Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 252 of 373
Found at i:85764457 original size:37 final size:37
Alignment explanation
Indices: 85764310--85764445 Score: 245
Period size: 37 Copynumber: 3.7 Consensus size: 37
85764300 TAGTCCACAC
*
85764310 ACGTAGTTATCGGGTCTTACCCGGACAAAATCTCCAA
1 ACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCAA
* *
85764347 ACGTAGTCATCGGGTCTTACCCGGACATAATCTCCAC
1 ACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCAA
85764384 ACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCAA
1 ACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCAA
85764421 ACGTAGTCATCGGGTCTTACCCGGA
1 ACGTAGTCATCGGGTCTTACCCGGA
85764446 ATATATTTCC
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 94 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (37 bp):
ACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCAA
Found at i:85764650 original size:48 final size:48
Alignment explanation
Indices: 85764586--85765005 Score: 691
Period size: 48 Copynumber: 8.8 Consensus size: 48
85764576 ATATACACAC
* * *
85764586 ATCTCCTACATGTTTCACACTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
85764634 ATCTCATTCATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
85764682 ATCTCGTACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
85764730 ATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
85764778 ATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
85764826 ATCTCATATATATTTCACACTAGCTATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
85764874 ATCT--TATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
85764920 ATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
85764968 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
85765006 TGTGACAACC
Statistics
Matches: 351, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 44 0.13
48 307 0.87
ACGTcount: A:0.29, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:85767702 original size:48 final size:50
Alignment explanation
Indices: 85767578--85768032 Score: 420
Period size: 48 Copynumber: 8.9 Consensus size: 50
85767568 GCGGAAATTG
85767578 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
*
85767628 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
* *
85767676 ATGTATGAGATATGTATATGTGGTAAAGCCGAGATATG-TATATGTGGTAAAGCCGA-
1 ATGTATGAGATATGTATATGTGGTAAAGCCGA-AT-GGCTA-ATGT-G-AAA---TAT
* * * ** * * * *
85767732 ATGGCTAATGTGAAATATGTATGA-GATATGTATATGTGGTAAAGCCGAATG-GCTAATGTGAAA
1 AT-G-T-A--TGAGATATGTAT-ATG-T-GGTA-AAGCCG-AATGGCTAATGTG--AA----ATA
85767795 T
50 T
85767796 ATGTATGAGATA-GTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
*
85767843 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
*
85767891 ATGTATGAGATAAGTATATGTGGTAAAG-CGAATGGCTAATGTG-AA-AT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
*
85767938 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-AT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
* * *
85767986 ATGAATGAGATATGTATGTGTGGTAAAGCCGAATGGCTAGTGTGAAA
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
85768033 CATGTAGGAG
Statistics
Matches: 348, Mismatches: 25, Indels: 65
0.79 0.06 0.15
Matches are distributed among these distances:
47 60 0.17
48 157 0.45
49 8 0.02
50 48 0.14
51 1 0.00
52 1 0.00
53 2 0.01
54 8 0.02
55 4 0.01
56 5 0.01
57 4 0.01
58 6 0.02
59 7 0.02
61 14 0.04
62 6 0.02
63 8 0.02
64 7 0.02
65 1 0.00
66 1 0.00
ACGTcount: A:0.36, C:0.06, G:0.28, T:0.30
Consensus pattern (50 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
Found at i:85767710 original size:24 final size:24
Alignment explanation
Indices: 85767682--85767731 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
85767672 AAATATGTAT
85767682 GAGATATGTATATGTGGTAAAGCC
1 GAGATATGTATATGTGGTAAAGCC
85767706 GAGATATGTATATGTGGTAAAGCC
1 GAGATATGTATATGTGGTAAAGCC
85767730 GA
1 GA
85767732 ATGGCTAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (24 bp):
GAGATATGTATATGTGGTAAAGCC
Found at i:85767719 original size:72 final size:72
Alignment explanation
Indices: 85767634--85767779 Score: 292
Period size: 72 Copynumber: 2.0 Consensus size: 72
85767624 ATATATATAT
85767634 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
85767699 TAAAGCC
66 TAAAGCC
85767706 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
85767771 TAAAGCC
66 TAAAGCC
85767778 GA
1 GA
85767780 ATGGCTAATG
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (72 bp):
GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
TAAAGCC
Found at i:85767799 original size:120 final size:121
Alignment explanation
Indices: 85767584--85767826 Score: 454
Period size: 120 Copynumber: 2.0 Consensus size: 121
85767574 ATTGATGTAT
85767584 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGT
85767649 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
66 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATA-GTATATGTGGTAAAGCC
*
85767706 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGT
85767769 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAGTATATGTGGTAAAGCC
66 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAGTATATGTGGTAAAGCC
85767825 GA
1 GA
85767827 ATGGCTAATG
Statistics
Matches: 120, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
119 19 0.16
120 61 0.51
121 2 0.02
122 38 0.32
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (121 bp):
GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGT
GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAGTATATGTGGTAAAGCC
Found at i:85767817 original size:95 final size:96
Alignment explanation
Indices: 85767706--85768044 Score: 592
Period size: 95 Copynumber: 3.6 Consensus size: 96
85767696 TGGTAAAGCC
85767706 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
85767771 TAAAGCCGAATGGCTAATGTGAAATATGTAT
66 TAAAGCCGAATGGCTAATGTGAAATATGTAT
*
85767802 GAGATA-GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGG
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
85767866 TAAAGCCGAATGGCTAATGTGAAATATGTAT
66 TAAAGCCGAATGGCTAATGTGAAATATGTAT
*
85767897 GAGATAAGTATATGTGGTAAAG-CGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
* *
85767961 TAAAGCCGAATGGCTAGTGTGAAATATGAAT
66 TAAAGCCGAATGGCTAATGTGAAATATGTAT
* * * *
85767992 GAGATATGTATGTGTGGTAAAGCCGAATGGCTAGTGTGAAACATGTAGGAGAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
85768045 GTGTGTATAT
Statistics
Matches: 232, Mismatches: 9, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
95 184 0.79
96 48 0.21
ACGTcount: A:0.36, C:0.06, G:0.29, T:0.29
Consensus pattern (96 bp):
GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
TAAAGCCGAATGGCTAATGTGAAATATGTAT
Found at i:85767964 original size:143 final size:143
Alignment explanation
Indices: 85767706--85768044 Score: 590
Period size: 143 Copynumber: 2.4 Consensus size: 143
85767696 TGGTAAAGCC
*
85767706 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGG
85767771 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAGTATATGTGGTAAAGCCGAATGGCTAAT
66 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAGTATATGTGGTAAAGCCGAATGGCTAAT
*
85767836 GTGAAATATGTAT
131 GTGAAATATGAAT
*
85767849 GAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGG
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGG
*
85767914 TAAAG-CGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
66 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATA-GTATATGTGGTAAAGCCGAATGGCTAA
85767978 TGTGAAATATGAAT
130 TGTGAAATATGAAT
* * * *
85767992 GAGATATGTATGTGTGGTAAAGCCGAATGGCTAGTGTGAAACATGTAGGAGAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
85768045 GTGTGTATAT
Statistics
Matches: 186, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
142 31 0.17
143 155 0.83
ACGTcount: A:0.36, C:0.06, G:0.29, T:0.29
Consensus pattern (143 bp):
GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGG
TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAGTATATGTGGTAAAGCCGAATGGCTAAT
GTGAAATATGAAT
Found at i:85768044 original size:48 final size:48
Alignment explanation
Indices: 85767706--85768044 Score: 592
Period size: 48 Copynumber: 7.1 Consensus size: 48
85767696 TGGTAAAGCC
85767706 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
85767754 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
85767802 GAGATA-GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
*
85767849 GAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
*
85767897 GAGATAAGTATATGTGGTAAAG-CGAATGGCTAATGTGAAATATGTAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
* *
85767944 GAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAAT
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
* * * *
85767992 GAGATATGTATGTGTGGTAAAGCCGAATGGCTAGTGTGAAACATGTAG
1 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
85768040 GAGAT
1 GAGAT
85768045 GTGTGTATAT
Statistics
Matches: 282, Mismatches: 7, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
47 93 0.33
48 189 0.67
ACGTcount: A:0.36, C:0.06, G:0.29, T:0.29
Consensus pattern (48 bp):
GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
Found at i:85768226 original size:37 final size:37
Alignment explanation
Indices: 85768185--85768330 Score: 229
Period size: 37 Copynumber: 3.9 Consensus size: 37
85768175 GGAAATATAT
*
85768185 TCCGGGTAAGACCCGATGACTACGTTTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
85768222 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
85768259 TCCGGGTAAGACCCGATGACTACGTTTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* **
85768296 TCCGGGTAAGACCCGATAACTTTGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
85768331 CATCTGAGCT
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.29
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:85769745 original size:120 final size:120
Alignment explanation
Indices: 85769593--85769977 Score: 626
Period size: 120 Copynumber: 3.2 Consensus size: 120
85769583 GAGTTATATA
* * *
85769593 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
1 TATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGAGCA
85769658 TTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
66 TTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
85769713 TATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGAGCA
1 TATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGAGCA
85769778 TTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
66 TTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * *
85769833 TATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCTCAAAGAGCA
1 TATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGAGCA
* * * * * * * *
85769898 TTTGTGCTAGAGTTACATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTA
66 TTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
85769953 TAACCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGGCTAAGTCCCGAAGAGCA
85769978 ATCATGCTGG
Statistics
Matches: 249, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 249 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGAGCA
TTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
Found at i:85769989 original size:40 final size:40
Alignment explanation
Indices: 85769591--85769977 Score: 567
Period size: 40 Copynumber: 9.7 Consensus size: 40
85769581 GAGAGTTATA
*
85769591 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * *
85769631 TGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
85769671 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
85769711 TGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
85769751 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
85769791 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * *
85769831 TGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * * *
85769871 TATATCCGGGCTAAGTCTCAAAGAGCATTTGTGCTAGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * * *
85769911 TACATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
85769951 TATAACCGGGCTAGGTCCCGAAGAGCA
1 TATATCCGGGCTAAGTCCCGAAGAGCA
85769978 ATCATGCTGG
Statistics
Matches: 309, Mismatches: 38, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 309 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
Found at i:85770203 original size:25 final size:25
Alignment explanation
Indices: 85770153--85770203 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
85770143 TGTGTAACAA
* *
85770153 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
85770178 CAAATGAGTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
85770203 C
1 C
85770204 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.20
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:85770272 original size:29 final size:28
Alignment explanation
Indices: 85770200--85770290 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 28
85770190 GGCACTGAGA
* *
85770200 GTGCGAGTTCTTCAACTGAGCACTATGT
1 GTGCGAGTTCTTTAATTGAGCACTATGT
**
85770228 GTGCGAGATT-GGTAATTGAGGCACTATGT
1 GTGCGAG-TTCTTTAATTGA-GCACTATGT
* *
85770257 GTGCGAGTTCTTTAATCGAGCGCTATGT
1 GTGCGAGTTCTTTAATTGAGCACTATGT
85770285 GTGCGA
1 GTGCGA
85770291 AATCAGTCAG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
28 28 0.54
29 24 0.46
ACGTcount: A:0.21, C:0.16, G:0.31, T:0.32
Consensus pattern (28 bp):
GTGCGAGTTCTTTAATTGAGCACTATGT
Found at i:85773777 original size:48 final size:48
Alignment explanation
Indices: 85773651--85773995 Score: 591
Period size: 48 Copynumber: 7.1 Consensus size: 48
85773641 GCGGAAATTG
85773651 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-AT
*
85773703 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
85773751 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
85773799 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* * *
85773847 ATGTATGAGATAAGTTTATGTGGTAAATCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
85773895 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
85773943 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
85773991 ATGTA
1 ATGTA
85773996 GGCGATGTGT
Statistics
Matches: 285, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
48 240 0.84
49 1 0.00
50 1 0.00
52 43 0.15
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:85774287 original size:37 final size:37
Alignment explanation
Indices: 85774142--85774286 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
85774132 GGAAATATAT
*
85774142 TCCGGGTAAGACCCGATGACTACGTTTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
85774179 TCTGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
85774216 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* **
85774253 TCCGGGTAAGACCCGATAACTTTGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
85774287 TCATCTGAGC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:85775159 original size:48 final size:48
Alignment explanation
Indices: 85775088--85775756 Score: 1178
Period size: 48 Copynumber: 14.0 Consensus size: 48
85775078 GGGTGTTACA
*
85775088 TTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
1 TTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCT
*
85775136 TTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
1 TTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCT
*
85775184 TTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
1 TTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCT
* *
85775232 TTACCACATATACATATCTCATATATATTTCACACAAGCCATTCGGCT
1 TTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCT
*
85775280 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
1 TTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCT
*
85775328 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
1 TTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCT
* *
85775376 TTACCACATATACATATCTCATACATATTTCAAATTAGCCATTCGGCT
1 TTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCT
*
85775424 TTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
1 TTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCT
* *
85775472 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGAT
1 TTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCT
*
85775520 TTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
1 TTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCT
*
85775568 TTA-CACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
1 TTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCT
* *
85775615 TTAGCACATATACATATCTCGTACATATTTCACACTAGCCATTCGGCT
1 TTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCT
*
85775663 TTACCACATATACATATCTCGTACATATTTCACACTAGCCATTCGGCT
1 TTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCT
85775711 TTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGG
1 TTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGG
85775757 TATTTCACAC
Statistics
Matches: 600, Mismatches: 20, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
47 45 0.08
48 555 0.93
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCT
Found at i:85775762 original size:21 final size:21
Alignment explanation
Indices: 85775736--85775777 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
85775726 ATCTCATACA
85775736 TATTTCACACTAGCCATTCGG
1 TATTTCACACTAGCCATTCGG
85775757 TATTTCACACTAGCCATTCGG
1 TATTTCACACTAGCCATTCGG
85775778 CTTTACCACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (21 bp):
TATTTCACACTAGCCATTCGG
Found at i:85775775 original size:69 final size:69
Alignment explanation
Indices: 85775688--85775825 Score: 267
Period size: 69 Copynumber: 2.0 Consensus size: 69
85775678 ATCTCGTACA
85775688 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
85775753 TCGG
66 TCGG
*
85775757 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCAT
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
85775822 TCGG
66 TCGG
85775826 CTTTACCACA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (69 bp):
TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
TCGG
Found at i:85775786 original size:117 final size:117
Alignment explanation
Indices: 85775640--85775873 Score: 432
Period size: 117 Copynumber: 2.0 Consensus size: 117
85775630 ATCTCGTACA
*
85775640 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTACATATTTCACACTAGCCAT
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
85775705 TCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGG
66 TCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGG
*
85775757 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCAT
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
**
85775822 TCGGCTTTACCACATATACATATCTCATACATATTTCACGTTAGCCATTCGG
66 TCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGG
85775874 CTTTACCACA
Statistics
Matches: 113, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
117 113 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (117 bp):
TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
TCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGG
Found at i:85775869 original size:165 final size:165
Alignment explanation
Indices: 85775592--85775921 Score: 588
Period size: 165 Copynumber: 2.0 Consensus size: 165
85775582 ATCTCATATA
* *
85775592 TATTTCACACTAGCCATTCGGCTTTAGCACATATACATATCTCGTACATATTTCACACTAGCCAT
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
*
85775657 TCGGCTTTACCACATATACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
66 TCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
85775722 ACATATCTCATACATATTTCACACTAGCCATTCGG
131 ACATATCCCATACATATTTCACACTAGCCATTCGG
*
85775757 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCAT
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
**
85775822 TCGGCTTTACCACATATACATATCTCATACATATTTCACGTTAGCCATTCGGCTTTACCACATAT
66 TCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
85775887 ACATATCCCATACATATTTCACATTAGCCATTCGG
131 ACATATCCCATACATATTTCACACTAGCCATTCGG
85775922 CTTTACCACA
Statistics
Matches: 157, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
165 157 1.00
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.34
Consensus pattern (165 bp):
TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
TCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
ACATATCCCATACATATTTCACACTAGCCATTCGG
Found at i:85775917 original size:213 final size:212
Alignment explanation
Indices: 85775545--85775969 Score: 751
Period size: 213 Copynumber: 2.0 Consensus size: 212
85775535 ATCTCATACA
*
85775545 TATTTCACATTAGCCATTCGGCTTTACACATATACATATCTCATATATATTTCACACTAGCCATT
1 TATTTCACACTAGCCATTCGGCTTTACACATATACATATCTCATATATATTTCACACTAGCCATT
* *
85775610 CGGCTTTAGCACATATACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATA
66 CGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
* *
85775675 CATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
131 CATATCCCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
85775740 TCACACTAGCCATTCGG
196 TCACACTAGCCATTCGG
85775757 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCAT
1 TATTTCACACTAGCCATTCGGCTTTA-CACATATACATATCTCATATATATTTCACACTAGCCAT
**
85775822 TCGGCTTTACCACATATACATATCTCATACATATTTCACGTTAGCCATTCGGCTTTACCACATAT
65 TCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
* *
85775887 ACATATCCCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
130 ACATATCCCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
*
85775952 TTCACATTAGCCATTCGG
195 TTCACACTAGCCATTCGG
85775970 CTTTACTACA
Statistics
Matches: 202, Mismatches: 10, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
212 25 0.12
213 177 0.88
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (212 bp):
TATTTCACACTAGCCATTCGGCTTTACACATATACATATCTCATATATATTTCACACTAGCCATT
CGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
CATATCCCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
TCACACTAGCCATTCGG
Found at i:85775988 original size:48 final size:48
Alignment explanation
Indices: 85775757--85775975 Score: 384
Period size: 48 Copynumber: 4.6 Consensus size: 48
85775747 AGCCATTCGG
* *
85775757 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
*
85775805 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
* *
85775853 TATTTCACGTTAGCCATTCGGCTTTACCACATATACATATCCCATACA
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
*
85775901 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
85775949 TATTTCACATTAGCCATTCGGCTTTAC
1 TATTTCACATTAGCCATTCGGCTTTAC
85775976 TACACACACA
Statistics
Matches: 164, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 164 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
Found at i:85817476 original size:27 final size:27
Alignment explanation
Indices: 85817446--85817497 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
85817436 ACAAGTGAGG
85817446 AAAAAGAAAAAGAGAATGAAAAAGAGC
1 AAAAAGAAAAAGAGAATGAAAAAGAGC
* ** *
85817473 AAAAAGAGATTGAGAGTGAAAAAGA
1 AAAAAGAAAAAGAGAATGAAAAAGA
85817498 AATTGAAGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.65, C:0.02, G:0.25, T:0.08
Consensus pattern (27 bp):
AAAAAGAAAAAGAGAATGAAAAAGAGC
Found at i:85821708 original size:564 final size:564
Alignment explanation
Indices: 85820640--85821770 Score: 2208
Period size: 564 Copynumber: 2.0 Consensus size: 564
85820630 TTTCTCTTTA
*
85820640 GCAAGCTTAAGATCCAAGTTGAATTGTTGGAGAGCCCAGTAATCTTTGTGTTCTAACTCTAAGGG
1 GCAAGCTTAAGATCCAAGTTGAATTGTTGGAGAGCCCAGTAATCTTTGTGTTATAACTCTAAGGG
85820705 TAGTTGGCAGGCTTTCCTAAAAACCAACCTATAGGCTGATATCCCTAAAGGTATCTTGTATGTTG
66 TAGTTGGCAGGCTTTCCTAAAAACCAACCTATAGGCTGATATCCCTAAAGGTATCTTGTATGTTG
85820770 TCTTGTAGGCCCATAAAACATTATCCAGTCTTTTGGACCAATCTCATCGATTCAGGCAAAGTACC
131 TCTTGTAGGCCCATAAAACATTATCCAGTCTTTTGGACCAATCTCATCGATTCAGGCAAAGTACC
85820835 TTCTTGAGTATGCCTTTTATCTCTTTGTTTTCCAGTTTAGCTTACCGATTTGTTGTGGATGGTAA
196 TTCTTGAGTATGCCTTTTATCTCTTTGTTTTCCAGTTTAGCTTACCGATTTGTTGTGGATGGTAA
85820900 GTTGTGGCAACTTTGTGCTTCACTCCATGTTTTTCGAGTAACCATTTCAACCAATTGTTCAAAAA
261 GTTGTGGCAACTTTGTGCTTCACTCCATGTTTTTCGAGTAACCATTTCAACCAATTGTTCAAAAA
85820965 ATGGGACCCCTCATCACTAATGATGGCCCTAGGAGTTCCAAACCTTGTGAACACATGTTTCTACA
326 ATGGGACCCCTCATCACTAATGATGGCCCTAGGAGTTCCAAACCTTGTGAACACATGTTTCTACA
85821030 AAAACTTCATCACAACCTTAGCATCGTTCATCGGTTATGCCTCGGCCTCAACCCACTTATATATA
391 AAAACTTCATCACAACCTTAGCATCGTTCATCGGTTATGCCTCGGCCTCAACCCACTTATATATA
*
85821095 TAGTCTACTGCTACCAATATGTACTTGTGACCAAAAGACAGAGGGAAAGGACCGAAAAAGTCAAT
456 TAGTCTACTGCTACCAATATGTACTTGTGACCAAAAGACAGAGGGAAAGGACCAAAAAAGTCAAT
*
85821160 ACCCCAAACATTAAATAATTCTACCTCAATAATGTTTGTTCAGG
521 ACCCCAAACATCAAATAATTCTACCTCAATAATGTTTGTTCAGG
85821204 GCAAGCTTAAGATCCAAGTTGAATTGTTGGAGAGCCCAGTAATCTTTGTGTTATAACTCTAAGGG
1 GCAAGCTTAAGATCCAAGTTGAATTGTTGGAGAGCCCAGTAATCTTTGTGTTATAACTCTAAGGG
85821269 TAGTTGGCAGGCTTTCCTAAAAACCAACCTATAGGCTGATATCCCTAAAGGTATCTTGTATGTTG
66 TAGTTGGCAGGCTTTCCTAAAAACCAACCTATAGGCTGATATCCCTAAAGGTATCTTGTATGTTG
85821334 TCTTGTAGGCCCATAAAACATTATCCAGTCTTTTGGACCAATCTCATCGATTCAGGCAAAGTACC
131 TCTTGTAGGCCCATAAAACATTATCCAGTCTTTTGGACCAATCTCATCGATTCAGGCAAAGTACC
*
85821399 TTCTTGAGTATGCCTTTTATCTCTTTGTTTTCCAGTTTAGCTTGCCGATTTGTTGTGGATGGTAA
196 TTCTTGAGTATGCCTTTTATCTCTTTGTTTTCCAGTTTAGCTTACCGATTTGTTGTGGATGGTAA
85821464 GTTGTGGCAACTTTGTGCTTCACTCCATGTTTTTCGAGTAACCATTTCAACCAATTGTTCAAAAA
261 GTTGTGGCAACTTTGTGCTTCACTCCATGTTTTTCGAGTAACCATTTCAACCAATTGTTCAAAAA
85821529 ATGGGACCCCTCATCACTAATGATGGCCCTAGGAGTTCCAAACCTTGTGAACACATGTTTCTACA
326 ATGGGACCCCTCATCACTAATGATGGCCCTAGGAGTTCCAAACCTTGTGAACACATGTTTCTACA
85821594 AAAACTTCATCACAACCTTAGCATCGTTCATCGGTTATGCCTCGGCCTCAACCCACTTATATATA
391 AAAACTTCATCACAACCTTAGCATCGTTCATCGGTTATGCCTCGGCCTCAACCCACTTATATATA
* *
85821659 TAGTCTACTGCTACCACTATGTACTTGTGACCAAAAGACGGAGGGAAAGGACCAAAAAAGTCAAT
456 TAGTCTACTGCTACCAATATGTACTTGTGACCAAAAGACAGAGGGAAAGGACCAAAAAAGTCAAT
85821724 ACCCCAAACATCAAATAATTCTACCTCAATAATGTTTGTTCAGG
521 ACCCCAAACATCAAATAATTCTACCTCAATAATGTTTGTTCAGG
85821768 GCA
1 GCA
85821771 CCTCATTTCT
Statistics
Matches: 561, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
564 561 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (564 bp):
GCAAGCTTAAGATCCAAGTTGAATTGTTGGAGAGCCCAGTAATCTTTGTGTTATAACTCTAAGGG
TAGTTGGCAGGCTTTCCTAAAAACCAACCTATAGGCTGATATCCCTAAAGGTATCTTGTATGTTG
TCTTGTAGGCCCATAAAACATTATCCAGTCTTTTGGACCAATCTCATCGATTCAGGCAAAGTACC
TTCTTGAGTATGCCTTTTATCTCTTTGTTTTCCAGTTTAGCTTACCGATTTGTTGTGGATGGTAA
GTTGTGGCAACTTTGTGCTTCACTCCATGTTTTTCGAGTAACCATTTCAACCAATTGTTCAAAAA
ATGGGACCCCTCATCACTAATGATGGCCCTAGGAGTTCCAAACCTTGTGAACACATGTTTCTACA
AAAACTTCATCACAACCTTAGCATCGTTCATCGGTTATGCCTCGGCCTCAACCCACTTATATATA
TAGTCTACTGCTACCAATATGTACTTGTGACCAAAAGACAGAGGGAAAGGACCAAAAAAGTCAAT
ACCCCAAACATCAAATAATTCTACCTCAATAATGTTTGTTCAGG
Found at i:85823092 original size:16 final size:16
Alignment explanation
Indices: 85823071--85823140 Score: 86
Period size: 16 Copynumber: 4.4 Consensus size: 16
85823061 TTTGGTTCAC
* *
85823071 TGTAATGGAATGGGGT
1 TGTAATGGAATAGAGT
*
85823087 TGTAATTGAATAGAGT
1 TGTAATGGAATAGAGT
* *
85823103 TGTAATGGAGTCGAGT
1 TGTAATGGAATAGAGT
*
85823119 TGTAATGGAATAGAGC
1 TGTAATGGAATAGAGT
85823135 TGTAAT
1 TGTAAT
85823141 CAGTAATTCA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.31, C:0.03, G:0.33, T:0.33
Consensus pattern (16 bp):
TGTAATGGAATAGAGT
Found at i:85823121 original size:32 final size:32
Alignment explanation
Indices: 85823070--85823140 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
85823060 GTTTGGTTCA
* * *
85823070 CTGTAATGGAATGGGGTTGTAATTGAATAGAG
1 CTGTAATGGAATCGAGTTGTAATGGAATAGAG
* *
85823102 TTGTAATGGAGTCGAGTTGTAATGGAATAGAG
1 CTGTAATGGAATCGAGTTGTAATGGAATAGAG
85823134 CTGTAAT
1 CTGTAAT
85823141 CAGTAATTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.04, G:0.32, T:0.32
Consensus pattern (32 bp):
CTGTAATGGAATCGAGTTGTAATGGAATAGAG
Found at i:85823208 original size:44 final size:45
Alignment explanation
Indices: 85823126--85823214 Score: 130
Period size: 44 Copynumber: 2.0 Consensus size: 45
85823116 AGTTGTAATG
85823126 GAATAGAGCTGTAATCAGTAATTCAATTTTTTGGTTGAATGGAATT
1 GAATAGAGCTGTAATCAGTAATTC-ATTTTTTGGTTGAATGGAATT
85823172 GAATAGAGCTGTAAT-AG-AATTC-TTGTGTTTGGTTGAATGGAAT
1 GAATAGAGCTGTAATCAGTAATTCATT-T-TTTGGTTGAATGGAAT
85823215 AGATGTTGTA
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
42 2 0.05
43 1 0.02
44 21 0.51
45 2 0.05
46 15 0.37
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (45 bp):
GAATAGAGCTGTAATCAGTAATTCATTTTTTGGTTGAATGGAATT
Found at i:85823215 original size:39 final size:39
Alignment explanation
Indices: 85823117--85823230 Score: 106
Period size: 44 Copynumber: 2.7 Consensus size: 39
85823107 ATGGAGTCGA
85823117 GTTGTAATGGAATAGAGCTGTAATCAGTAATTCAATTTTTTG
1 GTTG-AATGGAATAGAGCTGTAAT-AGTAATTC-ATTTTTTG
85823159 GTTGAATGGAATTGAATAGAGCTGTAATAG-AATTC-TTGTGTTTG
1 GTTGAAT-G----GAATAGAGCTGTAATAGTAATTCATT-T-TTTG
*
85823203 GTTGAATGGAATAGATGTTGTAATAGTA
1 GTTGAATGGAATAGA-GCTGTAATAGTA
85823231 TAAGGAAAAA
Statistics
Matches: 62, Mismatches: 1, Indels: 19
0.76 0.01 0.23
Matches are distributed among these distances:
39 7 0.11
40 9 0.15
41 4 0.06
42 7 0.11
43 2 0.03
44 16 0.26
45 2 0.03
46 15 0.24
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.39
Consensus pattern (39 bp):
GTTGAATGGAATAGAGCTGTAATAGTAATTCATTTTTTG
Found at i:85823320 original size:25 final size:26
Alignment explanation
Indices: 85823287--85823337 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
85823277 GTAGGTAGAT
*
85823287 GATTATTGTT-ATTAAATTTTAATAA
1 GATTATTGTTAAATAAATTTTAATAA
*
85823312 GATTATTGTTAAATATATTTTAATAA
1 GATTATTGTTAAATAAATTTTAATAA
85823338 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (26 bp):
GATTATTGTTAAATAAATTTTAATAA
Found at i:85824191 original size:21 final size:22
Alignment explanation
Indices: 85824165--85824205 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
85824155 CACTATACAC
*
85824165 AGGGGC-ACACGCCCGTGTGGG
1 AGGGGCAACACGCCCATGTGGG
85824186 AGGGGCAACACGCCCATGTG
1 AGGGGCAACACGCCCATGTG
85824206 ACCAATTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.20, C:0.29, G:0.41, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGCCCATGTGGG
Found at i:85824376 original size:28 final size:29
Alignment explanation
Indices: 85824325--85824379 Score: 87
Period size: 28 Copynumber: 1.9 Consensus size: 29
85824315 ACAGGGGTTT
85824325 TCACACGACCTGGCACACGCCCGTGTCCC
1 TCACACGACCTGGCACACGCCCGTGTCCC
85824354 TCACACGACCAT-G-ACACGCCCGTGTC
1 TCACACGACC-TGGCACACGCCCGTGTC
85824380 TTAGCCCGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 13 0.52
29 11 0.44
30 1 0.04
ACGTcount: A:0.20, C:0.45, G:0.20, T:0.15
Consensus pattern (29 bp):
TCACACGACCTGGCACACGCCCGTGTCCC
Found at i:85826479 original size:47 final size:47
Alignment explanation
Indices: 85826417--85826711 Score: 457
Period size: 47 Copynumber: 6.3 Consensus size: 47
85826407 CCTTCGGGAT
* *
85826417 TTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
* * * * *
85826464 TTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGTC
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
* * * * *
85826511 TTATCTCATATACACACTTTAACATTCATCACGTTGGCCACTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
85826558 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
85826605 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
85826652 TTATCACATATAAATACACTTTCACATTCATCACA-TGGCCATTCGGCC
1 TTATCACATAT--ATACACTTTCACATTCATCACATTGGCCATTCGGCC
85826700 TTATCACATATA
1 TTATCACATATA
85826712 CATATCTTGT
Statistics
Matches: 226, Mismatches: 20, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
46 1 0.00
47 179 0.79
48 24 0.11
49 22 0.10
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
Found at i:85826588 original size:25 final size:25
Alignment explanation
Indices: 85826560--85826638 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
85826550 ACTCGGCCTT
85826560 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
85826585 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
85826607 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
85826632 ATCACAT
1 ATCACAT
85826639 TGGCCATTCG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:85826613 original size:22 final size:22
Alignment explanation
Indices: 85826585--85826660 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
85826575 TTTCACATTC
85826585 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
85826607 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
85826631 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
85826654 ATCACAT
1 ATCACAT
85826661 ATAAATACAC
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:85830717 original size:40 final size:40
Alignment explanation
Indices: 85830653--85831083 Score: 695
Period size: 40 Copynumber: 10.8 Consensus size: 40
85830643 ATTTTGTCCA
*
85830653 AGCACGAATGC-CTTCGGGGCTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* *
85830692 AGCATGAATGCTCTTTGGGACTTAGCCCGG-TACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* *
85830731 AGCACGAATGCTCTTCGGGACTTAGCCCGGGTATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* * *
85830771 AGCACGAATGCTCTTCGGGATTTAGCCCGGGTATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
85830811 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* * *
85830851 AGCACGAATGCTCTTCGGAACTTAGTCAGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* * *
85830891 AGCACGAATGCTCTTCGGGACCTAGTCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
*
85830931 AGCACGAATGCTCTTCAGGACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
85830971 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* *
85831011 AGCACGAATGCTCTTCAGGACTTAGCCCGGGTACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
85831051 AGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATA
85831084 TAACATACTG
Statistics
Matches: 364, Mismatches: 26, Indels: 3
0.93 0.07 0.01
Matches are distributed among these distances:
39 47 0.13
40 317 0.87
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
Found at i:85833001 original size:47 final size:47
Alignment explanation
Indices: 85832939--85833280 Score: 515
Period size: 47 Copynumber: 7.3 Consensus size: 47
85832929 CCTTCGGGAT
* * *
85832939 TTATCACATTTATACACTTTCACATCCATCACATTGGACATTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
* * * * *
85832986 TTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGTC
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
* * * *
85833033 TTATCTCATATACACACTTTCACATTCATCACGTTGGCCACTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
*
85833080 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGACC
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
* **
85833127 TTATCAAATATATACACTTTCACATTCATCACATTGGCCACCCGGCC
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
85833174 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
85833221 TTATCACATATATATACACTTTCACATTCATCACA-TGGCCATTCGGCC
1 TTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
85833269 TTATCACATATA
1 TTATCACATATA
85833281 CATATCTTGT
Statistics
Matches: 266, Mismatches: 27, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
46 5 0.02
47 215 0.81
48 20 0.08
49 26 0.10
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
TTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCC
Found at i:85836169 original size:47 final size:47
Alignment explanation
Indices: 85836100--85836328 Score: 186
Period size: 47 Copynumber: 4.9 Consensus size: 47
85836090 GGGGTAGAAT
*
85836100 GTCGATGCCATGTCCCAGACATGTTCTTACACTGGCTCATATCTCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
* * * *
85836147 GTCGATGCCATGTCCTAGACATGGTCTTACGCTGACT-ATCGTCATCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATC-TCAA
* * * * * * *
85836195 GGCCGACGCCATGTCACAGACATGGTCTTACACTGACACATCTCT-TA
1 -GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
* *
85836242 G-CCAGTG-CATGTCCCAGACAT-GTCTTACACTAGCT--TGAGTCTCAA
1 GTCGA-TGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-A-TCTCAA
* *
85836287 -TGCTGATGCCATTTCCTAGACATGGTCTTACACTGGCTCATA
1 GT-C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATA
85836329 ATAACCCATG
Statistics
Matches: 142, Mismatches: 25, Indels: 28
0.73 0.13 0.14
Matches are distributed among these distances:
42 1 0.01
44 14 0.10
45 16 0.11
46 7 0.05
47 49 0.35
48 18 0.13
49 34 0.24
50 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
Found at i:85841721 original size:42 final size:42
Alignment explanation
Indices: 85841608--85841970 Score: 189
Period size: 42 Copynumber: 8.3 Consensus size: 42
85841598 ATATGTCGTA
* * * * * *
85841608 CAATGCCATATCCCAGATATGGTCTTACATGTATTATCATAT
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
*
85841650 CGAA-GCCAATAG-CCCAG-CTATGGTCTTACACGAAATCTCATAA
1 C-AATGCC-AT-GTCCCAGAC-ATGGTCTTACACGAAATCTCATAT
* * * * *
85841693 CGATGCTATGTCCCAGACATGGTCTTACACGTAATATCATAC
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
* * *
85841735 CAATGCCAATAG-CCTAG-CTATGGTCTTACACGGAATCTCGTAT
1 CAATGCC-AT-GTCCCAGAC-ATGGTCTTACACGAAATCTCATAT
* * * * * * *
85841778 CAATGCCATGTCACAGAAATGGCCTTGCATGAAATATTATAT
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
* * * *
85841820 CAAAGTCATGTCCCAGACATGGTCTTACATGAAGTCTCATAACGGTGT
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTCAT-A-----T
* * * *
85841868 CGATGCCATGTCCCAGACATGGTCTTATACGAGACCTCATATCGAT
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTC--AT--AT
* * * *
85841914 GCCAATGCCATATCCTAGATATGGTCTTACATGAAATCTCATA-
1 --CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
85841957 CAGATGCCGATGTC
1 CA-ATGCC-ATGTC
85841971 ATATCCTAGA
Statistics
Matches: 240, Mismatches: 56, Indels: 49
0.70 0.16 0.14
Matches are distributed among these distances:
41 4 0.02
42 97 0.40
43 70 0.29
44 2 0.01
46 3 0.01
48 61 0.25
50 2 0.01
51 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (42 bp):
CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
Found at i:85841761 original size:85 final size:85
Alignment explanation
Indices: 85841618--85841863 Score: 248
Period size: 85 Copynumber: 2.9 Consensus size: 85
85841608 CAATGCCATA
* * * *
85841618 TCCCAGATATGGTCTTACATGTATTATCATATCGAAGCCAATAGCCCAGCTATGGTCTTACACGA
1 TCCCAGACATGGTCTTACACGTAATATCATATCCAAGCCAATAGCCCAGCTATGGTCTTACACGA
85841683 AATCTCATAACGATGCTATG
66 AATCTCATAACGATGCTATG
*
85841703 TCCCAGACATGGTCTTACACGTAATATCATA-CCAATGCCAATAGCCTAGCTATGGTCTTACACG
1 TCCCAGACATGGTCTTACACGTAATATCATATCCAA-GCCAATAGCCCAGCTATGGTCTTACACG
* * * * *
85841767 GAATCTCGTATCAATGCCATG
65 AAATCTCATAACGATGCTATG
* * * * * * * * * *
85841788 TCACAGAAATGGCCTTGCATGAAATATTATATCAAAGTC-AT-GTCCCAGAC-ATGGTCTTACAT
1 TCCCAGACATGGTCTTACACGTAATATCATATCCAAGCCAATAG-CCCAG-CTATGGTCTTACAC
*
85841850 GAAGTCTCATAACG
64 GAAATCTCATAACG
85841864 GTGTCGATGC
Statistics
Matches: 131, Mismatches: 26, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
83 1 0.01
84 29 0.22
85 98 0.75
86 3 0.02
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (85 bp):
TCCCAGACATGGTCTTACACGTAATATCATATCCAAGCCAATAGCCCAGCTATGGTCTTACACGA
AATCTCATAACGATGCTATG
Found at i:85841782 original size:43 final size:43
Alignment explanation
Indices: 85841608--85841785 Score: 168
Period size: 43 Copynumber: 4.2 Consensus size: 43
85841598 ATATGTCGTA
* * * *
85841608 CAATGCC-ATATCCCAGATATGGTCTTACATGTATTATCATAT
1 CAATGCCAATAGCCCAGCTATGGTCTTACACGTAATATCATAT
* * *
85841650 CGAA-GCCAATAGCCCAGCTATGGTCTTACACGAAATCTCATAA
1 C-AATGCCAATAGCCCAGCTATGGTCTTACACGTAATATCATAT
* * *
85841693 CGATG-CTAT-GTCCCAGAC-ATGGTCTTACACGTAATATCATAC
1 CAATGCCAATAG-CCCAG-CTATGGTCTTACACGTAATATCATAT
* * * *
85841735 CAATGCCAATAGCCTAGCTATGGTCTTACACGGAATCTCGTAT
1 CAATGCCAATAGCCCAGCTATGGTCTTACACGTAATATCATAT
85841778 CAATGCCA
1 CAATGCCA
85841786 TGTCACAGAA
Statistics
Matches: 109, Mismatches: 19, Indels: 15
0.76 0.13 0.10
Matches are distributed among these distances:
41 1 0.01
42 39 0.36
43 68 0.62
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
CAATGCCAATAGCCCAGCTATGGTCTTACACGTAATATCATAT
Found at i:85842001 original size:48 final size:48
Alignment explanation
Indices: 85841838--85842002 Score: 165
Period size: 48 Copynumber: 3.4 Consensus size: 48
85841828 TGTCCCAGAC
* * * * * * *
85841838 ATGGTCTTACATGA-AGTCTCATAACGGTGTCGATGCCATGTCCCAGAC
1 ATGGTCTTATATGAGA-TCTCATATCGATGCCGATGCCATATCCTAGAT
* * *
85841886 ATGGTCTTATACGAGACCTCATATCGATGCCAATGCCATATCCTAGAT
1 ATGGTCTTATATGAGATCTCATATCGATGCCGATGCCATATCCTAGAT
* * *
85841934 ATGGTCTTACATGAAATCTCATA-CAGATGCCGATGTCATATCCTAGAT
1 ATGGTCTTATATGAGATCTCATATC-GATGCCGATGCCATATCCTAGAT
85841982 ATGGTCTTATAT-AGGATCTCA
1 ATGGTCTTATATGA-GATCTCA
85842003 ATACTCACAT
Statistics
Matches: 96, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
47 2 0.02
48 93 0.97
49 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (48 bp):
ATGGTCTTATATGAGATCTCATATCGATGCCGATGCCATATCCTAGAT
Found at i:85846818 original size:28 final size:28
Alignment explanation
Indices: 85846778--85846847 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
85846768 ATAGTAAGTC
*
85846778 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
85846806 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
*
85846834 TGCACACTTAGTGC
1 CGCACACTTAGTGC
85846848 CAATCTCATA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 37 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:85847413 original size:101 final size:105
Alignment explanation
Indices: 85847237--85847534 Score: 505
Period size: 101 Copynumber: 2.8 Consensus size: 105
85847227 CTTCTTAAAC
* *
85847237 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAATATAATAAACAATTCAAGTCA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
85847302 TTAATCCATGCATATTGGTCGGCTACTTTCATC-T-TT-T
66 TTAATCCATGCATATTGGTCGGCTACTTTCATCTTATTAT
85847339 ATAATATATTAACATATATT-AAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
*
85847403 GTAATCCATGCATATTGGTCGGCTACTTTCATCTTTTATTAAAT
66 TTAATCCATGCATATTGGTCGGCTACTTTCATC--TTATT--AT
85847447 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
85847512 TTAATCCATGCATATTGGTCGGC
66 TTAATCCATGCATATTGGTCGGC
85847535 CGTTAATTCC
Statistics
Matches: 184, Mismatches: 4, Indels: 9
0.93 0.02 0.05
Matches are distributed among these distances:
101 74 0.40
102 20 0.11
104 1 0.01
105 2 0.01
108 21 0.11
109 66 0.36
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (105 bp):
ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
TTAATCCATGCATATTGGTCGGCTACTTTCATCTTATTAT
Found at i:85847495 original size:109 final size:107
Alignment explanation
Indices: 85847216--85847534 Score: 515
Period size: 109 Copynumber: 3.0 Consensus size: 107
85847206 GAAAGATGAA
* *
85847216 TACTTTCCTCTCTTCTTAAACATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAA
1 TACTTTCATCT-TT-TTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAA
* *
85847281 TATAATAAACAATTCAAGTCATTAATCCATGCATATTGGTCGGC
64 CATAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
85847325 TACTTTCATC--TTT---TATAATATATTAACATATATT-AAGTATACCATAATGCCATAAAACA
1 TACTTTCATCTTTTTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACA
*
85847384 TAATAAATAATTCAAGTCAGTAATCCATGCATATTGGTCGGC
66 TAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
85847426 TACTTTCATCTTTTATTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAA
1 TACTTTCATC-TTT-TTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAA
85847491 CATAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
64 CATAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
85847535 CGTTAATTCC
Statistics
Matches: 196, Mismatches: 6, Indels: 16
0.90 0.03 0.07
Matches are distributed among these distances:
101 74 0.38
102 20 0.10
104 1 0.01
105 4 0.02
106 1 0.01
108 21 0.11
109 75 0.38
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (107 bp):
TACTTTCATCTTTTTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACA
TAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
Found at i:85849630 original size:22 final size:22
Alignment explanation
Indices: 85849604--85849647 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
85849594 AGATTTTGAG
85849604 GAAGTGATTAAGAACTAAAATT
1 GAAGTGATTAAGAACTAAAATT
85849626 GAAGTGATTAAGAACTAAAATT
1 GAAGTGATTAAGAACTAAAATT
85849648 TAACTAAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.05, G:0.18, T:0.27
Consensus pattern (22 bp):
GAAGTGATTAAGAACTAAAATT
Found at i:85851188 original size:27 final size:27
Alignment explanation
Indices: 85851158--85851212 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
85851148 TATTATAGAA
*
85851158 TTAATTAAAA-TTAAATATTTTCATAAT
1 TTAAGTAAAATTTAAATATTTT-ATAAT
*
85851185 TTAAGTAAAATTTAATTATTTTATAAT
1 TTAAGTAAAATTTAAATATTTTATAAT
85851212 T
1 T
85851213 ATATTATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 15 0.60
28 10 0.40
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (27 bp):
TTAAGTAAAATTTAAATATTTTATAAT
Found at i:85854644 original size:16 final size:16
Alignment explanation
Indices: 85854599--85854645 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
85854589 AAATTAAATT
85854599 AAATTAA-CTAAATGC
1 AAATTAATCTAAATGC
* *
85854614 AAAGTGATCCTAAATGC
1 AAATTAAT-CTAAATGC
85854631 AAATTAATCTAAATG
1 AAATTAATCTAAATG
85854646 TAATGTATGC
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 5 0.19
16 7 0.27
17 14 0.54
ACGTcount: A:0.49, C:0.13, G:0.11, T:0.28
Consensus pattern (16 bp):
AAATTAATCTAAATGC
Found at i:85873742 original size:5 final size:6
Alignment explanation
Indices: 85873702--85873744 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
85873692 CACTAATCCC
** *
85873702 AAAAAT AAAAAT AAAATAT ATTAGT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAA-AT AAAAAT AAAAAT AAAAAT AAAAAT
85873745 TGTATCTATA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
6 26 0.87
7 4 0.13
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (6 bp):
AAAAAT
Found at i:85874666 original size:53 final size:53
Alignment explanation
Indices: 85874608--85874713 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
85874598 GTTTGTATTC
85874608 GATTGATGAAGTGCAATAATCCTCAAATGTTTAATCCCATTTACATAGCAAGT
1 GATTGATGAAGTGCAATAATCCTCAAATGTTTAATCCCATTTACATAGCAAGT
*
85874661 GATTGATGAAGTGCAATAATCCTCAAATGTTTAATCGCATTTACATAGCAAGT
1 GATTGATGAAGTGCAATAATCCTCAAATGTTTAATCCCATTTACATAGCAAGT
85874714 CCTCCAAAGA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (53 bp):
GATTGATGAAGTGCAATAATCCTCAAATGTTTAATCCCATTTACATAGCAAGT
Found at i:85876118 original size:22 final size:22
Alignment explanation
Indices: 85876093--85876141 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
85876083 CCACAGAGTC
*
85876093 TCATACTACC-ATTACAGGGCTT
1 TCATACTACCAATTA-AGGGATT
85876115 TCATACTACCAATTAAGGGATT
1 TCATACTACCAATTAAGGGATT
85876137 TCATA
1 TCATA
85876142 TACTGGTGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 21 0.84
23 4 0.16
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (22 bp):
TCATACTACCAATTAAGGGATT
Found at i:85877607 original size:21 final size:19
Alignment explanation
Indices: 85877583--85877632 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
85877573 CAAGTTAAAC
85877583 AAAAGGAAAAAATTGTAAAAT
1 AAAAGGAAAAAATTG--AAAT
**
85877604 AAAAGGACTAAATTGAAAT
1 AAAAGGAAAAAATTGAAAT
*
85877623 AAAAGTAAAA
1 AAAAGGAAAA
85877633 CTAAAATAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
19 11 0.46
21 13 0.54
ACGTcount: A:0.66, C:0.02, G:0.14, T:0.18
Consensus pattern (19 bp):
AAAAGGAAAAAATTGAAAT
Found at i:85880538 original size:28 final size:28
Alignment explanation
Indices: 85880506--85880564 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
85880496 CAAGGAGTTA
*
85880506 TTTACACAAGCCAATCAGTTTCCAAACG
1 TTTACACAAGCCAATCAATTTCCAAACG
85880534 TTTACACAAGCCAATCAATTTCCAAACG
1 TTTACACAAGCCAATCAATTTCCAAACG
85880562 TTT
1 TTT
85880565 TTTCTCATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.08, T:0.29
Consensus pattern (28 bp):
TTTACACAAGCCAATCAATTTCCAAACG
Found at i:85885428 original size:48 final size:48
Alignment explanation
Indices: 85885366--85886326 Score: 1495
Period size: 48 Copynumber: 20.0 Consensus size: 48
85885356 TATATATGTG
* *
85885366 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
85885414 TGTGGTAAAGCCGAATGGGTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
85885462 TGTGGTAAAGCCGAATGGGTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
85885510 TGTGGTAAAGCCGAATGGCTTGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
85885558 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGACATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
85885606 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTACGAGATATGCATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
85885654 TGTGGTAAAGGCGAATGGCTAGTGTGAAATATATACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
85885702 TGTGGTAAAGGCGAATGGCTAGTGTGAAATATGTACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
85885750 TGTGGTAAAGGCGAATGGCTAGTGTGAAATATGCACGAGATCGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT----G-TAT-GAGATATGTATA
*
85885804 TGTGGTAAAGCCGAATGCCTAGTGTGAAATATGTACT--G-TATG----
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA-TGAGATATGTATA
85885846 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
85885894 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
85885942 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
85885990 TGTGGTAAAGCCGAAAGGCTAGTGTGAAATATGTACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
85886038 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
85886086 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATTTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
85886134 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
85886182 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
85886230 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATG
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
** * *
85886278 TGTGGTAAAGCTAAATGGCTAGTGTGAAATATGTAGGAGATGTGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
85886326 T
1 T
85886327 ATTGTGGTCG
Statistics
Matches: 863, Mismatches: 36, Indels: 28
0.93 0.04 0.03
Matches are distributed among these distances:
41 1 0.00
42 34 0.04
43 1 0.00
44 4 0.00
46 4 0.00
47 1 0.00
48 771 0.89
49 1 0.00
50 2 0.00
52 1 0.00
53 1 0.00
54 42 0.05
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:85886509 original size:37 final size:37
Alignment explanation
Indices: 85886459--85886598 Score: 253
Period size: 37 Copynumber: 3.8 Consensus size: 37
85886449 GGAAATATAT
85886459 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
**
85886496 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTACG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
85886533 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
85886570 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
85886599 GGACTATTCG
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:85887936 original size:40 final size:40
Alignment explanation
Indices: 85887874--85888152 Score: 486
Period size: 40 Copynumber: 7.0 Consensus size: 40
85887864 TTGAGAATTA
* *
85887874 TATAGCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
85887914 TATGTCTGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
85887954 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
85887994 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
85888034 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
85888074 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
85888114 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
85888153 ATGTGCATTG
Statistics
Matches: 228, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 228 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:85888366 original size:25 final size:25
Alignment explanation
Indices: 85888316--85888366 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
85888306 TGTGTAACAA
* *
85888316 CAAATGAATAGGGGCACTATATGTG
1 CAAATGAATAGAGGCACTAGATGTG
*
85888341 CAAATGATTAGAGGCACTGAGA-GTG
1 CAAATGAATAGAGGCACT-AGATGTG
85888366 C
1 C
85888367 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTAGATGTG
Found at i:85891520 original size:48 final size:48
Alignment explanation
Indices: 85891458--85892178 Score: 1019
Period size: 48 Copynumber: 15.0 Consensus size: 48
85891448 TATATATGTG
* * *
85891458 TGTGGTAAAGCCGAATGGCTAATGTGTAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
85891506 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
** *
85891554 TGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAGATATGTATT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
85891602 TGTGGTAAAGCCGAATGGCTAGTCTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
85891650 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
85891698 TGTGGTAAAGCCGTATGGCTAGTGTGTAATATGTACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * * *
85891746 TGTGGTAAAGCCGAACGACTAGTGTGTAATATGTACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
85891794 TGTTGTAAAGCCGAATGGCTAGTGTGAAATATG--T---A-CTGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
85891836 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
85891884 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGCACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
85891932 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGCACGAGATATG--TA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
85891978 TGTGGTAAAGCCGAATGGCTA-TGTGAAATATGCACGAGATATACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT------G-TAT--GAGATATGTATA
* *
85892034 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATC
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
85892082 TGTGGTAAAGCCAAATGGCTAGTGTGAAATATGAATGAGATATGTATG
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
85892130 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGATGTGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
85892178 T
1 T
85892179 ATTGTGGCCG
Statistics
Matches: 616, Mismatches: 39, Indels: 36
0.89 0.06 0.05
Matches are distributed among these distances:
42 38 0.06
43 1 0.00
45 10 0.02
46 23 0.04
47 1 0.00
48 496 0.81
50 3 0.00
51 2 0.00
52 1 0.00
54 8 0.01
56 23 0.04
57 10 0.02
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:85892000 original size:21 final size:21
Alignment explanation
Indices: 85891930--85892002 Score: 60
Period size: 21 Copynumber: 3.3 Consensus size: 21
85891920 GAGATATGTA
85891930 TATGTGGTAAAGCCGAATGGC
1 TATGTGGTAAAGCCGAATGGC
* *
85891951 TA-GTGTGAAATATGCACGAGATATG-
1 TATGTG-GTAA-A-GC-CGA-AT-GGC
85891976 TATGTGGTAAAGCCGAATGGC
1 TATGTGGTAAAGCCGAATGGC
85891997 TATGTG
1 TATGTG
85892003 AAATATGCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 16
0.67 0.07 0.27
Matches are distributed among these distances:
20 4 0.10
21 13 0.32
22 4 0.10
23 4 0.10
24 4 0.10
25 7 0.17
26 4 0.10
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.27
Consensus pattern (21 bp):
TATGTGGTAAAGCCGAATGGC
Found at i:85892361 original size:37 final size:37
Alignment explanation
Indices: 85892311--85892450 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
85892301 GGAAATATAT
85892311 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
85892348 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
85892385 TCCAGGTAAGACCCGATGACTACGTTTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
85892422 TCCGGGTAAGAACCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
85892451 GGACTATTCG
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:85894963 original size:40 final size:40
Alignment explanation
Indices: 85894869--85895099 Score: 295
Period size: 40 Copynumber: 5.8 Consensus size: 40
85894859 TGGATGAAAA
* * ** * *
85894869 CCGGGCTAAGACCCGAAGGCATCTGCACTAGTGACT-AAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
85894908 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
85894948 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
85894988 CCTGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
85895028 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
85895068 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
85895100 AGTTATATCC
Statistics
Matches: 169, Mismatches: 21, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
39 31 0.18
40 136 0.80
41 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:85895086 original size:120 final size:119
Alignment explanation
Indices: 85894874--85895092 Score: 325
Period size: 120 Copynumber: 1.8 Consensus size: 119
85894864 GAAAACCGGG
*
85894874 CTAAGACCCGAAGGCATCTGCACTAGTGACTAATCCGGGCTAAGTCCCGAAGGCATCTGTGCGAG
1 CTAAGACCCGAAGGCATCTGCACGAGTGACTAATCCGGGCTAAGTCCCGAAGGCATCTGTGCGAG
85894939 TTACTAAACCCGGGCTAAGTCCCGAAGGCATTTGTGCAAATTACTAAATCCTGA
66 TTACTAAACCCGGGCTAAGTCCCGAAGGCATTTGTGCAAATTACTAAATCCTGA
* * ** *
85894993 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAAT-TGTGCG
1 CTAAGACCCGAAGGCATCTGCACGAGTGACT-AATCCGGGCTAAGTCCCGAAGGC-ATCTGTGCG
* *
85895057 AGTTACTCTAA-CCGGGCTATGTCCCGAAGGCATTTG
64 AGTTACT-AAACCCGGGCTAAGTCCCGAAGGCATTTG
85895093 AGCGAGTAGT
Statistics
Matches: 89, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
119 25 0.28
120 60 0.67
121 4 0.04
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.23
Consensus pattern (119 bp):
CTAAGACCCGAAGGCATCTGCACGAGTGACTAATCCGGGCTAAGTCCCGAAGGCATCTGTGCGAG
TTACTAAACCCGGGCTAAGTCCCGAAGGCATTTGTGCAAATTACTAAATCCTGA
Found at i:85902889 original size:38 final size:38
Alignment explanation
Indices: 85902809--85903030 Score: 301
Period size: 39 Copynumber: 5.8 Consensus size: 38
85902799 TTGGATGAAA
* * *
85902809 CCGGGCTAAGT-CCGAAGGCATT-TGCCTAGTGACTATT
1 CCGGGCTAAGTCCCGAAGGCATTGTG-CGAGTTACTAAT
85902846 CCGGGC-AAGTCCCGAA-GCATCTGTGCGAGTTACTAAT
1 CCGGGCTAAGTCCCGAAGGCAT-TGTGCGAGTTACTAAT
*
85902883 ACCGGGCTAAGTCCCGAAGGCATTGTGCGAATTACTAAT
1 -CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAT
85902922 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
1 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAT
*
85902961 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTA-AT
*
85903000 CCGGGCT-AGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGT
85903031 AGTTATATCC
Statistics
Matches: 169, Mismatches: 7, Indels: 16
0.88 0.04 0.08
Matches are distributed among these distances:
36 8 0.05
37 21 0.12
38 57 0.34
39 79 0.47
40 4 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (38 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAT
Found at i:85902967 original size:77 final size:78
Alignment explanation
Indices: 85902808--85903030 Score: 323
Period size: 77 Copynumber: 2.9 Consensus size: 78
85902798 ATTGGATGAA
* * * *
85902808 ACCGGGCTAAGT-CCGAAGGCATT-TGCCTAGTGACTATTCCGGGC-AAGTCCCGAA-GCATCTG
1 ACCGGGCTAAGTCCCGAAGGCATTGTG-CGAGTTACTAATCCGGGCTAAGTCCCGAAGGCATTTG
85902869 TGCGAGTTACTAAT
65 TGCGAGTTACTAAT
*
85902883 ACCGGGCTAAGTCCCGAAGGCATTGTGCGAATTACTAATCCGGGCTAAGTCCCGAAGGCATTTGT
1 ACCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAATCCGGGCTAAGTCCCGAAGGCATTTGT
85902948 GCGAGTTACTAAT
66 GCGAGTTACTAAT
*
85902961 -CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAACCGGGCT-AGTCCCGAAGGCATTTG
1 ACCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTA-ATCCGGGCTAAGTCCCGAAGGCATTTG
*
85903024 AGCGAGT
65 TGCGAGT
85903031 AGTTATATCC
Statistics
Matches: 135, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
75 12 0.09
76 25 0.19
77 70 0.52
78 28 0.21
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (78 bp):
ACCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTAAT
Found at i:85905115 original size:14 final size:15
Alignment explanation
Indices: 85905096--85905138 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
85905086 TATGTATATA
85905096 ATAATAATATA-AAT
1 ATAATAATATATAAT
85905110 ATAATAATGTATATAAT
1 ATAATAA--TATATAAT
85905127 A-AATAATATATA
1 ATAATAATATATA
85905139 TAGAATATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 13 0.50
16 9 0.35
17 4 0.15
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (15 bp):
ATAATAATATATAAT
Found at i:85905134 original size:30 final size:29
Alignment explanation
Indices: 85905087--85905145 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
85905077 GATGGTAGAT
*
85905087 ATGTATATAATAATAATATAAATATAATA
1 ATGTATATAATAATAATATAAATAGAATA
*
85905116 ATGTATATAATAAATAATATATATAGAATA
1 ATGTATATAAT-AATAATATAAATAGAATA
85905146 TAGAAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 11 0.41
30 16 0.59
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (29 bp):
ATGTATATAATAATAATATAAATAGAATA
Found at i:85905324 original size:38 final size:37
Alignment explanation
Indices: 85905275--85905358 Score: 91
Period size: 37 Copynumber: 2.2 Consensus size: 37
85905265 AAAATATTGA
*
85905275 AAATAATAATAATAGTCTAAAAAGAAATAAAGTTAGAATA-
1 AAATAA-AATAACAGTC-AAAAAG-AATAAA-TTAGAATAG
* *
85905315 AAA-AAAATAACATTCAAAAAGGATAAATTAGAATAG
1 AAATAAAATAACAGTCAAAAAGAATAAATTAGAATAG
85905351 AAATAAAA
1 AAATAAAA
85905359 ATACAGATGA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
35 8 0.21
36 8 0.21
37 10 0.26
38 8 0.21
39 2 0.05
40 3 0.08
ACGTcount: A:0.65, C:0.04, G:0.10, T:0.21
Consensus pattern (37 bp):
AAATAAAATAACAGTCAAAAAGAATAAATTAGAATAG
Found at i:85906462 original size:25 final size:25
Alignment explanation
Indices: 85906429--85906487 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
85906419 CTTCATGAGT
*
85906429 TTTGGGTCTTGTAAGGGTTT-TTGGG
1 TTTGGGTCTTGTAA-GGTTTATTAGG
85906454 TTTGGGTCTTGTAAGGTTTATTAGG
1 TTTGGGTCTTGTAAGGTTTATTAGG
85906479 TTTGGGTCT
1 TTTGGGTCT
85906488 GCTGTAGGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 5 0.16
25 27 0.84
ACGTcount: A:0.10, C:0.05, G:0.36, T:0.49
Consensus pattern (25 bp):
TTTGGGTCTTGTAAGGTTTATTAGG
Found at i:85911914 original size:3 final size:3
Alignment explanation
Indices: 85911908--85911949 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
85911898 TTCTTTTTTC
*
85911908 TTA TTA TTA TTA TTA TTA TTA TTA TTT TTA -TA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
85911950 ATTTTCTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:85924494 original size:27 final size:27
Alignment explanation
Indices: 85924463--85924640 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
85924453 TAAATTGTAC
85924463 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
85924490 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * **
85924516 ATGCACTAAGTGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
85924544 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
85924572 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
85924599 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
85924626 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85924641 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:85924631 original size:82 final size:81
Alignment explanation
Indices: 85924460--85924640 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
85924450 GATTAAATTG
* *
85924460 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
85924525 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* ** *
85924541 TACGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
85924605 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
85924623 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
85924641 GACTCAATAT
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
81 19 0.22
82 67 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:85926798 original size:16 final size:16
Alignment explanation
Indices: 85926773--85926805 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
85926763 CCTGTGTTAA
*
85926773 ATTGATAGGTTTGCCC
1 ATTGACAGGTTTGCCC
85926789 ATTGACAGGTTTGCCC
1 ATTGACAGGTTTGCCC
85926805 A
1 A
85926806 CGATTTCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.33
Consensus pattern (16 bp):
ATTGACAGGTTTGCCC
Found at i:85938703 original size:40 final size:40
Alignment explanation
Indices: 85938625--85938842 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
85938615 AAACCAAGTA
* *
85938625 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
85938664 CCTTCGGGACTTAGCCCGGTTATAGTAACTCCCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
85938704 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
85938744 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
85938784 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
85938824 CCTGCGAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
85938843 TTATCATCCG
Statistics
Matches: 162, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
39 15 0.09
40 147 0.91
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:85943738 original size:5 final size:5
Alignment explanation
Indices: 85943728--85943773 Score: 51
Period size: 5 Copynumber: 9.0 Consensus size: 5
85943718 AGAGAAAGAA
85943728 AAATT AAATT -AA-T AAATAGT AAAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAAT--T -AAATT AAATT AAATT AAATT AAATT
85943774 GCAAGAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
3 1 0.03
4 4 0.11
5 25 0.69
6 1 0.03
7 1 0.03
8 4 0.11
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (5 bp):
AAATT
Found at i:85957093 original size:23 final size:23
Alignment explanation
Indices: 85957049--85957172 Score: 103
Period size: 23 Copynumber: 5.3 Consensus size: 23
85957039 AAGCTCCTCC
85957049 TGAGCTGATGAACAGTAAGCTCAAT
1 TGAGCTGA--AACAGTAAGCTCAAT
* *
85957074 TGAGCTGAAACGGTAAGCTCTAT
1 TGAGCTGAAACAGTAAGCTCAAT
*
85957097 CGAGCT--AACAGTAAGCTC-AT
1 TGAGCTGAAACAGTAAGCTCAAT
* **
85957117 ACGAGCTGAAATGGTAAGCTCCAA-
1 -TGAGCTGAAACAGTAAGCT-CAAT
**
85957141 TGAGCTGAAAACAGTAAGCTCTTT
1 TGAGCTG-AAACAGTAAGCTCAAT
85957165 TGAGCTGA
1 TGAGCTGA
85957173 TATATGGTAA
Statistics
Matches: 81, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
20 2 0.02
21 17 0.21
23 35 0.43
24 18 0.22
25 9 0.11
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCAAT
Found at i:85957146 original size:44 final size:45
Alignment explanation
Indices: 85957059--85957195 Score: 136
Period size: 44 Copynumber: 3.0 Consensus size: 45
85957049 TGAGCTGATG
* *
85957059 AACAGTAAGCTCA-ATTGAGCTGAAACGGTAAGCT-CTATCGAGCT-
1 AACAGTAAGCTCATA-TGAGCTGAAATGGTAAGCTCCAAT-GAGCTA
*
85957103 AACAGTAAGCTCATACGAGCTGAAATGGTAAGCTCCAATGAGCTGAA
1 AACAGTAAGCTCATATGAGCTGAAATGGTAAGCTCCAATGAGCT--A
* * * *
85957150 AACAGTAAGCTCTTTTGAGCTGATATATGGTAAGCTCAAACGAGCT
1 AACAGTAAGCTCATATGAGCTGA-A-ATGGTAAGCTCCAATGAGCT
85957196 GTGGTGAGTC
Statistics
Matches: 78, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
44 35 0.45
45 4 0.05
47 20 0.26
48 1 0.01
49 18 0.23
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (45 bp):
AACAGTAAGCTCATATGAGCTGAAATGGTAAGCTCCAATGAGCTA
Found at i:85959235 original size:17 final size:17
Alignment explanation
Indices: 85959166--85959236 Score: 54
Period size: 19 Copynumber: 3.9 Consensus size: 17
85959156 TAATAGATTT
*
85959166 AAAATATAATATATAATA
1 AAAATATAAAATAT-ATA
*
85959184 ATAAAAATAAAATATTTATA
1 A-AAATATAAAATA--TATA
* *
85959204 AGAATA-ATAATTATATA
1 AAAATATA-AAATATATA
85959221 AAAATATAAAATATAT
1 AAAATATAAAATATAT
85959237 TGGTTTAGAA
Statistics
Matches: 41, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
17 16 0.39
18 3 0.07
19 17 0.41
20 4 0.10
21 1 0.02
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (17 bp):
AAAATATAAAATATATA
Found at i:85959570 original size:13 final size:12
Alignment explanation
Indices: 85959533--85959601 Score: 54
Period size: 11 Copynumber: 5.8 Consensus size: 12
85959523 AAATGTCATA
85959533 ATAATATAAAAT
1 ATAATATAAAAT
* *
85959545 A-ATTATAATAT
1 ATAATATAAAAT
85959556 ATAATATGAAAAT
1 ATAATAT-AAAAT
*
85959569 ATATATGTAAAA-
1 ATA-ATATAAAAT
* *
85959581 ATAATACATAAT
1 ATAATATAAAAT
85959593 AT-ATATAAA
1 ATAATATAAA
85959602 TAATCAATAA
Statistics
Matches: 43, Mismatches: 10, Indels: 9
0.69 0.16 0.15
Matches are distributed among these distances:
11 19 0.44
12 10 0.23
13 11 0.26
14 3 0.07
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (12 bp):
ATAATATAAAAT
Found at i:85959603 original size:17 final size:17
Alignment explanation
Indices: 85959576--85959621 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
85959566 AATATATATG
*
85959576 TAAAAATAATACAT-AA
1 TAAATATAATACATCAA
*
85959592 TATATATAAATA-ATCAA
1 TAAATAT-AATACATCAA
85959609 TAAATATAATACA
1 TAAATATAATACA
85959622 AGTAAAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
16 11 0.46
17 13 0.54
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAATATAATACATCAA
Found at i:85959603 original size:58 final size:60
Alignment explanation
Indices: 85959488--85959619 Score: 150
Period size: 58 Copynumber: 2.2 Consensus size: 60
85959478 TTTTAATGAT
* *
85959488 AATAATATATAGATAAAAAATATATAATGGTATAAAAATGTCATAATAATATAAAATAAT-
1 AATAATATATA-ATAAAAAATATATAATGGTAAAAAAATGACATAATAATATAAAATAATC
* *
85959548 TATAATATATAATATGAAAATATAT-AT-GTAAAAATAAT-ACATAAT-ATATATAAATAATC
1 AATAATATATAATA-AAAAATATATAATGGTAAAAA-AATGACATAATAATATA-AAATAATC
85959607 AATAA-ATATAATA
1 AATAATATATAATA
85959620 CAAGTAAAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
57 5 0.08
58 27 0.43
59 12 0.19
60 19 0.30
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (60 bp):
AATAATATATAATAAAAAATATATAATGGTAAAAAAATGACATAATAATATAAAATAATC
Found at i:85959730 original size:15 final size:15
Alignment explanation
Indices: 85959631--85959736 Score: 67
Period size: 14 Copynumber: 7.0 Consensus size: 15
85959621 AAGTAAAAAT
*
85959631 ATAACAATAATATATAA
1 ATAA-AATAATGTAT-A
*
85959648 ATAATAATAATGTAAA
1 ATAA-AATAATGTATA
* * *
85959664 ATAATAATAATTTGTG
1 ATAA-AATAATGTATA
*
85959680 A-AAAATAATATATA
1 ATAAAATAATGTATA
85959694 AT-AAATAATG-ATA
1 ATAAAATAATGTATA
* *
85959707 ATATGAATAGTGTATA
1 ATA-AAATAATGTATA
85959723 ATAAAATAAT-TATA
1 ATAAAATAATGTATA
85959737 TAATATATAA
Statistics
Matches: 70, Mismatches: 15, Indels: 11
0.73 0.16 0.11
Matches are distributed among these distances:
13 5 0.07
14 20 0.29
15 13 0.19
16 20 0.29
17 12 0.17
ACGTcount: A:0.58, C:0.01, G:0.07, T:0.34
Consensus pattern (15 bp):
ATAAAATAATGTATA
Found at i:85961076 original size:4 final size:4
Alignment explanation
Indices: 85961067--85961104 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
85961057 GACTGTTAAA
*
85961067 TATT TATT TATT TATT TATT TATT T-TT TGTTT TATT TA
1 TATT TATT TATT TATT TATT TATT TATT T-ATT TATT TA
85961105 AGCACGGTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
3 3 0.10
4 25 0.81
5 3 0.10
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:85961748 original size:205 final size:206
Alignment explanation
Indices: 85961307--85961860 Score: 846
Period size: 205 Copynumber: 2.7 Consensus size: 206
85961297 AAATCTGCTT
* * * **
85961307 CTTCGATTTGTTCTCTAACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCATCATATGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTAATCATAAACAC
* * *
85961372 GTGAAAGCCAAATCAGTTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
** * * *
85961437 GGATCTTGCTTCAGTGAAATTATCTGAAGGTGAGATCTGTTATGTATCTACTCCCCGTTAAAGTG
131 GGATCTTGCTTCAGTGAAAACATCTGAAGGTGAGATCTGCTATGTATCTACTACCCGTCAAAGTG
85961502 GAGATGCCAGA
196 GAGATGCCAGA
*
85961513 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTATATTTGCTTAATCATAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTAATCATAAACAC
* * *
85961578 GTGAAAGCCAAATCAGCTATGTCTTTGATTCGCTCCTTGTAGGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * *
85961643 GGAT-ATGCTTCAGT-ATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTACCCGTCGAAGT
131 GGATCTTGCTTCAGTGA-AAACATCTGAAGGTGAGATCTGCTATGTATCTACTACCCGTCAAAGT
85961706 GGAGATGCCAGA
195 GGAGATGCCAGA
*
85961718 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTACTTCAA-CATAAACA
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTT-AATCATAAACA
* *
85961782 CGTGAAAGCCAAATCAGCTATGTC-TTCAGTTTGTTCCTTGTAAGCACAAGGATGCCAAACCATC
65 CGTGAAAGCCAAATCAGCTATGTCTTTGA-TTTGTTCCTTGTAAGCACAAGGATGCCAAATCATC
85961846 TTGGATCTTGCTTCA
129 TTGGATCTTGCTTCA
85961861 ACCAGATCTG
Statistics
Matches: 316, Mismatches: 28, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
204 4 0.01
205 181 0.57
206 131 0.41
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTAATCATAAACAC
GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
GGATCTTGCTTCAGTGAAAACATCTGAAGGTGAGATCTGCTATGTATCTACTACCCGTCAAAGTG
GAGATGCCAGA
Found at i:85974112 original size:20 final size:18
Alignment explanation
Indices: 85974067--85974131 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 18
85974057 ATAATAATAT
85974067 ATAA-ATAAAAAATATATA
1 ATAATATAAAAAAT-TATA
**
85974085 ATGTTATAAAAAATGTCATA
1 ATAATATAAAAAAT-T-ATA
85974105 ATAATATAAAATAATTATA
1 ATAATATAAAA-AATTATA
85974124 AT-ATATAA
1 ATAATATAA
85974132 TATGAAAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
18 8 0.21
19 15 0.38
20 13 0.33
21 3 0.08
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.34
Consensus pattern (18 bp):
ATAATATAAAAAATTATA
Found at i:85974130 original size:61 final size:60
Alignment explanation
Indices: 85974060--85974179 Score: 149
Period size: 61 Copynumber: 2.0 Consensus size: 60
85974050 TTTAATGATA
*
85974060 ATAATATATAA-ATAAAAAATATATAATGTTATAAAA-AATGTCATAATA-ATATA-AAATAATT
1 ATAATATATAATAT-AAAAATATAT-ATG-TA-AAAATAAT-ACATAATATATATATAAATAATT
*
85974121 ATAATATATAATATGAAAATATATATGTAAAAATAATACATAATATATATATAAATAAT
1 ATAATATATAATATAAAAATATATATGTAAAAATAATACATAATATATATATAAATAAT
85974180 CAATAAATAT
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
58 11 0.21
59 10 0.19
60 10 0.19
61 20 0.38
62 2 0.04
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (60 bp):
ATAATATATAATATAAAAATATATATGTAAAAATAATACATAATATATATATAAATAATT
Found at i:85974142 original size:13 final size:12
Alignment explanation
Indices: 85974105--85974175 Score: 56
Period size: 13 Copynumber: 5.8 Consensus size: 12
85974095 AAATGTCATA
85974105 ATAATATAAAAT
1 ATAATATAAAAT
* *
85974117 A-ATTATAATAT
1 ATAATATAAAAT
85974128 ATAATATGAAAAT
1 ATAATAT-AAAAT
*
85974141 ATATATGTAAAA-
1 ATA-ATATAAAAT
* *
85974153 ATAATACATAAT
1 ATAATATAAAAT
85974165 ATATATATAAA
1 ATA-ATATAAA
85974176 TAATCAATAA
Statistics
Matches: 44, Mismatches: 10, Indels: 9
0.70 0.16 0.14
Matches are distributed among these distances:
11 14 0.32
12 11 0.25
13 16 0.36
14 3 0.07
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (12 bp):
ATAATATAAAAT
Found at i:85974184 original size:26 final size:24
Alignment explanation
Indices: 85974138--85974326 Score: 81
Period size: 23 Copynumber: 7.8 Consensus size: 24
85974128 ATAATATGAA
* *
85974138 AATATATATGTAAAAATAATACAT
1 AATATATATATAAAAATAATAAAT
85974162 AATATATATATAAATAATCAATAAAT
1 AATATATATATAAA-AAT-AATAAAT
* *
85974188 ATTATACA-AGTAAAAAT-ATAACAAT
1 AATATATATA-TAAAAATAAT-A-AAT
* *
85974213 AATATA-A-ATAATAAT-GTAAAAT
1 AATATATATATAAAAATAAT-AAAT
* * *
85974235 AATAATAATTTGTGAAAAATAATATAT
1 AAT-AT-ATATAT-AAAAATAATAAAT
* * * *
85974262 AATAAATA-ATGATAAT-ATGAAT
1 AATATATATATAAAAATAATAAAT
* *
85974284 AGTATATA-AT-AAAATAATTATAT
1 AATATATATATAAAAATAA-TAAAT
85974307 AATATATAATATAAAAATAA
1 AATATAT-ATATAAAAATAA
85974327 GGTTAAAAAT
Statistics
Matches: 124, Mismatches: 25, Indels: 30
0.69 0.14 0.17
Matches are distributed among these distances:
21 4 0.03
22 19 0.15
23 26 0.21
24 19 0.15
25 19 0.15
26 25 0.20
27 11 0.09
28 1 0.01
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (24 bp):
AATATATATATAAAAATAATAAAT
Found at i:85974185 original size:22 final size:21
Alignment explanation
Indices: 85974141--85974193 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
85974131 ATATGAAAAT
*
85974141 ATATATGTAAAAATAATACATA
1 ATATAT-TATAAATAATACATA
85974163 ATATATATATAAATAAT-CAATA
1 ATATAT-TATAAATAATAC-ATA
85974185 A-ATATTATA
1 ATATATTATA
85974194 CAAGTAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 4 0.14
21 5 0.18
22 19 0.68
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (21 bp):
ATATATTATAAATAATACATA
Found at i:85974238 original size:22 final size:22
Alignment explanation
Indices: 85974102--85974322 Score: 95
Period size: 25 Copynumber: 9.6 Consensus size: 22
85974092 AAAAAATGTC
85974102 ATAATAATATAAAATAAT-TATA
1 ATAATAATATAAAATAATATA-A
85974124 ATATATAATATGAAAATATATATGTAA
1 ATA-ATAATAT-AAAATA-ATA--TAA
*
85974151 A-AATAATACATAATATATATATAA
1 ATAATAAT--ATAAAATA-ATATAA
* *
85974175 ATAATCA-AT-AAATATTATACA
1 ATAATAATATAAAATAATATA-A
*
85974196 AGTAAAAATATAACAATAATATAA
1 A-TAATAATATAA-AATAATATAA
*
85974220 ATAATAATGTAAAAT-A-AT-A
1 ATAATAATATAAAATAATATAA
* *
85974239 ATAAT-TTGTGAAAAATAATAT--
1 ATAATAATAT--AAAATAATATAA
* *
85974260 ATAATAA-ATAATGATAATATGA
1 ATAATAATATAA-AATAATATAA
*
85974282 ATAGTATATAATAAAATAATTATATA
1 ATAATA-AT-ATAAAATAA-TATA-A
85974308 ATATATAATATAAAA
1 ATA-ATAATATAAAA
85974323 ATAAGGTTAA
Statistics
Matches: 154, Mismatches: 17, Indels: 53
0.69 0.08 0.24
Matches are distributed among these distances:
18 3 0.02
19 8 0.05
20 18 0.12
21 14 0.09
22 19 0.12
23 19 0.12
24 17 0.11
25 32 0.21
26 16 0.10
27 6 0.04
28 2 0.01
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (22 bp):
ATAATAATATAAAATAATATAA
Found at i:85974239 original size:20 final size:21
Alignment explanation
Indices: 85974216--85974266 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
85974206 TAACAATAAT
85974216 ATAAATAATAATGT-AAAATA
1 ATAAATAATAATGTAAAAATA
*
85974236 AT-AATAAT-TTGTGAAAAATA
1 ATAAATAATAATGT-AAAAATA
*
85974256 ATATATAATAA
1 ATAAATAATAA
85974267 ATAATGATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 6
0.73 0.09 0.18
Matches are distributed among these distances:
18 3 0.12
19 6 0.25
20 10 0.42
21 5 0.21
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (21 bp):
ATAAATAATAATGTAAAAATA
Found at i:85974305 original size:16 final size:15
Alignment explanation
Indices: 85974104--85974319 Score: 73
Period size: 16 Copynumber: 14.6 Consensus size: 15
85974094 AAAATGTCAT
*
85974104 AATAATATAAAATAA
1 AATAATATATAATAA
* *
85974119 TTATAATATATAATATG
1 -AATAATATATAATA-A
*
85974136 AA-AATATATATGTAAA
1 AATAATATATA-AT-AA
*
85974152 AATAATACATAAT-A
1 AATAATATATAATAA
*
85974166 TAT-ATATA-AATAA
1 AATAATATATAATAA
*
85974179 TCAATAA-ATATTATACA
1 --AATAATATATAATA-A
* *
85974196 AGTAA-AAAT-ATAA
1 AATAATATATAATAA
85974209 CAATAATATA-AAT--
1 -AATAATATATAATAA
* *
85974222 AATAATGTAAAATAA
1 AATAATATATAATAA
* * *
85974237 TAATAATTTGTGA-AA
1 -AATAATATATAATAA
85974252 AATAATATATAAT-A
1 AATAATATATAATAA
* *
85974266 AATAAT-GATAATATG
1 AATAATATATAATA-A
*
85974281 AATAGTATATAATAA
1 AATAATATATAATAA
85974296 AATAATTATATAAT-A
1 AATAA-TATATAATAA
*
85974311 TATAATATA
1 AATAATATA
85974320 AAAATAAGGT
Statistics
Matches: 147, Mismatches: 31, Indels: 46
0.66 0.14 0.21
Matches are distributed among these distances:
12 11 0.07
13 14 0.10
14 30 0.20
15 40 0.27
16 43 0.29
17 9 0.06
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (15 bp):
AATAATATATAATAA
Found at i:85977562 original size:47 final size:47
Alignment explanation
Indices: 85977469--85977602 Score: 147
Period size: 47 Copynumber: 3.0 Consensus size: 47
85977459 CGATATCTAG
* * *
85977469 CACACTAAGTACAGTATATAGCCGAAGCTATCTCAAATTGTACACTA
1 CACACTAAGTACAGTATATAGCCAAAGCTATCTCAAATCGCACACTA
* * *
85977516 CACACTAAGTGCAGTATATAGCCAAAGCTATCTTAAATCGCGCACT-
1 CACACTAAGTACAGTATATAGCCAAAGCTATCTCAAATCGCACACTA
* *
85977562 -A-AGT--GT-C-GTACATAGCCAAAGCTATCTCAAATCGCACACTA
1 CACACTAAGTACAGTATATAGCCAAAGCTATCTCAAATCGCACACTA
85977603 AGTGCCATAT
Statistics
Matches: 76, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
40 30 0.39
41 1 0.01
42 2 0.03
44 2 0.03
45 1 0.01
47 40 0.53
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.24
Consensus pattern (47 bp):
CACACTAAGTACAGTATATAGCCAAAGCTATCTCAAATCGCACACTA
Found at i:85977617 original size:40 final size:39
Alignment explanation
Indices: 85977516--85977618 Score: 143
Period size: 40 Copynumber: 2.6 Consensus size: 39
85977506 TTGTACACTA
*
85977516 CACACTAAGTGCAGTATATAGCCAAAGCTATCTTAAATCG
1 CACACTAAGTGCA-TATATAGCCAAAGCTATCTCAAATCG
* * *
85977556 CGCACTAAGTGTCGTACATAGCCAAAGCTATCTCAAATCG
1 CACACTAAGTG-CATATATAGCCAAAGCTATCTCAAATCG
85977596 CACACTAAGTGCCATATATAGCC
1 CACACTAAGTG-CATATATAGCC
85977619 GATTTGTCAT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
40 53 0.98
41 1 0.02
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (39 bp):
CACACTAAGTGCATATATAGCCAAAGCTATCTCAAATCG
Found at i:85977879 original size:16 final size:17
Alignment explanation
Indices: 85977858--85977889 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
85977848 AATTTAGCCT
85977858 AAAATTTACA-ATTTGG
1 AAAATTTACACATTTGG
85977874 AAAATTTACACATTTG
1 AAAATTTACACATTTG
85977890 CCCTTAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (17 bp):
AAAATTTACACATTTGG
Found at i:85979570 original size:26 final size:26
Alignment explanation
Indices: 85979540--85979609 Score: 104
Period size: 26 Copynumber: 2.7 Consensus size: 26
85979530 TTTTAATAAT
* *
85979540 TGGGGCAAAAGCCCTTTTCCGTCAGC
1 TGGGGCATAAGCCCTTTTCCGTCAAC
* *
85979566 TGGGGCATAAGCCCTTTTCGGTGAAC
1 TGGGGCATAAGCCCTTTTCCGTCAAC
85979592 TGGGGCATAAGCCCTTTT
1 TGGGGCATAAGCCCTTTT
85979610 GCACTTCCTC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.27
Consensus pattern (26 bp):
TGGGGCATAAGCCCTTTTCCGTCAAC
Found at i:85979684 original size:20 final size:20
Alignment explanation
Indices: 85979659--85979725 Score: 118
Period size: 20 Copynumber: 3.4 Consensus size: 20
85979649 TTATGAATAC
85979659 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
85979679 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
85979699 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
85979719 ATCATGT
1 ATCATGT
85979726 ATATCAAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 44 0.96
21 2 0.04
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:85979690 original size:11 final size:11
Alignment explanation
Indices: 85979659--85979714 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
85979649 TTATGAATAC
85979659 ATCATGTGCAT
1 ATCATGTGCAT
*
85979670 ATCA--TACAT
1 ATCATGTGCAT
85979679 ATCATGTGCAT
1 ATCATGTGCAT
*
85979690 ATCA--TACAT
1 ATCATGTGCAT
85979699 ATCATGTGCAT
1 ATCATGTGCAT
85979710 ATCAT
1 ATCAT
85979715 ATCAATCATG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:85979731 original size:9 final size:10
Alignment explanation
Indices: 85979659--85979731 Score: 64
Period size: 9 Copynumber: 7.4 Consensus size: 10
85979649 TTATGAATAC
85979659 ATCATGTGCAT
1 ATCATGT-CAT
*
85979670 ATCAT-ACAT
1 ATCATGTCAT
85979679 ATCATGTGCAT
1 ATCATGT-CAT
*
85979690 ATCAT-ACAT
1 ATCATGTCAT
85979699 ATCATGTGCAT
1 ATCATGT-CAT
*
85979710 ATCATATCA-
1 ATCATGTCAT
85979719 ATCATGT-AT
1 ATCATGTCAT
85979728 ATCA
1 ATCA
85979732 AAATCCCATG
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
8 1 0.02
9 26 0.51
10 2 0.04
11 22 0.43
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36
Consensus pattern (10 bp):
ATCATGTCAT
Found at i:85980233 original size:8 final size:8
Alignment explanation
Indices: 85980220--85980247 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
85980210 AAATGCCAGA
85980220 ATTTCGGC
1 ATTTCGGC
85980228 ATTTCGGC
1 ATTTCGGC
85980236 ATTTCGGC
1 ATTTCGGC
85980244 ATTT
1 ATTT
85980248 ATCAATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43
Consensus pattern (8 bp):
ATTTCGGC
Found at i:85987670 original size:26 final size:26
Alignment explanation
Indices: 85987636--85987702 Score: 116
Period size: 26 Copynumber: 2.6 Consensus size: 26
85987626 TAATAAATGG
*
85987636 GGCAAAAGCCCTTTTCGGTAAACTGA
1 GGCATAAGCCCTTTTCGGTAAACTGA
*
85987662 GGCATAAGCCCTTTTCGGTAAACTGG
1 GGCATAAGCCCTTTTCGGTAAACTGA
85987688 GGCATAAGCCCTTTT
1 GGCATAAGCCCTTTT
85987703 GCACTTCCTC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
GGCATAAGCCCTTTTCGGTAAACTGA
Found at i:85987777 original size:20 final size:20
Alignment explanation
Indices: 85987752--85987798 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
85987742 TTATGAATAC
85987752 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
85987771 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
85987792 ATCATGT
1 ATCATGT
85987799 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:85996854 original size:27 final size:27
Alignment explanation
Indices: 85996816--85997364 Score: 539
Period size: 27 Copynumber: 20.6 Consensus size: 27
85996806 TACACTACAA
85996816 GGTATTTCGATAATTTTACAAATC-AG
1 GGTATTTCGATAATTTTACAAATCGAG
* * *
85996842 TGGTGTTTCGATAATTTTAAAAATCGAA
1 -GGTATTTCGATAATTTTACAAATCGAG
*
85996870 GGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
* *
85996897 GGTATTT-TAGTAATTTCAC-AATCGAG
1 GGTATTTCGA-TAATTTTACAAATCGAG
* * * *
85996923 GGTATTTTGGTAATTTTACAAATTGGG
1 GGTATTTCGATAATTTTACAAATCGAG
85996950 GGTATTTCGATAATTTTACAAA-CTGAG
1 GGTATTTCGATAATTTTACAAATC-GAG
* *
85996977 GGTGTTTCGGTAATTTT-CAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
* * *
85997003 GGTGTTTTGGTAATTTTACAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
* * * *
85997030 GGTGTTGCGGTAATTTCACAAATC-A-
1 GGTATTTCGATAATTTTACAAATCGAG
* * *
85997055 GGTATTTCGGTAATTTTACAAATCAAA
1 GGTATTTCGATAATTTTACAAATCGAG
* *
85997082 GGTATTTCAATAATTTCA-AAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
* *
85997108 GGTATTTCAATAATTTTACAAATCAAG
1 GGTATTTCGATAATTTTACAAATCGAG
* * * *
85997135 GGTGTTTCGTTAATTTCACAAATTGAG
1 GGTATTTCGATAATTTTACAAATCGAG
* * * *
85997162 GGTGTTTCGGTAATTTTACAAATTGAA
1 GGTATTTCGATAATTTTACAAATCGAG
* * *
85997189 GGTGTTTCAATAATTTCACAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
*
85997216 GGTATTTC-AGTAATTTTACAAATTGAG
1 GGTATTTCGA-TAATTTTACAAATCGAG
* *
85997243 GGTATTTC-AGTAATTTCA-AAACCGAG
1 GGTATTTCGA-TAATTTTACAAATCGAG
*
85997269 GGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
* * *
85997296 GGTATTT-TAGTAATTTCAC-AATTGAG
1 GGTATTTCGA-TAATTTTACAAATCGAG
*
85997322 GGTATTTCAATAATTTTACAAATCGAG
1 GGTATTTCGATAATTTTACAAATCGAG
*
85997349 GGTGTTTCGATAATTT
1 GGTATTTCGATAATTT
85997365 CTCTTTATTA
Statistics
Matches: 439, Mismatches: 67, Indels: 32
0.82 0.12 0.06
Matches are distributed among these distances:
25 21 0.05
26 113 0.26
27 304 0.69
28 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
GGTATTTCGATAATTTTACAAATCGAG
Found at i:85996937 original size:53 final size:54
Alignment explanation
Indices: 85996816--85997365 Score: 573
Period size: 53 Copynumber: 10.3 Consensus size: 54
85996806 TACACTACAA
* * * * *
85996816 GGTATTTCGATAATTTTACAAATC-AGTGGTGTTTC-GATAATTTTAAAAATCGAA
1 GGTATTTCGGTAATTTCACAAATCGAG-GGTATTTCAG-TAATTTTACAAATCGAG
* * *
85996870 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC-AATCGAG
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
* * * *
85996923 GGTATTTTGGTAATTTTACAAATTGGGGGTATTTC-GATAATTTTACAAA-CTGAG
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAG-TAATTTTACAAATC-GAG
* * * **
85996977 GGTGTTTCGGTAATTT-TCAAATCGAGGGTGTTTTGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
* * * * *
85997030 GGTGTTGCGGTAATTTCACAAATC-A-GGTATTTCGGTAATTTTACAAATCAAA
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
** * *
85997082 GGTATTTCAATAATTTCA-AAATCGAGGGTATTTCAATAATTTTACAAATCAAG
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
* * * * * * *
85997135 GGTGTTTCGTTAATTTCACAAATTGAGGGTGTTTCGGTAATTTTACAAATTGAA
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
* ** *
85997189 GGTGTTTCAATAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
* * *
85997243 GGTATTTCAGTAATTTCA-AAACCGAGGGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
** * *
85997296 GGTATTTTAGTAATTTCAC-AATTGAGGGTATTTCAATAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
* *
85997349 GGTGTTTCGATAATTTC
1 GGTATTTCGGTAATTTC
85997366 TCTTTATTAT
Statistics
Matches: 423, Mismatches: 61, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
51 5 0.01
52 39 0.09
53 221 0.52
54 155 0.37
55 3 0.01
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (54 bp):
GGTATTTCGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAG
Found at i:85996937 original size:80 final size:81
Alignment explanation
Indices: 85996816--85997364 Score: 555
Period size: 80 Copynumber: 6.9 Consensus size: 81
85996806 TACACTACAA
* * * *
85996816 GGTATTTC-GATAATTTTACAAATC-AGTGGTGTTTC-GATAATTTTAAAAATCGAAGGTATTTC
1 GGTATTTCAG-TAATTTCACAAATCGAG-GGTATTTCAG-TAATTTTACAAATCGAGGGTATTTC
*
85996878 GGTAATTTTACAAATCGAG
63 GATAATTTTACAAATCGAG
* ** * *
85996897 GGTATTTTAGTAATTTCAC-AATCGAGGGTATTTTGGTAATTTTACAAATTGGGGGTATTTCGAT
1 GGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGAT
85996961 AATTTTACAAA-CTGAG
66 AATTTTACAAATC-GAG
* * * * ** * * *
85996977 GGTGTTTCGGTAATTT-TCAAATCGAGGGTGTTTTGGTAATTTTACAAATCGAGGGTGTTGCGGT
1 GGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGAT
*
85997041 AATTTCACAAATC-A-
66 AATTTTACAAATCGAG
* * * * * * *
85997055 GGTATTTCGGTAATTTTACAAATCAAAGGTATTTCAATAATTTCA-AAATCGAGGGTATTTCAAT
1 GGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGAT
*
85997119 AATTTTACAAATCAAG
66 AATTTTACAAATCGAG
* * * * * * * *
85997135 GGTGTTTC-GTTAATTTCACAAATTGAGGGTGTTTCGGTAATTTTACAAATTGAAGGTGTTTCAA
1 GGTATTTCAG-TAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGA
*
85997199 TAATTTCACAAATCGAG
65 TAATTTTACAAATCGAG
* * * * *
85997216 GGTATTTCAGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCA-AAACCGAGGGTATTTCGGT
1 GGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGAT
85997280 AATTTTACAAATCGAG
66 AATTTTACAAATCGAG
* * * *
85997296 GGTATTTTAGTAATTTCAC-AATTGAGGGTATTTCAATAATTTTACAAATCGAGGGTGTTTCGAT
1 GGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGAT
85997360 AATTT
66 AATTT
85997365 CTCTTTATTA
Statistics
Matches: 388, Mismatches: 67, Indels: 27
0.80 0.14 0.06
Matches are distributed among these distances:
78 42 0.11
79 48 0.12
80 209 0.54
81 87 0.22
82 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (81 bp):
GGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGAT
AATTTTACAAATCGAG
Found at i:86000766 original size:56 final size:55
Alignment explanation
Indices: 86000656--86000783 Score: 211
Period size: 56 Copynumber: 2.3 Consensus size: 55
86000646 ACATTTTGGA
*
86000656 GTTGGCATCGATATGTGATTCCGATATGGTGTGCGAGCAAGACCACGTTTAATAC
1 GTTGGCATCAATATGTGATTCCGATATGGTGTGCGAGCAAGACCACGTTTAATAC
* *
86000711 GTTGGCATCAATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
1 GTTGGCATCAATATGTGATTCCGATATG-GTGTGCGAGCAAGACCACGTTTAATAC
*
86000767 ATTGGCATCAATATGTG
1 GTTGGCATCAATATGTG
86000784 TTTACGAGTA
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
55 26 0.38
56 42 0.62
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (55 bp):
GTTGGCATCAATATGTGATTCCGATATGGTGTGCGAGCAAGACCACGTTTAATAC
Found at i:86002457 original size:37 final size:37
Alignment explanation
Indices: 86002407--86002485 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
86002397 TTATTACGAA
* * *
86002407 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
86002444 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
86002481 GTCTT
1 GTCTT
86002486 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:86002674 original size:47 final size:47
Alignment explanation
Indices: 86002604--86002889 Score: 491
Period size: 47 Copynumber: 6.1 Consensus size: 47
86002594 CCCTTCGGGA
** * * *
86002604 CTTATCACATTTATGCACCTTCACATTCATCACATCGGCTATTACGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
86002651 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
86002698 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
86002745 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
86002792 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
86002839 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
86002886 CTTA
1 CTTA
86002890 CTATCATTTC
Statistics
Matches: 230, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 230 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:86021771 original size:82 final size:82
Alignment explanation
Indices: 86021634--86021801 Score: 336
Period size: 82 Copynumber: 2.0 Consensus size: 82
86021624 TTTACTCCAT
86021634 AATCTTCGACTTCCCTCTATCTAAGTCTAAATTCCTCTTTTCTTGATCTATATTTATTCAAAATT
1 AATCTTCGACTTCCCTCTATCTAAGTCTAAATTCCTCTTTTCTTGATCTATATTTATTCAAAATT
86021699 AACCCATTTATTCACCA
66 AACCCATTTATTCACCA
86021716 AATCTTCGACTTCCCTCTATCTAAGTCTAAATTCCTCTTTTCTTGATCTATATTTATTCAAAATT
1 AATCTTCGACTTCCCTCTATCTAAGTCTAAATTCCTCTTTTCTTGATCTATATTTATTCAAAATT
86021781 AACCCATTTATTCACCA
66 AACCCATTTATTCACCA
86021798 AATC
1 AATC
86021802 ACTCAAAACA
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 86 1.00
ACGTcount: A:0.29, C:0.26, G:0.04, T:0.42
Consensus pattern (82 bp):
AATCTTCGACTTCCCTCTATCTAAGTCTAAATTCCTCTTTTCTTGATCTATATTTATTCAAAATT
AACCCATTTATTCACCA
Found at i:86024398 original size:30 final size:30
Alignment explanation
Indices: 86024364--86024446 Score: 87
Period size: 30 Copynumber: 2.8 Consensus size: 30
86024354 TAAACTAAAA
*
86024364 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAACTCGTGAGCTAAAGT
* * * * *
86024394 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAACTCGTGAGCTAAAGT
*
86024424 TGAGCTAAGGTTTAACTCGTGAG
1 TGAGCTAAGCTTTAACTCGTGAG
86024447 TTGAAAGTGA
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
29 2 0.05
30 35 0.88
31 3 0.08
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAACTCGTGAGCTAAAGT
Found at i:86026616 original size:30 final size:29
Alignment explanation
Indices: 86026571--86026642 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 29
86026561 TTCTTTTGTT
*
86026571 TCAATTTCTTTTTCA-TCTTCTTTTTCACTC
1 TCAATTTC-TTTTCATTC-TCTTTTTCAATC
86026601 TCAAATTTCTTTTCATTCTCTTTTTCAATC
1 TC-AATTTCTTTTCATTCTCTTTTTCAATC
*
86026631 TCATTTTCTTTT
1 TCAATTTCTTTT
86026643 TTCTTTTCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
29 9 0.24
30 21 0.55
31 8 0.21
ACGTcount: A:0.15, C:0.24, G:0.00, T:0.61
Consensus pattern (29 bp):
TCAATTTCTTTTCATTCTCTTTTTCAATC
Found at i:86026661 original size:12 final size:12
Alignment explanation
Indices: 86026646--86026676 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
86026636 TTCTTTTTTC
86026646 TTTTCAAAGGCT
1 TTTTCAAAGGCT
86026658 TTTTCAAAGGCT
1 TTTTCAAAGGCT
86026670 TTTTCAA
1 TTTTCAA
86026677 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:86026747 original size:6 final size:6
Alignment explanation
Indices: 86026736--86026785 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
86026726 TTTTTTTTTA
*
86026736 TTTCTT TTTCTT TTTCTTCT TTTGCTT TTGCTT TTTC-T TTTC-T TTTCTT
1 TTTCTT TTTCTT TTTC-T-T TTT-CTT TTTCTT TTTCTT TTTCTT TTTCTT
86026785 T
1 T
86026786 GTTTTCTCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
5 10 0.26
6 18 0.47
7 4 0.11
8 5 0.13
9 1 0.03
ACGTcount: A:0.00, C:0.18, G:0.04, T:0.78
Consensus pattern (6 bp):
TTTCTT
Found at i:86026786 original size:21 final size:22
Alignment explanation
Indices: 86026736--86026785 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
86026726 TTTTTTTTTA
*
86026736 TTTCTTTTTCTTTTTC--TTCT
1 TTTCTTTTGCTTTTTCTTTTCT
86026756 TTTGCTTTTGCTTTTTCTTTTCT
1 TTT-CTTTTGCTTTTTCTTTTCT
86026779 TTTCTTT
1 TTTCTTT
86026786 GTTTTCTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 3 0.12
21 12 0.46
22 4 0.15
23 7 0.27
ACGTcount: A:0.00, C:0.18, G:0.04, T:0.78
Consensus pattern (22 bp):
TTTCTTTTGCTTTTTCTTTTCT
Found at i:86026786 original size:27 final size:26
Alignment explanation
Indices: 86026739--86026790 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
86026729 TTTTTTATTT
86026739 CTTTTTCTTTTTCTTCTTTTGCTTTTG
1 CTTTTTCTTTTTCTTCTTTTG-TTTTG
*
86026766 CTTTTTC-TTTTCTTTTCTTTGTTTT
1 CTTTTTCTTTTTCTTCT-TTTGTTTT
86026791 CTCTTTACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.00, C:0.17, G:0.06, T:0.77
Consensus pattern (26 bp):
CTTTTTCTTTTTCTTCTTTTGTTTTG
Found at i:86030947 original size:18 final size:18
Alignment explanation
Indices: 86030926--86030963 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
86030916 ACATGACATA
*
86030926 CACTGTTTACTGTTACTG
1 CACTATTTACTGTTACTG
*
86030944 CACTATTTATTGTTACTG
1 CACTATTTACTGTTACTG
86030962 CA
1 CA
86030964 ATGGGCCAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.45
Consensus pattern (18 bp):
CACTATTTACTGTTACTG
Found at i:86038001 original size:27 final size:27
Alignment explanation
Indices: 86037963--86038030 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
86037953 AGCATGGCTG
* *
86037963 CCAGAATAGATAAT-GTGACAGAATCA
1 CCAGAACAGATAATCGTGACAGAACCA
* *
86037989 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATCGTGACAGAACCA
86038017 CCAGAACAGATAAT
1 CCAGAACAGATAAT
86038031 TTGTGGCATA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 5 0.14
27 17 0.47
28 14 0.39
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATCGTGACAGAACCA
Found at i:86038018 original size:28 final size:26
Alignment explanation
Indices: 86037963--86038048 Score: 91
Period size: 28 Copynumber: 3.2 Consensus size: 26
86037953 AGCATGGCTG
* * **
86037963 CCAGAATAGATAATGTGACAGAATCA
1 CCAGAACAGATAATGTGGCAGAGCCA
86037989 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
86038017 CCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
86038045 CCAG
1 CCAG
86038049 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
26 5 0.10
27 16 0.31
28 29 0.57
29 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:86045835 original size:27 final size:26
Alignment explanation
Indices: 86045781--86045885 Score: 120
Period size: 27 Copynumber: 3.8 Consensus size: 26
86045771 TGCCAAAACT
* * *
86045781 GATAATGTGACAGAGTCACTAGATACA
1 GATAATGTGGCAGAGCCACCAGA-ACA
86045808 GATAATCGTGGCAGAGCCACCAGAACA
1 GATAAT-GTGGCAGAGCCACCAGAACA
*
86045835 GATATATGTGGCAGAGCCACCAGATCA
1 GATA-ATGTGGCAGAGCCACCAGAACA
*
86045862 GATAATTTGTGGCATAGCCACCAG
1 GATAA--TGTGGCAGAGCCACCAG
86045886 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
26 1 0.01
27 36 0.52
28 32 0.46
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (26 bp):
GATAATGTGGCAGAGCCACCAGAACA
Found at i:86045874 original size:55 final size:54
Alignment explanation
Indices: 86045781--86045885 Score: 140
Period size: 55 Copynumber: 1.9 Consensus size: 54
86045771 TGCCAAAACT
* *
86045781 GATAATGTGACAGAGTCACTAGATACAGATAATCGTGGCAGAGCCACCAGAACA
1 GATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAGAACA
* * *
86045835 GATATATGTGGCAGAGCCACCAGAT-CAGATAATTTGTGGCATAGCCACCAG
1 GATA-ATGTGACAGAGCCACCAGATACAGATAA-TCGTGGCAGAGCCACCAG
86045886 GACGCTTCCT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
54 11 0.25
55 33 0.75
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (54 bp):
GATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAGAACA
Found at i:86045881 original size:28 final size:28
Alignment explanation
Indices: 86045786--86045885 Score: 114
Period size: 28 Copynumber: 3.6 Consensus size: 28
86045776 AAACTGATAA
* * *
86045786 TGTGACAGAGTCACTAGATACAGATAA-T
1 TGTGGCAGAGCCACCAGAT-CAGATAATT
* * *
86045814 CGTGGCAGAGCCACCAGAACAGAT-ATA
1 TGTGGCAGAGCCACCAGATCAGATAATT
86045841 TGTGGCAGAGCCACCAGATCAGATAATT
1 TGTGGCAGAGCCACCAGATCAGATAATT
*
86045869 TGTGGCATAGCCACCAG
1 TGTGGCAGAGCCACCAG
86045886 GACGCTTCCT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 1 0.02
27 27 0.45
28 32 0.53
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (28 bp):
TGTGGCAGAGCCACCAGATCAGATAATT
Done.