Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 249 of 373
Found at i:84705619 original size:53 final size:53
Alignment explanation
Indices: 84705484--84705645 Score: 184
Period size: 53 Copynumber: 3.0 Consensus size: 53
84705474 GTGTTACACT
* * * *
84705484 ATAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGCTAC
1 ATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAG-TTC
* *
84705538 TATAAGGCAAAGG-T-CTCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC
1 -ATAAGGC-AAGGATAC-CATGTAAGACCATGTCAAGACATGGCATTGGTGAGTTC
* * * *
84705592 ATAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGTAATGGTAAGTTC
1 ATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTTC
84705645 A
1 A
84705646 AAATGGAAAA
Statistics
Matches: 91, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
52 4 0.04
53 41 0.45
54 3 0.03
55 39 0.43
56 4 0.04
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
ATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTTC
Found at i:84710365 original size:27 final size:27
Alignment explanation
Indices: 84710335--84710513 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
84710325 ATAGAATAAA
84710335 TGTTTTGCCCTTATGTGGTAAAATGAC
1 TGTTTTGCCCTTATGTGGTAAAATGAC
** *
84710362 TGTTTTGCCCTTATACGATAAAATGAC
1 TGTTTTGCCCTTATGTGGTAAAATGAC
* **
84710389 TATTTTGCCCTTATACGGTAAAATGAC
1 TGTTTTGCCCTTATGTGGTAAAATGAC
* * * *
84710416 TATTTTTCCCTTATGAGGTAAAATGAT
1 TGTTTTGCCCTTATGTGGTAAAATGAC
* *
84710443 TGTTTGGCCCTTATGTGGTAAAATGAT
1 TGTTTTGCCCTTATGTGGTAAAATGAC
* * * * *
84710470 TGTTTTACCTTTTTATGGTAAGATGAC
1 TGTTTTGCCCTTATGTGGTAAAATGAC
* *
84710497 TGTTTTACCCCTATGTG
1 TGTTTTGCCCTTATGTG
84710514 ATGTATGTTT
Statistics
Matches: 128, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (27 bp):
TGTTTTGCCCTTATGTGGTAAAATGAC
Found at i:84710381 original size:54 final size:54
Alignment explanation
Indices: 84710315--84710475 Score: 182
Period size: 54 Copynumber: 3.0 Consensus size: 54
84710305 CATACCTGGA
* *
84710315 CCCTTA-ATCGATAGAATAAATGTTTTGCCCTTATGTGGTAAAATGACTGTTTTG
1 CCCTTATA-CGATAAAATGAATGTTTTGCCCTTATGTGGTAAAATGACTGTTTTG
* * ** * *
84710369 CCCTTATACGATAAAATGACTATTTTGCCCTTATACGGTAAAATGACTATTTTT
1 CCCTTATACGATAAAATGAATGTTTTGCCCTTATGTGGTAAAATGACTGTTTTG
* * * *
84710423 CCCTTATGA-GGTAAAATGATTGTTTGGCCCTTATGTGGTAAAATGATTGTTTT
1 CCCTTAT-ACGATAAAATGAATGTTTTGCCCTTATGTGGTAAAATGACTGTTTT
84710476 ACCTTTTTAT
Statistics
Matches: 89, Mismatches: 16, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
54 87 0.98
55 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (54 bp):
CCCTTATACGATAAAATGAATGTTTTGCCCTTATGTGGTAAAATGACTGTTTTG
Found at i:84710811 original size:18 final size:18
Alignment explanation
Indices: 84710788--84710849 Score: 72
Period size: 18 Copynumber: 3.5 Consensus size: 18
84710778 TGGACTTGTA
* *
84710788 TACTGTTACTGCACGGTT
1 TACTGTTACTACACTGTT
*
84710806 TACTGTTATTACACTG-T
1 TACTGTTACTACACTGTT
* *
84710823 TACTATTACTACATTGTT
1 TACTGTTACTACACTGTT
84710841 TACTGTTAC
1 TACTGTTAC
84710850 CACAATAGGC
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
17 14 0.39
18 22 0.61
ACGTcount: A:0.23, C:0.19, G:0.13, T:0.45
Consensus pattern (18 bp):
TACTGTTACTACACTGTT
Found at i:84713087 original size:79 final size:81
Alignment explanation
Indices: 84712985--84713168 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
84712975 GCTCCTCGTT
* *
84712985 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
84713047 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
84713065 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
84713129 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
84713145 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84713169 CAGCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 14 0.15
79 56 0.61
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:84713102 original size:39 final size:41
Alignment explanation
Indices: 84712985--84713168 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
84712975 GCTCCTCGTT
* *
84712985 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
84713025 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
84713065 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
84713104 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
84713145 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84713169 CAGCATTCAA
Statistics
Matches: 128, Mismatches: 7, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 48 0.38
40 66 0.52
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:84716944 original size:36 final size:38
Alignment explanation
Indices: 84716870--84716952 Score: 134
Period size: 40 Copynumber: 2.2 Consensus size: 38
84716860 TTGGGCCATG
84716870 GTGGGCCGAAATAGGTCCTGTGGGCCCGCCCCACGTGTAT
1 GTGGGCCGAAATAGGTCCTGTGGG--CGCCCCACGTGTAT
84716910 GTGGGCCGAAATAGGTCCTGT-GG-GCCCCACGTGTAT
1 GTGGGCCGAAATAGGTCCTGTGGGCGCCCCACGTGTAT
84716946 GTGGGCC
1 GTGGGCC
84716953 CTACACGGGT
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 20 0.47
39 2 0.05
40 21 0.49
ACGTcount: A:0.14, C:0.28, G:0.37, T:0.20
Consensus pattern (38 bp):
GTGGGCCGAAATAGGTCCTGTGGGCGCCCCACGTGTAT
Found at i:84717191 original size:27 final size:27
Alignment explanation
Indices: 84717161--84717307 Score: 186
Period size: 27 Copynumber: 5.4 Consensus size: 27
84717151 TAATTGATAG
84717161 AATGACTATTTTGCCCTTATGTGGTAA
1 AATGACTATTTTGCCCTTATGTGGTAA
* * *
84717188 AATGACTGTTTTGCCCTTATGAGGTGA
1 AATGACTATTTTGCCCTTATGTGGTAA
* * * *
84717215 AATGAATTTTTTGCTCTTATGAGGTAA
1 AATGACTATTTTGCCCTTATGTGGTAA
84717242 AATGACTATTTTGCCCTTATGTGGTAA
1 AATGACTATTTTGCCCTTATGTGGTAA
* * *
84717269 AATGACTATTTTTCCCTTTTATGGTAA
1 AATGACTATTTTGCCCTTATGTGGTAA
* *
84717296 GATGACTGTTTT
1 AATGACTATTTT
84717308 ACCCCTATAT
Statistics
Matches: 104, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (27 bp):
AATGACTATTTTGCCCTTATGTGGTAA
Found at i:84721450 original size:40 final size:40
Alignment explanation
Indices: 84721384--84721619 Score: 330
Period size: 40 Copynumber: 5.8 Consensus size: 40
84721374 AAATAGGGCT
* *
84721384 TTAGCGGCG-TTTTAGTAAAAAACGCCGCTAAAAACTGATCA
1 TTAGCGGCGCTTTTGGT--AAAACGCCGCTAAAAACTGAGCA
*
84721425 TTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACTGAGCA
1 TTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACTGAGCA
* *
84721465 TTAGCAGCGCTTTTGGTAAAACGCCGCTAAAGACTGAGCA
1 TTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACTGAGCA
* * *
84721505 TTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCAGGGCA
1 TTAGCGGCGCTTTTGGTAAAACGCCGCTAAA-AACTGAGCA
*
84721546 TTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAACTAGGGCA
1 TTAGCGGCGCTTTTGGTAAAACGCCGCT-AAAAACT-GAGCA
*
84721588 TTAGCGGCGCTTTTAGTAAAACGCCGCTAAAA
1 TTAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
84721620 GTTATATAAC
Statistics
Matches: 179, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
40 90 0.50
41 48 0.27
42 41 0.23
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (40 bp):
TTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACTGAGCA
Found at i:84721798 original size:14 final size:14
Alignment explanation
Indices: 84721776--84721820 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
84721766 TTAATTATCA
*
84721776 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
84721790 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
84721804 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
84721818 TTA
1 TTA
84721821 AACAGGTTTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:84722408 original size:14 final size:14
Alignment explanation
Indices: 84722389--84722433 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
84722379 TTCATTATCA
84722389 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
84722403 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
*
84722417 GTAT-GATTTAGGGT
1 TTATAG-TTTAGGGT
84722431 TTA
1 TTA
84722434 ATTTTTAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 1 0.04
14 27 0.96
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:84724881 original size:21 final size:21
Alignment explanation
Indices: 84724836--84724881 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
84724826 CATTTCATTG
*
84724836 TGTTTGGAAGAAACAAAGAAG
1 TGTTTGGAAGAAACAAAGAAA
* * *
84724857 TGTTTGGAATAAATAAATAAA
1 TGTTTGGAAGAAACAAAGAAA
84724878 TGTT
1 TGTT
84724882 GTCAGCATGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.46, C:0.02, G:0.22, T:0.30
Consensus pattern (21 bp):
TGTTTGGAAGAAACAAAGAAA
Found at i:84734329 original size:48 final size:48
Alignment explanation
Indices: 84734266--84734445 Score: 245
Period size: 48 Copynumber: 3.8 Consensus size: 48
84734256 CTCTCACACT
* *
84734266 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACACTCACCCG
1 AAGTGCTAATATCATGGCCCAAAGCCAAATCAATGTAACACTCACCCG
* * * *
84734314 AAGTGCTAATATCATGGACCGAAGCCAAATCAATGTAACA-TGCACTCA
1 AAGTGCTAATATCATGGCCCAAAGCCAAATCAATGTAACACT-CACCCG
* * * *
84734362 AAGTGCTAATATCATGGCCTAAAGCCAAAGCAATGTAACTCACACCCG
1 AAGTGCTAATATCATGGCCCAAAGCCAAATCAATGTAACACTCACCCG
*
84734410 AAGTGCTAATATCATCGCCCAAAGCCAAATCAATGT
1 AAGTGCTAATATCATGGCCCAAAGCCAAATCAATGT
84734446 TCCTTAATGA
Statistics
Matches: 115, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
47 1 0.01
48 114 0.99
ACGTcount: A:0.38, C:0.27, G:0.16, T:0.19
Consensus pattern (48 bp):
AAGTGCTAATATCATGGCCCAAAGCCAAATCAATGTAACACTCACCCG
Found at i:84734435 original size:96 final size:96
Alignment explanation
Indices: 84734266--84734445 Score: 279
Period size: 96 Copynumber: 1.9 Consensus size: 96
84734256 CTCTCACACT
* * * *
84734266 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACACTCACCCGAAGTGCTAATATCATGG
1 AAGTGCCAATATCATGGCCCAAAGCCAAAGCAATGTAACACACACCCGAAGTGCTAATATCATCG
*
84734331 ACCGAAGCCAAATCAATGTAACATGCACTCA
66 ACCAAAGCCAAATCAATGTAACATGCACTCA
* * *
84734362 AAGTGCTAATATCATGGCCTAAAGCCAAAGCAATGTAACTCACACCCGAAGTGCTAATATCATCG
1 AAGTGCCAATATCATGGCCCAAAGCCAAAGCAATGTAACACACACCCGAAGTGCTAATATCATCG
*
84734427 CCCAAAGCCAAATCAATGT
66 ACCAAAGCCAAATCAATGT
84734446 TCCTTAATGA
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 75 1.00
ACGTcount: A:0.38, C:0.27, G:0.16, T:0.19
Consensus pattern (96 bp):
AAGTGCCAATATCATGGCCCAAAGCCAAAGCAATGTAACACACACCCGAAGTGCTAATATCATCG
ACCAAAGCCAAATCAATGTAACATGCACTCA
Found at i:84735038 original size:21 final size:20
Alignment explanation
Indices: 84735014--84735052 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
84735004 TTGTATAACT
*
84735014 ATCATCAAACATTCAAAATCA
1 ATCATAAAACA-TCAAAATCA
84735035 ATCATAAAACATCAAAAT
1 ATCATAAAACATCAAAAT
84735053 ACTCATGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.56, C:0.21, G:0.00, T:0.23
Consensus pattern (20 bp):
ATCATAAAACATCAAAATCA
Found at i:84739918 original size:25 final size:25
Alignment explanation
Indices: 84739885--84739935 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
84739875 ATGAAAGATA
84739885 AAAAGTACATTAAGAGGTACTTTCT
1 AAAAGTACATTAAGAGGTACTTTCT
84739910 AAAAGTACATTAAGAGGTACTTTCT
1 AAAAGTACATTAAGAGGTACTTTCT
84739935 A
1 A
84739936 TAGTCAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (25 bp):
AAAAGTACATTAAGAGGTACTTTCT
Found at i:84742851 original size:21 final size:21
Alignment explanation
Indices: 84742827--84742875 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
84742817 ACGAACTCGG
84742827 ACTCAACTCAACGAGTTCGAA
1 ACTCAACTCAACGAGTTCGAA
*
84742848 ACTCAACTCAACGAGTTTGAA
1 ACTCAACTCAACGAGTTCGAA
84742869 ACTCAAC
1 ACTCAAC
84742876 CATCCTAGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.39, C:0.29, G:0.12, T:0.20
Consensus pattern (21 bp):
ACTCAACTCAACGAGTTCGAA
Found at i:84746050 original size:36 final size:36
Alignment explanation
Indices: 84746009--84746080 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
84745999 CACATCCTAA
84746009 GCCATTTCGAGAAGCATCACTATACACCACAAATTC
1 GCCATTTCGAGAAGCATCACTATACACCACAAATTC
84746045 GCCATTTCGAGAAGCATCACTATACACCACAAATTC
1 GCCATTTCGAGAAGCATCACTATACACCACAAATTC
84746081 TTTACCTGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.31, G:0.11, T:0.22
Consensus pattern (36 bp):
GCCATTTCGAGAAGCATCACTATACACCACAAATTC
Found at i:84755595 original size:40 final size:40
Alignment explanation
Indices: 84755501--84755645 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
84755491 TACTCGAATG
*
84755501 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
84755542 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
84755582 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
84755622 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
84755646 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:84763656 original size:40 final size:40
Alignment explanation
Indices: 84763578--84763706 Score: 161
Period size: 40 Copynumber: 3.2 Consensus size: 40
84763568 CTAATCTGTC
* * *
84763578 CCGAAGGCTTTTGTGCTAAGCGACTACATCCGGACTAAGAT
1 CCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAGAT
84763619 CCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAG-T
1 CCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGAT
* * * * *
84763658 CCCGAAGGCATTTATGCTAGTGACCATATCCGGGTTAAGAC
1 -CCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGAT
84763699 CCGAAGGC
1 CCGAAGGC
84763707 CTTGTGCGAG
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.78
41 16 0.21
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGAT
Found at i:84771669 original size:41 final size:40
Alignment explanation
Indices: 84771594--84771778 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
84771584 TACTCGAATG
* *
84771594 ATATCTGGGCTAAGTCCC-AAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
*
84771634 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
84771675 ACATCCAGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
84771715 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
84771755 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
84771779 CTTGTGCGAG
Statistics
Matches: 129, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 78 0.60
41 49 0.38
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:84773627 original size:28 final size:28
Alignment explanation
Indices: 84773587--84773678 Score: 159
Period size: 28 Copynumber: 3.3 Consensus size: 28
84773577 TGTACTAGAG
84773587 TACCCCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATTA
84773615 TACCCCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATTA
*
84773643 TACCCCTATGTATGCAAAATGACC-TATA
1 TACCCCTATGTATGCAAAATTACCAT-TA
84773671 TACCCCTA
1 TACCCCTA
84773679 GGGTTAACTT
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
27 1 0.02
28 61 0.98
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATTACCATTA
Found at i:84773825 original size:28 final size:27
Alignment explanation
Indices: 84773784--84773865 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
84773774 AGGAAACGTC
84773784 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* * **
84773812 TTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
84773839 CTGGTGGCACTGCCACAAAATATCTGT
1 CTGGTGGCACTGCCAC-AAATATCTGT
84773866 ATCTAGTGAC
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
27 22 0.50
28 22 0.50
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:84775899 original size:22 final size:22
Alignment explanation
Indices: 84775849--84775904 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
84775839 TTTATAATAC
84775849 ATTAAATA-AAACTATATTATTA
1 ATTAAATATAAA-TATATTATTA
* *
84775871 CTAAAATATAAATATATTATTA
1 ATTAAATATAAATATATTATTA
84775893 ATTAAAT-TAAAT
1 ATTAAATATAAAT
84775905 TAAAATAGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 5 0.17
22 21 0.72
23 3 0.10
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (22 bp):
ATTAAATATAAATATATTATTA
Found at i:84777793 original size:15 final size:15
Alignment explanation
Indices: 84777775--84777857 Score: 55
Period size: 15 Copynumber: 5.4 Consensus size: 15
84777765 GCTTAGAAAT
84777775 TTATTTGTATGTTAA
1 TTATTTGTATGTTAA
*
84777790 TTATTTGCATGTT-A
1 TTATTTGTATGTTAA
*
84777804 TT-TTAT-TACTTTATATA
1 TTATT-TGTA-TGT-TA-A
*
84777821 TTAATTGTATGTTAA
1 TTATTTGTATGTTAA
* *
84777836 ATATTTGTATATTAA
1 TTATTTGTATGTTAA
84777851 TATATTT
1 T-TATTT
84777858 AATTTAACGA
Statistics
Matches: 51, Mismatches: 9, Indels: 15
0.68 0.12 0.20
Matches are distributed among these distances:
13 3 0.06
14 6 0.12
15 26 0.51
16 7 0.14
17 6 0.12
18 3 0.06
ACGTcount: A:0.30, C:0.02, G:0.08, T:0.59
Consensus pattern (15 bp):
TTATTTGTATGTTAA
Found at i:84781242 original size:29 final size:29
Alignment explanation
Indices: 84781200--84781257 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
84781190 ACAAAACATA
* *
84781200 TTCAACTACCTCTATCCTATACATGCCAT
1 TTCAACTACCTCTAGCCTAGACATGCCAT
84781229 TTCAACTACCTCTAGCCTAGACATGCCAT
1 TTCAACTACCTCTAGCCTAGACATGCCAT
84781258 ACTCCAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.28, C:0.34, G:0.07, T:0.31
Consensus pattern (29 bp):
TTCAACTACCTCTAGCCTAGACATGCCAT
Found at i:84781770 original size:43 final size:43
Alignment explanation
Indices: 84781704--84781860 Score: 203
Period size: 43 Copynumber: 3.7 Consensus size: 43
84781694 AGCTCGTACA
*
84781704 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCG
* * *
84781747 ATGCC-ACTGTCCCAGACAAGGTCTTACACGAAATCAAATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAATCAAATATCG
* * *
84781789 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATCACAA-GTCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGT-AATCA-AATATCG
84781833 ATGCCAACGTCCCAGACATGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
84781861 CGATAACACA
Statistics
Matches: 98, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
42 29 0.30
43 39 0.40
44 30 0.31
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCG
Found at i:84789366 original size:42 final size:43
Alignment explanation
Indices: 84789276--84789379 Score: 129
Period size: 42 Copynumber: 2.4 Consensus size: 43
84789266 GTCCCAGACG
* * *
84789276 TGGTCTTACATGTAATCAAATATCGATGCCACTGTCCTAGACA
1 TGGTCTTACACGAAATCAAATATCGATGCCACTGTCCTAAACA
* **
84789319 AGGTCTTACACGAAATCAAATA-CGATGCCGGTGTCCTAAACA
1 TGGTCTTACACGAAATCAAATATCGATGCCACTGTCCTAAACA
*
84789361 TGGTCTTAAACGTAAATCA
1 TGGTCTTACACG-AAATCA
84789380 CAAGTTGATG
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 27 0.52
43 25 0.48
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (43 bp):
TGGTCTTACACGAAATCAAATATCGATGCCACTGTCCTAAACA
Found at i:84791450 original size:44 final size:47
Alignment explanation
Indices: 84791401--84791522 Score: 135
Period size: 44 Copynumber: 2.7 Consensus size: 47
84791391 ATATATACGT
* *
84791401 GCTGATGCATGTCCCGGACATGTCTTACACTAGCATAAC-TC-T-TA-
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGC-TAACATCGTCGAG
* * * *
84791445 GCTGATGCATGTCCCATACACGTCTGACACTAGCTATCATCGTCGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTAACATCGTCGAG
* *
84791492 GCCGATGCATGTCCTAGACATGTCTTACACT
1 GCTGATGCATGTCCCAGACATGTCTTACACT
84791523 GGCACTCATC
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
43 3 0.05
44 32 0.51
45 1 0.02
46 1 0.02
47 26 0.41
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (47 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTAACATCGTCGAG
Found at i:84791522 original size:47 final size:46
Alignment explanation
Indices: 84791302--84791621 Score: 177
Period size: 47 Copynumber: 6.8 Consensus size: 46
84791292 GGGATAAGTT
* *
84791302 GCCGATGCCATGTCCCAGACATGGTCTTCCACTGGCTA-TCCA-CATCGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-ACT-CATC-TCGAG
* * * * * * * **
84791351 GTCGATGCGATATCCCAAACATGGTTTTATACTAGCTCTCATATATACG
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCGA-G
* * * *
84791400 TGCTGATGCATGTCCCGGACATGTCTTACACTAGCA-T-AACTCTTA-
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTC-GAG
* * * *
84791445 GCTGATGCATGTCCCATACACGTCTGACACTAGCTA-TCATCGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-ACTCATC-TCGAG
* * * *
84791492 GCCGATGCATGTCCTAGACATGTCTTACACTGGCACTCATCTCTAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAG
* * * * *
84791538 GCCGATTCCATGTCCTAGACATGATCTTACACTGGCACTCATAAT-GTG
1 GCCGA-TGCATGTCCCAGACATG-TCTTACACTAGCACTCAT-CTCGAG
* * *
84791586 GCCAATGCATGTTCCAGACATGTCTTACACTGGCAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCAC
84791622 ATAAGAAATC
Statistics
Matches: 212, Mismatches: 45, Indels: 31
0.74 0.16 0.11
Matches are distributed among these distances:
44 30 0.14
45 2 0.01
46 28 0.13
47 68 0.32
48 38 0.18
49 40 0.19
50 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAG
Found at i:84798018 original size:47 final size:46
Alignment explanation
Indices: 84797965--84798141 Score: 205
Period size: 47 Copynumber: 3.8 Consensus size: 46
84797955 ACAACTTTTA
*
84797965 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTA-TCATCGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATC-TCGAG
* * * *
84798012 GCCGATGCATGTCCTAGACATGTCTTACATTGGCACTCATCTCTAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCGAG
* * * *
84798058 GCCGATGCCATGTCCTAAACATGGTCTTACACTGGCACTCATAAT-GGG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCAT-CTCGAG
*
84798106 GCCGATGTATGTCCCAGACATGTCTTACACTGGCAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCAC
84798142 ACAAGAAATC
Statistics
Matches: 112, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
46 26 0.23
47 60 0.54
48 25 0.22
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCGAG
Found at i:84801814 original size:25 final size:25
Alignment explanation
Indices: 84801777--84801846 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
84801767 GCCCATTTTC
* *
84801777 ACAGCTCGCGTGAGCATACCGATTT
1 ACAGCTCGTGTGAGCATACAGATTT
* *
84801802 ACAGCTCATGTGAGCATATAGATTT
1 ACAGCTCGTGTGAGCATACAGATTT
*
84801827 ACATCTCGTGTGAGCATACA
1 ACAGCTCGTGTGAGCATACA
84801847 TGTACAGGAT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
ACAGCTCGTGTGAGCATACAGATTT
Found at i:84804306 original size:21 final size:20
Alignment explanation
Indices: 84804272--84804340 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 20
84804262 TACATTTAGT
**
84804272 TTAATTAATTTTTAGATTAAA
1 TTAATTAAAATTTA-ATTAAA
84804293 TTAATTAAAATTTAATTAAA
1 TTAATTAAAATTTAATTAAA
* *
84804313 GTAAATAAACAAGTTTAATTAAA
1 -TTAATTAA-AA-TTTAATTAAA
84804336 GTTAA
1 -TTAA
84804341 ACTTAGTATA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 6 0.15
21 18 0.45
22 2 0.05
23 14 0.35
ACGTcount: A:0.51, C:0.01, G:0.06, T:0.42
Consensus pattern (20 bp):
TTAATTAAAATTTAATTAAA
Found at i:84804928 original size:24 final size:25
Alignment explanation
Indices: 84804881--84804928 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
84804871 TTGATTTGAA
*
84804881 TGTTAATTGAGTGAAATATGATATT
1 TGTTAATTGAGTGAAATATCATATT
* *
84804906 TGTTAATT-ATTGAACTATCATAT
1 TGTTAATTGAGTGAAATATCATAT
84804929 GTAGCTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.46
Consensus pattern (25 bp):
TGTTAATTGAGTGAAATATCATATT
Found at i:84806449 original size:30 final size:30
Alignment explanation
Indices: 84806415--84806476 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
84806405 GTTTAAAAGT
84806415 AAACATATTTGAAAGATGAATCCTTGTTGA
1 AAACATATTTGAAAGATGAATCCTTGTTGA
84806445 AAACATATTTGAAAGATGAATCCTTGTTGA
1 AAACATATTTGAAAGATGAATCCTTGTTGA
84806475 AA
1 AA
84806477 TGATTGAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.32
Consensus pattern (30 bp):
AAACATATTTGAAAGATGAATCCTTGTTGA
Found at i:84807835 original size:22 final size:22
Alignment explanation
Indices: 84807810--84807911 Score: 80
Period size: 25 Copynumber: 4.4 Consensus size: 22
84807800 GTCATTAGGG
*
84807810 TTACCGATCAGCTCATGAGAGC
1 TTACCGATCAACTCATGAGAGC
*
84807832 TTACCGATTTTCAGCTCAT-ATGAGC
1 TTACCGA---TCAACTCATGA-GAGC
84807857 TTACCGATTTTCAACTCATGAGAGC
1 TTACCGA---TCAACTCATGAGAGC
* **
84807882 ATACCTTTCAACTCATGAGAGC
1 TTACCGATCAACTCATGAGAGC
*
84807904 ATACCGAT
1 TTACCGAT
84807912 TCATAGCTCG
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
22 28 0.41
24 1 0.01
25 39 0.57
26 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (22 bp):
TTACCGATCAACTCATGAGAGC
Found at i:84807849 original size:25 final size:25
Alignment explanation
Indices: 84807821--84807912 Score: 120
Period size: 25 Copynumber: 3.8 Consensus size: 25
84807811 TACCGATCAG
* *
84807821 CTCATGAGAGCTTACCGATTTTCAG
1 CTCATGAGAGCATACCGATTTTCAA
*
84807846 CTCAT-ATGAGCTTACCGATTTTCAA
1 CTCATGA-GAGCATACCGATTTTCAA
84807871 CTCATGAGAGCATACC---TTTCAA
1 CTCATGAGAGCATACCGATTTTCAA
84807893 CTCATGAGAGCATACCGATT
1 CTCATGAGAGCATACCGATT
84807913 CATAGCTCGT
Statistics
Matches: 60, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
22 22 0.37
24 1 0.02
25 36 0.60
26 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (25 bp):
CTCATGAGAGCATACCGATTTTCAA
Found at i:84810450 original size:30 final size:30
Alignment explanation
Indices: 84810416--84810475 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
84810406 TTTTAATCCT
* *
84810416 ACACCATATTATGCA-CCATCATCAACCTTG
1 ACACCATATTATACACCCCT-ATCAACCTTG
84810446 ACACCATATTATACACCCCTATCAACCTTG
1 ACACCATATTATACACCCCTATCAACCTTG
84810476 TAACATCTCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 24 0.89
31 3 0.11
ACGTcount: A:0.33, C:0.35, G:0.05, T:0.27
Consensus pattern (30 bp):
ACACCATATTATACACCCCTATCAACCTTG
Found at i:84811924 original size:48 final size:48
Alignment explanation
Indices: 84811682--84811948 Score: 167
Period size: 48 Copynumber: 5.6 Consensus size: 48
84811672 AACTCTCGTA
* * * * * * *
84811682 TAAGACCATATCTGGGATATGGCTTTAGCAGTGA-CATGTGATCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCA-TCATTATGTGGTCCCATG
* * * **
84811730 TAAGACAATGTTTGGGACATGGCTTTGGCATCATTATGTAATCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCATCATTATGTGGTCCCATG
* * * * *
84811778 TAAGACCATGT-TCGGGACATGGCATTGGCATCATAATG-AGACATCGTG
1 TAAGACCATGTCT-GGGACATGGCATTGGCATCATTATGTGGTC-CCATG
* * *
84811826 TAAGACCATAG-CTGGG-C-T---ATCGGCGTCGA-TATGTGTGATCCCATA
1 TAAGACCAT-GTCTGGGACATGGCATTGGCATC-ATTATGTG-G-TCCCATG
* *
84811871 AAAGACCATGTCTGGGACATGGCATTGGCATCGTTATGTGGTCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCATCATTATGTGGTCCCATG
* * * *
84811919 CAAGACCATCTCTAGGATATGGCATTGGCA
1 TAAGACCATGTCTGGGACATGGCATTGGCA
84811949 CCCTACCTTG
Statistics
Matches: 171, Mismatches: 32, Indels: 32
0.73 0.14 0.14
Matches are distributed among these distances:
43 10 0.06
44 2 0.01
45 16 0.09
46 3 0.02
47 7 0.04
48 117 0.68
49 3 0.02
50 13 0.08
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATTGGCATCATTATGTGGTCCCATG
Found at i:84815645 original size:45 final size:45
Alignment explanation
Indices: 84815594--84815683 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
84815584 AAATTGGTGT
*
84815594 GGAATGCCTTTAAATAGTGTAACAAATAAATGTGCAATAGGATGA
1 GGAATGCCTCTAAATAGTGTAACAAATAAATGTGCAATAGGATGA
*
84815639 GGAATGCCTCTAAATAGTGTAACAAATAGATGTGCAATAGGATGA
1 GGAATGCCTCTAAATAGTGTAACAAATAAATGTGCAATAGGATGA
84815684 CTTTATAAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (45 bp):
GGAATGCCTCTAAATAGTGTAACAAATAAATGTGCAATAGGATGA
Found at i:84818406 original size:46 final size:44
Alignment explanation
Indices: 84818263--84818475 Score: 186
Period size: 46 Copynumber: 4.7 Consensus size: 44
84818253 ATTGTGAGCT
* * *
84818263 AGTGTAAGACATGTTTGGGACATGCATCGACACATC-ATGA-GAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-C-TCGA-GACGAGTC
* * *
84818308 AGTGTAGGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGAGT-C
84818355 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG--AGTC
* *
84818402 AGTGTAAGACATGTCTGGGACATGCATTGG-CTACGAGA--TGT-
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGAGTC
* *
84818443 TGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
84818476 ACAGATATGC
Statistics
Matches: 142, Mismatches: 14, Indels: 25
0.78 0.08 0.14
Matches are distributed among these distances:
41 8 0.06
42 15 0.11
43 6 0.04
45 13 0.09
46 66 0.46
47 23 0.16
48 11 0.08
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGTC
Found at i:84829816 original size:37 final size:36
Alignment explanation
Indices: 84829766--84829843 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 36
84829756 TTATTACGAA
* *
84829766 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATC-G
*
84829803 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
84829839 GTCTT
1 GTCTT
84829844 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 6 0.16
37 29 0.78
38 2 0.05
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (36 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:84830040 original size:47 final size:47
Alignment explanation
Indices: 84829962--84830380 Score: 631
Period size: 47 Copynumber: 8.7 Consensus size: 47
84829952 CCCTTCGGGA
* * * * * *
84829962 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
84830009 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
84830056 CTTATCACATATATACACTTTCACATTCATCATATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
84830103 CTTATCACATATATATACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84830150 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84830197 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATA--TACACTTTCACATTCATCACATCGGCCATTAGGC
84830246 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84830293 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
84830344 CTTATCACATATATATACATGTTCACATCCATCACAT
1 CTTATCACATATATACAC-T-TTCACATTCATCACAT
84830381 AGAATCCTAA
Statistics
Matches: 342, Mismatches: 22, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
47 233 0.68
48 1 0.00
49 61 0.18
51 47 0.14
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:84830420 original size:98 final size:96
Alignment explanation
Indices: 84830019--84830380 Score: 448
Period size: 96 Copynumber: 3.8 Consensus size: 96
84830009 CCTGTCACAT
*
84830019 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATCC
* * * *
84830084 ATCATATCGGCTATTAGGCCTTATCACATAT--
66 ATCACATCAGC-A-TAGGCCTAATCAAATATAG
* *
84830115 ATAT--ACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTTTCACATTC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATCC
* * *
84830178 ATCACATCGGCCATTAGGCCTTATCACATAT--
66 ATCACATCAG-CA-TAGGCCTAATCAAATATAG
* * *
84830209 ATGTACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATCC
* * * *
84830274 ATCACATCGGCCATTAGGCCTTATCACATATAT
66 ATCACATCAG-CA-TAGGCCTAATCAAATATAG
*
84830307 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATGTTCACAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC-T-TTCACAT
84830372 CCATCACAT
64 CCATCACAT
84830381 AGAATCCTAA
Statistics
Matches: 250, Mismatches: 9, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
94 89 0.36
95 1 0.00
96 92 0.37
98 52 0.21
99 1 0.00
100 15 0.06
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (96 bp):
ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATCC
ATCACATCAGCATAGGCCTAATCAAATATAG
Found at i:84842136 original size:42 final size:43
Alignment explanation
Indices: 84842077--84842192 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
84842067 GTCTGAACTT
* * * * * *
84842077 GTTGAGTGGTCTGAGTTCGTGA-GATATGTG-GCATTCGAGCTC
1 GTTGAGAGGTCTGAGTTCATGATG-GATGCGAGCATTCAACCTC
*
84842119 GTTGAGAGGTCTGAGTTCATTATGGATGCGAGCATTCAACCTC
1 GTTGAGAGGTCTGAGTTCATGATGGATGCGAGCATTCAACCTC
*
84842162 GTTGAGAGGTCTGAGTTCATAATGGATGCGA
1 GTTGAGAGGTCTGAGTTCATGATGGATGCGA
84842193 TTTATGTAAC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 23 0.36
43 41 0.64
ACGTcount: A:0.22, C:0.15, G:0.33, T:0.31
Consensus pattern (43 bp):
GTTGAGAGGTCTGAGTTCATGATGGATGCGAGCATTCAACCTC
Found at i:84842166 original size:43 final size:43
Alignment explanation
Indices: 84842107--84842192 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
84842097 GAGATATGTG
* * *
84842107 GCATTCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGCGA
1 GCATTCAACCTCGTTGAGAGGTCTGAGTTCATAATGGATGCGA
84842150 GCATTCAACCTCGTTGAGAGGTCTGAGTTCATAATGGATGCGA
1 GCATTCAACCTCGTTGAGAGGTCTGAGTTCATAATGGATGCGA
84842193 TTTATGTAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.29
Consensus pattern (43 bp):
GCATTCAACCTCGTTGAGAGGTCTGAGTTCATAATGGATGCGA
Found at i:84844159 original size:23 final size:23
Alignment explanation
Indices: 84844133--84844176 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
84844123 CGAAAAAATA
* *
84844133 ATTAAATGTTAAATTTCATGTCT
1 ATTAAATGTGAAATTACATGTCT
*
84844156 ATTATATGTGAAATTACATGT
1 ATTAAATGTGAAATTACATGT
84844177 GTGAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (23 bp):
ATTAAATGTGAAATTACATGTCT
Found at i:84846298 original size:44 final size:44
Alignment explanation
Indices: 84846235--84846322 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
84846225 AAATATGTAT
84846235 GAGTCTATTTTTAAGGAAAATTAACGACACTTCATTTTGAGTTC
1 GAGTCTATTTTTAAGGAAAATTAACGACACTTCATTTTGAGTTC
84846279 GAGTCTATTTTTAAGGAAAATTAACGACACTTCATTTTGAGTTC
1 GAGTCTATTTTTAAGGAAAATTAACGACACTTCATTTTGAGTTC
84846323 TGTAGCTCTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.39
Consensus pattern (44 bp):
GAGTCTATTTTTAAGGAAAATTAACGACACTTCATTTTGAGTTC
Found at i:84846613 original size:50 final size:50
Alignment explanation
Indices: 84846547--84846704 Score: 230
Period size: 50 Copynumber: 3.2 Consensus size: 50
84846537 GATGTACAAG
*
84846547 ATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATGAGAT
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
84846597 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG--
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
** ** *
84846645 CCATGCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGAT
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
* *
84846695 GTGTATATAT
1 ATATATATAT
84846705 ATATTGTGGC
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
48 43 0.45
50 52 0.55
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.32
Consensus pattern (50 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
Found at i:84846674 original size:48 final size:49
Alignment explanation
Indices: 84846553--84846693 Score: 212
Period size: 48 Copynumber: 2.9 Consensus size: 49
84846543 CAAGATATAT
* * *
84846553 ATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATGAGATATATAT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA-ACATAC
* *
84846603 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG-CCATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAACATAC
*
84846651 ATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
84846694 TGTGTATATA
Statistics
Matches: 84, Mismatches: 6, Indels: 3
0.90 0.06 0.03
Matches are distributed among these distances:
48 43 0.51
50 41 0.49
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.29
Consensus pattern (49 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAACATAC
Found at i:84849820 original size:35 final size:31
Alignment explanation
Indices: 84849761--84849840 Score: 90
Period size: 35 Copynumber: 2.5 Consensus size: 31
84849751 AAGGTATGCA
*
84849761 TATATACAATATATATATGCATGGG-CTTTGT
1 TATATATAATATATATATGCATGGGTC-TTGT
84849792 TATATATAATATATATATGCAGATATGGGTCTTGT
1 TATATATAATATATATATGC----ATGGGTCTTGT
*
84849827 TTTATATAATATAT
1 TATATATAATATAT
84849841 TTGTATATGG
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
31 19 0.45
35 22 0.52
36 1 0.02
ACGTcount: A:0.35, C:0.06, G:0.14, T:0.45
Consensus pattern (31 bp):
TATATATAATATATATATGCATGGGTCTTGT
Found at i:84850073 original size:17 final size:18
Alignment explanation
Indices: 84850047--84850084 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
84850037 TGTGAGCCAA
*
84850047 TTATATTTGTGTACCGTG
1 TTATATTTGTGAACCGTG
84850065 TTATA-TTGTGAACCGTG
1 TTATATTTGTGAACCGTG
84850082 TTA
1 TTA
84850085 ACTTGACGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.21, C:0.11, G:0.21, T:0.47
Consensus pattern (18 bp):
TTATATTTGTGAACCGTG
Found at i:84850119 original size:36 final size:36
Alignment explanation
Indices: 84850079--84850159 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 36
84850069 ATTGTGAACC
**
84850079 GTGTTAACTTGA-CGAATTATATTATTATGGTGAATT
1 GTGTTAA-TTGAGCGAATTATATTAAGATGGTGAATT
* * * *
84850115 GTGTTAATTTAGTGATTTGTATTAAGATGGTGAATT
1 GTGTTAATTGAGCGAATTATATTAAGATGGTGAATT
84850151 GTGTTAATT
1 GTGTTAATT
84850160 TGGTGATTTG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
35 3 0.08
36 35 0.92
ACGTcount: A:0.28, C:0.02, G:0.22, T:0.47
Consensus pattern (36 bp):
GTGTTAATTGAGCGAATTATATTAAGATGGTGAATT
Found at i:84850129 original size:18 final size:18
Alignment explanation
Indices: 84850092--84850197 Score: 97
Period size: 18 Copynumber: 5.9 Consensus size: 18
84850082 TTAACTTGAC
*
84850092 GAATTATATT-ATTATGGT
1 GAATTGTATTAATT-TGGT
* *
84850110 GAATTGTGTTAATTTAGT
1 GAATTGTATTAATTTGGT
* **
84850128 GATTTGTATTAAGATGGT
1 GAATTGTATTAATTTGGT
*
84850146 GAATTGTGTTAATTTGGT
1 GAATTGTATTAATTTGGT
* * *
84850164 GATTTGTATTAATATGGA
1 GAATTGTATTAATTTGGT
*
84850182 GAACTGTATTAATTTG
1 GAATTGTATTAATTTG
84850198 CCAAACTGTG
Statistics
Matches: 68, Mismatches: 19, Indels: 2
0.76 0.21 0.02
Matches are distributed among these distances:
18 65 0.96
19 3 0.04
ACGTcount: A:0.29, C:0.01, G:0.23, T:0.47
Consensus pattern (18 bp):
GAATTGTATTAATTTGGT
Found at i:84850197 original size:36 final size:36
Alignment explanation
Indices: 84850098--84850197 Score: 146
Period size: 36 Copynumber: 2.8 Consensus size: 36
84850088 TGACGAATTA
* *
84850098 TATTATTATGGTGAATTGTGTTAATTTAGTGATTTG
1 TATTAATATGGTGAATTGTGTTAATTTGGTGATTTG
*
84850134 TATTAAGATGGTGAATTGTGTTAATTTGGTGATTTG
1 TATTAATATGGTGAATTGTGTTAATTTGGTGATTTG
* * *
84850170 TATTAATATGGAGAACTGTATTAATTTG
1 TATTAATATGGTGAATTGTGTTAATTTG
84850198 CCAAACTGTG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 57 1.00
ACGTcount: A:0.28, C:0.01, G:0.23, T:0.48
Consensus pattern (36 bp):
TATTAATATGGTGAATTGTGTTAATTTGGTGATTTG
Found at i:84873519 original size:28 final size:28
Alignment explanation
Indices: 84873462--84873669 Score: 350
Period size: 28 Copynumber: 7.5 Consensus size: 28
84873452 TAAATTGTGC
*
84873462 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
84873489 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
84873517 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
84873545 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
84873573 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
84873600 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
84873628 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
84873655 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
84873670 GACTTAATAT
Statistics
Matches: 175, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
27 66 0.38
28 109 0.62
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:84873526 original size:55 final size:55
Alignment explanation
Indices: 84873462--84873669 Score: 362
Period size: 55 Copynumber: 3.8 Consensus size: 55
84873452 TAAATTGTGC
*
84873462 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
84873517 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
84873573 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
84873628 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
84873670 GACTTAATAT
Statistics
Matches: 147, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
55 92 0.63
56 55 0.37
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:84877150 original size:25 final size:25
Alignment explanation
Indices: 84877097--84877144 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
84877087 CAAGGTTAAT
*
84877097 CAAAGTTTAAATGGAAAACTAAAAA
1 CAAAGTTTAAATGGAAAACGAAAAA
*
84877122 CAAAGTTTAACTGGAAAA-GAAAA
1 CAAAGTTTAAATGGAAAACGAAAA
84877145 TCCAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.58, C:0.08, G:0.15, T:0.19
Consensus pattern (25 bp):
CAAAGTTTAAATGGAAAACGAAAAA
Found at i:84881042 original size:46 final size:45
Alignment explanation
Indices: 84880874--84881044 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 45
84880864 TAACCCGCCT
* * *
84880874 ATAAGTGAACTCGGACCCAACTCAACGAGCTCGGGCGTTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGCATCC
* * *
84880920 ATAAGTGAACTCGGACTCAACTCAACGAGATCGG-ATGC-CTAGTTAC
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-A--TCC
***
84880966 ATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCC
1 ATAAGT-GAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCATCC
84881013 ATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTC
84881045 ATCCTAATGA
Statistics
Matches: 104, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 61 0.59
47 32 0.31
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCC
Found at i:84884516 original size:28 final size:27
Alignment explanation
Indices: 84884430--84884519 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
84884420 GTGACAGAGT
*
84884430 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
84884459 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
84884486 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
84884514 CACCAG
1 CACCAG
84884520 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:84884672 original size:28 final size:28
Alignment explanation
Indices: 84884625--84884689 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
84884615 AAATTAACCC
*
84884625 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
84884653 TAGGGGTATAACGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
84884681 TAGGGGTAT
1 TAGGGGTAT
84884690 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:84890337 original size:42 final size:41
Alignment explanation
Indices: 84890258--84890444 Score: 137
Period size: 42 Copynumber: 4.5 Consensus size: 41
84890248 AATTCGGATA
* *
84890258 TATATATGTGGCACATAGTGTGCGATTCAAGAA-AGCTTCAGC
1 TATATAT-TGGCACTTAGTGTGCGATT-TAGAATAGCTTCAGC
* *
84890300 TATATATATGGCACTTAGTGTGCGATTTGGAATAGCTTCAAC
1 TATATAT-TGGCACTTAGTGTGCGATTTAGAATAGCTTCAGC
* * * **** *
84890342 TATAT-TTGGTACCTAGTGTGAGAGACCGAGATAGCTTCGGC
1 TATATATTGGCACTTAGTGTGCGATTTAGA-ATAGCTTCAGC
* * * * * *
84890383 TATGTA-AGGCACTTAGTGTGCAAAATTATAATAGCTTCGGC
1 TATATATTGGCACTTAGTGTGC-GATTTAGAATAGCTTCAGC
*
84890424 TATGTATTGGCACTTAGTGTG
1 TATATATTGGCACTTAGTGTG
84890445 TGAGATACCG
Statistics
Matches: 114, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
40 16 0.14
41 45 0.39
42 53 0.46
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.33
Consensus pattern (41 bp):
TATATATTGGCACTTAGTGTGCGATTTAGAATAGCTTCAGC
Found at i:84893093 original size:42 final size:42
Alignment explanation
Indices: 84893029--84893233 Score: 275
Period size: 42 Copynumber: 4.9 Consensus size: 42
84893019 GTTACTTGGA
* * * *
84893029 AATCTCGCACACTAAGTGCCAATACGTAGCTGAAGCTAACTC
1 AATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
*
84893071 AATCACGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
1 AATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
*
84893113 AATCTTGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
1 AATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
* * *
84893155 GATCTTGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTT
1 AATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
* * * * * *
84893197 GATCTCACATACTAAGTGCCATTTCATAGCTGAAGCT
1 AATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCT
84893234 TCATCAAATA
Statistics
Matches: 148, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 148 1.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (42 bp):
AATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
Found at i:84896410 original size:8 final size:8
Alignment explanation
Indices: 84896368--84896392 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
84896358 ATATAGACTA
84896368 AATAAAAT
1 AATAAAAT
84896376 AATAAAAT
1 AATAAAAT
84896384 AATAAAAT
1 AATAAAAT
84896392 A
1 A
84896393 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:84896416 original size:29 final size:31
Alignment explanation
Indices: 84896365--84896433 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 31
84896355 TATATATAGA
*
84896365 CTAAATAAAATAATAAAATAATAA-AA-TAT
1 CTAATTAAAATAATAAAATAATAATAATTAT
* *
84896394 CTTATTAAAAT-ATTAAATAAATAATAATTAT
1 CTAATTAAAATAATAAAAT-AATAATAATTAT
84896425 CTAATTAAA
1 CTAATTAAA
84896434 TAACTATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 6 0.18
29 14 0.42
30 2 0.06
31 11 0.33
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (31 bp):
CTAATTAAAATAATAAAATAATAATAATTAT
Found at i:84907713 original size:27 final size:27
Alignment explanation
Indices: 84907673--84907762 Score: 74
Period size: 27 Copynumber: 3.4 Consensus size: 27
84907663 CCATCAGTGA
*
84907673 CGGT-AATATAATCGACACACAGCCAT
1 CGGTAAATATGATCGACACACAGCCAT
* *** *
84907699 GGGTAAATATGATCGACATGGAGTCAT
1 CGGTAAATATGATCGACACACAGCCAT
* * * *
84907726 CGATAAATATGATAGGCACATAGCCAT
1 CGGTAAATATGATCGACACACAGCCAT
*
84907753 TGGTAAATAT
1 CGGTAAATAT
84907763 TTAGGTTGGC
Statistics
Matches: 47, Mismatches: 16, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
26 3 0.06
27 44 0.94
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (27 bp):
CGGTAAATATGATCGACACACAGCCAT
Found at i:84911382 original size:44 final size:44
Alignment explanation
Indices: 84911287--84911451 Score: 244
Period size: 43 Copynumber: 3.8 Consensus size: 44
84911277 AAGGTAATGG
**
84911287 CCTTTAGCGGCGCTTTTCCCACAAACACCGCT-AAAAGTCGCAA
1 CCTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAAAGTCGTGA
* *
84911330 CCTGTAGCGGCGCTTTTCCCACAAATACCGCTAAAAAGTCGTGA
1 CCTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAAAGTCGTGA
* *
84911374 CCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAA-CCGTGA
1 CCTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAAAGTCGTGA
* *
84911417 CCTTTAACGGCGCTTTTCCCACAAACGCCGCTAAA
1 CCTTTAGCGGCGCTTTTCCCACAAACACCGCTAAA
84911452 GGTCATGAAA
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
43 69 0.62
44 43 0.38
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.22
Consensus pattern (44 bp):
CCTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAAAGTCGTGA
Found at i:84911384 original size:87 final size:87
Alignment explanation
Indices: 84911287--84911451 Score: 249
Period size: 87 Copynumber: 1.9 Consensus size: 87
84911277 AAGGTAATGG
** *
84911287 CCTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAAGTCGCAACCTGTAGCGGCGCTTTTCCCAC
1 CCTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAAACCGCAACCTGTAACGGCGCTTTTCCCAC
*
84911352 AAATACCGCTAAAAAGTCGTGA
66 AAACACCGCTAAAAAGTCGTGA
* ** *
84911374 CCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAACCGTGACCTTTAACGGCGCTTTTCCCAC
1 CCTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAAACCGCAACCTGTAACGGCGCTTTTCCCAC
*
84911439 AAACGCCGCTAAA
66 AAACACCGCTAAA
84911452 GGTCATGAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
87 69 1.00
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.22
Consensus pattern (87 bp):
CCTTTAGCGGCGCTTTTCCCACAAACACCGCTAAAAACCGCAACCTGTAACGGCGCTTTTCCCAC
AAACACCGCTAAAAAGTCGTGA
Found at i:84912164 original size:23 final size:23
Alignment explanation
Indices: 84912137--84912441 Score: 243
Period size: 23 Copynumber: 13.3 Consensus size: 23
84912127 TTCCAGCAAC
*
84912137 TAAACACTTCAATTTGCAGCGA-T
1 TAAACACTTCAATTTACAGC-ATT
* * **
84912160 AAAACA-TCTCAATTTCCAGCAAC
1 TAAACACT-TCAATTTACAGCATT
*
84912183 TAAACACTTCAATTTGCAGTACA-T
1 TAAACACTTCAATTTACAG--CATT
* * *
84912207 AAAACACTTCATTTTACAACATT
1 TAAACACTTCAATTTACAGCATT
*
84912230 TAAGCACTTCAATTTACAGCATT
1 TAAACACTTCAATTTACAGCATT
*
84912253 TAAACACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
84912277 T-AACA-TCTCAATTAACAACATT
1 TAAACACT-TCAATTTACAGCATT
* *
84912299 TATACAAC-TCAA-TTACAGTGA-T
1 TAAAC-ACTTCAATTTACAG-CATT
* **
84912321 AAAACA-TCTCAATTT-CTAGCAAC
1 TAAACACT-TCAATTTAC-AGCATT
* * *
84912344 TAAACACTTCAATTTGCAGTACT
1 TAAACACTTCAATTTACAGCATT
*
84912367 TAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
84912390 TAAACACTTCAATTTACAGCATT
1 TAAACACTTCAATTTACAGCATT
*
84912413 TAAACACTTCAATTTGCAGCATT
1 TAAACACTTCAATTTACAGCATT
84912436 TAAACA
1 TAAACA
84912442 ACAGCAGCCA
Statistics
Matches: 226, Mismatches: 37, Indels: 38
0.75 0.12 0.13
Matches are distributed among these distances:
21 1 0.00
22 22 0.10
23 179 0.79
24 22 0.10
25 2 0.01
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.32
Consensus pattern (23 bp):
TAAACACTTCAATTTACAGCATT
Found at i:84915351 original size:8 final size:8
Alignment explanation
Indices: 84915340--84915416 Score: 117
Period size: 8 Copynumber: 10.1 Consensus size: 8
84915330 ATATTAAATA
84915340 TTAAATTT
1 TTAAATTT
84915348 TTAAATTT
1 TTAAATTT
*
84915356 TT-TATTT
1 TTAAATTT
84915363 TTAAA-TT
1 TTAAATTT
84915370 TTAAA-TT
1 TTAAATTT
84915377 TT-AATTT
1 TTAAATTT
84915384 TTAAATTT
1 TTAAATTT
84915392 TTAAATTT
1 TTAAATTT
84915400 TTAAATTT
1 TTAAATTT
84915408 TTAAATTT
1 TTAAATTT
84915416 T
1 T
84915417 GAGTTTATTT
Statistics
Matches: 64, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
6 2 0.03
7 21 0.33
8 41 0.64
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (8 bp):
TTAAATTT
Found at i:84915351 original size:15 final size:15
Alignment explanation
Indices: 84915333--84915416 Score: 116
Period size: 15 Copynumber: 5.6 Consensus size: 15
84915323 GACTAAAATA
*
84915333 TTAAATATTAAATTT
1 TTAAATTTTAAATTT
**
84915348 TTAAATTTTTTATTT
1 TTAAATTTTAAATTT
84915363 TTAAATTTTAAA-TT
1 TTAAATTTTAAATTT
*
84915377 TTAATTTTTAAATTT
1 TTAAATTTTAAATTT
84915392 TTAAATTTTTAAATTT
1 TTAAA-TTTTAAATTT
84915408 TTAAATTTT
1 TTAAATTTT
84915417 GAGTTTATTT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
14 13 0.22
15 32 0.53
16 15 0.25
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TTAAATTTTAAATTT
Found at i:84915382 original size:6 final size:7
Alignment explanation
Indices: 84915328--84915416 Score: 88
Period size: 7 Copynumber: 12.0 Consensus size: 7
84915318 ATATGGACTA
*
84915328 AAATATT
1 AAATTTT
*
84915335 AAATATT
1 AAATTTT
84915342 AAATTTTT
1 AAA-TTTT
84915350 AAATTTTT
1 AAA-TTTT
* *
84915358 TATTTTT
1 AAATTTT
84915365 AAATTTT
1 AAATTTT
84915372 AAATTTT
1 AAATTTT
*
84915379 AATTTTT
1 AAATTTT
84915386 AAATTTTT
1 AAA-TTTT
84915394 AAATTTTT
1 AAA-TTTT
84915402 AAATTTTT
1 AAA-TTTT
84915410 AAATTTT
1 AAATTTT
84915417 GAGTTTATTT
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
7 38 0.52
8 35 0.48
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (7 bp):
AAATTTT
Found at i:84915429 original size:44 final size:44
Alignment explanation
Indices: 84915340--84915430 Score: 130
Period size: 44 Copynumber: 2.1 Consensus size: 44
84915330 ATATTAAATA
* *
84915340 TTAAATTTTTAAATTTTTTATTTTTAAATTTTAAATTTTAATTT
1 TTAAATTTTTAAATTTTTAATTTTTAAATTTTAAAGTTTAATTT
* *
84915384 TTAAATTTTTAAATTTTTAAATTTTTAAATTTT-GAGTTTATTTT
1 TTAAATTTTTAAATTTTT-AATTTTTAAATTTTAAAGTTTAATTT
84915428 TTA
1 TTA
84915431 TTTCGGTTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 29 0.69
45 13 0.31
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (44 bp):
TTAAATTTTTAAATTTTTAATTTTTAAATTTTAAAGTTTAATTT
Found at i:84916034 original size:15 final size:15
Alignment explanation
Indices: 84916011--84916061 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
84916001 ATACCCATGG
*
84916011 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
**
84916026 CCATAAAACCCGAAA
1 CCATAAAACCTTAAA
*
84916041 CCAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
84916055 CCTTAAA
1 CCATAAA
84916062 TATTAAACCG
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.47, C:0.29, G:0.04, T:0.20
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:84916374 original size:41 final size:41
Alignment explanation
Indices: 84916313--84916847 Score: 712
Period size: 41 Copynumber: 13.0 Consensus size: 41
84916303 AGGGGTTATA
* *
84916313 TGACTTTTAGCGGCGTTTTACCAAAAACGCCGCTATTACTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
** *
84916354 TGGTTTTTAGCGGCGTTTTACCAAAGGCGCCGCTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
* * *
84916395 CGACTTTTAGGGGCGTTTTACCAAAAGCGCCGCTAATGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
**
84916436 TGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
84916477 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
* *
84916518 CGACTTTTAGCGGCGTTTTACCAAAAGCGCAGCTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
**
84916559 TGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
* * * * *
84916600 CGAATTTTAGCGACGTTTTACCAAAAGCGCTGCTATTGCTT
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
** * * **
84916641 TGGTTTTTAGCGGTGTTCTACCAAAAGCGCCATTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
*
84916682 TGACTTTTAGCGGCGTTTTACCAAAAGCCCCGCTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
* * *
84916723 CGACTTTTAGCGGCGTTTTACCAAAAGCACCACTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
* * * *
84916764 TGACTTTTACCGGTGTTTTACCAAAGGCACCGCTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
* * * * *
84916805 T-ATTTTTAGCGGCATTTTAACAAAAAACGCCTCTATTGCTC
1 TGACTTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTATTGCTC
84916846 TG
1 TG
84916848 TGTTTTACAA
Statistics
Matches: 428, Mismatches: 64, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
40 13 0.03
41 415 0.97
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (41 bp):
TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
Found at i:84917517 original size:177 final size:176
Alignment explanation
Indices: 84916954--84917520 Score: 821
Period size: 177 Copynumber: 3.2 Consensus size: 176
84916944 TTTGGTGACT
* * * * *
84916954 TAAATCTGCTCCATTGCCGATACATGGAGATAAGATTTGCCATCCTCGATCTGCTCCACAACTAC
1 TAAATCTACTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCACCACTGC
*
84917019 ATAGGGAGATAAAATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAA
66 ATAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAA
* *
84917084 TCGCCAACGTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGC
131 TCGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGC
* *
84917130 TTAAATCTACTCCATTACCGATACATGGAGATAATATTCGCCATCTTCGATCTGCTCCACCACTG
1 -TAAATCTACTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCACCACTG
* * * *
84917195 CCTAAGGAGATAAGATCTTCAATCTTCAGTCTACTTCCTTGCTACCTCA-GAAAATAAGACTACA
65 CATAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACA
** * *
84917259 ATCATCAACCTGCTCTATTGCTGCCTCAGAGAGATAAGGCTAGTGGC
130 ATCGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGC
* * * *
84917306 TAAAATCTACTCTATTGTCGATACATGGAGATAAGATTCACCATCTTTGATCTGCTCCACCACTG
1 T-AAATCTACTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCACCACTG
* * * * * *
84917371 CTTAGGGAGATAAGATCTCCAATCTTTAGTCTGCTTCCTTGCTACATTAGGAAGATAAAACTACA
65 CATAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACA
* *
84917436 ATTGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTAGC
130 ATCGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGC
*
84917483 TAAACCCTACTCCATTGCCGATACATGGAGATAAGATT
1 TAAA-TCTACTCCATTGCCGATACATGGAGATAAGATT
84917521 TGACGTCTTT
Statistics
Matches: 345, Mismatches: 42, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
175 1 0.00
176 157 0.46
177 187 0.54
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28
Consensus pattern (176 bp):
TAAATCTACTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCACCACTGC
ATAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAA
TCGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGC
Found at i:84917820 original size:64 final size:64
Alignment explanation
Indices: 84917719--84918038 Score: 541
Period size: 64 Copynumber: 5.0 Consensus size: 64
84917709 TTCATGTATC
* * *
84917719 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAATACTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
* * *
84917783 ATGCTTATGTCAAATAATTAGGATGCTACGTTCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
* * *
84917847 ATGCTGATGTCAAATAATTAGGATGCTATAATCGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
84917911 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
* *
84917975 ATGCTTATGTCAAATAATTAGGACGTTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
84918039 TTATGAATGA
Statistics
Matches: 241, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 241 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:84920250 original size:16 final size:16
Alignment explanation
Indices: 84920229--84920262 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
84920219 CTCATTGACC
84920229 CTTCGTAAAGTAGGAT
1 CTTCGTAAAGTAGGAT
84920245 CTTCGTAAAGTAGGAT
1 CTTCGTAAAGTAGGAT
84920261 CT
1 CT
84920263 GTTTTTTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (16 bp):
CTTCGTAAAGTAGGAT
Found at i:84924004 original size:119 final size:119
Alignment explanation
Indices: 84923842--84924069 Score: 293
Period size: 120 Copynumber: 1.9 Consensus size: 119
84923832 GGAAATACAC
* * *
84923842 GTAATATATTTACAAAACATATATATACATAAATAGATTTAGAAGCAATTATTTGTA-AAAATAA
1 GTAATAGATTTACAAAACATATATATACATAAATAGATTTAGAAGAAATTATATGTATAAAATAA
*
84923906 CAT-GAAATTAATAATGCATATA-AGAGAAAATTAATTTTATCATGTATTATGTAT
66 CATAG-AATTAATAACGCATATAGA-AGAAAATTAATTTTATCATGTATTATGTAT
* * * *
84923960 GTAATAGATTTA-AAAACATGAATATGTATATGAATAGATTTAGAAGAAATTATATGTATAAGAT
1 GTAATAGATTTACAAAACAT--ATATATACATAAATAGATTTAGAAGAAATTATATGTATAAAAT
* * *
84924024 AACATAGATTTAATAACGTATATAGAATAAAATTAATTTTATCATG
64 AACATAGAATTAATAACGCATATAGAAGAAAATTAATTTTATCATG
84924070 AACCATATAT
Statistics
Matches: 94, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
117 7 0.07
118 11 0.12
119 32 0.34
120 42 0.45
121 2 0.02
ACGTcount: A:0.48, C:0.05, G:0.11, T:0.36
Consensus pattern (119 bp):
GTAATAGATTTACAAAACATATATATACATAAATAGATTTAGAAGAAATTATATGTATAAAATAA
CATAGAATTAATAACGCATATAGAAGAAAATTAATTTTATCATGTATTATGTAT
Found at i:84925641 original size:27 final size:26
Alignment explanation
Indices: 84925582--84925908 Score: 188
Period size: 27 Copynumber: 12.3 Consensus size: 26
84925572 TATTACATCG
84925582 GTAATTTTACAAA-CTGA-GGTATTTC-
1 GTAATTTTA-AAATC-GAGGGTATTTCA
*
84925607 GATAATTTTATAATCCGAGGGTATTTCA
1 G-TAATTTTAAAAT-CGAGGGTATTTCA
* * *
84925635 GTGATTTTACAAATCGAGAGTATTTCG
1 GTAATTTTA-AAATCGAGGGTATTTCA
* *
84925662 GTAATTTTACAATCTGAGGGTATTTCG
1 GTAATTTTAAAATC-GAGGGTATTTCA
**
84925689 GTAATTTTAAAAATAAAGGGTATTTCA
1 GTAATTTT-AAAATCGAGGGTATTTCA
84925716 GTAATTTTACAAA-CTG-GGGATATTTC-
1 GTAATTTTA-AAATC-GAGGG-TATTTCA
* ** **
84925742 GATAATTTTACAATTCGAAAGTATTTTG
1 G-TAATTTTA-AAATCGAGGGTATTTCA
* *
84925770 GTGATTTTACAAATCGCGGGTATTTCA
1 GTAATTTTA-AAATCGAGGGTATTTCA
* * **
84925797 ATAATTTTACAA--GTTGGTATTTCTA
1 GTAATTTTAAAATCGAGGGTATTTC-A
*
84925822 -TAATTTCACAAATCGAGGGTATTTCA
1 GTAATTTTA-AAATCGAGGGTATTTCA
**
84925848 GTAATTTCCCAAATC-AGAGGTATTTCA
1 GTAATTT-TAAAATCGAG-GGTATTTCA
* * * *
84925875 GTAATTTTACAACCTGGGGGTATATCA
1 GTAATTTTAAAATC-GAGGGTATTTCA
84925902 GTAATTT
1 GTAATTT
84925909 ACAAATTCAG
Statistics
Matches: 237, Mismatches: 41, Indels: 46
0.73 0.13 0.14
Matches are distributed among these distances:
24 16 0.07
25 6 0.03
26 27 0.11
27 175 0.74
28 13 0.05
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (26 bp):
GTAATTTTAAAATCGAGGGTATTTCA
Found at i:84925667 original size:54 final size:54
Alignment explanation
Indices: 84925582--84925914 Score: 267
Period size: 54 Copynumber: 6.3 Consensus size: 54
84925572 TATTACATCG
* *
84925582 GTAATTTTACAAA-CTGAG-GTATTTCGATAATTTTATAATCCGAGGGTATTTCA
1 GTAATTTTACAAATC-GAGAGTATTTCGGTAATTTTACAATCCGAGGGTATTTCA
* * *
84925635 GTGATTTTACAAATCGAGAGTATTTCGGTAATTTTACAATCTGAGGGTATTTCG
1 GTAATTTTACAAATCGAGAGTATTTCGGTAATTTTACAATCCGAGGGTATTTCA
* ** * * * *
84925689 GTAATTTTAAAAATAAAGGGTATTTCAGTAATTTTACAAACTG-GGGATATTTC-
1 GTAATTTTACAAATCGAGAGTATTTCGGTAATTTTACAATCCGAGGG-TATTTCA
* * * * *
84925742 GATAATTTTACAATTCGAAAGTATTTTGGTGATTTTACAAAT-CGCGGGTATTTCA
1 G-TAATTTTACAAATCGAGAGTATTTCGGTAATTTTAC-AATCCGAGGGTATTTCA
* * * ** *
84925797 ATAATTTTACAAGT--TG-GTATTTCTATAATTTCACAAAT-CGAGGGTATTTCA
1 GTAATTTTACAAATCGAGAGTATTTCGGTAATTTTAC-AATCCGAGGGTATTTCA
** * * *
84925848 GTAATTTCCCAAATC-AGAGGTATTTCAGTAATTTTACAA-CCTGGGGGTATATCA
1 GTAATTTTACAAATCGAGA-GTATTTCGGTAATTTTACAATCC-GAGGGTATTTCA
84925902 GTAA-TTTACAAAT
1 GTAATTTTACAAAT
84925915 TCAGGGTTTT
Statistics
Matches: 223, Mismatches: 45, Indels: 24
0.76 0.15 0.08
Matches are distributed among these distances:
51 39 0.17
52 1 0.00
53 29 0.13
54 149 0.67
55 5 0.02
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.38
Consensus pattern (54 bp):
GTAATTTTACAAATCGAGAGTATTTCGGTAATTTTACAATCCGAGGGTATTTCA
Found at i:84925713 original size:81 final size:80
Alignment explanation
Indices: 84925583--84925886 Score: 282
Period size: 81 Copynumber: 3.8 Consensus size: 80
84925573 ATTACATCGG
* * * *
84925583 TAATTTTACAAACTGA-GGTATTTCGATAATTTT-ATAATCCGAGGGTATTTCAGTGATTTTACA
1 TAATTTTACAATCTGAGGGTATTTCGGTAATTTTAAAAAT-CGAGGGTATTTCAGTAATTTTACA
*
84925646 AATCGAGAGTATTTCGG
65 AAT-GAGAGTATTTCGA
**
84925663 TAATTTTACAATCTGAGGGTATTTCGGTAATTTTAAAAATAAAGGGTATTTCAGTAATTTTACAA
1 TAATTTTACAATCTGAGGGTATTTCGGTAATTTTAAAAATCGAGGGTATTTCAGTAATTTTACAA
*
84925728 ACTG-GGGATATTTCGA
66 A-TGAGAG-TATTTCGA
** * * * * *
84925744 TAATTTTACAAT-TCGAAAGTATTTTGGTGATTTTACAAATCGCGGGTATTTCAATAATTTTACA
1 TAATTTTACAATCT-GAGGGTATTTCGGTAATTTTAAAAATCGAGGGTATTTCAGTAATTTTACA
* * *
84925808 AGT-TG-GTATTTCTA
65 AATGAGAGTATTTCGA
* * ***
84925822 TAATTTCACAAATC-GAGGGTATTTCAGTAATTTCCCAAATC-AGAGGTATTTCAGTAATTTTAC
1 TAATTTTAC-AATCTGAGGGTATTTCGGTAATTTTAAAAATCGAG-GGTATTTCAGTAATTTTAC
84925885 AA
64 AA
84925887 CCTGGGGGTA
Statistics
Matches: 186, Mismatches: 29, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
77 1 0.01
78 55 0.30
79 4 0.02
80 20 0.11
81 101 0.54
82 5 0.03
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (80 bp):
TAATTTTACAATCTGAGGGTATTTCGGTAATTTTAAAAATCGAGGGTATTTCAGTAATTTTACAA
ATGAGAGTATTTCGA
Found at i:84928974 original size:12 final size:12
Alignment explanation
Indices: 84928959--84929001 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
84928949 CTCCACAATC
84928959 TCCTCCTAAAAA
1 TCCTCCTAAAAA
** **
84928971 TCCTCCTTTATC
1 TCCTCCTAAAAA
84928983 TCCTCCTAAAAA
1 TCCTCCTAAAAA
84928995 TCCTCCT
1 TCCTCCT
84929002 TTATCTCCTC
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.26, C:0.40, G:0.00, T:0.35
Consensus pattern (12 bp):
TCCTCCTAAAAA
Found at i:84928983 original size:24 final size:24
Alignment explanation
Indices: 84928956--84929012 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
84928946 TTCCTCCACA
84928956 ATCTCCTCCTAAAAATCCTCCTTT
1 ATCTCCTCCTAAAAATCCTCCTTT
84928980 ATCTCCTCCTAAAAATCCTCCTTT
1 ATCTCCTCCTAAAAATCCTCCTTT
84929004 ATCTCCTCC
1 ATCTCCTCC
84929013 ACCGAATTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.23, C:0.40, G:0.00, T:0.37
Consensus pattern (24 bp):
ATCTCCTCCTAAAAATCCTCCTTT
Found at i:84935859 original size:68 final size:67
Alignment explanation
Indices: 84935811--84935935 Score: 166
Period size: 67 Copynumber: 1.9 Consensus size: 67
84935801 AGACATTATG
* * * * *
84935811 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGGGAT
1 ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGTAGACAAGAGAGCTACGGCAT
84935873 AT
66 AT
* *
84935875 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
84935936 AGATAAACTG
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
64 20 0.38
65 4 0.08
66 2 0.04
67 26 0.50
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (67 bp):
ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGTAGACAAGAGAGCTACGGCAT
AT
Found at i:84951053 original size:13 final size:13
Alignment explanation
Indices: 84951035--84951061 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
84951025 GATGATGAAA
84951035 TGCATTTAGAAGT
1 TGCATTTAGAAGT
84951048 TGCATTTAGAAGT
1 TGCATTTAGAAGT
84951061 T
1 T
84951062 ATGCAAGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (13 bp):
TGCATTTAGAAGT
Found at i:84955906 original size:43 final size:43
Alignment explanation
Indices: 84955858--84956016 Score: 128
Period size: 43 Copynumber: 3.7 Consensus size: 43
84955848 AGCTTTTAAA
*
84955858 ATGCCAACGTCCCAGACGCGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
* * * *
84955901 ATGCC-ACTGTCCTAGACAG-GGTCTCACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
*** * * * * *
84955943 ATGTTGATGTCCCATACATGGTCTTATATGTAAATTACAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCA-AATATCG
*
84955987 ATGCCAATGTCCCAGACGTGGTCTTACATG
1 ATGCCAACGTCCCAGACGTGGTCTTACATG
84956017 AAAACACATA
Statistics
Matches: 88, Mismatches: 21, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
42 21 0.24
43 39 0.44
44 28 0.32
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
Found at i:84959876 original size:17 final size:17
Alignment explanation
Indices: 84959839--84959878 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
84959829 TAAGGCTACA
* *
84959839 AAACTGAGACTGTAGGG
1 AAACTGAGACAGTAGCG
*
84959856 AAACTGAGACAGTAGCT
1 AAACTGAGACAGTAGCG
84959873 AAACTG
1 AAACTG
84959879 TGATTGCGCG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.28, T:0.17
Consensus pattern (17 bp):
AAACTGAGACAGTAGCG
Found at i:84963123 original size:28 final size:29
Alignment explanation
Indices: 84963070--84963143 Score: 105
Period size: 28 Copynumber: 2.6 Consensus size: 29
84963060 CGCTTTGTGC
* *
84963070 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTGGGATGGATTACAT
84963099 TATTCTGGTGTGTTTGGGA-GGATTACAT
1 TATTCTGGTGTGTTTGGGATGGATTACAT
* *
84963127 GATACTGGTGTGTTTGG
1 TATTCTGGTGTGTTTGG
84963144 ACATTTTGGC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 23 0.56
29 18 0.44
ACGTcount: A:0.16, C:0.05, G:0.32, T:0.46
Consensus pattern (29 bp):
TATTCTGGTGTGTTTGGGATGGATTACAT
Found at i:84963360 original size:23 final size:21
Alignment explanation
Indices: 84963330--84963411 Score: 85
Period size: 21 Copynumber: 3.9 Consensus size: 21
84963320 GCTTTACTGA
*
84963330 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTC--ATT
* *
84963353 TCAGGCACCTTGTGTGTCATA
1 TCAGGCACCTTATGTGTCATT
* **
84963374 GCAGGCACCTCGTGTGTCATT
1 TCAGGCACCTTATGTGTCATT
84963395 TCAGGCA-CTTATGTGTC
1 TCAGGCACCTTATGTGTC
84963412 GTATTCTGAT
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
20 8 0.16
21 26 0.52
23 16 0.32
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.35
Consensus pattern (21 bp):
TCAGGCACCTTATGTGTCATT
Found at i:84964943 original size:662 final size:663
Alignment explanation
Indices: 84963679--84965005 Score: 2593
Period size: 662 Copynumber: 2.0 Consensus size: 663
84963669 TAATATAGAT
84963679 GATATATGATGCCATTTGATGAAAAACTATTGCCGAGATATGAAATTAAAGCATAATTAACACAT
1 GATATATGATGCCATTTGATGAAAAACTATTGCCGAGATATGAAATTAAAGCATAATTAACACAT
84963744 ATGACTTATATTGTTACATGTTTGATGTCTATTATTTATTATAGTATTTATAATTTGAATTATGG
66 ATGACTTATATTGTTACATGTTTGATGTCTATTATTTATTATAGTATTTATAATTTGAATTATGG
*
84963809 TAATACCACTGAGTACAAACATACTCAACGTATGATTGTATTACTATAATTCAAATTATTTATTA
131 TAATACCACTGAGTACAAACATACTCAACGTACGATTGTATTACTATAATTCAAATTATTTATTA
84963874 TTAAATATTAAATTTAAATTATGTATATGGTAAGAGAAGTATGAGTTAGTGATATTGAGATATTT
196 TTAAATATTAAATTTAAATTATGTATATGGTAAGAGAAGTATGAGTTAGTGATATTGAGATATTT
84963939 GAAATGTGTTTATGATGAGAAGGAACTTAGAAATGTAAGAATAGAAGTTCATGATAAGTATGTGA
261 GAAATGTGTTTATGATGAGAAGGAACTTAGAAATGTAAGAATAGAAGTTCATGATAAGTATGTGA
84964004 CAATGTACGAAATGAGATAATCAAAAGTTGAGAAATGATGAAACGTGAATGAAATGAAAGTTTAT
326 CAATGTACGAAATGAGATAATCAAAAGTTGAGAAATGATGAAACGTGAATGAAATGAAAGTTTAT
84964069 ATTGTGATAAACTTATCTATGTTTGTGTGGCATTCATATGATATTATGTGTCTGACTTGTTTGGT
391 ATTGTGATAAACTTATCTATGTTTGTGTGGCATTCATATGATATTATGTGTCTGACTTGTTTGGT
84964134 TAAGTAAATGCTATGAGTAAATTTACTCAAAATTCATGGAATGTATGTTCAAGTACACTAGTTTG
456 TAAGTAAATGCTATGAGTAAATTTACTCAAAATTCATGGAATGTATGTTCAAGTACACTAGTTTG
*
84964199 AAATGGATAATTGAAAAGTTTGTGTAACATAATCATGTATGTTAATTTGTTTGAAGTTAATTATG
521 AAATGGATAATTGAAAAGTTTGTGTAACATAATCATGTATGTTAATTTGTTTGAAGTGAATTATG
84964264 TAATTGTGATGATATGATGTTGATGATAAACGCTAAGTTATATGTGTGTATTTACGAGAACTCAG
586 TAATTGTGATGATATGATGTTGATGATAAACGCTAAGTTATATGTGTGTATTTACGAGAACTCAG
84964329 TTAGAGGCTTTAC
651 TTAGAGGCTTTAC
*
84964342 GATATATGATGCCATTTGATGAAAGACTATTGCCGAGATATGAAATTAAAGCATAATTAACACAT
1 GATATATGATGCCATTTGATGAAAAACTATTGCCGAGATATGAAATTAAAGCATAATTAACACAT
84964407 ATGACTTATATTGTTACATGTTTGATGTCTATTATTTATTATAGTATTTATAATTTGAATTATGG
66 ATGACTTATATTGTTACATGTTTGATGTCTATTATTTATTATAGTATTTATAATTTGAATTATGG
84964472 TAATACCACTGAGTACAAACATACTCAACGTACGATTGTATTACTATAATTCAAATTATTTATTA
131 TAATACCACTGAGTACAAACATACTCAACGTACGATTGTATTACTATAATTCAAATTATTTATTA
*
84964537 TTAAATGTTAAATTTAAATTATGTATATGGTAAGAGAAGTATGAGTTAGTGATATTGAGATATTT
196 TTAAATATTAAATTTAAATTATGTATATGGTAAGAGAAGTATGAGTTAGTGATATTGAGATATTT
*
84964602 GAAATGTGTTTATGATGAGAAGGAACTTAGAAA-GTAAGAATAGAAGTTCATGATATGTATGTGA
261 GAAATGTGTTTATGATGAGAAGGAACTTAGAAATGTAAGAATAGAAGTTCATGATAAGTATGTGA
84964666 CAATGTACGAAATGAGATAATCAAAAGTTGAGAAATGATGAAACGTGAATGAAATGAAAGTTTAT
326 CAATGTACGAAATGAGATAATCAAAAGTTGAGAAATGATGAAACGTGAATGAAATGAAAGTTTAT
84964731 ATTGTGATAAACTTATCTATGTTTGTGTGGCATTCATATGATATTATGTGTCTGACTTGTTTGGT
391 ATTGTGATAAACTTATCTATGTTTGTGTGGCATTCATATGATATTATGTGTCTGACTTGTTTGGT
84964796 TAAGTAAATGCTATGAGTAAATTTACTCAAAATTCATGGAATGTATGTTCAAGTACACTAGTTTG
456 TAAGTAAATGCTATGAGTAAATTTACTCAAAATTCATGGAATGTATGTTCAAGTACACTAGTTTG
*
84964861 AAATTGATAATTGAAAAGTTTGTGTAACATAATCATGTATGTTAATTTGTTTGAAGTGAATTATG
521 AAATGGATAATTGAAAAGTTTGTGTAACATAATCATGTATGTTAATTTGTTTGAAGTGAATTATG
84964926 TAATTGTGATGATATGATGTTGATGATAAACGCTAAGTTATATGTGTGTATTTACGAGAACTCAG
586 TAATTGTGATGATATGATGTTGATGATAAACGCTAAGTTATATGTGTGTATTTACGAGAACTCAG
84964991 TTAGAGGCTTTAC
651 TTAGAGGCTTTAC
84965004 GA
1 GA
84965006 CCTCACCCTC
Statistics
Matches: 658, Mismatches: 6, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
662 368 0.56
663 290 0.44
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.37
Consensus pattern (663 bp):
GATATATGATGCCATTTGATGAAAAACTATTGCCGAGATATGAAATTAAAGCATAATTAACACAT
ATGACTTATATTGTTACATGTTTGATGTCTATTATTTATTATAGTATTTATAATTTGAATTATGG
TAATACCACTGAGTACAAACATACTCAACGTACGATTGTATTACTATAATTCAAATTATTTATTA
TTAAATATTAAATTTAAATTATGTATATGGTAAGAGAAGTATGAGTTAGTGATATTGAGATATTT
GAAATGTGTTTATGATGAGAAGGAACTTAGAAATGTAAGAATAGAAGTTCATGATAAGTATGTGA
CAATGTACGAAATGAGATAATCAAAAGTTGAGAAATGATGAAACGTGAATGAAATGAAAGTTTAT
ATTGTGATAAACTTATCTATGTTTGTGTGGCATTCATATGATATTATGTGTCTGACTTGTTTGGT
TAAGTAAATGCTATGAGTAAATTTACTCAAAATTCATGGAATGTATGTTCAAGTACACTAGTTTG
AAATGGATAATTGAAAAGTTTGTGTAACATAATCATGTATGTTAATTTGTTTGAAGTGAATTATG
TAATTGTGATGATATGATGTTGATGATAAACGCTAAGTTATATGTGTGTATTTACGAGAACTCAG
TTAGAGGCTTTAC
Found at i:84969051 original size:46 final size:46
Alignment explanation
Indices: 84969001--84969173 Score: 167
Period size: 46 Copynumber: 3.7 Consensus size: 46
84968991 TGGTTGAGCA
*
84969001 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACG
* * * * *
84969047 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAA--A--CG
* * *
84969094 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACG
*
84969140 -CCCAAGCTCGTTGAGTTGAGTCCGAA-TTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCC-AAGTTCACTTA
84969174 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
43 6 0.06
45 7 0.07
46 53 0.51
47 30 0.29
48 3 0.03
50 5 0.05
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACG
Found at i:84969435 original size:19 final size:20
Alignment explanation
Indices: 84969398--84969435 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
84969388 ATAAGGTGGT
84969398 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
84969418 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
84969436 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:84977684 original size:33 final size:32
Alignment explanation
Indices: 84977647--84977742 Score: 104
Period size: 34 Copynumber: 2.9 Consensus size: 32
84977637 CTACGGGTCA
* *
84977647 TACTGTTATCTGAAAAGGGGCTAAGGCCCAGT-T
1 TACTG-TATCTGAAAA-GGGCTTAGGCCCAGTAC
*
84977680 TACTGTATTCTGAAAAGGGCTTCGGCCCAGTACC
1 TACTGTA-TCTGAAAAGGGCTTAGGCCCAGTA-C
*
84977714 TACTGCTATCTGAATAGGGCTTAGGCCCA
1 TACTG-TATCTGAAAAGGGCTTAGGCCCA
84977743 ATGGGCTTGA
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
32 15 0.28
33 13 0.24
34 24 0.44
35 2 0.04
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (32 bp):
TACTGTATCTGAAAAGGGCTTAGGCCCAGTAC
Found at i:84980894 original size:27 final size:27
Alignment explanation
Indices: 84980863--84980915 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
84980853 TACACTTAAG
84980863 TCATTGCTTGTCCTCAAGCAACACAAT
1 TCATTGCTTGTCCTCAAGCAACACAAT
84980890 TCATTGCTTGTCCTCAAGCAACACAA
1 TCATTGCTTGTCCTCAAGCAACACAA
84980916 ATAAAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.28
Consensus pattern (27 bp):
TCATTGCTTGTCCTCAAGCAACACAAT
Found at i:84982975 original size:43 final size:42
Alignment explanation
Indices: 84982911--84983066 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 42
84982901 TGTGATATCG
84982911 TGTAAGACCACGTCTGGGACATTGGCATCGATTTGGTATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGATTT-G-ATTTACA
* * *
84982955 TTTAAGACTA-GTCTGGGACATTGGCATCGTACTTGATTT-CA
1 TGTAAGACCACGTCTGGGACATTGGCATCG-ATTTGATTTACA
* * *
84982996 TGTAACACC-CTGTCTGGGACAATGGCATCAATATTTGA-TTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATC--GATTTGATTTACA
84983039 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
84983067 GGTACAAGCT
Statistics
Matches: 94, Mismatches: 11, Indels: 15
0.78 0.09 0.12
Matches are distributed among these distances:
41 8 0.09
42 23 0.24
43 51 0.54
44 12 0.13
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATTTGATTTACA
Found at i:84990736 original size:43 final size:43
Alignment explanation
Indices: 84990583--84990737 Score: 167
Period size: 43 Copynumber: 3.6 Consensus size: 43
84990573 TGATATTGTA
*
84990583 TAAGACCACGTCTGGGATGTTGGCATCGAT-TTGGTATTTACGTG
1 TAAGACCACGTCTGGGATGTTGGCATCGATATTTG-A-TTACGTG
* * *
84990627 TAAAACCACGTCTGGGATGTTGGCATCG-TACTTGATTTCGTG
1 TAAGACCACGTCTGGGATGTTGGCATCGATATTTGATTACGTG
* *
84990669 TAAGACC-CTATCTGGGATAG-TGGCATCGATATTTGATTACATG
1 TAAGACCAC-GTCTGGGAT-GTTGGCATCGATATTTGATTACGTG
*
84990712 TAAGACCACGT-TCGGGACGTTGGCAT
1 TAAGACCACGTCT-GGGATGTTGGCAT
84990738 TGTACAAGCT
Statistics
Matches: 93, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
41 1 0.01
42 30 0.32
43 32 0.34
44 30 0.32
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (43 bp):
TAAGACCACGTCTGGGATGTTGGCATCGATATTTGATTACGTG
Found at i:84997191 original size:47 final size:47
Alignment explanation
Indices: 84997134--84997236 Score: 206
Period size: 47 Copynumber: 2.2 Consensus size: 47
84997124 TCGAAAATTG
84997134 GTAAGAAATTGAGTAAGTTATGATAATCCTATTGACTATACTCAAAA
1 GTAAGAAATTGAGTAAGTTATGATAATCCTATTGACTATACTCAAAA
84997181 GTAAGAAATTGAGTAAGTTATGATAATCCTATTGACTATACTCAAAA
1 GTAAGAAATTGAGTAAGTTATGATAATCCTATTGACTATACTCAAAA
84997228 GTAAGAAAT
1 GTAAGAAAT
84997237 ACTCTCAAGT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.44, C:0.10, G:0.16, T:0.31
Consensus pattern (47 bp):
GTAAGAAATTGAGTAAGTTATGATAATCCTATTGACTATACTCAAAA
Found at i:85001960 original size:26 final size:25
Alignment explanation
Indices: 85001923--85001980 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 25
85001913 ACACACCTTA
85001923 GCTCTTATGAGCATCCCGATTAAA-G
1 GCTCTTATGAGCATCCCG-TTAAATG
*
85001948 GCTCTTCATGAGCTTCCCGTTAAATTG
1 GCTCTT-ATGAGCATCCCGTTAAA-TG
85001975 GCTCTT
1 GCTCTT
85001981 TGTGAGCTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 11 0.38
26 11 0.38
27 7 0.24
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (25 bp):
GCTCTTATGAGCATCCCGTTAAATG
Found at i:85001986 original size:27 final size:26
Alignment explanation
Indices: 85001923--85001995 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 26
85001913 ACACACCTTA
*
85001923 GCTCTT-ATGAGCATCCCGATTAAAG
1 GCTCTTCATGAGCTTCCCGATTAAAG
85001948 GCTCTTCATGAGCTTCCCG-TTAAATTG
1 GCTCTTCATGAGCTTCCCGATTAAA--G
** *
85001975 GCTCTTTGTGAGCTTCTCGAT
1 GCTCTTCATGAGCTTCCCGAT
85001996 AGTGCTCGCT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
25 11 0.28
26 11 0.28
27 17 0.43
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.36
Consensus pattern (26 bp):
GCTCTTCATGAGCTTCCCGATTAAAG
Found at i:85006680 original size:23 final size:23
Alignment explanation
Indices: 85006654--85006697 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
85006644 ATTGGTTTGG
*
85006654 TTTGAGATGATGATAT-GATGAGT
1 TTTGAGAT-ATGAAATAGATGAGT
*
85006677 TTTGTGATATGAAATAGATGA
1 TTTGAGATATGAAATAGATGA
85006698 TATTATGATG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.34, C:0.00, G:0.27, T:0.39
Consensus pattern (23 bp):
TTTGAGATATGAAATAGATGAGT
Found at i:85007621 original size:30 final size:30
Alignment explanation
Indices: 85007585--85007643 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
85007575 GGCATACATA
*
85007585 CACACACGGCCAATAGAGACACCCGTGTGC
1 CACACACGGCCAATAGACACACCCGTGTGC
85007615 CACACACGGCCAATAGACACACCCGTGTG
1 CACACACGGCCAATAGACACACCCGTGTG
85007644 TCTAAGCCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.37, G:0.22, T:0.10
Consensus pattern (30 bp):
CACACACGGCCAATAGACACACCCGTGTGC
Found at i:85008752 original size:20 final size:20
Alignment explanation
Indices: 85008724--85008794 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
85008714 ATTCATTTCT
* *
85008724 ATTCGTATAAACAGTAATTC
1 ATTCATATAAACAGTAGTTC
* *
85008744 ATTCATATAACCAGTAGTGC
1 ATTCATATAAACAGTAGTTC
*
85008764 ATTCGTATAAACAGTAGTTC
1 ATTCATATAAACAGTAGTTC
85008784 A-TCTATATAAA
1 ATTC-ATATAAA
85008795 AACATATTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
19 2 0.05
20 40 0.95
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.34
Consensus pattern (20 bp):
ATTCATATAAACAGTAGTTC
Found at i:85008859 original size:79 final size:79
Alignment explanation
Indices: 85008754--85008913 Score: 266
Period size: 79 Copynumber: 2.0 Consensus size: 79
85008744 ATTCATATAA
*
85008754 CCAGTAGTGCATTCGTATAAACAGTAGTTCATCTATATAAAAACATATTTTATTCATATGATCAG
1 CCAGTAGTGCATTCGTATAAACAGTAGTTCATCTATATAAAAACATATCTTATTCATATGATCAG
*
85008819 TAACAGGAATTATG
66 TAACAAGAATTATG
* * *
85008833 CCAGTAGTTCATTCGTATAAATAGTAGTTCATCTATATGAAAACATATCTTATTCATATGATCAG
1 CCAGTAGTGCATTCGTATAAACAGTAGTTCATCTATATAAAAACATATCTTATTCATATGATCAG
*
85008898 TAACAATAATTATG
66 TAACAAGAATTATG
85008912 CC
1 CC
85008914 TGCTAAACCT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
79 75 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (79 bp):
CCAGTAGTGCATTCGTATAAACAGTAGTTCATCTATATAAAAACATATCTTATTCATATGATCAG
TAACAAGAATTATG
Found at i:85009085 original size:23 final size:23
Alignment explanation
Indices: 85009059--85009122 Score: 80
Period size: 22 Copynumber: 2.8 Consensus size: 23
85009049 AAACTTTATT
85009059 GAGCTGAAACGGTAAGCTCTAT-C
1 GAGCTGAAACGGTAAGCTC-ATGC
85009082 GAGCTG-AA-GAGTAAGCTCATGC
1 GAGCTGAAACG-GTAAGCTCATGC
*
85009104 GAGCTAAAACGGTAAGCTC
1 GAGCTGAAACGGTAAGCTC
85009123 CAATAAGCTG
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
21 3 0.08
22 16 0.44
23 16 0.44
24 1 0.03
ACGTcount: A:0.33, C:0.20, G:0.28, T:0.19
Consensus pattern (23 bp):
GAGCTGAAACGGTAAGCTCATGC
Found at i:85009349 original size:23 final size:24
Alignment explanation
Indices: 85009315--85009370 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
85009305 GCATTTAATG
*
85009315 ATCA-ATA-ATTCAATT-TATCAA
1 ATCATATACATTCAATTCAATCAA
*
85009336 ATCATATACATTCAATTCAATTAA
1 ATCATATACATTCAATTCAATCAA
85009360 AT-ATATACATT
1 ATCATATACATT
85009371 TAAATACTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 4 0.13
22 3 0.10
23 17 0.57
24 6 0.20
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.39
Consensus pattern (24 bp):
ATCATATACATTCAATTCAATCAA
Found at i:85015858 original size:25 final size:25
Alignment explanation
Indices: 85015799--85015872 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 25
85015789 TACCTAGATC
* * *
85015799 TCACTACAAAGGTTTTACAGATAAC
1 TCACCACAAAGGATTTACAGATAAA
** *
85015824 TTGCCACAAAGGCTTTACAGATAAA
1 TCACCACAAAGGATTTACAGATAAA
* *
85015849 TCACCGCAAAGGATTTATAGATAA
1 TCACCACAAAGGATTTACAGATAA
85015873 CACAAAGGCT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.26
Consensus pattern (25 bp):
TCACCACAAAGGATTTACAGATAAA
Found at i:85015880 original size:20 final size:20
Alignment explanation
Indices: 85015855--85015894 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
85015845 TAAATCACCG
*
85015855 CAAAGGATTTATAGATAACA
1 CAAAGGATCTATAGATAACA
*
85015875 CAAAGGCTCTATAGATAACA
1 CAAAGGATCTATAGATAACA
85015895 AACCATGAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.15, G:0.15, T:0.23
Consensus pattern (20 bp):
CAAAGGATCTATAGATAACA
Found at i:85020890 original size:30 final size:30
Alignment explanation
Indices: 85020846--85020934 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
85020836 CAAAGATAAC
*
85020846 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
85020875 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
85020905 AAGATATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
85020935 CGATACAATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.11
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:85020894 original size:15 final size:14
Alignment explanation
Indices: 85020846--85020928 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
85020836 CAAAGATAAC
*
85020846 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
85020860 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
85020875 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
85020890 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
85020905 AAGATATCCAGGATA
1 AAGA-AACCCGAATA
85020920 AAGAAACCC
1 AAGAAACCC
85020929 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.17, T:0.11
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:85020934 original size:15 final size:15
Alignment explanation
Indices: 85020857--85020934 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
85020847 AGAAAACCGA
85020857 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
85020872 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
85020886 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
85020901 AATAAAGATATCCAGG
1 -ATAAAGAAATCCAAG
*
85020917 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
85020932 ATA
1 ATA
85020935 CGATACAATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:85024430 original size:28 final size:29
Alignment explanation
Indices: 85024379--85024433 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
85024369 ACAGAGGTTT
*
85024379 TCACATGGCCAAGCACACGCCCGTGTCCC
1 TCACACGGCCAAGCACACGCCCGTGTCCC
* *
85024408 TCACACGGCCTAG-ACACGTCCGTGTC
1 TCACACGGCCAAGCACACGCCCGTGTC
85024434 ATCACCCGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.20, C:0.42, G:0.22, T:0.16
Consensus pattern (29 bp):
TCACACGGCCAAGCACACGCCCGTGTCCC
Found at i:85029772 original size:37 final size:37
Alignment explanation
Indices: 85029722--85029800 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
85029712 TTATTACGAA
* * *
85029722 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
85029759 GTCTTACTCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
85029796 GTCTT
1 GTCTT
85029801 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:85030127 original size:47 final size:47
Alignment explanation
Indices: 85029918--85030379 Score: 825
Period size: 47 Copynumber: 9.7 Consensus size: 47
85029908 GCCCTTCGGG
*
85029918 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
85029968 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
85030017 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
85030066 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
85030113 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
85030160 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
85030207 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
85030254 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
85030301 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
85030348 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
85030380 ATACTATCAT
Statistics
Matches: 409, Mismatches: 3, Indels: 3
0.99 0.01 0.01
Matches are distributed among these distances:
47 273 0.67
49 132 0.32
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:85037606 original size:28 final size:29
Alignment explanation
Indices: 85037534--85037651 Score: 118
Period size: 28 Copynumber: 4.1 Consensus size: 29
85037524 TACCTATATA
* * *
85037534 TATATGGCCCACTAGGCCC-AATCTCTTT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
85037562 TAAAATATGGCCCATTAGGCCC-ATTCACATT
1 T---ATATGGCCCATTAGGCCCAAATCACATT
*
85037593 TATGTGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
85037622 CATATGG-CCACTT-GGCCCAAATCACATT
1 TATATGGCCCA-TTAGGCCCAAATCACATT
85037650 TA
1 TA
85037652 CAGACATGCT
Statistics
Matches: 76, Mismatches: 9, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
28 37 0.49
29 15 0.20
31 24 0.32
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:85037889 original size:16 final size:16
Alignment explanation
Indices: 85037865--85037923 Score: 82
Period size: 16 Copynumber: 3.7 Consensus size: 16
85037855 GTAGCCAAAC
*
85037865 TTTCGGCTTTTTGACA
1 TTTCAGCTTTTTGACA
*
85037881 TTTCAGCTTTTAGACA
1 TTTCAGCTTTTTGACA
*
85037897 TTTCAGCTTTTTGGCA
1 TTTCAGCTTTTTGACA
*
85037913 TTTCGGCTTTT
1 TTTCAGCTTTT
85037924 CGGGATTTGC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.14, C:0.19, G:0.17, T:0.51
Consensus pattern (16 bp):
TTTCAGCTTTTTGACA
Found at i:85037931 original size:16 final size:16
Alignment explanation
Indices: 85037865--85037931 Score: 62
Period size: 16 Copynumber: 4.2 Consensus size: 16
85037855 GTAGCCAAAC
* * *
85037865 TTTCGGCTTTTTGACA
1 TTTCAGCTTTTCGGCA
* *
85037881 TTTCAGCTTTTAGACA
1 TTTCAGCTTTTCGGCA
*
85037897 TTTCAGCTTTTTGGCA
1 TTTCAGCTTTTCGGCA
* *
85037913 TTTCGGCTTTTCGGGA
1 TTTCAGCTTTTCGGCA
85037929 TTT
1 TTT
85037932 GCCGATCTAC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.13, C:0.18, G:0.19, T:0.49
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:85038606 original size:53 final size:51
Alignment explanation
Indices: 85038525--85038684 Score: 169
Period size: 52 Copynumber: 3.1 Consensus size: 51
85038515 CGGATTACAT
* * *
85038525 ATCATACCAATGTCATATCTCAGATATGGTCTTATACGGAATCACATTATCAC
1 ATCATACCAATGCCATAGCTCAGCTATGGTCTTATACGGAA-CACA-TATCAC
* * * *
85038578 ATCACACCAATGCCATAGCCCAGCTATGGTCTTATACGGGAACGCGA-ATGAC
1 ATCATACCAATGCCATAGCTCAGCTATGGTCTTATAC-GGAACAC-ATATCAC
** * *
85038630 ATTGTACCGATGCCATAGCTCAGCTATGGTCTTATACGGAAGCATATATCAC
1 ATCATACCAATGCCATAGCTCAGCTATGGTCTTATACGGAA-CACATATCAC
85038682 ATC
1 ATC
85038685 TTTTTCGTCA
Statistics
Matches: 87, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
51 5 0.06
52 43 0.49
53 34 0.39
54 5 0.06
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (51 bp):
ATCATACCAATGCCATAGCTCAGCTATGGTCTTATACGGAACACATATCAC
Found at i:85045504 original size:8 final size:8
Alignment explanation
Indices: 85045485--85045515 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
85045475 TTGATGAGAG
85045485 GATATGTAT
1 GATAT-TAT
85045494 GATATTAT
1 GATATTAT
85045502 GATATTAT
1 GATATTAT
85045510 GATATT
1 GATATT
85045516 GTTTCTTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 17 0.77
9 5 0.23
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.48
Consensus pattern (8 bp):
GATATTAT
Found at i:85045723 original size:15 final size:15
Alignment explanation
Indices: 85045703--85045758 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
85045693 CGTACTTGGT
85045703 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
85045718 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
* *
85045733 TTTC-TCAATCTTGGA
1 TTTCTTTATTC-TGGA
85045748 TTTCTTTATTC
1 TTTCTTTATTC
85045759 GATTCTCTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
14 4 0.12
15 25 0.76
16 4 0.12
ACGTcount: A:0.12, C:0.16, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Done.