Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 250 of 373
Found at i:85048555 original size:46 final size:46
Alignment explanation
Indices: 85048481--85048648 Score: 144
Period size: 46 Copynumber: 3.6 Consensus size: 46
85048471 TATTTTGGCA
* * *
85048481 TCCGAACTCATTGAGCTGAGTCCAAGTTCAGTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGTGTCCGAGTTCAGTTATGGATGCGAACG
* * * * * *
85048527 TCCGAACTCATTGAGTTGTGTCTGAGTTC-GTGTAATGTA-ACTAGGCA
1 TCCGAACTCATTGAGTTGTGTCCGAGTTCAGT-T-ATGGATGCGA-ACG
* * *
85048574 TCTGAACTCGTTGAGTT-TAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGT-GTCCGAGTTCAGTTATGGATGCGAACG
* * *
85048620 TCCGAACTCGTTGAGTTGAGTTCGAGTTC
1 TCCGAACTCATTGAGTTGTGTCCGAGTTC
85048649 GTGAAATTTA
Statistics
Matches: 94, Mismatches: 21, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
45 2 0.02
46 59 0.63
47 32 0.34
48 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.32
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGTGTCCGAGTTCAGTTATGGATGCGAACG
Found at i:85048601 original size:47 final size:47
Alignment explanation
Indices: 85048527--85048695 Score: 146
Period size: 47 Copynumber: 3.6 Consensus size: 47
85048517 GATGCGAACG
* *
85048527 TCCGAACTCATTGAGTTGTGTCTGAGTTCGTGTAATGTAACTAGGCA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCGTGTAATGTAACTAGGCA
* * * * * * * * *
85048574 TCTGAACTCGTTGAGTTTAGTCCGAGTTCACT-T-ATGGATGCGA-ACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGTAATGTA-ACTAGGCA
* * * *
85048620 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGTGAAATTTAACTAGGCA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCGTGTAATGTAACTAGGCA
* *
85048667 TCCGAATTCATTGAGTTGATTCCGAGTTC
1 TCCGAACTCATTGAGTTGAGTCCGAGTTC
85048696 ACTTATGGAT
Statistics
Matches: 91, Mismatches: 26, Indels: 10
0.72 0.20 0.08
Matches are distributed among these distances:
45 1 0.01
46 33 0.36
47 56 0.62
48 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (47 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCGTGTAATGTAACTAGGCA
Found at i:85048636 original size:93 final size:93
Alignment explanation
Indices: 85048477--85048742 Score: 356
Period size: 93 Copynumber: 2.9 Consensus size: 93
85048467 CGGATATTTT
* * * *
85048477 GGCATCCGAACTCATTGAGCTGAGTCCAAGTTCAGTTATGGATGCGAACGTCCGAACTCATTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
* *
85048542 TTGTGTCTGAGTTCGTGTAATGTAACTA
66 TTGAGTCTGAGTTCGTGAAATGTAACTA
* * *
85048570 GGCATCTGAACTCGTTGAGTTTAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
85048635 TTGAGT-TCGAGTTCGTGAAATTTAACTA
66 TTGAGTCT-GAGTTCGTGAAATGTAACTA
* * * * *
85048663 GGCATCCGAATTCATTGAGTTGATTCCGAGTTCACTTATGGATACGAAC-ACCTGAGCTCGTTGA
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGA
*
85048727 GTTGAGTCCGAGTTCG
65 GTTGAGTCTGAGTTCG
85048743 CTTATGGGCA
Statistics
Matches: 151, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
92 3 0.02
93 148 0.98
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.31
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCTGAGTTCGTGAAATGTAACTA
Found at i:85051829 original size:57 final size:57
Alignment explanation
Indices: 85051733--85051869 Score: 134
Period size: 57 Copynumber: 2.4 Consensus size: 57
85051723 ATTCAACAGA
* * ** * * * *
85051733 ATTACCAGTCCAGGCTAAATCCTTTTTATGACATATGCTCTA-AGGAGCT-TGATCTGG
1 ATTACCCGTCTAGGCTAAATCCAATCTATAACATATGCTCGAGAGGA-CTAT-ATCAGG
*
85051790 ATTACCCGTCTAGGCTAAATCCAATCTATAACATGTGCTCGAGAGGACTCATATCAGG
1 ATTACCCGTCTAGGCTAAATCCAATCTATAACATATGCTCGAGAGGACT-ATATCAGG
* *
85051848 ATTACCCATCTGGGCTAAATCC
1 ATTACCCGTCTAGGCTAAATCC
85051870 TGTTATGTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
57 36 0.55
58 29 0.44
59 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (57 bp):
ATTACCCGTCTAGGCTAAATCCAATCTATAACATATGCTCGAGAGGACTATATCAGG
Found at i:85053461 original size:11 final size:11
Alignment explanation
Indices: 85053445--85053469 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
85053435 GCATGTGATT
85053445 CTACGTAGCAA
1 CTACGTAGCAA
85053456 CTACGTAGCAA
1 CTACGTAGCAA
85053467 CTA
1 CTA
85053470 TGTATGGGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.28, G:0.16, T:0.20
Consensus pattern (11 bp):
CTACGTAGCAA
Found at i:85057054 original size:16 final size:17
Alignment explanation
Indices: 85057023--85057056 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
85057013 TTTTGGGCTT
85057023 AATGGGCCGAAACGGGCC
1 AATGGGCC-AAACGGGCC
85057041 AATGGGCC-AACGGGCC
1 AATGGGCCAAACGGGCC
85057057 CACTTTGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.26, C:0.29, G:0.38, T:0.06
Consensus pattern (17 bp):
AATGGGCCAAACGGGCC
Found at i:85057355 original size:27 final size:26
Alignment explanation
Indices: 85057311--85057362 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
85057301 CTCGCTGCAA
*
85057311 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
85057338 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
85057363 GCAGCCTCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:85064083 original size:27 final size:26
Alignment explanation
Indices: 85064039--85064090 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
85064029 CTCGCTGCAA
*
85064039 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
85064066 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
85064091 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:85064167 original size:27 final size:26
Alignment explanation
Indices: 85064129--85064188 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
85064119 CCACATATAT
* *
85064129 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
85064155 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
85064182 ATATCTG
1 ATATCTG
85064189 GCAGTCTCAC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:85075738 original size:43 final size:43
Alignment explanation
Indices: 85075684--85075802 Score: 193
Period size: 43 Copynumber: 2.8 Consensus size: 43
85075674 TCTTAATTCA
* *
85075684 TTCACCGGCATTATAACCTGCTAGGCTCGAGGCCCGATATTAT
1 TTCACCAGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
* *
85075727 TTCACCTGCATTATAGCCTGCTAGGCTCAAGGCCCGATATTAT
1 TTCACCAGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
*
85075770 TTCACCAGCATTATAGCCTACTAGGCTCGAGGC
1 TTCACCAGCATTATAGCCTGCTAGGCTCGAGGC
85075803 TTGAATGGTA
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 70 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (43 bp):
TTCACCAGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
Found at i:85078047 original size:27 final size:26
Alignment explanation
Indices: 85077999--85078058 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
85077989 GCGAGGCTGC
* *
85077999 CAGATATTGTGACAAAGTCACCATATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
85078026 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
85078052 CAGATAT
1 CAGATAT
85078059 ATATGTGGTG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:85087911 original size:27 final size:27
Alignment explanation
Indices: 85087880--85087932 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
85087870 GCATTTGATA
*
85087880 CTGATTCTG-TACTGGGCCTAGGCCCAC
1 CTGATTCTGTTAATGGG-CTAGGCCCAC
85087907 CTGATTCTGTTAATGGGCTAGGCCCA
1 CTGATTCTGTTAATGGGCTAGGCCCA
85087933 ACTGTTACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 18 0.75
28 6 0.25
ACGTcount: A:0.17, C:0.28, G:0.26, T:0.28
Consensus pattern (27 bp):
CTGATTCTGTTAATGGGCTAGGCCCAC
Found at i:85092408 original size:31 final size:31
Alignment explanation
Indices: 85092336--85092408 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
85092326 TTTGAAGAGT
*
85092336 CACATGCCCGTGTGGGTAGGCCGCCTGGTTA
1 CACACGCCCGTGTGGGTAGGCCGCCTGGTTA
* * ** *
85092367 CACACACCCGTGTGGGTAGGCTGTGTGGTTG
1 CACACGCCCGTGTGGGTAGGCCGCCTGGTTA
85092398 CACACGCCCGT
1 CACACGCCCGT
85092409 TTGGCTTAGG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.14, C:0.30, G:0.34, T:0.22
Consensus pattern (31 bp):
CACACGCCCGTGTGGGTAGGCCGCCTGGTTA
Found at i:85093965 original size:42 final size:42
Alignment explanation
Indices: 85093919--85094209 Score: 433
Period size: 42 Copynumber: 6.9 Consensus size: 42
85093909 ATGTTATAGT
*
85093919 ATATCGATGCCAATAG-CCCA-GCTATGGTCTTATACGAATCTC
1 ATATCGATGCCAAT-GTCCCAGGC-ATGGTCTTACACGAATCTC
** *
85093961 ATATCGATGCCAATGTCCCAAACATGGTCTTACACGAATCAC
1 ATATCGATGCCAATGTCCCAGGCATGGTCTTACACGAATCTC
* * *
85094003 ACATCGATGCCAATGTCTCAGGCATAGTCTTACACGAATCTC
1 ATATCGATGCCAATGTCCCAGGCATGGTCTTACACGAATCTC
85094045 ATATCGATGCCAATGTCCCAGGCATGGTCTTACACGAATCTC
1 ATATCGATGCCAATGTCCCAGGCATGGTCTTACACGAATCTC
*
85094087 ATATCGATGCCAATGTCCCAGGCATGGTCTTACACAAATCTC
1 ATATCGATGCCAATGTCCCAGGCATGGTCTTACACGAATCTC
* ** *
85094129 ATATCGATGTCAATGTCCCAAACATGGTTTTACACGAATCTC
1 ATATCGATGCCAATGTCCCAGGCATGGTCTTACACGAATCTC
*
85094171 ATATCGATGCCAATGTCCCAGGCATAGTCTTACACGAAT
1 ATATCGATGCCAATGTCCCAGGCATGGTCTTACACGAAT
85094210 TATAATCTCG
Statistics
Matches: 224, Mismatches: 23, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
41 1 0.00
42 222 0.99
43 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (42 bp):
ATATCGATGCCAATGTCCCAGGCATGGTCTTACACGAATCTC
Found at i:85098725 original size:16 final size:16
Alignment explanation
Indices: 85098704--85098735 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
85098694 AATATGTGTG
85098704 TATTTTGATGTTTAAT
1 TATTTTGATGTTTAAT
85098720 TATTTTGATGTTTAAT
1 TATTTTGATGTTTAAT
85098736 GGTAGAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62
Consensus pattern (16 bp):
TATTTTGATGTTTAAT
Found at i:85106133 original size:40 final size:41
Alignment explanation
Indices: 85106055--85106139 Score: 95
Period size: 40 Copynumber: 2.1 Consensus size: 41
85106045 ATGTAAACAT
* **
85106055 TAAAAAATGTTAAGATAATTAAATATAAATTTTTAATAA-A
1 TAAAAAATGTTAAAATAATTAAATATAAATTTAAAATAATA
*
85106095 TAAAAAAT-TATAAAATCATTAAATATTAAA-TTAAAATAATA
1 TAAAAAATGT-TAAAATAATTAAATA-TAAATTTAAAATAATA
85106136 TAAA
1 TAAA
85106140 TATATTTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
39 1 0.03
40 28 0.74
41 9 0.24
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.35
Consensus pattern (41 bp):
TAAAAAATGTTAAAATAATTAAATATAAATTTAAAATAATA
Found at i:85106896 original size:21 final size:21
Alignment explanation
Indices: 85106870--85106921 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
85106860 TATCATCCAA
85106870 TAGTAGCATCTAAGAA-AAAAT
1 TAGTAGCATC-AAGAAGAAAAT
*
85106891 TAGTAGCAACAAGAATGAAAAT
1 TAGTAGCATCAAGAA-GAAAAT
*
85106913 TATTAGCAT
1 TAGTAGCAT
85106922 TAATAAGTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 5 0.19
21 9 0.35
22 12 0.46
ACGTcount: A:0.50, C:0.10, G:0.15, T:0.25
Consensus pattern (21 bp):
TAGTAGCATCAAGAAGAAAAT
Found at i:85107389 original size:18 final size:19
Alignment explanation
Indices: 85107362--85107401 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
85107352 TATAATTTAC
85107362 TTTCTAATATAATTTTAAA
1 TTTCTAATATAATTTTAAA
* *
85107381 TTTCT-ATATTATTTTCAA
1 TTTCTAATATAATTTTAAA
85107399 TTT
1 TTT
85107402 TTTTTAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTCTAATATAATTTTAAA
Found at i:85109290 original size:24 final size:26
Alignment explanation
Indices: 85109258--85109308 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
85109248 CAAATAGAAA
85109258 TTTATGTATAATTAA-AAAA-TAATAT
1 TTTATGTAT-ATTAACAAAAGTAATAT
85109283 TTTA-GTATATTAACAAAAGTAATAT
1 TTTATGTATATTAACAAAAGTAATAT
85109308 T
1 T
85109309 AATTAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
23 5 0.21
24 8 0.33
25 11 0.46
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (26 bp):
TTTATGTATATTAACAAAAGTAATAT
Found at i:85124899 original size:10 final size:10
Alignment explanation
Indices: 85124841--85124912 Score: 65
Period size: 11 Copynumber: 6.7 Consensus size: 10
85124831 AAAAGGAAAG
85124841 AGAAGAAAGAA
1 AGAA-AAAGAA
85124852 AGAAAGAAAGAA
1 AG-AA-AAAGAA
85124864 AGAAAGAA-AGA
1 AGAAA-AAGA-A
85124875 AGAAAGAAGAA
1 AGAAA-AAGAA
* *
85124886 AGAAAATGAG
1 AGAAAAAGAA
85124896 AGAAAAAGAA
1 AGAAAAAGAA
85124906 AGAAAAA
1 AGAAAAA
85124913 TTTCCATGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
10 20 0.38
11 21 0.40
12 12 0.23
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.01
Consensus pattern (10 bp):
AGAAAAAGAA
Found at i:85124910 original size:4 final size:4
Alignment explanation
Indices: 85124836--85124890 Score: 87
Period size: 4 Copynumber: 14.0 Consensus size: 4
85124826 AATAAAAAAG
85124836 GAAA GAGAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA G-AA GAAA G-AA
1 GAAA GA-AA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
85124883 GAAA GAAA
1 GAAA GAAA
85124891 ATGAGAGAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
3 6 0.12
4 38 0.79
5 4 0.08
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:85131092 original size:28 final size:28
Alignment explanation
Indices: 85131060--85131187 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
85131050 ATAGTAAGTC
*
85131060 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
85131088 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
85131117 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
85131145 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
85131174 CGCACACTTAGTGC
1 CGCACACTTAGTGC
85131188 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:85131150 original size:57 final size:57
Alignment explanation
Indices: 85131059--85131187 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
85131049 TATAGTAAGT
*
85131059 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
85131116 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
85131173 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
85131188 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:85139097 original size:28 final size:28
Alignment explanation
Indices: 85139065--85139193 Score: 168
Period size: 29 Copynumber: 4.5 Consensus size: 28
85139055 ATAGTAAGTC
*
85139065 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
85139093 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
85139122 CGCACACTTTAGTGCTATATAATCAAACT
1 CGCACAC-TTAGTGCTATATAATCAAACT
* ** * *
85139151 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
85139180 CGCACACTTAGTGC
1 CGCACACTTAGTGC
85139194 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
28 25 0.28
29 57 0.64
30 7 0.08
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:85141030 original size:40 final size:40
Alignment explanation
Indices: 85140984--85141242 Score: 322
Period size: 40 Copynumber: 6.5 Consensus size: 40
85140974 CCAATGTTCT
* **
85140984 ATTTCATATATCTATT-TCCATATAACTAATTCATATAACC
1 ATTTCATATATC-ATTCTTCATATAACCGATTCATATAACC
* * ** *
85141024 AATTCATATATCATTTTTCATATAAGTGATTCGTATAACC
1 ATTTCATATATCATTCTTCATATAACCGATTCATATAACC
* * * **
85141064 ATTTCATAAATCATTTTTTATATAACCGATTTGTATAACC
1 ATTTCATATATCATTCTTCATATAACCGATTCATATAACC
85141104 ATTTCATATATCATTCTTCATATAACCGATTCATATAACC
1 ATTTCATATATCATTCTTCATATAACCGATTCATATAACC
* * *
85141144 ATTTAATATATCATTCTTGACATAACCGATTCATATAACC
1 ATTTCATATATCATTCTTCATATAACCGATTCATATAACC
* * * *
85141184 ATTTCACATATCATTCTTTACATAACCGATTCAAATAACC
1 ATTTCATATATCATTCTTCATATAACCGATTCATATAACC
85141224 ATTTCATATATCATTCTTC
1 ATTTCATATATCATTCTTC
85141243 GCCCAATGAA
Statistics
Matches: 193, Mismatches: 25, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
39 3 0.02
40 190 0.98
ACGTcount: A:0.36, C:0.20, G:0.03, T:0.41
Consensus pattern (40 bp):
ATTTCATATATCATTCTTCATATAACCGATTCATATAACC
Found at i:85141118 original size:12 final size:13
Alignment explanation
Indices: 85140984--85141233 Score: 88
Period size: 13 Copynumber: 18.8 Consensus size: 13
85140974 CCAATGTTCT
* *
85140984 ATTTCATATATCT
1 ATTTCATATAACC
*
85140997 ATTTCCATATAACT
1 ATTT-CATATAACC
*
85141011 AATTCATATAACC
1 ATTTCATATAACC
* *
85141024 AATTCATAT-ATC
1 ATTTCATATAACC
**
85141036 ATTTTTCATATAAGTG
1 A--TTTCATATAA-CC
*
85141052 A-TTCGTATAACC
1 ATTTCATATAACC
*
85141064 ATTTCATA-AATC
1 ATTTCATATAACC
*
85141076 ATTTTTTATATAACC
1 A--TTTCATATAACC
*
85141091 GATTT-GTATAACC
1 -ATTTCATATAACC
*
85141104 ATTTCATAT-ATC
1 ATTTCATATAACC
85141116 ATTCTTCATATAACC
1 A-T-TTCATATAACC
85141131 GA-TTCATATAACC
1 -ATTTCATATAACC
* *
85141144 ATTTAATAT-ATC
1 ATTTCATATAACC
* *
85141156 ATTCTTGACATAACC
1 A-T-TTCATATAACC
85141171 GA-TTCATATAACC
1 -ATTTCATATAACC
* *
85141184 ATTTCACAT-ATC
1 ATTTCATATAACC
* *
85141196 ATTCTTTACATAACC
1 A-T-TTCATATAACC
*
85141211 GA-TTCAAATAACC
1 -ATTTCATATAACC
85141224 ATTTCATATA
1 ATTTCATATA
85141234 TCATTCTTCG
Statistics
Matches: 180, Mismatches: 31, Indels: 52
0.68 0.12 0.20
Matches are distributed among these distances:
12 24 0.13
13 95 0.53
14 45 0.25
15 10 0.06
16 6 0.03
ACGTcount: A:0.36, C:0.19, G:0.04, T:0.41
Consensus pattern (13 bp):
ATTTCATATAACC
Found at i:85149212 original size:37 final size:37
Alignment explanation
Indices: 85149162--85149240 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
85149152 TTATTACGAA
* * *
85149162 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
85149199 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
85149236 GTCTT
1 GTCTT
85149241 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:85149436 original size:47 final size:47
Alignment explanation
Indices: 85149358--85149651 Score: 453
Period size: 47 Copynumber: 6.2 Consensus size: 47
85149348 CCCTTCGGGA
* * * * * *
85149358 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
85149405 CCTGTCACATATATACACTTTCATATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85149452 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85149501 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
85149548 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85149596 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85149643 CTTATCACA
1 CTTATCACA
85149652 ATTTAGAATT
Statistics
Matches: 226, Mismatches: 18, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
47 136 0.60
48 45 0.20
49 45 0.20
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:85149598 original size:95 final size:94
Alignment explanation
Indices: 85149358--85149651 Score: 453
Period size: 95 Copynumber: 3.1 Consensus size: 94
85149348 CCCTTCGGGA
* * * * * * * *
85149358 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
85149423 TTTCATATTCATCACATCGGCCATTAAGC
66 TTTCACATTCATCACATCGGCCATTAGGC
85149452 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
85149517 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
85149548 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACA
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
85149613 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
85149643 CTTATCACA
1 CTTATCACA
85149652 ATTTAGAATT
Statistics
Matches: 184, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
94 13 0.07
95 88 0.48
96 79 0.43
97 4 0.02
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:85153023 original size:40 final size:40
Alignment explanation
Indices: 85152979--85153094 Score: 115
Period size: 40 Copynumber: 2.9 Consensus size: 40
85152969 GAATACATGT
* * *
85152979 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* * ***
85153019 CACCAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* * * **
85153059 CACTAGCACGAATGTTCTTCAGAATTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGAT
85153095 TTAGTAACTC
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
Found at i:85153128 original size:40 final size:41
Alignment explanation
Indices: 85153084--85153256 Score: 205
Period size: 40 Copynumber: 4.3 Consensus size: 41
85153074 TCTTCAGAAT
*
85153084 TTAGCCCGGATTTAGT-AACTCGCACCAA-TGCCTTCGGGTC
1 TTAGCCCGGATATA-TCAACTCGCACCAATTGCCTTCGGGTC
*
85153124 TTAGCCCGGATATATCAACTTGCA-CAATTGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTCGCACCAATTGCCTTCGGGTC
* * *
85153164 TTATCCCGGATATATCAATTCGCA-CAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTCGCACCAATTGCCTTCGGGTC
* * * *
85153204 TTAGCCCAGATATAATC-ACTAGC-TCAATTGCCTTCGGGAC
1 TTAGCCCGGATAT-ATCAACTCGCACCAATTGCCTTCGGGTC
85153244 TTAGCCCGGATAT
1 TTAGCCCGGATAT
85153257 CATTCAAATG
Statistics
Matches: 116, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
39 4 0.03
40 109 0.94
41 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (41 bp):
TTAGCCCGGATATATCAACTCGCACCAATTGCCTTCGGGTC
Found at i:85153172 original size:80 final size:80
Alignment explanation
Indices: 85152989--85153256 Score: 242
Period size: 80 Copynumber: 3.3 Consensus size: 80
85152979 CACCAGCATG
* * * ** * *
85152989 ATTGCTCTTCGGGACCTAGCCCGGATATAAC-AC-CAGCACGAATGCTCTTCGGAACTTAGTCCG
1 ATTGC-CTTCGGGACTTAGCCCGGATATATCAACTC-GCACAAATGC-CTTCGGGTCTTAGCCCA
**
85153052 GATA-CCTCACTAGCACGA
63 GATATAATCACTAGCAC-A
* * * * * * *
85153070 A-TGTTCTTCAGAATTTAGCCCGGATTTAGT-AACTCGCACCAATGCCTTCGGGTCTTAGCCCGG
1 ATTG-CCTTCGGGACTTAGCCCGGATATA-TCAACTCGCACAAATGCCTTCGGGTCTTAGCCCAG
*
85153133 ATAT-ATCAACTTGCACA
64 ATATAATC-ACTAGCACA
* * *
85153150 ATTGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCAGAT
1 ATTGCCTTCGGGACTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGAT
*
85153215 ATAATCACTAGCTCA
66 ATAATCACTAGCACA
85153230 ATTGCCTTCGGGACTTAGCCCGGATAT
1 ATTGCCTTCGGGACTTAGCCCGGATAT
85153257 CATTCAAATG
Statistics
Matches: 151, Mismatches: 27, Indels: 19
0.77 0.14 0.10
Matches are distributed among these distances:
79 1 0.01
80 125 0.83
81 24 0.16
82 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (80 bp):
ATTGCCTTCGGGACTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGAT
ATAATCACTAGCACA
Found at i:85153583 original size:29 final size:29
Alignment explanation
Indices: 85153544--85153622 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
85153534 CTTAATAATC
*
85153544 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
* *
85153574 AACTCGCACAATTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
85153603 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
85153623 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 3 0.07
29 36 0.86
30 3 0.07
ACGTcount: A:0.29, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:85153652 original size:43 final size:43
Alignment explanation
Indices: 85153604--85154050 Score: 795
Period size: 43 Copynumber: 10.4 Consensus size: 43
85153594 TGCATTTCAA
* *
85153604 GCCCGCACACTTAGTGCCAATCTCACAACCGCGAATACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
85153647 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
* *
85153690 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTGATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
85153733 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
85153776 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
* *
85153819 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTGATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
85153862 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
85153905 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
* *
85153948 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTGATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
85153991 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
85154034 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
85154051 TGAAAACCAA
Statistics
Matches: 389, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 389 1.00
ACGTcount: A:0.27, C:0.35, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:85155965 original size:37 final size:37
Alignment explanation
Indices: 85155915--85155993 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
85155905 TTATTACGAA
* * *
85155915 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
85155952 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
85155989 GTCTT
1 GTCTT
85155994 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:85156189 original size:47 final size:47
Alignment explanation
Indices: 85156111--85156404 Score: 453
Period size: 47 Copynumber: 6.2 Consensus size: 47
85156101 CCCTTCGGGA
* * * * * *
85156111 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
85156158 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85156205 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
85156254 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
85156301 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85156349 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85156396 CTTATCACA
1 CTTATCACA
85156405 ATTTAGAATT
Statistics
Matches: 226, Mismatches: 18, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
47 137 0.61
48 44 0.19
49 45 0.20
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:85156345 original size:95 final size:94
Alignment explanation
Indices: 85156111--85156404 Score: 453
Period size: 95 Copynumber: 3.1 Consensus size: 94
85156101 CCCTTCGGGA
* * * * * * * *
85156111 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
85156176 TTTCACATTCATCACATCGGCCATTAAGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
85156205 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
85156270 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
85156301 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACA
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
85156366 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
85156396 CTTATCACA
1 CTTATCACA
85156405 ATTTAGAATT
Statistics
Matches: 183, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
94 13 0.07
95 87 0.48
96 79 0.43
97 4 0.02
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:85167729 original size:13 final size:13
Alignment explanation
Indices: 85167696--85167730 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
85167686 TATGTGTGAT
*
85167696 TATCCAAGTGTCC
1 TATCCAATTGTCC
85167709 TATCCAATTGTCC
1 TATCCAATTGTCC
85167722 TATCCAATT
1 TATCCAATT
85167731 CCAAATGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.26, C:0.29, G:0.09, T:0.37
Consensus pattern (13 bp):
TATCCAATTGTCC
Found at i:85181694 original size:24 final size:24
Alignment explanation
Indices: 85181632--85181744 Score: 78
Period size: 23 Copynumber: 4.8 Consensus size: 24
85181622 GGACTTACCA
* *
85181632 CAGCTCGTATAAGCTTACCGATATAT
1 CAGCTCGTATAAGCTTA-CTAT-TCT
85181658 CAGCT--TATAAGCTTACTATTCT
1 CAGCTCGTATAAGCTTACTATTCT
*
85181680 CAGCTCGTATGAGCTTACTGA-T-T
1 CAGCTCGTATAAGCTTACT-ATTCT
* *
85181703 CAGTTTGTCA-AAGCTTACTATT-T
1 CAGCTCGT-ATAAGCTTACTATTCT
*
85181726 CAGCTC-AATAGAGCTTACT
1 CAGCTCGTATA-AGCTTACT
85181745 GTCCATCATC
Statistics
Matches: 71, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
21 1 0.01
22 9 0.13
23 32 0.45
24 23 0.32
25 1 0.01
26 5 0.07
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.35
Consensus pattern (24 bp):
CAGCTCGTATAAGCTTACTATTCT
Found at i:85184388 original size:682 final size:682
Alignment explanation
Indices: 85183083--85184442 Score: 2522
Period size: 682 Copynumber: 2.0 Consensus size: 682
85183073 TGAGCTAGCT
*
85183083 AATGGGGGGACTATTTTACAAAATGGTTGAAAGTATAGGGTTTTTCCATGAGAGTATTTATGTTG
1 AATGGGGGGACTATTTTACAAAATGGTTGAAAGTATAGGGTTTTTCCATGAGAGCATTTATGTTG
*
85183148 TTTTTTGAATTTTTATGGAAGAAAATGAGTCTTGTTTGTGTAATAAACAACTTTCGTGAAAGAAG
66 TTTTTTGAATTTTTATGGAAGAAAATGAGTCTTGGTTGTGTAATAAACAACTTTCGTGAAAGAAG
85183213 TTTGCATGAAAACACCTAAAAAGGGTTATTTTGTAAAGTTGTAAAATAAGTTGTAAATGTGTGAA
131 TTTGCATGAAAACACCTAAAAAGGGTTATTTTGTAAAGTTGTAAAATAAGTTGTAAATGTGTGAA
** *
85183278 ATAATTGAAATTTTGAGTTGCTATAGTTATAAAAAGAATTTGGCTAGGCTTGGTAAAGGAGGAAA
196 ATAATTGAAATTTTGAGTTGCTATAGTTATAAAAAGAATTCAGCTAGGCTTAGTAAAGGAGGAAA
* * *
85183343 TTAGATAAAAATCAATTTACGAGCCTAAGGGTAAAATCATAATTTTTGTAAAGTCTAAGGGCAAA
261 TTAGATAAAAATAAATTTACGAGCCTAAAGGCAAAATCATAATTTTTGTAAAGTCTAAGGGCAAA
*
85183408 ACGGTCATTTTGCCAAATTGTGAATTATAGAATGTTTTAATTAATGTAATGATTAAATGAGTGAA
326 ACGATCATTTTGCCAAATTGTGAATTATAGAATGTTTTAATTAATGTAATGATTAAATGAGTGAA
*
85183473 TTTCATCATGTTAGATCAAGAAAATTGAGATTTGAGCTTAAATCGAAAAGTACGAGGTTATGGAC
391 TTTCATCATGCTAGATCAAGAAAATTGAGATTTGAGCTTAAATCGAAAAGTACGAGGTTATGGAC
* *
85183538 TAAAATGGAGTAATTAGCTGAAATTGTATTCGAGGTAAGTCCATGTGACTAATTAAGCATGTTAT
456 TAAAATGGAGTAATTAGCCGAAATTGTATTCGAGGTAAGTCCATGTGACTAAATAAGCATGTTAT
85183603 CCATATTATTGTTAATATACTTGAAATCTATTTTTTCATAATTCTATTGAATTATATGTTGATGG
521 CCATATTATTGTTAATATACTTGAAATCTATTTTTTCATAATTCTATTGAATTATATGTTGATGG
*
85183668 AGTTATGTATGAGAAAGTGATGCCAAGAGTTAATAACACTCATGTGATGATAGAATACATTATAA
586 AGTTATGTATGAGAAAGTGATGCCAAAAGTTAATAACACTCATGTGATGATAGAATACATTATAA
85183733 ATTTGATGGAGTATGATATTCCATTGAAACAA
651 ATTTGATGGAGTATGATATTCCATTGAAACAA
85183765 AATGGGGGGACTATTTTACAAAATGGTTGAAAGTATAGGGTTTTTCCATGAGAGCATTTATGTTG
1 AATGGGGGGACTATTTTACAAAATGGTTGAAAGTATAGGGTTTTTCCATGAGAGCATTTATGTTG
*
85183830 TTTTTTGAATTTTTATGGAAGAAAATGAGTCTTGGTTGTGTAATAAACAACTTTTGTGAAAGAAG
66 TTTTTTGAATTTTTATGGAAGAAAATGAGTCTTGGTTGTGTAATAAACAACTTTCGTGAAAGAAG
85183895 TTTGCATGAAAACACCTAAAAAGGGTTATTTTGTAAAGTTGTAAAATAAGTTGTAAATGTGTGAA
131 TTTGCATGAAAACACCTAAAAAGGGTTATTTTGTAAAGTTGTAAAATAAGTTGTAAATGTGTGAA
85183960 ATAATTGAAATTTTGAGTTGCTATAGTTATAAAAAGAATTCAGCTAGGCTTAGTAAAGGAGGAAA
196 ATAATTGAAATTTTGAGTTGCTATAGTTATAAAAAGAATTCAGCTAGGCTTAGTAAAGGAGGAAA
* * *
85184025 TTAGATGAAAATAAATTTACGAGCCTAAAGGCCAAATCGTAATTTTTGTAAAGTCTAAGGGCAAA
261 TTAGATAAAAATAAATTTACGAGCCTAAAGGCAAAATCATAATTTTTGTAAAGTCTAAGGGCAAA
85184090 ACGATCATTTTGCCAAATTGTGAATTATAGAATGTTTTAATTAATGTAATGATTAAATGAGTGAA
326 ACGATCATTTTGCCAAATTGTGAATTATAGAATGTTTTAATTAATGTAATGATTAAATGAGTGAA
* * *
85184155 TTTCATCATGCTAGATCAAGAAAATTGAGATTTGAGCTTAAATCGGAAAGTATGAGGTTTTGGAC
391 TTTCATCATGCTAGATCAAGAAAATTGAGATTTGAGCTTAAATCGAAAAGTACGAGGTTATGGAC
*
85184220 TAAAATGGAGTAATTAGCCGAAATTGTATTCGAGGTAAGTCCATGTGACTAAATAAGCTTGTTAT
456 TAAAATGGAGTAATTAGCCGAAATTGTATTCGAGGTAAGTCCATGTGACTAAATAAGCATGTTAT
*
85184285 CCATATTATTGTTAATATACTTGAAATCTATTTTTTCATAATTGTATTGAATTATATGTTGATGG
521 CCATATTATTGTTAATATACTTGAAATCTATTTTTTCATAATTCTATTGAATTATATGTTGATGG
85184350 AGTTATGTATGAGAAAGTGATGCCAAAAGTTAATAACACTCATGTGATGATAGAATACATTATAA
586 AGTTATGTATGAGAAAGTGATGCCAAAAGTTAATAACACTCATGTGATGATAGAATACATTATAA
85184415 ATTTGATGGAGTATGATATTCCATTGAA
651 ATTTGATGGAGTATGATATTCCATTGAA
85184443 GCGAATATAA
Statistics
Matches: 656, Mismatches: 22, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
682 656 1.00
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.35
Consensus pattern (682 bp):
AATGGGGGGACTATTTTACAAAATGGTTGAAAGTATAGGGTTTTTCCATGAGAGCATTTATGTTG
TTTTTTGAATTTTTATGGAAGAAAATGAGTCTTGGTTGTGTAATAAACAACTTTCGTGAAAGAAG
TTTGCATGAAAACACCTAAAAAGGGTTATTTTGTAAAGTTGTAAAATAAGTTGTAAATGTGTGAA
ATAATTGAAATTTTGAGTTGCTATAGTTATAAAAAGAATTCAGCTAGGCTTAGTAAAGGAGGAAA
TTAGATAAAAATAAATTTACGAGCCTAAAGGCAAAATCATAATTTTTGTAAAGTCTAAGGGCAAA
ACGATCATTTTGCCAAATTGTGAATTATAGAATGTTTTAATTAATGTAATGATTAAATGAGTGAA
TTTCATCATGCTAGATCAAGAAAATTGAGATTTGAGCTTAAATCGAAAAGTACGAGGTTATGGAC
TAAAATGGAGTAATTAGCCGAAATTGTATTCGAGGTAAGTCCATGTGACTAAATAAGCATGTTAT
CCATATTATTGTTAATATACTTGAAATCTATTTTTTCATAATTCTATTGAATTATATGTTGATGG
AGTTATGTATGAGAAAGTGATGCCAAAAGTTAATAACACTCATGTGATGATAGAATACATTATAA
ATTTGATGGAGTATGATATTCCATTGAAACAA
Found at i:85184675 original size:46 final size:47
Alignment explanation
Indices: 85184603--85184726 Score: 164
Period size: 46 Copynumber: 2.7 Consensus size: 47
85184593 TATATGTGCT
* *
85184603 AGTGCAAGACATGTCTGGGATATGCATCGGCCACAT-A-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-ATGAGATGAGAGCC
* * *
85184649 AGTGTAAGACATGTCTAGGACATGCATCAG-CAATGAGATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAATGAGATGAGAGCC
*
85184695 AGTGTAGGACATGTCTGGGACATGCATCGGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC
85184727 TCGAGATATA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
44 2 0.03
45 3 0.04
46 61 0.91
47 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.21
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCAATGAGATGAGAGCC
Found at i:85184733 original size:46 final size:46
Alignment explanation
Indices: 85184600--85184766 Score: 158
Period size: 46 Copynumber: 3.6 Consensus size: 46
85184590 TGATATATGT
* * * *
85184600 GCTAGTGCAAGACATGTCTGGGATATGCATCGGCCAC-ATAATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGA
* * * *
85184646 GCCAGTGTAAGACATGTCTAGGACATGCATCAGCAAT-GAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC-CTCGAGATGAGA
* * *
85184692 GCTAGTGTAGGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAT-GA-GA
* * *
85184740 GCTATTGTAAGACCTGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
85184767 GTGTCAACTT
Statistics
Matches: 97, Mismatches: 19, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
45 1 0.01
46 70 0.72
47 2 0.02
48 24 0.25
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGA
Found at i:85188171 original size:68 final size:64
Alignment explanation
Indices: 85188061--85188313 Score: 226
Period size: 68 Copynumber: 3.9 Consensus size: 64
85188051 ATACAGATGG
** ** * * *
85188061 TATGTAGCTAGGTCACATGTATGGCGCTGAGTGCACATCATGT-GTACAAGAGAGCTACGAGACA
1 TATGTAGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGCTACGAG--A
85188125 TTA
63 -TA
* *
85188128 TGATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
1 T-ATGTAGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * * *
85188193 TATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGGCACCTTGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCACATGGGTGGTACTAAGTGTA---CACCATGTAGACAAGAGAGCTACGAGA
85188258 TA
63 TA
* *
85188260 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
85188314 CAAAATTATG
Statistics
Matches: 153, Mismatches: 26, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 17 0.11
64 27 0.18
65 3 0.02
66 23 0.15
67 30 0.20
68 51 0.33
69 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:85190899 original size:20 final size:20
Alignment explanation
Indices: 85190857--85190899 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
85190847 CACACGCCCA
*
85190857 TGTGGCTTGGGACACACTTG
1 TGTGGCTTGGGACACACTCG
*
85190877 TGTGGCTTGGGACACGCTCG
1 TGTGGCTTGGGACACACTCG
85190897 TGT
1 TGT
85190900 CTTTAGGCCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.12, C:0.21, G:0.37, T:0.30
Consensus pattern (20 bp):
TGTGGCTTGGGACACACTCG
Found at i:85192308 original size:42 final size:42
Alignment explanation
Indices: 85192180--85192342 Score: 112
Period size: 42 Copynumber: 3.9 Consensus size: 42
85192170 ATCTCACACT
* ** * *
85192180 GATGCCATATCCCAGATATGGTCTTATAC-AAATTATCGTTTC
1 GATGCCATAACCCAGACGTGGTCTTACACGAAA-TCTCGTTTC
* * ** * * ** ***
85192222 GACGTCATGTCCCAAACGTGGTCTTACATGGGATCTCACATC
1 GATGCCATAACCCAGACGTGGTCTTACACGAAATCTCGTTTC
** * *
85192264 GATGCCATAACCCAGATTTGGTCTTATACGAATTCTCGTTTC
1 GATGCCATAACCCAGACGTGGTCTTACACGAAATCTCGTTTC
**
85192306 GATGCCATGTCCCAGACGTGGTCTTACACGAAATCTC
1 GATGCCATAACCCAGACGTGGTCTTACACGAAATCTC
85192343 ATATCAACAC
Statistics
Matches: 85, Mismatches: 35, Indels: 2
0.70 0.29 0.02
Matches are distributed among these distances:
42 84 0.99
43 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (42 bp):
GATGCCATAACCCAGACGTGGTCTTACACGAAATCTCGTTTC
Found at i:85192370 original size:84 final size:84
Alignment explanation
Indices: 85192139--85192373 Score: 292
Period size: 84 Copynumber: 2.8 Consensus size: 84
85192129 TAAGATGCCA
* *
85192139 ATGCCATGTCCTAGATGTGGTCTTACATGGAATCTCACA-CTGATGCCATATCCCAGATATGGTC
1 ATGCCATGTCCCAGACGTGGTCTTACATGGAATCTCACATC-GATGCCATATCCCAGATATGGTC
85192203 TTATACAAATTATCGTTTCG
65 TTATACAAATTATCGTTTCG
* * * * * *
85192223 ACGTCATGTCCCAAACGTGGTCTTACATGGGATCTCACATCGATGCCATAACCCAGATTTGGTCT
1 ATGCCATGTCCCAGACGTGGTCTTACATGGAATCTCACATCGATGCCATATCCCAGATATGGTCT
* *
85192288 TATACGAATTCTCGTTTCG
66 TATACAAATTATCGTTTCG
* * * * ** * *
85192307 ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCATATCAACACCATATCCTAGGTATGGTCT
1 ATGCCATGTCCCAGACGTGGTCTTACATGGAATCTCACATCGATGCCATATCCCAGATATGGTCT
85192372 TA
66 TA
85192374 CATGATAACT
Statistics
Matches: 126, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
84 125 0.99
85 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (84 bp):
ATGCCATGTCCCAGACGTGGTCTTACATGGAATCTCACATCGATGCCATATCCCAGATATGGTCT
TATACAAATTATCGTTTCG
Found at i:85195572 original size:40 final size:40
Alignment explanation
Indices: 85195467--85195682 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
85195457 CAGATGATAA
* *
85195467 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
85195507 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
85195546 CCGGGCTAAGTCCCGGAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
85195586 CTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
85195626 CCGGGCT-AGTCCCGAAGACATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
85195665 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
85195683 TACTTGGTTT
Statistics
Matches: 156, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 5 0.03
39 71 0.46
40 80 0.51
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:85195637 original size:79 final size:79
Alignment explanation
Indices: 85195463--85195682 Score: 286
Period size: 79 Copynumber: 2.8 Consensus size: 79
85195453 TATTCAGATG
* * *
85195463 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T-CGGGTTAAGTCCCGAAGGC
85195526 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* *
85195542 ATATCCGGGCTAAGTCCCGGAGGCATTTGTGCGAGTTACTATATCTGGGTTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC-GGGTTAAGTCCCGAAGGCA
85195607 TTTGTGCGAGTTACT
65 TTTGTGCGAGTTACT
* * * * *
85195622 ATAACCGGGCT-AGTCCCGAAGACATTTGAGTGAG-TAGCTATATCCGGTTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCGGGTTAAGTCCCGAAGG
85195683 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
78 18 0.14
79 71 0.57
80 36 0.29
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCGGGTTAAGTCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:85203627 original size:80 final size:80
Alignment explanation
Indices: 85203455--85203714 Score: 368
Period size: 79 Copynumber: 3.3 Consensus size: 80
85203445 TATTCGGATG
* *
85203455 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGC
85203518 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* *
85203534 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
85203599 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* * *
85203614 ATAACCGGGCTAAGTCCCGAAGGCATTTTTGCGAGTTACTATAACCGGGCT-AGTCCCGAAGACA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
*
85203678 TTTGAGCGAG-TAGCT
66 TTTGTGCGAGTTA-CT
* * *
85203693 ATATCC-GGTTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
85203715 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
78 16 0.10
79 76 0.46
80 73 0.44
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:85203674 original size:119 final size:119
Alignment explanation
Indices: 85203459--85203714 Score: 367
Period size: 119 Copynumber: 2.2 Consensus size: 119
85203449 CGGATGATAA
* *
85203459 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGT
* * * *
85203524 GCGAGTTACTATATCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTA-CTATAT
66 GCGAGTTACTATAACCGGGCTAAGTCCCGAAGACATTTGAGCGAG-TAGCTATAT
*
85203578 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGCATTT
*
85203642 TTGCGAGTTACTATAACCGGGCT-AGTCCCGAAGACATTTGAGCGAGTAGCTATAT
64 GTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGACATTTGAGCGAGTAGCTATAT
* *
85203697 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
85203715 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
118 18 0.15
119 72 0.58
120 34 0.27
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGT
GCGAGTTACTATAACCGGGCTAAGTCCCGAAGACATTTGAGCGAGTAGCTATAT
Found at i:85203710 original size:39 final size:40
Alignment explanation
Indices: 85203459--85203714 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
85203449 CGGATGATAA
* *
85203459 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
85203499 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
85203538 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
85203578 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
85203618 CCGGGCTAAGTCCCGAAGGCATTTTTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
85203658 CCGGGCT-AGTCCCGAAGACATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
85203697 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
85203715 TACTTGGTTT
Statistics
Matches: 199, Mismatches: 13, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
38 5 0.03
39 71 0.36
40 123 0.62
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:85211201 original size:42 final size:42
Alignment explanation
Indices: 85211155--85211407 Score: 134
Period size: 42 Copynumber: 5.9 Consensus size: 42
85211145 TTACATGCGA
*
85211155 TCTCACATCGATGCCATATCCCAAATATGGTCTTATATGAAT
1 TCTCACATCGATGCCATATCCCAGATATGGTCTTATATGAAT
** * * * *
85211197 TCTCATTTCGACT-CCATGTCCCAGACATGGTCTTACATGGGA-
1 TCTCACATCGA-TGCCATATCCCAGATATGGTCTTATAT-GAAT
* * * *
85211239 TCTCACATCAATGTCATATCTCAGATATGGTCTTATAAGAAT
1 TCTCACATCGATGCCATATCCCAGATATGGTCTTATATGAAT
**** * * * ** * * ** *
85211281 TCTTGTTTCGATGCAATGTCGCAGACGTAGTCTTACACAAAA
1 TCTCACATCGATGCCATATCCCAGATATGGTCTTATATGAAT
* * * *
85211323 TCTCATATCAATGCCATATCTCAGATATGGTCTTACATG-AT
1 TCTCACATCGATGCCATATCCCAGATATGGTCTTATATGAAT
*
85211364 GACTCATACTGATGCCGATGCCATATCCCAGATATGGTCTTATA
1 -TCTC--AC--AT--CGATGCCATATCCCAGATATGGTCTTATA
85211408 CGGGATCTCA
Statistics
Matches: 149, Mismatches: 51, Indels: 16
0.69 0.24 0.07
Matches are distributed among these distances:
41 4 0.03
42 113 0.76
43 3 0.02
44 1 0.01
46 2 0.01
48 26 0.17
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.33
Consensus pattern (42 bp):
TCTCACATCGATGCCATATCCCAGATATGGTCTTATATGAAT
Found at i:85211267 original size:84 final size:84
Alignment explanation
Indices: 85211123--85211362 Score: 284
Period size: 84 Copynumber: 2.9 Consensus size: 84
85211113 TAAGATGCCA
* * * * * *
85211123 ATGCCATGTCCCAAACGTGGCCTTACATGCGATCTCACATCGATGCCATATCCCAAATATGGTCT
1 ATGCCATGTCCCAGACGTGGTCTTACATGAGATCTCACATCAATGCCATATCTCAGATATGGTCT
85211188 TATATGAATTCTCATTTCG
66 TATATGAATTCTCATTTCG
* * *
85211207 ACT-CCATGTCCCAGACATGGTCTTACATGGGATCTCACATCAATGTCATATCTCAGATATGGTC
1 A-TGCCATGTCCCAGACGTGGTCTTACATGAGATCTCACATCAATGCCATATCTCAGATATGGTC
* **
85211271 TTATAAGAATTCTTGTTTCG
65 TTATATGAATTCTCATTTCG
* * * ** * *
85211291 ATGCAATGTCGCAGACGTAGTCTTACACAAAATCTCATATCAATGCCATATCTCAGATATGGTCT
1 ATGCCATGTCCCAGACGTGGTCTTACATGAGATCTCACATCAATGCCATATCTCAGATATGGTCT
*
85211356 TACATGA
66 TATATGA
85211363 TGACTCATAC
Statistics
Matches: 131, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
83 1 0.01
84 129 0.98
85 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (84 bp):
ATGCCATGTCCCAGACGTGGTCTTACATGAGATCTCACATCAATGCCATATCTCAGATATGGTCT
TATATGAATTCTCATTTCG
Found at i:85214130 original size:40 final size:38
Alignment explanation
Indices: 85214071--85214204 Score: 114
Period size: 40 Copynumber: 3.5 Consensus size: 38
85214061 TTTTTCAGTC
** * *
85214071 TATCTGACTAGTTCGGGGCACACCATTATATCTATCAATT
1 TATCTGACTAGCACTGGGCACA-CATT-TATCTGTCAATT
*
85214111 TATCTGACTAGCACTGGGCACA-ACTT-TC-GTCAATT
1 TATCTGACTAGCACTGGGCACACATTTATCTGTCAATT
* * *
85214146 TATCTGACTAGTGA-TGGGCACAACATTTTATTTGTCAGTT
1 TATCTGACTAG-CACTGGGCAC-ACA-TTTATCTGTCAATT
*
85214186 TATCTGACTAGCGCTGGGC
1 TATCTGACTAGCACTGGGC
85214205 GCAAATTTTC
Statistics
Matches: 76, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
35 24 0.32
36 4 0.05
37 2 0.03
38 4 0.05
39 1 0.01
40 41 0.54
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (38 bp):
TATCTGACTAGCACTGGGCACACATTTATCTGTCAATT
Found at i:85214154 original size:75 final size:76
Alignment explanation
Indices: 85214071--85214355 Score: 200
Period size: 79 Copynumber: 3.7 Consensus size: 76
85214061 TTTTTCAGTC
*
85214071 TATCTGACTAGTTCGGGGCACACCATTATATCTATCAATTTATCTGACTAGCACTGGGCAC-AAC
1 TATCTGACTAGTTCTGGGCACACCATTATATCTATCAATTTATCTGACTAGCACTGGGCACAAAC
*
85214135 TTTCGTCAATT
66 TTTCATCAATT
** * * * * * * * *
85214146 TATCTGACTAGTGATGGGCACAACATTTTATTTGTCAGTTTATCTGACTAGCGCTGGGCGCAAAT
1 TATCTGACTAGTTCTGGGCACACCATTATATCTATCAATTTATCTGACTAGCACTGGGCACAAAC
*
85214211 TTTCATCAGTT
66 TTTCATCAATT
* * * * * * * ***
85214222 TATCTAACTA-TTGCTGGGCACACTCTCTATATATTTGTTAGTTTCTCTGACTAATGCTGGGCAC
1 TATCTGACTAGTT-CTGGGCACAC-C-AT-TATATCTATCAATTTATCTGACTAGCACTGGGCAC
* *
85214286 AAATCTTT-GTCAGTT
62 AAA-CTTTCATCAATT
* * **
85214301 TATCTAACTAGTGT-TAGGCACACTCCATATATATCTATCGGTTTATCTGACTAGC
1 TATCTGACTAGT-TCTGGGCACA--CCAT-TATATCTATCAATTTATCTGACTAGC
85214356 GTTGGTTTCA
Statistics
Matches: 165, Mismatches: 35, Indels: 16
0.76 0.16 0.07
Matches are distributed among these distances:
75 52 0.32
76 28 0.17
77 1 0.01
78 1 0.01
79 76 0.46
80 5 0.03
81 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (76 bp):
TATCTGACTAGTTCTGGGCACACCATTATATCTATCAATTTATCTGACTAGCACTGGGCACAAAC
TTTCATCAATT
Found at i:85214272 original size:79 final size:79
Alignment explanation
Indices: 85214109--85214353 Score: 225
Period size: 79 Copynumber: 3.2 Consensus size: 79
85214099 TATCTATCAA
* * * * * * * *
85214109 TTTATCTGACTAGCACTGGGCAC-AA-CTTTCGTCAATTTATCTGACTAGTGATGGGCACA--AC
1 TTTATCTGACTAACGCTGGGCACAAATCTTT-ATCAGTTTATCTAACTAGTGCTAGGCACACTCC
*
85214170 AT-TTTATTTGTCAG
65 ATATATATTTGTCAG
* * * *
85214184 TTTATCTGACTAGCGCTGGGCGCAAAT-TTTCATCAGTTTATCTAACTATTGCTGGGCACACTCT
1 TTTATCTGACTAACGCTGGGCACAAATCTTT-ATCAGTTTATCTAACTAGTGCTAGGCACACTC-
*
85214248 C-TATATATTTGTTAG
64 CATATATATTTGTCAG
* * * *
85214263 TTTCTCTGACTAATGCTGGGCACAAATCTTTGTCAGTTTATCTAACTAGTGTTAGGCACACTCCA
1 TTTATCTGACTAACGCTGGGCACAAATCTTTATCAGTTTATCTAACTAGTGCTAGGCACACTCCA
* * *
85214328 TATATATCTATCGG
66 TATATATTTGTCAG
85214342 TTTATCTGACTA
1 TTTATCTGACTA
85214354 GCGTTGGTTT
Statistics
Matches: 139, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
75 21 0.15
76 30 0.22
78 2 0.01
79 83 0.60
80 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.38
Consensus pattern (79 bp):
TTTATCTGACTAACGCTGGGCACAAATCTTTATCAGTTTATCTAACTAGTGCTAGGCACACTCCA
TATATATTTGTCAG
Found at i:85220583 original size:30 final size:30
Alignment explanation
Indices: 85220549--85220614 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
85220539 GACAAATTAC
85220549 GAAAT-AAAGATAACAAGAAAACCA-AATAAA
1 GAAATCAAAGAT-ACAA-AAAACCAGAATAAA
* * *
85220579 GAAATCCAAGATAGAAAAACCCAGAATAAA
1 GAAATCAAAGATACAAAAAACCAGAATAAA
85220609 GAAATC
1 GAAATC
85220615 CAGAATAAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
29 6 0.19
30 20 0.65
31 5 0.16
ACGTcount: A:0.64, C:0.14, G:0.12, T:0.11
Consensus pattern (30 bp):
GAAATCAAAGATACAAAAAACCAGAATAAA
Found at i:85220619 original size:15 final size:14
Alignment explanation
Indices: 85220563--85220632 Score: 70
Period size: 15 Copynumber: 4.8 Consensus size: 14
85220553 TAAAGATAAC
*
85220563 AAGAAAACCAAATA
1 AAGAAATCCAAATA
85220577 AAGAAATCCAAGATA
1 AAGAAATCCAA-ATA
*
85220592 GAA-AAACCCAGAATA
1 -AAGAAATCCA-AATA
85220607 AAGAAATCCAGAATA
1 AAGAAATCCA-AATA
*
85220622 AAGAAACCCAA
1 AAGAAATCCAA
85220633 GATACGATAC
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
14 13 0.27
15 32 0.67
16 3 0.06
ACGTcount: A:0.63, C:0.17, G:0.11, T:0.09
Consensus pattern (14 bp):
AAGAAATCCAAATA
Found at i:85220629 original size:30 final size:30
Alignment explanation
Indices: 85220563--85220632 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
85220553 TAAAGATAAC
*
85220563 AAGAAAACCAAATAAAGAAATCCAAGATAG
1 AAGAAACCCAAATAAAGAAATCCAAGATAG
85220593 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCA-AATAAAGAAATCCAAG-ATAG
85220622 AAGAAACCCAA
1 AAGAAACCCAA
85220633 GATACGATAC
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
29 11 0.31
30 25 0.69
ACGTcount: A:0.63, C:0.17, G:0.11, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAAATAAAGAAATCCAAGATAG
Found at i:85227042 original size:21 final size:22
Alignment explanation
Indices: 85226990--85227043 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
85226980 TGCAGGGCTC
**
85226990 ACACGCCTGTGTGGTCCAAGGG
1 ACACGCCTGTGTGACCCAAGGG
* *
85227012 ACAAGCCTGTGTGACCCTAGGG
1 ACACGCCTGTGTGACCCAAGGG
85227034 -CACGCCTGTG
1 ACACGCCTGTG
85227044 CTGGAGGCCG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 9 0.33
22 18 0.67
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.19
Consensus pattern (22 bp):
ACACGCCTGTGTGACCCAAGGG
Found at i:85244353 original size:46 final size:46
Alignment explanation
Indices: 85244300--85244475 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
85244290 TATTTGGGCA
85244300 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*
85244346 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * * * *
85244392 TGCGAACGCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
85244439 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85244476 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 73 0.66
47 28 0.25
48 2 0.02
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:85245845 original size:27 final size:27
Alignment explanation
Indices: 85245805--85245916 Score: 102
Period size: 27 Copynumber: 4.1 Consensus size: 27
85245795 AGGAAGCGTC
*
85245805 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
85245832 CTGGTGGCTCTGCCACAAATT-TATGTT
1 CTGGTGGCTCTGCCAC-AATTATCTGAT
* * *
85245859 CTAGAGGCTCTGCCACTATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
** * *
85245887 CTGGTGATTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
85245913 CTGG
1 CTGG
85245917 CAGCCATGCT
Statistics
Matches: 68, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
26 8 0.12
27 44 0.65
28 16 0.24
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:85252230 original size:22 final size:22
Alignment explanation
Indices: 85252191--85252233 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
85252181 ATCACTCTTC
* *
85252191 CTCTCCTTTTATTTTTCTTTTT
1 CTCTCCATTTATTATTCTTTTT
*
85252213 CTCTCCATTTGTTATTCTTTT
1 CTCTCCATTTATTATTCTTTT
85252234 CTTCTTCTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.23, G:0.02, T:0.67
Consensus pattern (22 bp):
CTCTCCATTTATTATTCTTTTT
Found at i:85253483 original size:27 final size:27
Alignment explanation
Indices: 85253443--85253554 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
85253433 AGGAAGCGTC
*
85253443 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
85253470 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
85253497 CTGGTGGCTCTGACACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
85253525 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
85253551 CTGG
1 CTGG
85253555 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.65
28 18 0.24
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:85253549 original size:54 final size:54
Alignment explanation
Indices: 85253443--85253554 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
85253433 AGGAAGCGTC
* * *
85253443 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGACACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
85253497 CTGGTGGCTCTGACACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGACACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
85253551 CTGG
1 CTGG
85253555 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGACACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:85257139 original size:40 final size:40
Alignment explanation
Indices: 85256791--85257139 Score: 572
Period size: 40 Copynumber: 8.7 Consensus size: 40
85256781 GCAAACACAT
* * * *
85256791 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
* *
85256831 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
* *
85256871 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
* *
85256911 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
* *
85256951 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
* *
85256991 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
85257031 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
85257071 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
85257111 TTGCCTTCGGGTCTTAGCCCGGATATATT
1 TTGCCTTCGGGTCTTAGCCCGGATATATT
85257140 CCAATGCTCA
Statistics
Matches: 287, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 287 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
Found at i:85261676 original size:43 final size:43
Alignment explanation
Indices: 85261610--85261706 Score: 176
Period size: 43 Copynumber: 2.3 Consensus size: 43
85261600 CATAACCACC
*
85261610 ACCAACTCAATAAGCACAGATGTCACATATATCATGAACTCAG
1 ACCAACTCAATAAGCACAAATGTCACATATATCATGAACTCAG
85261653 ACCAACTCAATAAGCACAAATGTCACATATATCATGAACTCAG
1 ACCAACTCAATAAGCACAAATGTCACATATATCATGAACTCAG
*
85261696 ACCAAATCAAT
1 ACCAACTCAAT
85261707 GAGCTTAGAT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.44, C:0.26, G:0.09, T:0.21
Consensus pattern (43 bp):
ACCAACTCAATAAGCACAAATGTCACATATATCATGAACTCAG
Found at i:85275667 original size:21 final size:21
Alignment explanation
Indices: 85275643--85275683 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
85275633 TCATCAGATC
*
85275643 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
85275664 TACAGGTTGAGGAATCGGGG
1 TACACCTTGAGGAATCGGGG
85275684 AAGGTGGGGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.17, G:0.41, T:0.20
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:85276832 original size:18 final size:18
Alignment explanation
Indices: 85276809--85276845 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
85276799 TAACCATATC
85276809 ATATGATCATTTACACAA
1 ATATGATCATTTACACAA
*
85276827 ATATGATCATTTACTCAA
1 ATATGATCATTTACACAA
85276845 A
1 A
85276846 GTGAGTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.35
Consensus pattern (18 bp):
ATATGATCATTTACACAA
Found at i:85283494 original size:39 final size:39
Alignment explanation
Indices: 85283447--85283578 Score: 192
Period size: 39 Copynumber: 3.4 Consensus size: 39
85283437 TATATGAGAT
* *
85283447 TGGAAATATATCCAGACATGAGGTCCGCATGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAAGCTATATGC
* *
85283486 TGGAAATATATTCGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAAGCTATATGC
* * *
85283525 TGGAAATATATCCGGACTTGATGTCCGCAAGCTACATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAAGCTATATGC
*
85283564 TGGAAAAATATCCGG
1 TGGAAATATATCCGG
85283579 GTTAAAGACC
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 84 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (39 bp):
TGGAAATATATCCGGACATGAGGTCCGCAAGCTATATGC
Found at i:85283592 original size:78 final size:78
Alignment explanation
Indices: 85283447--85283596 Score: 176
Period size: 78 Copynumber: 1.9 Consensus size: 78
85283437 TATATGAGAT
* * * * * **
85283447 TGGAAATATATCCAGACATGAGGTCCGCATGCTATATGCTGGAAATATATTCGGACATGAGGTCC
1 TGGAAATATATCCAGACATGAGGTCCGCAAGCTACATGCTGGAAAAATATCCGGACATAAGACCC
85283512 GCAGGCTATATGC
66 GCAGGCTATATGC
* * * **
85283525 TGGAAATATATCCGGACTTGATGTCCGCAAGCTACATGCTGGAAAAATATCCGG-GTTAAAGACC
1 TGGAAATATATCCAGACATGAGGTCCGCAAGCTACATGCTGGAAAAATATCCGGACAT-AAGACC
85283589 CGCAGGCT
65 CGCAGGCT
85283597 TACACTAGTA
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
77 1 0.02
78 58 0.98
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (78 bp):
TGGAAATATATCCAGACATGAGGTCCGCAAGCTACATGCTGGAAAAATATCCGGACATAAGACCC
GCAGGCTATATGC
Found at i:85293035 original size:40 final size:41
Alignment explanation
Indices: 85292976--85293127 Score: 211
Period size: 40 Copynumber: 3.8 Consensus size: 41
85292966 CATTTGAATG
* *
85292976 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
85293016 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* *
85293056 ATATCCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
85293096 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
85293128 TTGTGGTTAT
Statistics
Matches: 101, Mismatches: 9, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
40 98 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:85293139 original size:80 final size:80
Alignment explanation
Indices: 85292976--85293147 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 80
85292966 CATTTGAATG
* * * * *
85292976 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
85293041 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
85293056 ATATCCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
85293120 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
85293136 ATATCC-GGCTAA
1 ATATCCGGGCTAA
85293148 ATTCCGAAGA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 6 0.08
80 71 0.90
81 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:85301192 original size:40 final size:40
Alignment explanation
Indices: 85301049--85301193 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
85301039 ATGATATCCA
* * * * *
85301049 GGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATACCCG
* *
85301089 GGCTAAGACCCAAAGGCATTTGTGCGAGTTGATATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATACCCG
*
85301129 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATACCCG
* *
85301169 GGTTAAGACCCGAAGGCAATTGTGC
1 GGCTAAGACCCGAAGGCATTTGTGC
85301194 TTGTGGTTAT
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 91 0.97
41 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATACCCG
Found at i:85301205 original size:80 final size:79
Alignment explanation
Indices: 85301042--85301213 Score: 193
Period size: 80 Copynumber: 2.2 Consensus size: 79
85301032 CATGTGAATG
* * * * *
85301042 ATATCCAGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCAAAGGCA
1 ATATCC-GGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCAAAGGCA
* *
85301107 TTTGTGCGAGTTGAT
65 ATTGTGCGAGTGGAT
* * *
85301122 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCC-GGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCAAAGGC
** *
85301186 AATTGTGCTTGTGGTT
64 AATTGTGCGAGTGGAT
85301202 ATATCCGGCTAA
1 ATATCCGGCTAA
85301214 ATTCCGAAGA
Statistics
Matches: 77, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 6 0.08
80 69 0.90
81 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
ATATCCGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCAAAGGCAA
TTGTGCGAGTGGAT
Found at i:85302903 original size:39 final size:39
Alignment explanation
Indices: 85302812--85302904 Score: 123
Period size: 39 Copynumber: 2.4 Consensus size: 39
85302802 TATATGAGAT
* *
85302812 TGGAAATATATCCAGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTACATGC
* * *
85302851 TGGAAATATATCCGGACTTGAGGTTCGCAGGCTACGTGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTACATGC
* *
85302890 TTGAAAAATATCCGG
1 TGGAAATATATCCGG
85302905 GTTAAAGACC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (39 bp):
TGGAAATATATCCGGACATGAGGTCCGCAGGCTACATGC
Found at i:85305188 original size:50 final size:51
Alignment explanation
Indices: 85305111--85305239 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
85305101 GACCATGGCA
* *
85305111 ACAAGTGATAAATGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-AG
*
85305162 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAAAG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAAG
* * *
85305212 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
85305240 CTGATCAGTG
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 43 0.61
51 27 0.39
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAAG
Found at i:85305253 original size:31 final size:31
Alignment explanation
Indices: 85305215--85305363 Score: 217
Period size: 31 Copynumber: 4.8 Consensus size: 31
85305205 ACAAAAGACA
*
85305215 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
85305246 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
85305277 AGTGAAAAGTAGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * *
85305308 AATGAAAAATGGTAGCTCCGGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
85305339 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
85305364 AAGTGACAAG
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:85305506 original size:46 final size:47
Alignment explanation
Indices: 85305387--85305511 Score: 162
Period size: 47 Copynumber: 2.7 Consensus size: 47
85305377 CAAGTGATTT
* * *
85305387 CTGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * *
85305434 CTGTATAAGACCATATCTAGGATATGGCATCAGTGAGATATGTGATT
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * *
85305481 C-GTGTAAGACCATAGCTGGGCTATGGCATCA
1 CTGTATAAGACCATATCTGGGATATGGCATCA
85305512 TTACGTGAAG
Statistics
Matches: 68, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
46 26 0.38
47 42 0.62
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (47 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
Found at i:85305547 original size:42 final size:42
Alignment explanation
Indices: 85305482--85305595 Score: 192
Period size: 43 Copynumber: 2.7 Consensus size: 42
85305472 TATGTGATTC
* **
85305482 GTGTAAGACCATAGCTGGGCTATGGCATCATTACGTGAAGAT
1 GTGTAAGACCATAGTTGAACTATGGCATCATTACGTGAAGAT
85305524 GTGTAAGACCATAGTTGAACTATGGCCATCATTACGTGAAGAT
1 GTGTAAGACCATAGTTGAACTATGG-CATCATTACGTGAAGAT
85305567 GTGTAAGACCATAGTTGAACTATGGCATC
1 GTGTAAGACCATAGTTGAACTATGGCATC
85305596 GAGAAAACGA
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
42 26 0.38
43 42 0.62
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATAGTTGAACTATGGCATCATTACGTGAAGAT
Found at i:85311963 original size:47 final size:48
Alignment explanation
Indices: 85311754--85312074 Score: 549
Period size: 47 Copynumber: 6.7 Consensus size: 48
85311744 GCCCTTCGGG
*
85311754 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
85311804 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
*
85311853 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
85311902 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAC
*
85311949 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAC
85311996 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAC
*
85312043 ACTTTCACATTCACCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
85312075 ATACTATCAT
Statistics
Matches: 265, Mismatches: 6, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
47 131 0.49
49 130 0.49
50 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAC
Found at i:85312012 original size:25 final size:25
Alignment explanation
Indices: 85311936--85312014 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
85311926 ATTAGGCCTT
85311936 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
85311961 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
85311983 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
85312008 ATCACAT
1 ATCACAT
85312015 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:85315719 original size:80 final size:80
Alignment explanation
Indices: 85315584--85315964 Score: 462
Period size: 80 Copynumber: 4.8 Consensus size: 80
85315574 AGCATGATTA
* * * * * * ** *
85315584 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
85315649 TCACTAGCACGAATG
66 TCACTAGCACGAATG
*
85315664 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
*
85315729 TCACTAGCATGAATG
66 TCACTAGCACGAATG
* * *
85315744 CTCTTCGAAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
85315809 TCGCTAGCATGAATG
66 TCACTAGCACGAATG
* * * *
85315824 CTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
85315889 GTAACTCGCACCAATG
66 -TCACTAGCACGAATG
* * ** *
85315905 C-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGAACTTAGCCCGGATA-CATCAC-TAGCACGAATGCTCTTCGGGACTTAGCCCGGA
85315965 CATCATTCGA
Statistics
Matches: 264, Mismatches: 34, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
80 241 0.91
81 18 0.07
82 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
TCACTAGCACGAATG
Found at i:85315801 original size:120 final size:120
Alignment explanation
Indices: 85315588--85315964 Score: 445
Period size: 120 Copynumber: 3.1 Consensus size: 120
85315578 TGATTACTCT
* * * * * ** * *
85315588 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATATCAC
1 TCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
85315653 TAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
66 TAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
**
85315708 TCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGAAACTTAGCCCGGATACATCAC
1 TCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
* * * * *
85315773 TAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATGCTCT
66 TAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
* * ** *
85315828 TCGGGACTTAGCCCGGATACATCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAA
1 TCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA-TCA
* * * * ** * *
85315893 CTCGCACCAATGC-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAGC-CT
65 CTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA-CATCAC-TAGCACGAATGCTCC
85315948 TCGGGACTTAGCCCGGA
1 TCGGGACTTAGCCCGGA
85315965 CATCATTCGA
Statistics
Matches: 220, Mismatches: 34, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
120 196 0.89
121 19 0.09
122 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (120 bp):
TCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCAC
TAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
Found at i:85315911 original size:40 final size:40
Alignment explanation
Indices: 85315569--85315885 Score: 436
Period size: 40 Copynumber: 7.9 Consensus size: 40
85315559 CGAATACACG
* * * * *
85315569 TCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * ** * *
85315609 ACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
85315649 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
85315689 TCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
**
85315729 TCACTAGCATGAATGCTCTTCGAAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
85315769 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
85315809 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
85315849 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
85315886 TTAGTAACTC
Statistics
Matches: 249, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 249 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:85315918 original size:40 final size:40
Alignment explanation
Indices: 85315586--85315964 Score: 198
Period size: 40 Copynumber: 9.5 Consensus size: 40
85315576 CATGATTACT
* *
85315586 CTTCGGGACCTAGCCCGGATATA--ACAC-CAGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTA-ACTTAGCAC-AATGC
* ** * *
85315625 TCTTTGGGGTTTAGCACGGATATA-TCAC-TAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTTAGCAC-AATGC
* * *
85315665 TCTTCGGAACTTAGCCCGGATACA-TCAC-TAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTTAGCAC-AATGC
* * *
85315705 TCCTCGGGACTTAGCCCGGATATA-TCAC-TAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTTAGCA-CAATGC
** * * *
85315745 TCTTCGAAACTTAGCCCGGATACA-TCAC-TAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTTAGCA-CAATGC
* ** *
85315785 TCTTCGGGACTTAGCCCGGATACA-TCGC-TAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTTAGCA-CAATGC
* ** *
85315825 TCTTCGGGACTTAGCCCGGATACA-TCGC-TAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTTAGCA-CAATGC
* *
85315865 TCTTCGGGACTTAGCCCGGATTTAGTAAC-TCGCACCAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTTAGCA-CAATGC
* * * *
85315906 CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTAACTTAGCACAATGC
85315946 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
85315965 CATCATTCGA
Statistics
Matches: 295, Mismatches: 38, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
39 3 0.01
40 274 0.93
41 18 0.06
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTTAGCACAATGC
Found at i:85316309 original size:29 final size:29
Alignment explanation
Indices: 85316270--85316348 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
85316260 CTTAATAATC
*
85316270 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
85316300 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
85316329 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
85316349 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:85316391 original size:43 final size:43
Alignment explanation
Indices: 85316330--85316475 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
85316320 TGCATTTCAA
85316330 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
85316373 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
85316416 GCCCGCACACTTAGTGCCAACCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
85316459 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
85316476 TGAAAACCAA
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 102 1.00
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:85318391 original size:37 final size:37
Alignment explanation
Indices: 85318341--85318417 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
85318331 TTATTACGAA
* * *
85318341 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
85318378 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
85318415 GTC
1 GTC
85318418 ATTAGAGCTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:85318648 original size:47 final size:47
Alignment explanation
Indices: 85318537--85318900 Score: 647
Period size: 47 Copynumber: 7.7 Consensus size: 47
85318527 GCCCTTCGGG
*
85318537 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
85318587 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
85318634 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
85318681 ACTTTCACATTCATCACATCGGCCATTAGGCCATGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
85318728 ACTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
85318775 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
85318822 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
85318869 ACTTTCACATTCACCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
85318901 ATACTATCAT
Statistics
Matches: 304, Mismatches: 10, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
47 266 0.88
49 34 0.11
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:85318838 original size:25 final size:25
Alignment explanation
Indices: 85318762--85318840 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
85318752 ATTAGGTCTT
85318762 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
85318787 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
85318809 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
85318834 ATCACAT
1 ATCACAT
85318841 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:85321399 original size:28 final size:28
Alignment explanation
Indices: 85321339--85321491 Score: 265
Period size: 28 Copynumber: 5.5 Consensus size: 28
85321329 TAAATTGTAC
85321339 AGCACTAAGTGTGCGAGTTT-ATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
85321366 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
85321394 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
85321422 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
85321450 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
85321477 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85321492 GACTTAATAT
Statistics
Matches: 123, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
27 44 0.36
28 79 0.64
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:85321420 original size:56 final size:56
Alignment explanation
Indices: 85321314--85321491 Score: 270
Period size: 56 Copynumber: 3.2 Consensus size: 56
85321304 GAGATTGGCG
* * * *
85321314 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTT-ATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
85321370 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
85321426 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
85321481 CTGAGTGTGCG
1 CTAAGTGTGCG
85321492 GACTTAATAT
Statistics
Matches: 113, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
55 47 0.42
56 66 0.58
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:85321480 original size:83 final size:83
Alignment explanation
Indices: 85321339--85321491 Score: 263
Period size: 83 Copynumber: 1.8 Consensus size: 83
85321329 TAAATTGTAC
* *
85321339 AGCACTAAGTGTGCGAGTTTATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGT
85321404 GTGCGAGTTTGATTATGT
66 GTGCGAGTTTGATTATGT
*
85321422 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAG
1 AGCACTAAGTGTGCGAGTTT-ATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAG
85321486 TGTGCG
65 TGTGCG
85321492 GACTTAATAT
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
83 43 0.65
84 23 0.35
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (83 bp):
AGCACTAAGTGTGCGAGTTTATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGT
GTGCGAGTTTGATTATGT
Found at i:85329623 original size:28 final size:28
Alignment explanation
Indices: 85329583--85329734 Score: 270
Period size: 28 Copynumber: 5.5 Consensus size: 28
85329573 AATTGTACAA
85329583 CACTAAGTGTGCGAGTTTGATTATGTAG
1 CACTAAGTGTGCGAGTTTGATTATGTAG
85329611 CACTAAGTGTGCGAGTTTGATTATGTAG
1 CACTAAGTGTGCGAGTTTGATTATGTAG
85329639 CACTAAGTGTGCGAGTTTGATTATGTAG
1 CACTAAGTGTGCGAGTTTGATTATGTAG
*
85329667 CACTAAGTGTGCGAGTTTGATTATATAG
1 CACTAAGTGTGCGAGTTTGATTATGTAG
*
85329695 CACTAAGTGTGCGAG-TTGATTATATAG
1 CACTAAGTGTGCGAGTTTGATTATGTAG
*
85329722 CACTGAGTGTGCG
1 CACTAAGTGTGCG
85329735 GACTTAATAT
Statistics
Matches: 122, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 24 0.20
28 98 0.80
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTGATTATGTAG
Found at i:85329649 original size:56 final size:56
Alignment explanation
Indices: 85329556--85329734 Score: 270
Period size: 56 Copynumber: 3.2 Consensus size: 56
85329546 GAGATTGGCG
* * * * *
85329556 CTAAGTGTGCGGGTTTAAATTGTACAACACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
85329613 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
85329669 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
85329724 CTGAGTGTGCG
1 CTAAGTGTGCG
85329735 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
55 23 0.20
56 75 0.66
57 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:85335583 original size:40 final size:40
Alignment explanation
Indices: 85335524--85335741 Score: 264
Period size: 40 Copynumber: 5.5 Consensus size: 40
85335514 CGGATGATAA
*
85335524 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
* *
85335564 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
* * *
85335604 CCGAGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* * * *
85335644 CCGGGCTAAGTCCCAAAGGCATTTGTACGAGTTACTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* *
85335684 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATAT
*
85335724 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
85335742 TACTTGGTTG
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 16 0.10
40 144 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:85343620 original size:40 final size:40
Alignment explanation
Indices: 85343565--85343782 Score: 291
Period size: 40 Copynumber: 5.5 Consensus size: 40
85343555 CGGATGATAA
* *
85343565 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
*
85343605 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
*
85343645 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* * *
85343685 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* *
85343725 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATAT
*
85343765 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
85343783 TACTTGGTTG
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 16 0.10
40 151 0.90
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:85350900 original size:13 final size:13
Alignment explanation
Indices: 85350868--85350892 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85350858 ATCGAACACG
85350868 GGCGTGTGCCACA
1 GGCGTGTGCCACA
85350881 GGCGTGTGCCAC
1 GGCGTGTGCCAC
85350893 GAGTGTGTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.32, G:0.40, T:0.16
Consensus pattern (13 bp):
GGCGTGTGCCACA
Found at i:85358435 original size:41 final size:41
Alignment explanation
Indices: 85358382--85358490 Score: 139
Period size: 40 Copynumber: 2.7 Consensus size: 41
85358372 CGCTGACTCA
*
85358382 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCC
* * * * * * *
85358423 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCC
85358463 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
85358491 TAAACCCCGA
Statistics
Matches: 53, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
40 32 0.60
41 21 0.40
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCC
Found at i:85361426 original size:38 final size:38
Alignment explanation
Indices: 85361383--85361761 Score: 218
Period size: 38 Copynumber: 9.0 Consensus size: 38
85361373 TTTCAAATTA
*
85361383 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
*
85361421 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACG-T--T
* * * * *
85361462 GGATCAATATATGTAACTGAGGCATATCCATTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGTATATCCACTTAGCACCACGTT
* * *
85361506 ACATGTTTAACTGTGGTATATCCACTTAGCACCAAGTTAAT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACG-T--T
* * *
85361547 GAATCAATATATGTAACCGTGGCATATCCACTTGGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGTATATCCACTTAGCACCACGTT
* **
85361591 ACATGTTTAACCGTGGTATATCCACTTAGCACCATATTAAT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCA-CGT--T
* * *
85361632 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACATT
1 --A-C-ATGTA--TAACCGTGGTATATCCACTTAGCACCACGTT
* *
85361676 ACATGTATCAATATGTGTAATCATGGTATATCCACTTAGCACCACGTT
1 ACATG------TA----TAACCGTGGTATATCCACTTAGCACCACGTT
* *
85361724 ACACGTATAACAGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
85361762 TTTTTATTCT
Statistics
Matches: 266, Mismatches: 40, Indels: 70
0.71 0.11 0.19
Matches are distributed among these distances:
38 112 0.42
39 3 0.01
40 8 0.03
41 6 0.02
42 5 0.02
43 3 0.01
44 6 0.02
45 9 0.03
46 5 0.02
47 76 0.29
48 33 0.12
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:85361497 original size:85 final size:85
Alignment explanation
Indices: 85361390--85361681 Score: 496
Period size: 85 Copynumber: 3.4 Consensus size: 85
85361380 TTAACATGTA
85361390 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
* *
85361455 CGTTAATGGATCAATATATG
66 AGTTAATGAATCAATATATG
* * * *
85361475 TAACTGAGGCATATCCATTTAGCACCACGTTACATGTTTAACTGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
85361540 AGTTAATGAATCAATATATG
66 AGTTAATGAATCAATATATG
*
85361560 TAACCGTGGCATATCCACTTGGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
85361625 TA-TTAATGAATCAATATATG
66 -AGTTAATGAATCAATATATG
*
85361645 TAACCGTGGCATATCCACTTAGCACCACATTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
85361682 ATCAATATGT
Statistics
Matches: 193, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
85 192 0.99
86 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
AGTTAATGAATCAATATATG
Found at i:85361667 original size:47 final size:48
Alignment explanation
Indices: 85361598--85361726 Score: 188
Period size: 48 Copynumber: 2.7 Consensus size: 48
85361588 GTTACATGTT
*
85361598 TAACCGTGGTATATCCACTTAGCACCATATTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACATTACATGAATCAATATATG
* * *
85361645 TAACCGTGGCATATCCACTTAGCACCACATTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACATTACATGAATCAATATATG
* * *
85361693 TAATCATGGTATATCCACTTAGCACCACGTTACA
1 TAACCGTGGTATATCCACTTAGCACCACATTACA
85361727 CGTATAACAG
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 30 0.41
48 43 0.59
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.30
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACATTACATGAATCAATATATG
Found at i:85361718 original size:133 final size:132
Alignment explanation
Indices: 85361513--85361757 Score: 366
Period size: 133 Copynumber: 1.8 Consensus size: 132
85361503 GTTACATGTT
* * *
85361513 TAACTGTGGTATATCCACTTAGCACCAAGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
1 TAACCGTGGCATATCCACTTAGCACCAAGTTAATGAATCAATATATGTAACCATGGCATATCCAC
* * * *
85361578 TTGGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCATATTAATGAATCAATATA
66 TTAGCACCACGTTACACGTATAACAGTGGTATATCCACTTAGCACCATATTAATGAATCAATATA
85361643 TG
131 TG
* * * *
85361645 TAACCGTGGCATATCCACTTAGCACCACA-TTACATGTATCAATATGTGTAATCATGGTATATCC
1 TAACCGTGGCATATCCACTTAGCACCA-AGTTA-ATGAATCAATATATGTAACCATGGCATATCC
85361709 ACTTAGCACCACGTTACACGTATAACAGTGGTATATCCACTTAGCACCA
64 ACTTAGCACCACGTTACACGTATAACAGTGGTATATCCACTTAGCACCA
85361758 CGTTTTTTTA
Statistics
Matches: 100, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
132 28 0.28
133 72 0.72
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (132 bp):
TAACCGTGGCATATCCACTTAGCACCAAGTTAATGAATCAATATATGTAACCATGGCATATCCAC
TTAGCACCACGTTACACGTATAACAGTGGTATATCCACTTAGCACCATATTAATGAATCAATATA
TG
Found at i:85362487 original size:27 final size:27
Alignment explanation
Indices: 85362457--85362761 Score: 314
Period size: 27 Copynumber: 11.3 Consensus size: 27
85362447 GAGGGTAAAA
* * * *
85362457 TGGTAATTCTATAAATCAAGGGTACTT
1 TGGTAATTTTACAAATCAGGGGTATTT
*
85362484 TGGTAATTTTACAAGTC-GAGGGTATTT
1 TGGTAATTTTACAAATCAG-GGGTATTT
*** **
85362511 CAATAATTTTACAGGTC-GAGGGTATTT
1 TGGTAATTTTACAAATCAG-GGGTATTT
* * *
85362538 TAGTAATTTCACAAATTAGGGGTATTT
1 TGGTAATTTTACAAATCAGGGGTATTT
85362565 TGGTAATTTTACAAA-CTAGGGGTATTT
1 TGGTAATTTTACAAATC-AGGGGTATTT
* * *
85362592 TGATAATATTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAATCAGGGGTATTT
85362619 TGGTAATTTTACAAA-CTAGGGGTATTT
1 TGGTAATTTTACAAATC-AGGGGTATTT
*
85362646 TGGTAATTTTACAAACCA-GGGTATTT
1 TGGTAATTTTACAAATCAGGGGTATTT
* *
85362672 TAGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAATCAGGGGTATTT
** * *
85362699 TGGTAATTTTGTAAACCAAGGGTATTT
1 TGGTAATTTTACAAATCAGGGGTATTT
*
85362726 TGGTAATTTTACAAATTAGGGGTATTT
1 TGGTAATTTTACAAATCAGGGGTATTT
*
85362753 TAGTAATTT
1 TGGTAATTT
85362762 GGTAAACTAA
Statistics
Matches: 238, Mismatches: 33, Indels: 14
0.84 0.12 0.05
Matches are distributed among these distances:
26 26 0.11
27 209 0.88
28 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
TGGTAATTTTACAAATCAGGGGTATTT
Found at i:85362588 original size:81 final size:81
Alignment explanation
Indices: 85362476--85362761 Score: 353
Period size: 81 Copynumber: 3.5 Consensus size: 81
85362466 TATAAATCAA
* * * * ***
85362476 GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAGGTC-GAGGGTATTTT
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTAATAATTTTACAAACCAG-GGGTATTTT
* * *
85362539 AGTAATTTCACAAATTAG
64 GGTAATTTTACAAACTAG
* *
85362557 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATATTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTGG
85362622 TAATTTTACAAACTAG
66 TAATTTTACAAACTAG
* *
85362638 GGGTATTTTGGTAATTTTACAAACCA-GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTGG
** * *
85362702 TAATTTTGTAAACCAA
66 TAATTTTACAAACTAG
* *
85362718 GGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTAGTAATTT
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAATAATTT
85362762 GGTAAACTAA
Statistics
Matches: 180, Mismatches: 22, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
80 71 0.39
81 104 0.58
82 5 0.03
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTGG
TAATTTTACAAACTAG
Found at i:85362715 original size:107 final size:108
Alignment explanation
Indices: 85362530--85362761 Score: 349
Period size: 107 Copynumber: 2.2 Consensus size: 108
85362520 TACAGGTCGA
** * *
85362530 GGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGA
1 GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGA
*
85362595 TAATATTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
66 TAATATTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
* * *
85362638 GGGTATTTTGGTAATTTTACAAACCA-GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGA
* ** *
85362702 TAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAATTAG
66 TAATATTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
85362745 GGGTATTTTAGTAATTT
1 GGGTATTTTAGTAATTT
85362762 GGTAAACTAA
Statistics
Matches: 111, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
107 89 0.80
108 22 0.20
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (108 bp):
GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGA
TAATATTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
Found at i:85369925 original size:30 final size:30
Alignment explanation
Indices: 85369877--85369987 Score: 93
Period size: 30 Copynumber: 3.6 Consensus size: 30
85369867 AGTGGAGGGG
*
85369877 AAGAGAAAA-GGA-AGAAAGGAGAAAATAGA
1 AAGA-AAAAGGGAGAGAAAGGAGAAAAAAGA
*
85369906 AAGAAAAAGGGAGAGAAAGGA-AGAAAAGAA
1 AAGAAAAAGGGAGAGAAAGGAGAAAAAAG-A
* * *
85369936 AAGAGAAAGAGAGGAGAAAGGGGAAAGAAAAGA
1 AAGAAAAAGGGA-GAGAAAGGAG-AA-AAAAGA
*
85369969 AAGAAAAATGGAGAAGAAA
1 AAGAAAAAGGGAG-AGAAA
85369988 AGGGTGGCTA
Statistics
Matches: 65, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
28 4 0.06
29 12 0.18
30 19 0.29
31 8 0.12
32 1 0.02
33 16 0.25
34 5 0.08
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (30 bp):
AAGAAAAAGGGAGAGAAAGGAGAAAAAAGA
Found at i:85369950 original size:24 final size:24
Alignment explanation
Indices: 85369905--85369971 Score: 57
Period size: 24 Copynumber: 2.8 Consensus size: 24
85369895 GAGAAAATAG
* *
85369905 AAAGAAAAAGGGAGAGAAAGGAAGA
1 AAAGAAAAAGAGAAAGAAAGG-AGA
*
85369930 AAAG-AAAAGAGAAAGAGAGGAGA
1 AAAGAAAAAGAGAAAGAAAGGAGA
* **
85369953 AAGGGGAAAGA-AAAGAAAG
1 AAAGAAAAAGAGAAAGAAAG
85369972 AAAAATGGAG
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
23 13 0.37
24 18 0.51
25 4 0.11
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (24 bp):
AAAGAAAAAGAGAAAGAAAGGAGA
Found at i:85375324 original size:11 final size:11
Alignment explanation
Indices: 85375308--85375334 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
85375298 ATTACTAGAT
85375308 GAACCTGTGAA
1 GAACCTGTGAA
85375319 GAACCTGTGAA
1 GAACCTGTGAA
85375330 GAACC
1 GAACC
85375335 AAGTAAACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.22, G:0.26, T:0.15
Consensus pattern (11 bp):
GAACCTGTGAA
Found at i:85381572 original size:15 final size:15
Alignment explanation
Indices: 85381533--85381577 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
85381523 CAAGAAAACT
*
85381533 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
*
85381548 -AGATAGAGAAACCCA
1 GA-ATAAAGAAACCCA
85381563 GAATAAAGAAACCCA
1 GAATAAAGAAACCCA
85381578 AGATATGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 1 0.04
15 23 0.92
16 1 0.04
ACGTcount: A:0.58, C:0.18, G:0.16, T:0.09
Consensus pattern (15 bp):
GAATAAAGAAACCCA
Found at i:85394660 original size:33 final size:33
Alignment explanation
Indices: 85394618--85394685 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
85394608 CTCACATCAT
85394618 ATGTCGGGATTACTAGTCCAGGCTAAATCCCCC
1 ATGTCGGGATTACTAGTCCAGGCTAAATCCCCC
85394651 ATGTCGGGATTACTAGTCCAGGCTAAATCCCCC
1 ATGTCGGGATTACTAGTCCAGGCTAAATCCCCC
85394684 AT
1 AT
85394686 TATATGAACT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (33 bp):
ATGTCGGGATTACTAGTCCAGGCTAAATCCCCC
Found at i:85399130 original size:42 final size:43
Alignment explanation
Indices: 85399084--85399182 Score: 112
Period size: 44 Copynumber: 2.3 Consensus size: 43
85399074 TCCCAACAGA
* *
85399084 GTCTTACACGAAATCA-AA-TATGATACCAACGTCCGAGACGCG
1 GTCTTACACGAAATCATAAGT-CGATACCAACGTCCCAGACGCG
* * * *
85399126 GTCTTACACATAAATCATAAGTCGATGCCAACGTCCCTGACGTG
1 GTCTTACAC-GAAATCATAAGTCGATACCAACGTCCCAGACGCG
85399170 GTCTTACACGAAA
1 GTCTTACACGAAA
85399183 ACACATATCG
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
42 9 0.19
43 9 0.19
44 28 0.60
45 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.22
Consensus pattern (43 bp):
GTCTTACACGAAATCATAAGTCGATACCAACGTCCCAGACGCG
Found at i:85402224 original size:27 final size:27
Alignment explanation
Indices: 85402191--85402358 Score: 189
Period size: 27 Copynumber: 6.3 Consensus size: 27
85402181 CATAAGTCAA
85402191 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
85402218 AGA-TACCGAAATACCCCTGTA-GGTAG
1 A-ATTACCGAAATACCCTTGTAGGGTAG
**
85402244 AATTACTTAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
85402271 AAATACCAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
85402298 AATTACTGAAATACTCC-TGTAAGGTAG
1 AATTACCGAAATAC-CCTTGTAGGGTAG
* * *
85402325 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
85402352 AATTACC
1 AATTACC
85402359 ATTTTACCCT
Statistics
Matches: 117, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
25 1 0.01
26 23 0.20
27 90 0.77
28 3 0.03
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:85402325 original size:54 final size:54
Alignment explanation
Indices: 85402191--85402357 Score: 212
Period size: 54 Copynumber: 3.1 Consensus size: 54
85402181 CATAAGTCAA
* *
85402191 AATTACCGAAATACCCTTGTAGGGTAGAGATACCGAAATACCCCTGTA-GGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* * *
85402244 AATTACTTAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* * * * * *
85402298 AATTACTGAAATACTCC-TGTAAGGTAGAATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATAC-CCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
85402352 AATTAC
1 AATTAC
85402358 CATTTTACCC
Statistics
Matches: 98, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 44 0.45
54 52 0.53
55 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
Found at i:85402877 original size:6 final size:6
Alignment explanation
Indices: 85402868--85402977 Score: 55
Period size: 6 Copynumber: 17.8 Consensus size: 6
85402858 TTGCATTCAC
* * * *
85402868 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTA ATTCTG ATTTTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * * * *
85402918 AGTCTG ATTCTG ATTCTA ATTTTG ATTCTG -TCACCTG ATTTTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
85402967 ATTCTG ATTCT
1 ATTCTG ATTCT
85402978 CATTTTTATT
Statistics
Matches: 77, Mismatches: 18, Indels: 18
0.68 0.16 0.16
Matches are distributed among these distances:
5 5 0.06
6 62 0.81
7 7 0.09
8 3 0.04
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:85402902 original size:25 final size:25
Alignment explanation
Indices: 85402874--85402934 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
85402864 TCACATTCTG
*
85402874 ATTCTGATTCTGTTACCTGA-TACTA
1 ATTCTGATTCTGTTACCTAAGT-CTA
* *
85402899 ATTCTGATTTTGTTACCTAAGTCTG
1 ATTCTGATTCTGTTACCTAAGTCTA
85402924 ATTCTGATTCT
1 ATTCTGATTCT
85402935 AATTTTGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 30 0.97
26 1 0.03
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGTTACCTAAGTCTA
Found at i:85402944 original size:37 final size:37
Alignment explanation
Indices: 85402890--85402977 Score: 95
Period size: 37 Copynumber: 2.4 Consensus size: 37
85402880 ATTCTGTTAC
* * *
85402890 CTGATACTAATTCTGATTTTGTTACCTAAGTCTGATT
1 CTGATTCTAATTCTGATTCTGTCACCTAAGTCTGATT
* * * *
85402927 CTGATTCTAATTTTGATTCTGTCACCTGATTTTGATT
1 CTGATTCTAATTCTGATTCTGTCACCTAAGTCTGATT
* *
85402964 TTGATTCTGATTCT
1 CTGATTCTAATTCT
85402978 CATTTTTATT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (37 bp):
CTGATTCTAATTCTGATTCTGTCACCTAAGTCTGATT
Found at i:85415926 original size:80 final size:81
Alignment explanation
Indices: 85415790--85415948 Score: 180
Period size: 80 Copynumber: 2.0 Consensus size: 81
85415780 ACCTTGCTCA
* * *
85415790 ATGTCTATTTCAATTCAAAAAGTATAGCCACATTCGGCTCAATTTATTTATTCAAACACACATGC
1 ATGTCTATTTCAATTCAAAAAGTATAGCCACATTCGGCTCAATTCATTTATCCAAACACACATCC
85415855 AGCACATTATATTTCT
66 AGCACATTATATTTCT
* * * * * * *
85415871 ATGTCTATTTCGAATT-AATAA-TTTAGCCTCATTTGGCTCTAA-TCATTTCTCCAAACATATAT
1 ATGTCTATTTC-AATTCAAAAAGTATAGCCACATTCGGCTC-AATTCATTTATCCAAACACACAT
*
85415933 CCATCACATTATATTT
64 CCAGCACATTATATTT
85415949 ATACATCTAT
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
80 44 0.68
81 17 0.26
82 4 0.06
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.39
Consensus pattern (81 bp):
ATGTCTATTTCAATTCAAAAAGTATAGCCACATTCGGCTCAATTCATTTATCCAAACACACATCC
AGCACATTATATTTCT
Found at i:85417041 original size:14 final size:15
Alignment explanation
Indices: 85417012--85417041 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
85417002 CAAAATTTAG
85417012 ACATGATACTTTCAC
1 ACATGATACTTTCAC
85417027 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
85417041 A
1 A
85417042 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Done.