattern (20 bp):
AACTTAGAAAATTTTTTCAA
Found at i:84512712 original size:27 final size:27
Alignment explanation
Indices: 84512682--84512860 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
84512672 ATATTGAGCC
* * * *
84512682 CGCACACTCAGTGCTATATAATCATCT
1 CGCACACTTAGTGCTACATAGTCATAT
* * *
84512709 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCATAT
*
84512736 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCATA-T
** *
84512764 CGCACACTTAGTGCCGCATGGTCA-ATT
1 CGCACACTTAGTGCTACATAGTCATA-T
* *
84512791 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCATAT
*
84512818 CGCACACTTAGTGCAACATAGTCATAT
1 CGCACACTTAGTGCTACATAGTCATAT
84512845 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
84512861 TACAATTTAA
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCATAT
Found at i:84512821 original size:82 final size:81
Alignment explanation
Indices: 84512708--84512858 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
84512698 TATAATCATC
* *
84512708 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
84512773 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* ** *
84512790 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
84512854 AGTGC
65 AGTGC
84512859 TATACAATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:84513425 original size:13 final size:13
Alignment explanation
Indices: 84513407--84513431 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84513397 TACTAAATTT
84513407 TCATGGATTCAAG
1 TCATGGATTCAAG
84513420 TCATGGATTCAA
1 TCATGGATTCAA
84513432 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:84528726 original size:27 final size:26
Alignment explanation
Indices: 84528695--84528872 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
84528685 TAAATTGTAC
84528695 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
84528722 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
84528748 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
* *
84528776 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
*
84528804 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
84528831 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
84528858 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84528873 GACTCGATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 24 0.19
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:84528812 original size:82 final size:81
Alignment explanation
Indices: 84528696--84528851 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
84528686 AAATTGTACA
* * *
84528696 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
84528760 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
84528777 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
84528842 TGCGAGTTGA
65 TGCGAATTGA
84528852 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.73
83 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:84528863 original size:82 final size:81
Alignment explanation
Indices: 84528692--84528872 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
84528682 GATTAAATTG
* * *
84528692 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
84528757 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
84528773 TGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
84528837 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
84528855 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
84528873 GACTCGATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:84536792 original size:27 final size:27
Alignment explanation
Indices: 84536758--84536908 Score: 153
Period size: 27 Copynumber: 5.6 Consensus size: 27
84536748 TAAATTGTAC
*
84536758 AGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGAATATGT
** *
84536784 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGAATATGT
* *
84536812 GGCACTAAGTGTGCGAGTCT-AACTATGT
1 AGCACTAAGTGTGCGAAT-TGAA-TATGT
* *
84536840 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGAATTGAATATGT
* * *
84536867 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGAATATGT
*
84536894 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84536909 GACTCGATAT
Statistics
Matches: 106, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
26 1 0.01
27 84 0.79
28 21 0.20
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGAATATGT
Found at i:84536855 original size:55 final size:54
Alignment explanation
Indices: 84536757--84536908 Score: 164
Period size: 55 Copynumber: 2.8 Consensus size: 54
84536747 TTAAATTGTA
* *
84536757 CAGCACTAAGTGTGCGAAATGAA-TATGAT-GCACTAAGTGTGCGAATTGACCATG
1 CAGCACTAAGTGTGCG-AGTTAACTAT-ATAGCACTAAGTGTGCGAATTGACCATG
* * * **
84536811 CGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTATG
1 CAGCACTAAGTGTGCGAGT-TAACTATATAGCACTAAGTGTGCGAATTGACCATG
* * * *
84536866 TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCGAGTTAACTATATAGCACTAAGTGTGCG
84536909 GACTCGATAT
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
53 2 0.02
54 38 0.46
55 42 0.51
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (54 bp):
CAGCACTAAGTGTGCGAGTTAACTATATAGCACTAAGTGTGCGAATTGACCATG
Found at i:84536899 original size:82 final size:82
Alignment explanation
Indices: 84536758--84536908 Score: 196
Period size: 82 Copynumber: 1.8 Consensus size: 82
84536748 TAAATTGTAC
* *
84536758 AGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTG
1 AGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTG
84536823 TGCGAGTCTAACTATGT
66 TGCGAGTCTAACTATGT
** * * ** * *
84536840 AGCACTAAGTGTGCGATTTGATTATG-TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATACAGCACTAAGT
84536904 GTGCG
65 GTGCG
84536909 GACTCGATAT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
81 1 0.02
82 57 0.98
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTG
TGCGAGTCTAACTATGT
Found at i:84557668 original size:17 final size:17
Alignment explanation
Indices: 84557646--84557678 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
84557636 ATATTAAATG
*
84557646 AAGTTCAGTAAAAACTT
1 AAGTTCAATAAAAACTT
84557663 AAGTTCAATAAAAACT
1 AAGTTCAATAAAAACT
84557679 CAAATAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.12, G:0.09, T:0.27
Consensus pattern (17 bp):
AAGTTCAATAAAAACTT
Found at i:84571899 original size:28 final size:28
Alignment explanation
Indices: 84571867--84571970 Score: 104
Period size: 28 Copynumber: 3.8 Consensus size: 28
84571857 TTTGGTCCTT
*
84571867 TTAGGCCCAATCTCACTCATATGGCCCA
1 TTAGGCCCAATCACACTCATATGGCCCA
**
84571895 TTAGGCCCAAATCACTTTCATATGGCCCA
1 TTAGGCCC-AATCACACTCATATGGCCCA
* * *
84571924 -TCGACCC-ATCACATTCATATGGCCCA
1 TTAGGCCCAATCACACTCATATGGCCCA
* * *
84571950 TCAGCCCCAATCACATTCATA
1 TTAGGCCCAATCACACTCATA
84571971 GTCATGCAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 18 0.28
27 4 0.06
28 25 0.39
29 17 0.27
ACGTcount: A:0.28, C:0.36, G:0.12, T:0.25
Consensus pattern (28 bp):
TTAGGCCCAATCACACTCATATGGCCCA
Found at i:84571941 original size:26 final size:28
Alignment explanation
Indices: 84571872--84571970 Score: 121
Period size: 26 Copynumber: 3.6 Consensus size: 28
84571862 TCCTTTTAGG
* * * *
84571872 CCCAATCTCACTCATATGGCCCATTAGG
1 CCCAATCACATTCATATGGCCCATCAGA
*
84571900 CCCAAATCACTTTCATATGGCCCATC-GA
1 CCC-AATCACATTCATATGGCCCATCAGA
*
84571928 CCC-ATCACATTCATATGGCCCATCAGC
1 CCCAATCACATTCATATGGCCCATCAGA
84571955 CCCAATCACATTCATA
1 CCCAATCACATTCATA
84571971 GTCATGCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
26 20 0.33
27 4 0.07
28 19 0.31
29 18 0.30
ACGTcount: A:0.28, C:0.37, G:0.10, T:0.24
Consensus pattern (28 bp):
CCCAATCACATTCATATGGCCCATCAGA
Found at i:84572202 original size:8 final size:8
Alignment explanation
Indices: 84572189--84572228 Score: 62
Period size: 8 Copynumber: 5.0 Consensus size: 8
84572179 AAACTTCTGA
84572189 CTTTTCGG
1 CTTTTCGG
84572197 CTTTTCGG
1 CTTTTCGG
84572205 CTTTTCGG
1 CTTTTCGG
*
84572213 CTTTTTGG
1 CTTTTCGG
*
84572221 CATTTCGG
1 CTTTTCGG
84572229 GATTTTGCCG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.03, C:0.23, G:0.25, T:0.50
Consensus pattern (8 bp):
CTTTTCGG
Found at i:84573777 original size:20 final size:20
Alignment explanation
Indices: 84573740--84573792 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
84573730 GAGGCAAAGC
*** *
84573740 ACACGCCCGTGTGGCTGAGG
1 ACACGCCCGTGCCCCTGAGA
*
84573760 ACATGCCCGTGCCCCTGAGA
1 ACACGCCCGTGCCCCTGAGA
84573780 ACACGCCCGTGCC
1 ACACGCCCGTGCC
84573793 TCGCACCCGT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.17, C:0.40, G:0.30, T:0.13
Consensus pattern (20 bp):
ACACGCCCGTGCCCCTGAGA
Found at i:84579860 original size:10 final size:10
Alignment explanation
Indices: 84579845--84579900 Score: 71
Period size: 10 Copynumber: 5.8 Consensus size: 10
84579835 TGCAAATATG
*
84579845 TCAAAACTAA
1 TCAAAATTAA
84579855 TCAAAATTAA
1 TCAAAATTAA
*
84579865 TTAAAATTAA
1 TCAAAATTAA
84579875 T-AAAA-TAA
1 TCAAAATTAA
84579883 TCAAAATTAA
1 TCAAAATTAA
*
84579893 TTAAAATT
1 TCAAAATT
84579901 CAACATGTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
8 4 0.10
9 8 0.20
10 29 0.71
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (10 bp):
TCAAAATTAA
Found at i:84591014 original size:19 final size:19
Alignment explanation
Indices: 84590982--84591027 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
84590972 ACAACATATA
* * *
84590982 ATAATGTCACATTATTTAC
1 ATAATATCAAATTATTCAC
84591001 ATAATATCAAATTATTCAC
1 ATAATATCAAATTATTCAC
84591020 ATATATAT
1 ATA-ATAT
84591028 ATACTTACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.43, C:0.13, G:0.02, T:0.41
Consensus pattern (19 bp):
ATAATATCAAATTATTCAC
Found at i:84593658 original size:15 final size:15
Alignment explanation
Indices: 84593631--84593692 Score: 79
Period size: 15 Copynumber: 4.1 Consensus size: 15
84593621 GATAACCGAG
84593631 TAAAGAAATCCAAGA
1 TAAAGAAATCCAAGA
* *
84593646 TAGAGAAACCCAAGA
1 TAAAGAAATCCAAGA
*
84593661 TAAAGAAATCCAAAA
1 TAAAGAAATCCAAGA
* *
84593676 TAAAAAAAACCAAGA
1 TAAAGAAATCCAAGA
84593691 TA
1 TA
84593693 CGATACTATA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 39 1.00
ACGTcount: A:0.63, C:0.15, G:0.11, T:0.11
Consensus pattern (15 bp):
TAAAGAAATCCAAGA
Found at i:84593666 original size:30 final size:30
Alignment explanation
Indices: 84593631--84593692 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
84593621 GATAACCGAG
* * * *
84593631 TAAAGAAATCCAAGATAGAGAAACCCAAGA
1 TAAAGAAATCCAAAATAAAAAAAACCAAGA
84593661 TAAAGAAATCCAAAATAAAAAAAACCAAGA
1 TAAAGAAATCCAAAATAAAAAAAACCAAGA
84593691 TA
1 TA
84593693 CGATACTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.63, C:0.15, G:0.11, T:0.11
Consensus pattern (30 bp):
TAAAGAAATCCAAAATAAAAAAAACCAAGA
Found at i:84598785 original size:46 final size:46
Alignment explanation
Indices: 84598735--84598906 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
84598725 TAAGGATCCA
84598735 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * *
84598781 AACTCGTTAAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
84598828 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* *
84598874 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84598907 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 58 0.55
47 28 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:84598894 original size:93 final size:93
Alignment explanation
Indices: 84598730--84598899 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
84598720 ATGGTTAAGG
* *
84598730 ATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTAAGTTG
1 ATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGTTG
84598795 AGTCCGAGTTCGTGAGATGTAACTAGGC
66 AGTCCGAGTTCGTGAGATGTAACTAGGC
* * *
84598823 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
1 ATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGTTG
84598888 AGTCCGAGTTCG
66 AGTCCGAGTTCG
84598900 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
ATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAGTTG
AGTCCGAGTTCGTGAGATGTAACTAGGC
Found at i:84605574 original size:46 final size:46
Alignment explanation
Indices: 84605524--84605697 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 46
84605514 GTTGAGCATT
84605524 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * *
84605570 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TC
* *
84605617 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* *
84605663 CGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84605698 GTGGGTTACA
Statistics
Matches: 109, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:84605683 original size:93 final size:93
Alignment explanation
Indices: 84605519--84605690 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
84605509 GGATGGTTGA
* * *
84605519 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84605584 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
84605612 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84605677 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
84605691 CTTATGGGTG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:84607430 original size:22 final size:22
Alignment explanation
Indices: 84607405--84607454 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
84607395 GTATATATAT
84607405 TGTGATTGTCATCGAAATGATA
1 TGTGATTGTCATCGAAATGATA
84607427 TGTGATTGTCATCGAAATGATA
1 TGTGATTGTCATCGAAATGATA
84607449 TGTGAT
1 TGTGAT
84607455 ATGTTTATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.30, C:0.08, G:0.24, T:0.38
Consensus pattern (22 bp):
TGTGATTGTCATCGAAATGATA
Found at i:84613147 original size:12 final size:12
Alignment explanation
Indices: 84613130--84613155 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
84613120 TTAAAATCCT
84613130 AAAAACACTCTC
1 AAAAACACTCTC
84613142 AAAAACACTCTC
1 AAAAACACTCTC
84613154 AA
1 AA
84613156 GAGGGAGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.31, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAAACACTCTC
Found at i:84615728 original size:39 final size:39
Alignment explanation
Indices: 84615674--84615910 Score: 411
Period size: 39 Copynumber: 6.1 Consensus size: 39
84615664 ATGCAAGACA
*
84615674 CTGGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
84615713 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
84615752 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
84615791 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
84615830 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
84615869 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
84615908 CTG
1 CTG
84615911 ATAATATAAT
Statistics
Matches: 187, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 187 1.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:84625060 original size:40 final size:41
Alignment explanation
Indices: 84624925--84625110 Score: 243
Period size: 41 Copynumber: 4.6 Consensus size: 41
84624915 TACTCAAATG
* *
84624925 ATATCCGGACTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
84624966 ATATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
84625007 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGCGACT
* * *
84625047 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
84625087 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
84625111 CTTGTGCGAG
Statistics
Matches: 130, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 62 0.48
41 66 0.51
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
Found at i:84625069 original size:81 final size:82
Alignment explanation
Indices: 84624927--84625080 Score: 249
Period size: 81 Copynumber: 1.9 Consensus size: 82
84624917 CTCAAATGAT
* * *
84624927 ATCCGGACTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTATATCTGGGCTAAGTCCCGAAGGCTT
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
*
84624992 TTGTGCTAAGCGACTAC
66 TTATGCTAAGCGACTAC
84625009 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATCCGGACTAAG-TCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
84625072 TTTATGCTA
65 TTTATGCTA
84625081 GTGACCATAT
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
81 38 0.57
82 28 0.42
83 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (82 bp):
ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
TTATGCTAAGCGACTAC
Found at i:84639987 original size:13 final size:13
Alignment explanation
Indices: 84639969--84639995 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
84639959 GCTCGGTAAG
84639969 GACACACCCATGT
1 GACACACCCATGT
84639982 GACACACCCATGT
1 GACACACCCATGT
84639995 G
1 G
84639996 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.37, G:0.19, T:0.15
Consensus pattern (13 bp):
GACACACCCATGT
Found at i:84645377 original size:79 final size:81
Alignment explanation
Indices: 84645253--84645436 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
84645243 GCTACTCGTT
* *
84645253 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTC-GGATCTTAACCCG
* *
84645316 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
84645332 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAC-AATGCCTTCGGATCTTAACCCG
* *
84645395 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
84645412 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84645437 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 24 0.26
79 48 0.53
80 19 0.21
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:84645436 original size:40 final size:40
Alignment explanation
Indices: 84645234--84645436 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
84645224 CGGAATTTAA
** *
84645234 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84645274 CCGGTTATAGTAACTCGCAC-AATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
84645313 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84645352 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
84645392 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
84645432 CCGGA
1 CCGGA
84645437 CATCATTCAA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 68 0.49
40 57 0.41
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:84653287 original size:80 final size:81
Alignment explanation
Indices: 84653186--84653371 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 81
84653176 GCTCCTCGTT
* *
84653186 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGAGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCG-GATCTTAACC
* *
84653248 CGGATTTAGTAAC-TCGCA
63 CGGATATAGTAACTTAGCA
* **
84653266 CAAATGCCTTTGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
84653331 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
84653347 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84653372 CATCATTCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
79 4 0.04
80 79 0.86
81 9 0.10
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:84653371 original size:40 final size:40
Alignment explanation
Indices: 84653186--84653371 Score: 202
Period size: 40 Copynumber: 4.7 Consensus size: 40
84653176 GCTCCTCGTT
* * *
84653186 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
* * *
84653226 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
*
84653266 CAAATGCCTTTGGGACTTAGCCCGGA-ATTAGTA-TCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTACT-TCGCA
* * *
84653306 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ACTTCGCA
84653347 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84653372 CATCATTCAA
Statistics
Matches: 122, Mismatches: 15, Indels: 18
0.79 0.10 0.12
Matches are distributed among these distances:
39 4 0.03
40 103 0.84
41 14 0.11
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
Found at i:84660191 original size:30 final size:30
Alignment explanation
Indices: 84660155--84660214 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
84660145 TTCCCAAGCC
*
84660155 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
84660185 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
84660215 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:84662804 original size:43 final size:42
Alignment explanation
Indices: 84662727--84662844 Score: 130
Period size: 43 Copynumber: 2.8 Consensus size: 42
84662717 TTGATTTATG
* * * *
84662727 TGTAAGACCACATCTTGGACACTGGCATCGTATTTGATTTCA
1 TGTAAAACCACGTCTGGGACACTGGCATCGTATTTGATTACA
*
84662769 TGTAAAACC-CTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAAACCAC-GTCTGGGACACTGGCATCG-TATTTGATTACA
* * * *
84662812 TGTAAGACCACGTCTGTGACATTGGCATTGTAT
1 TGTAAAACCACGTCTGGGACACTGGCATCGTAT
84662845 GAGCTTTTCG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
41 1 0.02
42 27 0.42
43 35 0.55
44 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32
Consensus pattern (42 bp):
TGTAAAACCACGTCTGGGACACTGGCATCGTATTTGATTACA
Found at i:84664185 original size:21 final size:23
Alignment explanation
Indices: 84664154--84664205 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
84664144 TGTAAGGGAC
84664154 TTTGT-AATGATG-TATG-ATTA
1 TTTGTGAATGATGTTATGAATTA
*
84664174 TTTGTGAATGATGTTTGTGAATTA
1 TTTGTGAATGATG-TTATGAATTA
84664198 TTTGTGAA
1 TTTGTGAA
84664206 ATGTTTCGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 5 0.19
21 7 0.26
23 3 0.11
24 12 0.44
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (23 bp):
TTTGTGAATGATGTTATGAATTA
Found at i:84666834 original size:30 final size:30
Alignment explanation
Indices: 84666798--84666854 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
84666788 AACCCTATGT
*
84666798 TCGATGGTCAAAACCATCCTTTTTCATTAA
1 TCGATGGTCAAAACCATCCCTTTTCATTAA
**
84666828 TCGATGGTCATCACCATCCCTTTTCAT
1 TCGATGGTCAAAACCATCCCTTTTCAT
84666855 AGTTGGTGGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.37
Consensus pattern (30 bp):
TCGATGGTCAAAACCATCCCTTTTCATTAA
Found at i:84666895 original size:29 final size:29
Alignment explanation
Indices: 84666810--84666895 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
84666800 GATGGTCAAA
* * *
84666810 ACCATCCTTTTTCATTAATCGATGGTCATC
1 ACCATCCCTTTTCA-TAATCGATGGCCGTC
* * *
84666840 ACCATCCCTTTTCATAGTTGGTGGCCGTC
1 ACCATCCCTTTTCATAATCGATGGCCGTC
*
84666869 ACCATCCCTTTTCATAATCGATAGCCG
1 ACCATCCCTTTTCATAATCGATGGCCG
84666896 AAGCTATCCT
Statistics
Matches: 46, Mismatches: 10, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
29 33 0.72
30 13 0.28
ACGTcount: A:0.21, C:0.30, G:0.14, T:0.35
Consensus pattern (29 bp):
ACCATCCCTTTTCATAATCGATGGCCGTC
Found at i:84678713 original size:95 final size:90
Alignment explanation
Indices: 84678514--84678743 Score: 243
Period size: 95 Copynumber: 2.5 Consensus size: 90
84678504 CACATAGTAA
*
84678514 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAGATCGAAGCTAATAGCCCAGC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAGATCGAAGCCAATAGCCCAGC
* *
84678579 TATGGTCTTACACGATGTATCATATC
66 TATGGTCTTACACGA-GGATCATACC
* * *
84678605 GATGCCAATGCCATATCCTAGATATGGTCTTACAAGGGATCA-ATATC-AATGCCAATGCCATGT
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAGATCGAA-GCCAAT---A-G-
*
84678668 CCCAGAC-ATGGTCTTACATG-GGATCAAATACC
60 CCCAG-CTATGGTCTTACACGAGGATC--ATACC
* * **
84678700 GATGCAAATGCCATGTCCCAGACGTGGTCTTACATGGGATCACA
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACA
84678744 CATAACCCTA
Statistics
Matches: 116, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
89 2 0.02
90 9 0.08
91 40 0.34
93 5 0.04
94 1 0.01
95 57 0.49
96 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.25
Consensus pattern (90 bp):
GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAGATCGAAGCCAATAGCCCAGC
TATGGTCTTACACGAGGATCATACC
Found at i:84678728 original size:48 final size:48
Alignment explanation
Indices: 84678514--84678741 Score: 204
Period size: 48 Copynumber: 4.9 Consensus size: 48
84678504 CACATAGTAA
* * * * *
84678514 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAAATACC
* * * * *
84678562 GAAGCTAAT---A-G-CCCAG-CTATGGTCTTACACGATGTATC--ATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATG--GGATCAAATACC
* * * * *
84678605 GATGCCAATGCCATATCCTAGATATGGTCTTACAAGGGATC-AATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAAATACC
*
84678652 AATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAAATACC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAAATACC
* *
84678700 GATGCAAATGCCATGTCCCAGACGTGGTCTTACATGGGATCA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
84678742 CACATAACCC
Statistics
Matches: 146, Mismatches: 23, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
43 28 0.19
45 5 0.03
46 5 0.03
47 41 0.28
48 67 0.46
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAAATACC
Found at i:84679875 original size:324 final size:324
Alignment explanation
Indices: 84679286--84679917 Score: 1167
Period size: 324 Copynumber: 2.0 Consensus size: 324
84679276 CCTTTTTAGC
84679286 CATTTTCACTAGAAATCACTTAGTAAAAGATGTTTATCACACATCAAACATTCATATACTGTAAC
1 CATTTTCACTAGAAATCACTTAGTAAAAGATGTTTATCACACATCAAACATTCATATACTGTAAC
*
84679351 GCCCCAAATTTGGGGCCTGGAAGTATTAGGTCTTGAGCACGGGAACAATTAGGAGGTTGCACATA
66 GCCCCAAATTTGGGGCCTGGAAGTATTAGGTCTTGAGCACGGGAACAATTAGGAGATTGCACATA
84679416 AATGTTTAGTTGTGCAAGAAAGTGACACAATTGTCTGTCTGCCTCAGTGTTTATGTGTTTTGGGA
131 AATGTTTAGTTGTGCAAGAAAGTGACACAATTGTCTGTCTGCCTCAGTGTTTATGTGTTTTGGGA
84679481 AGTGTTTGAGAAGTCTTGGGTTCAAGCCTGGGGATGTGCAAAAAGTTTTGTTTTTAAAGGTTAAA
196 AGTGTTTGAGAAGTCTTGGGTTCAAGCCTGGGGATGTGCAAAAAGTTTTGTTTTTAAAGGTTAAA
84679546 GCTCTATCGATAGTTAATAGGCTTATAAATAAACGTGGGTAAAAGATGTTTATCGCACATCAAA
261 GCTCTATCGATAGTTAATAGGCTTATAAATAAACGTGGGTAAAAGATGTTTATCGCACATCAAA
* * *
84679610 CATTTTCACTAGAAATCACTTAGTTAAAGATGTTTATCACACATCAAACATTCATATTCTGTAAT
1 CATTTTCACTAGAAATCACTTAGTAAAAGATGTTTATCACACATCAAACATTCATATACTGTAAC
*
84679675 GCCCCAAATTTGGGGCCTGGAAGTATTAGGTCTTGAGCATGGGAACAATTAGGAGATTGCACATA
66 GCCCCAAATTTGGGGCCTGGAAGTATTAGGTCTTGAGCACGGGAACAATTAGGAGATTGCACATA
*
84679740 AATGTTTAGTTGTGCAAGAAAGTGACACAATTGTTTGTCTGCCTCAGTGTTTATGTGTTTTGGGA
131 AATGTTTAGTTGTGCAAGAAAGTGACACAATTGTCTGTCTGCCTCAGTGTTTATGTGTTTTGGGA
84679805 AGTGTTTGAGAAGTCTTGGGTTCAAGCCTGGGGATGTG-AGAAAAGTTTTGTTTTTAAAGGTTAA
196 AGTGTTTGAGAAGTCTTGGGTTCAAGCCTGGGGATGTGCA-AAAAGTTTTGTTTTTAAAGGTTAA
* * *
84679869 AGCTCTATCGATAGTTAGTAGGCTTATAAATAAATGTGGTTAAAAGATG
260 AGCTCTATCGATAGTTAATAGGCTTATAAATAAACGTGGGTAAAAGATG
84679918 ACAGAAAGGG
Statistics
Matches: 298, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
323 1 0.00
324 297 1.00
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (324 bp):
CATTTTCACTAGAAATCACTTAGTAAAAGATGTTTATCACACATCAAACATTCATATACTGTAAC
GCCCCAAATTTGGGGCCTGGAAGTATTAGGTCTTGAGCACGGGAACAATTAGGAGATTGCACATA
AATGTTTAGTTGTGCAAGAAAGTGACACAATTGTCTGTCTGCCTCAGTGTTTATGTGTTTTGGGA
AGTGTTTGAGAAGTCTTGGGTTCAAGCCTGGGGATGTGCAAAAAGTTTTGTTTTTAAAGGTTAAA
GCTCTATCGATAGTTAATAGGCTTATAAATAAACGTGGGTAAAAGATGTTTATCGCACATCAAA
Found at i:84685528 original size:40 final size:40
Alignment explanation
Indices: 84685477--84685753 Score: 464
Period size: 40 Copynumber: 6.9 Consensus size: 40
84685467 ATAACCGCAA
* * * * *
84685477 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
84685517 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
84685557 GCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
84685597 GCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
84685637 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
84685677 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
84685717 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
84685754 ATGCTCATGC
Statistics
Matches: 222, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 222 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:84693000 original size:55 final size:54
Alignment explanation
Indices: 84692871--84693067 Score: 254
Period size: 54 Copynumber: 3.6 Consensus size: 54
84692861 TTGGTAAGAT
* * *
84692871 AAGGATATCATGTAAGACCATGACAAGACATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
84692925 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * * * *
84692980 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGATTTC-ATAAGTC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
*
84693033 AAGGATACCATGTAAAACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
84693068 ATGGTAAGCT
Statistics
Matches: 125, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 43 0.34
55 42 0.34
56 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:84695580 original size:27 final size:27
Alignment explanation
Indices: 84695556--84695642 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 27
84695546 AACAAAGCTG
*
84695556 CTAGTAACAATATATGTGGCAAAGCCA
1 CTAGTAACAATAAATGTGGCAAAGCCA
* *
84695583 CTAGTATCAGTAAATGTGGCAAAGCCA
1 CTAGTAACAATAAATGTGGCAAAGCCA
* * *
84695610 CTAGTAACAGTAATTGTGGCAGAGCCA
1 CTAGTAACAATAAATGTGGCAAAGCCA
*
84695637 CCAGTA
1 CTAGTA
84695643 CAGTACTTCC
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
CTAGTAACAATAAATGTGGCAAAGCCA
Found at i:84701525 original size:30 final size:31
Alignment explanation
Indices: 84701484--84701544 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 31
84701474 TTTCTGAGCC
*
84701484 TAGGGGCAAAATTGTAATTCTGT-AAAGTTT
1 TAGGGGAAAAATTGTAATTCTGTCAAAGTTT
*
84701514 TAGGGGAAAAATTGTAATTTTGTCAAAGTTT
1 TAGGGGAAAAATTGTAATTCTGTCAAAGTTT
84701545 GAGTTAGGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
30 21 0.75
31 7 0.25
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.38
Consensus pattern (31 bp):
TAGGGGAAAAATTGTAATTCTGTCAAAGTTT
Found at i:84703278 original size:27 final size:27
Alignment explanation
Indices: 84703248--84703504 Score: 316
Period size: 27 Copynumber: 9.5 Consensus size: 27
84703238 TCAGTTTACC
84703248 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
84703275 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
84703302 AAATCACCAAAATACCCGTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** **
84703329 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
84703356 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
84703383 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
84703410 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
84703437 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
84703464 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
*
84703491 AAATTACTAAAATA
1 AAATTACCAAAATA
84703505 ACCTCGACCT
Statistics
Matches: 200, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 200 1.00
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:84703313 original size:54 final size:54
Alignment explanation
Indices: 84703248--84703504 Score: 361
Period size: 54 Copynumber: 4.8 Consensus size: 54
84703238 TCAGTTTACC
84703248 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * * * *
84703302 AAATCACCAAAATACCCGTAGTTTGTAAAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
84703356 AAATTACCAAAATACCCTTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * ** * *
84703410 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* *
84703464 AAATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATA
84703505 ACCTCGACCT
Statistics
Matches: 180, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 180 1.00
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
Found at i:84703522 original size:54 final size:54
Alignment explanation
Indices: 84703248--84703555 Score: 302
Period size: 54 Copynumber: 5.7 Consensus size: 54
84703238 TCAGTTTACC
* * *
84703248 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATAACCTTGATTTATA
* * * * *
84703302 AAATCACCAAAATACCCGT-AGTTTGTAAAATTACCAAAAT-ACCATTGGTTTACA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACTAAAATAACC-TTGATTTATA
* *
84703356 AAATTACCAAAATA-CCCTTAGTTTGTAAAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACTAAAATAACC-TTGATTTATA
* * * * * * *
84703410 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATAACCTTGATTTATA
* * ** *
84703464 AAATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATAACCTCGACCTGTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATAACCTTGATTTATA
*** *
84703518 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTACTAAA
84703556 GTACCATTAA
Statistics
Matches: 213, Mismatches: 34, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
53 10 0.05
54 194 0.91
55 9 0.04
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATAACCTTGATTTATA
Found at i:84703560 original size:27 final size:27
Alignment explanation
Indices: 84703248--84703560 Score: 258
Period size: 27 Copynumber: 11.6 Consensus size: 27
84703238 TCAGTTTACC
* *
84703248 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACTAAAATACCCCTGATTTGTA
* * *
84703275 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACTAAAATACCCCTGATTTGTA
* * *
84703302 AAATCACCAAAATACCCGT-AGTTTGTA
1 AAATTACTAAAATACCCCTGA-TTTGTA
* ** * **
84703329 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACTAAAATACCCCTGATTTGTA
* *
84703356 AAATTACCAAAATA-CCCTTAGTTTGTA
1 AAATTACTAAAATACCCCTGA-TTTGTA
* *
84703383 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACTAAAATACCC-CTGATTTGTA
* *
84703410 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACTAAAATACCCCTGATTTGTA
* * *
84703437 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACTAAAATACCCCTGATTTGTA
* *
84703464 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACTAAAATACCCCTGATTTGTA
* **
84703491 AAATTACTAAAATA-ACCTCGACCTGTA
1 AAATTACTAAAATACCCCT-GATTTGTA
* * *
84703518 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACTAAAATACCCCT-GATTTGTA
*
84703545 AAATTACTAAAGTACC
1 AAATTACTAAAATACC
84703561 ATTAATTTAC
Statistics
Matches: 235, Mismatches: 43, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
26 7 0.03
27 224 0.95
28 3 0.01
29 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTAAAATACCCCTGATTTGTA
Found at i:84703633 original size:27 final size:27
Alignment explanation
Indices: 84703603--84703790 Score: 272
Period size: 27 Copynumber: 7.0 Consensus size: 27
84703593 TTTACAAAAT
84703603 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
84703630 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
*
84703657 TACCGAAATACCCTTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * * * *
84703684 TACTGAAATACCCCTATAGGATAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
84703711 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * *
84703738 TACCGAAATACCCCTGTAGGATAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
*
84703765 TACCGAGATA-CCTTGTAGGGTA-AAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
84703790 T
1 T
84703791 TACCATTTTA
Statistics
Matches: 144, Mismatches: 17, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
25 3 0.02
26 10 0.07
27 131 0.91
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
TACCGAAATACCCTTGTAGGGTAGAAA
Found at i:84704264 original size:22 final size:22
Alignment explanation
Indices: 84704239--84704285 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
84704229 GGCTTTATGT
84704239 CAACCT-ACATATGGCTCTGTGC
1 CAACCTGA-ATATGGCTCTGTGC
* *
84704261 CAACCTGATTATGGCTGTGTGC
1 CAACCTGAATATGGCTCTGTGC
84704283 CAA
1 CAA
84704286 ACGTATTTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (22 bp):
CAACCTGAATATGGCTCTGTGC
Found at i:84704474 original size:27 final size:27
Alignment explanation
Indices: 84704444--84704545 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
84704434 ATTCTGTTAA
* *
84704444 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* * *
84704471 GTGGCTATGCAACAAATATCTG-TTCTA
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
84704498 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
84704525 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
84704546 ATAACTGAGC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 8 0.13
27 48 0.76
28 7 0.11
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:84704721 original size:6 final size:6
Alignment explanation
Indices: 84704712--84704838 Score: 91
Period size: 6 Copynumber: 20.7 Consensus size: 6
84704702 TACCTGATAA
* * *
84704712 TGATTC TGATTT TGATTC TG-TTACC TGATAC CGATTC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC
* * * * *
84704761 TG-TCACC TAATAC TGATTC TGATTC TGATTC T-ATCACC TAATTC TGATTC
1 TGAT--TC TGATTC TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC
84704811 TGATTC TGATTC TGATTC T-AGTTC TGAT
1 TGATTC TGATTC TGATTC TGA-TTC TGAT
84704839 AATGTTTCTT
Statistics
Matches: 96, Mismatches: 14, Indels: 22
0.73 0.11 0.17
Matches are distributed among these distances:
5 6 0.06
6 78 0.81
7 8 0.08
8 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (6 bp):
TGATTC
Found at i:84704737 original size:31 final size:31
Alignment explanation
Indices: 84704703--84704824 Score: 172
Period size: 31 Copynumber: 3.9 Consensus size: 31
84704693 TAATTTTGTT
* * * *
84704703 ACCTGATAATGATTCTGATTTTGATTCTGTT
1 ACCTAATACTGATTCTGATTCTGATTCTGTC
* *
84704734 ACCTGATACCGATTCTGATTCTGATTCTGTC
1 ACCTAATACTGATTCTGATTCTGATTCTGTC
*
84704765 ACCTAATACTGATTCTGATTCTGATTCTATC
1 ACCTAATACTGATTCTGATTCTGATTCTGTC
*
84704796 ACCTAATTCTGATTCTGATTCTGATTCTG
1 ACCTAATACTGATTCTGATTCTGATTCTG
84704825 ATTCTAGTTC
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 82 1.00
ACGTcount: A:0.22, C:0.20, G:0.14, T:0.43
Consensus pattern (31 bp):
ACCTAATACTGATTCTGATTCTGATTCTGTC
Found at i:84705565 original size:55 final size:54
Alignment explanation
Indices: 84705481--84705631 Score: 191
Period size: 55 Copynumber: 2.8 Consensus size: 54
84705471 GGGGTGTTAC
**
84705481 ACTATAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGCT
1 ACTATAAGGCAAGGATCTCATGTAAGACCATGTCAAGACATGGCATTGATGAG-T
* * *
84705536 ACTATAAGGCAAAGG-TCTCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGT
1 ACTATAAGGC-AAGGATCTCATGTAAGACCATGTCAAGACATGGCATTGATGAGT
* *
84705590 TC-ATAAGGCAAGGATAC-CACGTAAGACCATGTCAAGACATGG
1 ACTATAAGGCAAGGAT-CTCATGTAAGACCATGTCAAGACATGG
84705632 TAATGGTAAG
Statistics
Matches: 84, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
52 4 0.05
53 30 0.36
54 3 0.04
55 43 0.51
56 4 0.05
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.21
Consensus pattern (54 bp):
ACTATAAGGCAAGGATCTCATGTAAGACCATGTCAAGACATGGCATTGATGAGT
Done.