Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 255 of 373
Found at i:86516167 original size:25 final size:25
Alignment explanation
Indices: 86516139--86516216 Score: 68
Period size: 25 Copynumber: 3.0 Consensus size: 25
86516129 TTTTTAGGAA
86516139 TTGTTTTATTATTATTTTTTTAAGT
1 TTGTTTTATTATTATTTTTTTAAGT
* *
86516164 TTGTTTTCTTATATTATTTATTTTAA-A
1 TTGTTTT-AT-TATTATTT-TTTTAAGT
* * *
86516191 TCGCTTTATTATTATGTATTTTAAGT
1 TTGTTTTATTATTAT-TTTTTTAAGT
86516217 CTTTACATAT
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
25 19 0.46
26 3 0.07
27 13 0.32
28 6 0.15
ACGTcount: A:0.23, C:0.04, G:0.08, T:0.65
Consensus pattern (25 bp):
TTGTTTTATTATTATTTTTTTAAGT
Found at i:86516288 original size:26 final size:26
Alignment explanation
Indices: 86516234--86516355 Score: 131
Period size: 26 Copynumber: 4.6 Consensus size: 26
86516224 TATTTTAAAC
* *
86516234 TATTATTCATTTTAAA-TTTTATATA
1 TATTATTTATTTTAAACTATTATATA
*
86516259 TATTATTTATTTTAAACTATTATACA
1 TATTATTTATTTTAAACTATTATATA
** *
86516285 TATTATTTATTTTGAAGTTTTTTATATA
1 TATTATTTATTTT-AA-ACTATTATATA
*
86516313 TACCTT-TTTATTTTAAACTATTTTATA
1 TA--TTATTTATTTTAAACTATTATATA
86516340 TATTATTTATTTTAAA
1 TATTATTTATTTTAAA
86516356 TTTCTTACAT
Statistics
Matches: 80, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
25 17 0.21
26 31 0.39
27 11 0.14
28 11 0.14
29 8 0.10
30 2 0.03
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.60
Consensus pattern (26 bp):
TATTATTTATTTTAAACTATTATATA
Found at i:86516427 original size:25 final size:25
Alignment explanation
Indices: 86516234--86516434 Score: 145
Period size: 25 Copynumber: 7.8 Consensus size: 25
86516224 TATTTTAAAC
* *
86516234 TATTATTCATTTTAAATTTTATATA
1 TATTATTTATTTTAAATTTTTTATA
* * *
86516259 TATTATTTATTTTAAACTATTATACA
1 TATTATTTATTTTAAA-TTTTTTATA
*
86516285 TATTATTTATTTTGAAGTTTTTTATA
1 TATTATTTATTTT-AAATTTTTTATA
* *
86516311 TATACCTTTTTATTTTAAACTATTTTATA
1 TAT---TATTTATTTTAAA-TTTTTTATA
* *
86516340 TATTATTTATTTTAAATTTCTTACA
1 TATTATTTATTTTAAATTTTTTATA
* * * * *
86516365 TGTCATTTA-GTTATACTGTTTTATA
1 TATTATTTATTTTA-AATTTTTTATA
* **
86516390 TGTTAACTATTTTAAATTCTTTTAT-
1 TATTATTTATTTTAAATT-TTTTATA
86516415 TATTATTTATTTTAAGATTT
1 TATTATTTATTTTAA-ATTT
86516435 CCTATATTAT
Statistics
Matches: 136, Mismatches: 30, Indels: 20
0.73 0.16 0.11
Matches are distributed among these distances:
24 3 0.02
25 56 0.41
26 53 0.39
27 2 0.01
28 2 0.01
29 20 0.15
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (25 bp):
TATTATTTATTTTAAATTTTTTATA
Found at i:86516458 original size:75 final size:76
Alignment explanation
Indices: 86516321--86516465 Score: 190
Period size: 75 Copynumber: 1.9 Consensus size: 76
86516311 TATACCTTTT
* *
86516321 TATTTTAAACTATTTTATATATTATTTATTTTAAATTTCTTACATGTCATTTAGTTATACTGTTT
1 TATTTTAAACTATTTTATATATTATTTATTTTAAATTTCCTACATGTCATTTAGTTAAACTGTTT
86516386 TATATGTTAAC
66 TATATGTTAAC
* * *
86516397 TATTTTAAATTCTTTTAT-TATTATTTATTTTAAGATTTCCTATAT-T-ATTCGTA-TTAAACTG
1 TATTTTAAACTATTTTATATATTATTTATTTTAA-ATTTCCTACATGTCATT--TAGTTAAACTG
86516458 TTTTATAT
63 TTTTATAT
86516466 ATATTTTTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
74 3 0.05
75 31 0.51
76 27 0.44
ACGTcount: A:0.30, C:0.08, G:0.05, T:0.58
Consensus pattern (76 bp):
TATTTTAAACTATTTTATATATTATTTATTTTAAATTTCCTACATGTCATTTAGTTAAACTGTTT
TATATGTTAAC
Found at i:86525738 original size:28 final size:28
Alignment explanation
Indices: 86525698--86525753 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
86525688 CTTTGGCAAT
86525698 TAGTATAGTTTTATACATGTCAACAGAA
1 TAGTATAGTTTTATACATGTCAACAGAA
86525726 TAGTATAGTTTTATACATGTCAACAGAA
1 TAGTATAGTTTTATACATGTCAACAGAA
86525754 CCATCAGATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (28 bp):
TAGTATAGTTTTATACATGTCAACAGAA
Found at i:86530809 original size:27 final size:27
Alignment explanation
Indices: 86530778--86530955 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86530768 TAAATTGTAC
86530778 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
86530805 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86530831 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
86530859 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
86530887 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86530914 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
86530941 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86530956 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:86530892 original size:82 final size:81
Alignment explanation
Indices: 86530779--86530934 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86530769 AAATTGTACA
* *
86530779 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
86530843 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
86530860 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
86530925 TGCGAGTTGA
65 TGCGAATTGA
86530935 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86530946 original size:82 final size:81
Alignment explanation
Indices: 86530775--86530955 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
86530765 GATTAAATTG
* *
86530775 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
86530840 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
86530856 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
86530920 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
86530938 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
86530956 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:86538745 original size:27 final size:27
Alignment explanation
Indices: 86538714--86538891 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
86538704 TAAATTGTAC
86538714 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** *
86538741 TGCACTAAGTGTACGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86538767 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
86538795 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
86538823 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86538850 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
86538877 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86538892 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:86538828 original size:82 final size:81
Alignment explanation
Indices: 86538715--86538870 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
86538705 AAATTGTACA
* *
86538715 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTACGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTA-GCACTAAGTG
86538779 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
86538796 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTAGCACTAAGTG
*
86538861 TGCGAGTTGA
65 TGCGAATTGA
86538871 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86538882 original size:82 final size:81
Alignment explanation
Indices: 86538711--86538891 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
86538701 GATTAAATTG
* *
86538711 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTACGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGATGCACTAA
86538776 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
86538792 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTACGAAATGAATACGAT-GCACT
* **
86538856 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
86538874 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
86538892 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:86543261 original size:22 final size:22
Alignment explanation
Indices: 86543236--86543280 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
86543226 GATGCATTTC
*
86543236 ATGC-ATTTTCATGCCATTAATA
1 ATGCAATTATCATG-CATTAATA
*
86543258 ATGCAATTATCATGCATTCATA
1 ATGCAATTATCATGCATTAATA
86543280 A
1 A
86543281 ATTATACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (22 bp):
ATGCAATTATCATGCATTAATA
Found at i:86547137 original size:27 final size:27
Alignment explanation
Indices: 86547107--86547257 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
86547097 ATATTAAGTC
* *
86547107 CGCACACTCAGTGCTATATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
86547134 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
86547162 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
86547189 CGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
86547216 CGCACACTTAGTGCTACATAGTCCAACT
1 CGCACACTTAGTGCTACATAGT-CAACT
86547244 CGCACA-TTAGTGCT
1 CGCACACTTAGTGCT
86547258 GTACAATTTA
Statistics
Matches: 114, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
27 78 0.68
28 36 0.32
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:86547175 original size:55 final size:54
Alignment explanation
Indices: 86547107--86547257 Score: 223
Period size: 55 Copynumber: 2.8 Consensus size: 54
86547097 ATATTAAGTC
* *
86547107 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATC-AACT
* * * *
86547162 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
86547216 CGCACACTTAGTGCTACATAGTCCAACTCGCACA-TTAGTGCT
1 CGCACACTTAGTGCTACATAGT-CAACTCGCACACTTAGTGCT
86547258 GTACAATTTA
Statistics
Matches: 87, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
54 32 0.37
55 55 0.63
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:86547244 original size:82 final size:81
Alignment explanation
Indices: 86547107--86547257 Score: 239
Period size: 82 Copynumber: 1.9 Consensus size: 81
86547097 ATATTAAGTC
* *
86547107 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACA-TTA
86547172 GTGCTACATAGTCAATT
65 GTGCTACATAGTCAATT
* * * *
86547189 CGCACACTTAGTGCAACATAGTCAATTCGCACACTTAGTGCTACATAGTCCAACTCGCACATTAG
1 CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACATTAG
86547254 TGCT
66 TGCT
86547258 GTACAATTTA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
81 8 0.13
82 55 0.87
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (81 bp):
CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACATTAG
TGCTACATAGTCAATT
Found at i:86554150 original size:22 final size:22
Alignment explanation
Indices: 86554125--86554169 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
86554115 TATGCATTTC
*
86554125 ATGC-ATTTTCATGCCATTAATA
1 ATGCAATTATCATG-CATTAATA
*
86554147 ATGCAATTATCATGCATTCATA
1 ATGCAATTATCATGCATTAATA
86554169 A
1 A
86554170 ATCATACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (22 bp):
ATGCAATTATCATGCATTAATA
Found at i:86558741 original size:63 final size:63
Alignment explanation
Indices: 86558668--86558789 Score: 235
Period size: 63 Copynumber: 1.9 Consensus size: 63
86558658 TGGAGTCTCT
86558668 TTACGACTATTGGGAGCGATTGAAGAAATTGTGTGCAAGTTGCCCACAATATGGTATAACGGA
1 TTACGACTATTGGGAGCGATTGAAGAAATTGTGTGCAAGTTGCCCACAATATGGTATAACGGA
*
86558731 TTACGACTATTGGGAGCGATTGAAGAAATTGTGTGCAAGTTTCCCACAATATGGTATAA
1 TTACGACTATTGGGAGCGATTGAAGAAATTGTGTGCAAGTTGCCCACAATATGGTATAA
86558790 TGGAACAATC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 58 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (63 bp):
TTACGACTATTGGGAGCGATTGAAGAAATTGTGTGCAAGTTGCCCACAATATGGTATAACGGA
Found at i:86563284 original size:24 final size:22
Alignment explanation
Indices: 86563251--86563333 Score: 103
Period size: 22 Copynumber: 3.6 Consensus size: 22
86563241 CCTGAGCTGA
86563251 TAAACAGTAAGCTCTATTGAGC
1 TAAACAGTAAGCTCTATTGAGC
*
86563273 TACAAACGGTAAGCTCTATTGAGC
1 T--AAACAGTAAGCTCTATTGAGC
*
86563297 TAAACAGTAAGCTCTATCGAGC
1 TAAACAGTAAGCTCTATTGAGC
* *
86563319 TGAATCGGTAAGCTC
1 T-AAACAGTAAGCTC
86563334 ATACGAGCTG
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
22 21 0.40
23 11 0.21
24 21 0.40
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (22 bp):
TAAACAGTAAGCTCTATTGAGC
Found at i:86563306 original size:22 final size:23
Alignment explanation
Indices: 86563229--86563333 Score: 104
Period size: 24 Copynumber: 4.4 Consensus size: 23
86563219 GAGTCATGGT
**
86563229 CAGTAAGCTCCTCCTGAGCTGATAAA
1 CAGTAAGCT-CTATTGAGCT-A-AAA
86563255 CAGTAAGCTCTATTGAGCTACAAA
1 CAGTAAGCTCTATTGAGCTA-AAA
*
86563279 CGGTAAGCTCTATTGAGCT-AAA
1 CAGTAAGCTCTATTGAGCTAAAA
* * *
86563301 CAGTAAGCTCTATCGAGCTGAAT
1 CAGTAAGCTCTATTGAGCTAAAA
*
86563324 CGGTAAGCTC
1 CAGTAAGCTC
86563334 ATACGAGCTG
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
22 20 0.29
23 11 0.16
24 22 0.31
25 8 0.11
26 9 0.13
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (23 bp):
CAGTAAGCTCTATTGAGCTAAAA
Found at i:86570964 original size:23 final size:24
Alignment explanation
Indices: 86570900--86570968 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
86570890 AAGCTCCTCC
* * *
86570900 TGAGCTGATAAACAGTAAGCTCTAT
1 TGAGCT-ACAAACAGTAAGCTCCAA
*
86570925 TGAGCTACAAACGGTAAGCTCCAA
1 TGAGCTACAAACAGTAAGCTCCAA
86570949 TGAGCTA-AAACAGTAAGCTC
1 TGAGCTACAAACAGTAAGCTC
86570969 TTACGAGCTG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 12 0.31
24 21 0.54
25 6 0.15
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (24 bp):
TGAGCTACAAACAGTAAGCTCCAA
Found at i:86570976 original size:23 final size:22
Alignment explanation
Indices: 86570909--86571000 Score: 76
Period size: 23 Copynumber: 4.0 Consensus size: 22
86570899 CTGAGCTGAT
*
86570909 AAACAGTAAGCTCTATTGAGCTA
1 AAACAGTAAGCTCTA-CGAGCTA
* * *
86570932 CAAACGGTAAGCTCCAATGAGCTA
1 -AAACAGTAAGCT-CTACGAGCTA
*
86570956 AAACAGTAAGCTCTTACGAGCTG
1 AAACAGTAAGCTC-TACGAGCTA
* *
86570979 AATCGGTAAGCTCATACGAGCT
1 AAACAGTAAGCTC-TACGAGCT
86571001 GTGGTGAGTC
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
22 1 0.02
23 36 0.63
24 18 0.32
25 2 0.04
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (22 bp):
AAACAGTAAGCTCTACGAGCTA
Found at i:86570977 original size:47 final size:49
Alignment explanation
Indices: 86570886--86570991 Score: 121
Period size: 47 Copynumber: 2.2 Consensus size: 49
86570876 GGGTCATGGT
** *
86570886 CGGTAAGCTCCTCCTGAGCTGATAAACAGTAAGCTCTATTGAGCTACAAA
1 CGGTAAGCTCCTAATGAGCTGATAAACAGTAAGCTCTATCGAGCT-CAAA
* *
86570936 CGGTAAGCTCC-AATGAGCT-A-AAACAGTAAGCTCT-TACGAGCTGAAT
1 CGGTAAGCTCCTAATGAGCTGATAAACAGTAAGCTCTAT-CGAGCTCAAA
86570982 CGGTAAGCTC
1 CGGTAAGCTC
86570992 ATACGAGCTG
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
46 13 0.26
47 19 0.38
48 1 0.02
49 6 0.12
50 11 0.22
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.23
Consensus pattern (49 bp):
CGGTAAGCTCCTAATGAGCTGATAAACAGTAAGCTCTATCGAGCTCAAA
Found at i:86574990 original size:5 final size:6
Alignment explanation
Indices: 86574974--86574998 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
86574964 TTGTTGAAAT
86574974 TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA T
86574999 TATTTTAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:86590302 original size:21 final size:20
Alignment explanation
Indices: 86590271--86590310 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
86590261 TTCTTGAAAC
*
86590271 AGGGCACACGCCTGTGTGGA
1 AGGGCACACGCCCGTGTGGA
86590291 AGGGCAACACGCCCGTGTGG
1 AGGGC-ACACGCCCGTGTGG
86590311 TCATAATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (20 bp):
AGGGCACACGCCCGTGTGGA
Found at i:86590770 original size:192 final size:192
Alignment explanation
Indices: 86590443--86590806 Score: 638
Period size: 192 Copynumber: 1.9 Consensus size: 192
86590433 ATGACCTAGA
86590443 ACACGCCCGTGTCCTAACCCGTGTCTAAAAGCCTTGACATTCTATTTCTAACGCCAGCATCCAAT
1 ACACGCCCGTGTCCTAACCCGTGTCTAAAAGCCTTGACATTCTATTTCTAACGCCAGCATCCAAT
* *
86590508 AAGGGGCGCACGGCTAAGGCACACGCCCGTGGCCAGAGATCGTGTCCTCCACACGATTGAGACAC
66 AAGGGGCGCACGGCCAAGGCACACGCCCGTGGCCAGAGATCGTATCCTCCACACGATTGAGACAC
*
86590573 ACGGCCATGTCTCTACCTGTGTGTTTACTACCATGCATTTTGGTGTCCCTCACACGGCCATG
131 ACGGCCATGTCTCTACATGTGTGTTTACTACCATGCATTTTGGTGTCCCTCACACGGCCATG
* *
86590635 ACACGCCCGTGTCCTAACCCGTGTCTAAAAGCCTTGACATTCTATTTCTGACGTCAGCATCCAAT
1 ACACGCCCGTGTCCTAACCCGTGTCTAAAAGCCTTGACATTCTATTTCTAACGCCAGCATCCAAT
* * * *
86590700 AAGGGGTGCACGGCCAAGGCACACGCCCGTGGCCAGAGGTCGTATCTTCCACATGATTGAGACAC
66 AAGGGGCGCACGGCCAAGGCACACGCCCGTGGCCAGAGATCGTATCCTCCACACGATTGAGACAC
*
86590765 ACGGCCGTGTCTCTACATGTGTGTTTACTACCATGCATTTTG
131 ACGGCCATGTCTCTACATGTGTGTTTACTACCATGCATTTTG
86590807 ACTTACAAGT
Statistics
Matches: 162, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
192 162 1.00
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (192 bp):
ACACGCCCGTGTCCTAACCCGTGTCTAAAAGCCTTGACATTCTATTTCTAACGCCAGCATCCAAT
AAGGGGCGCACGGCCAAGGCACACGCCCGTGGCCAGAGATCGTATCCTCCACACGATTGAGACAC
ACGGCCATGTCTCTACATGTGTGTTTACTACCATGCATTTTGGTGTCCCTCACACGGCCATG
Found at i:86591828 original size:96 final size:94
Alignment explanation
Indices: 86591634--86591954 Score: 309
Period size: 96 Copynumber: 3.4 Consensus size: 94
86591624 GGTATAATGT
* * *
86591634 CGATGCCATATCCCAGACATCGTCTTACACTGGCTCATC-CATCAAGT-T-GATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACATCACGTGTCGAT-CCATGTCCCA
**
86591696 GACATGGTCTTACACTGACTATCGAAATCGAGGC
64 GACATGGTCTTACACTGA-TA-C-ATCTCGAGGC
* *
86591730 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCTCCGTGTCGATACCATATCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATC-ACGTGTCGAT-CCATGTCCCA
*
86591795 GACGTGGTCTTACACTGATACATCTCGTA-GC
64 GACATGGTCTTACACTGATACATCTCG-AGGC
* * * *
86591826 CGATG-CATGTCCCAGACAT-GTCTTACATTGGCT-T-ACATCACGAGGCCGATGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCACG-TGTCGATCCATGTCCCAG
* * * * *
86591887 ACAT-GTCTTACACTAGCTCTCGTCTCAATGC
65 ACATGGTCTTACACT-GAT-ACATCTCGAGGC
* *
86591918 CGATGCTATGTCCCAGACATGGTCATACACTGGCTCT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT
86591955 AATAATGTGG
Statistics
Matches: 190, Mismatches: 23, Indels: 25
0.80 0.10 0.11
Matches are distributed among these distances:
90 10 0.05
91 17 0.09
92 22 0.12
93 14 0.07
94 25 0.13
95 17 0.09
96 49 0.26
97 4 0.02
98 3 0.02
99 29 0.15
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCACGTGTCGATCCATGTCCCAGA
CATGGTCTTACACTGATACATCTCGAGGC
Found at i:86591863 original size:46 final size:48
Alignment explanation
Indices: 86591634--86591994 Score: 245
Period size: 46 Copynumber: 7.6 Consensus size: 48
86591624 GGTATAATGT
* * * * *
86591634 CGATGCCATATCCCAGACATCGTCTTACACTGGCTCATCCA--TC-AAGT
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTC-TACATCTCGTAGC
* * * **
86591681 TGATGCCATGTCCCAGACATGGTCTTACACTGACTAT-CGAAATCG-AGGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTAC-ATCTCGTA-GC
*
86591730 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCTCCGT-GT
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTCT-ACATCT-CGTAGC
* * * *
86591780 CGATACCATATCCCAGACGTGGTCTTACACT-G--ATACATCTCGTAGC
1 CGAT-GCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTAGC
* *
86591826 CGATGCATGTCCCAGACAT-GTCTTACATTGGCT-TACATCACG-AGGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTA-GC
* * *
86591872 CGATGCATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTC-AATGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTA-GC
* * *
86591918 CGATGCTATGTCCCAGACATGGTCATACACTGGCTCTA-ATAAT-GTGGC
1 CGATGC-ATGTCCCAGACATGGTCTTACACTGGCTCTACAT-CTCGTAGC
* * *
86591966 TGATGCATGTCCGAAACAT-GTCTTACACT
1 CGATGCATGTCCCAGACATGGTCTTACACT
86591995 AGCACGCAAA
Statistics
Matches: 255, Mismatches: 37, Indels: 45
0.76 0.11 0.13
Matches are distributed among these distances:
44 9 0.04
45 18 0.07
46 76 0.30
47 57 0.22
48 25 0.10
49 37 0.15
50 30 0.12
51 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTAGC
Found at i:86591975 original size:94 final size:91
Alignment explanation
Indices: 86591634--86591994 Score: 272
Period size: 94 Copynumber: 3.8 Consensus size: 91
86591624 GGTATAATGT
* * * *
86591634 CGATGCCATATCCCAGACATCGTCTTACACTGGCTCATCCATCAAGT---TGATGCCATGTCCCA
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTC-TACAT-ATGTGGCTGATG-CATGTCCCA
** *
86591696 GACATGGTCTTACACTGACTATCGAAATCGAGGC
62 GACATGGTCTTACACTG-CT-TCG-TCTC-ATGC
* * * *
86591730 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCTCCGTGTC-GATACCATATCCC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTCT-ACATAT--GTGGCTGAT-GCATGTCCC
* * * * *
86591794 AGACGTGGTCTTACACTGATACATCTCGTAGC
61 AGACATGGTCTTACACTGCTTCGTCTCAT-GC
* * * *
86591826 CGATGCATGTCCCAGACAT-GTCTTACATTGGCT-TACATCACGAGGCCGATGCATGTCCCAGAC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTCTACAT-ATGTGGCTGATGCATGTCCCAGAC
86591889 AT-GTCTTACACTAGCTCTCGTCTCAATGC
65 ATGGTCTTACACT-GCT-TCGTCTC-ATGC
* * *
86591918 CGATGCTATGTCCCAGACATGGTCATACACTGGCTCTA-ATAATGTGGCTGATGCATGTCCGAAA
1 CGATGC-ATGTCCCAGACATGGTCTTACACTGGCTCTACAT-ATGTGGCTGATGCATGTCCCAGA
86591982 CAT-GTCTTACACT
64 CATGGTCTTACACT
86591995 AGCACGCAAA
Statistics
Matches: 214, Mismatches: 35, Indels: 34
0.76 0.12 0.12
Matches are distributed among these distances:
90 10 0.05
91 17 0.08
92 20 0.09
93 15 0.07
94 58 0.27
95 17 0.08
96 46 0.21
97 3 0.01
98 1 0.00
99 27 0.13
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (91 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATATGTGGCTGATGCATGTCCCAGACA
TGGTCTTACACTGCTTCGTCTCATGC
Found at i:86593650 original size:214 final size:213
Alignment explanation
Indices: 86593274--86593709 Score: 739
Period size: 214 Copynumber: 2.0 Consensus size: 213
86593264 TTAATATTAG
*
86593274 TAATTTCATATCATTTAAGCTCTAACATTCATAAAATTAGAAATATAATTTAGTTCATATTAAAT
1 TAATTTTATATCATTTAAGCTCTAACATTCATAAAATTAGAAATATAATTTAGTTCATATTAAAT
*
86593339 GAACTTACCTGATAAAAAAACGAAGTCGAAATTGAGAAAATGATCAATCCTTTACTTTAGCCTTT
66 GAACTTACCTGATAAAAAAACGAAGTCGAAATTGAGAAAACGATCAATCCTTTACTTTAGCCTTT
*
86593404 CCGCAATTCAAACCTAATCGATTTATTTCTTGATCTAAAATAATAATTATATTTAATTATCAGCT
131 CCGCAATTCAAACCTAATCGATTTATTTCTTGATCTAAAATAATAATTATATTTAATTATCAACT
86593469 TCCAACAACATAATTAAA
196 TCCAACAACATAATTAAA
*
86593487 TAATTTTA-ATCATTTAAGCTTTAACATTCATAAAAAATTAGAAATATAATTTAGTTCATATTAA
1 TAATTTTATATCATTTAAGCTCTAACATTCAT--AAAATTAGAAATATAATTTAGTTCATATTAA
86593551 ATGAACTTACCTGATAAAAAAACGAAGTCGAAATTGAGAAAACGATCAATCCTTTACTTTAGCCT
64 ATGAACTTACCTGATAAAAAAACGAAGTCGAAATTGAGAAAACGATCAATCCTTTACTTTAGCCT
* ** ** *
86593616 TTCCGCGATTCAAACCTGGTCGATTTATTTCTTGATCTAAAATTTTAATTCTATTTAATTATCAA
129 TTCCGCAATTCAAACCTAATCGATTTATTTCTTGATCTAAAATAATAATTATATTTAATTATCAA
* *
86593681 CTTCCAGCAACATAATTAAC
194 CTTCCAACAACATAATTAAA
86593701 TAATTTTAT
1 TAATTTTAT
86593710 GCAATTAAGT
Statistics
Matches: 208, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
212 22 0.11
213 7 0.03
214 179 0.86
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (213 bp):
TAATTTTATATCATTTAAGCTCTAACATTCATAAAATTAGAAATATAATTTAGTTCATATTAAAT
GAACTTACCTGATAAAAAAACGAAGTCGAAATTGAGAAAACGATCAATCCTTTACTTTAGCCTTT
CCGCAATTCAAACCTAATCGATTTATTTCTTGATCTAAAATAATAATTATATTTAATTATCAACT
TCCAACAACATAATTAAA
Found at i:86596986 original size:18 final size:20
Alignment explanation
Indices: 86596953--86596990 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
86596943 AAGGAGTTTA
86596953 TTTATAATTATAATTATATT
1 TTTATAATTATAATTATATT
86596973 TTTAT-ATTAT-ATTATATT
1 TTTATAATTATAATTATATT
86596991 AGAATCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.44
19 5 0.28
20 5 0.28
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTATAATTATAATTATATT
Found at i:86597528 original size:16 final size:16
Alignment explanation
Indices: 86597507--86597538 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
86597497 GAAGTTACTT
*
86597507 TTAAAAATTAATTTAA
1 TTAAAAATTAAATTAA
86597523 TTAAAAATTAAATTAA
1 TTAAAAATTAAATTAA
86597539 GTTCTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TTAAAAATTAAATTAA
Found at i:86602952 original size:70 final size:70
Alignment explanation
Indices: 86602832--86602965 Score: 171
Period size: 70 Copynumber: 1.9 Consensus size: 70
86602822 AACCGCATAG
* * *
86602832 ATATATTACAGAGAACTGCAAAGCAATACAACTAGAAAAAATTCCAAGCCATATTAATATTCACA
1 ATATATTACAGAGAACTGAAAAGAAATACAACTAGAAAAAATTCCAAGCCATATTAACATTCACA
86602897 TAGAT
66 TAGAT
* * * * * *
86602902 ATATATTATAGAGAACTGAAAAGAAATATAACTTGAAAAAGA-TGCGAGCCATATTGACATTCAC
1 ATATATTACAGAGAACTGAAAAGAAATACAACTAGAAAAA-ATTCCAAGCCATATTAACATTCAC
86602966 CATTTAGTCC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
70 53 0.98
71 1 0.02
ACGTcount: A:0.48, C:0.15, G:0.13, T:0.25
Consensus pattern (70 bp):
ATATATTACAGAGAACTGAAAAGAAATACAACTAGAAAAAATTCCAAGCCATATTAACATTCACA
TAGAT
Found at i:86622976 original size:24 final size:25
Alignment explanation
Indices: 86622931--86623011 Score: 85
Period size: 24 Copynumber: 3.2 Consensus size: 25
86622921 TTATATTTTA
* *
86622931 TATATATTTTGAATATTCAATAATT
1 TATATATTTTGAATTTTAAATAATT
*
86622956 TATATA-TTTGAATTTTAAATAGTT
1 TATATATTTTGAATTTTAAATAATT
* *
86622980 T-TAAATTTTAAATTTTAAAATAATTT
1 TATATATTTTGAATTTT-AAATAA-TT
86623006 TATATA
1 TATATA
86623012 AGTTTATATA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
23 3 0.07
24 25 0.56
25 11 0.24
26 3 0.07
27 3 0.07
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (25 bp):
TATATATTTTGAATTTTAAATAATT
Found at i:86622982 original size:25 final size:24
Alignment explanation
Indices: 86622931--86623011 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 24
86622921 TTATATTTTA
* * *
86622931 TATATATTTTGAATATTCAATAATT
1 TATATA-TTTGAATTTTAAATATTT
86622956 TATATATTTGAATTTTAAATAGTTT
1 TATATATTTGAATTTTAAATA-TTT
* *
86622981 TAAAT-TTTAAATTTTAAAATAATTT
1 TATATATTTGAATTTT-AAAT-ATTT
86623006 TATATA
1 TATATA
86623012 AGTTTATATA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
24 22 0.48
25 23 0.50
26 1 0.02
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (24 bp):
TATATATTTGAATTTTAAATATTT
Found at i:86627640 original size:12 final size:13
Alignment explanation
Indices: 86627618--86627649 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
86627608 AAAAAACATA
86627618 TATGATATGTATG
1 TATGATATGTATG
86627631 TATG-TATGTATG
1 TATGATATGTATG
86627643 TAT-ATAT
1 TATGATAT
86627650 ACAAAAGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 14 0.78
13 4 0.22
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (13 bp):
TATGATATGTATG
Found at i:86627691 original size:4 final size:4
Alignment explanation
Indices: 86627677--86627729 Score: 61
Period size: 4 Copynumber: 13.0 Consensus size: 4
86627667 AAAAAACATA
* * **
86627677 TATG ATATG TATG TATG TATG CATG TATG TATG CATG TACA TATG TATG
1 TATG -TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
86627726 TATG
1 TATG
86627730 CCAGTGTGAG
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
4 36 0.90
5 4 0.10
ACGTcount: A:0.28, C:0.06, G:0.23, T:0.43
Consensus pattern (4 bp):
TATG
Found at i:86627708 original size:63 final size:59
Alignment explanation
Indices: 86627584--86627704 Score: 233
Period size: 59 Copynumber: 2.1 Consensus size: 59
86627574 GATTATAAAA
86627584 TATATATACAAAAGCATTATTTCCAAAAAACATATATGATATGTATGTATGTATGTATG
1 TATATATACAAAAGCATTATTTCCAAAAAACATATATGATATGTATGTATGTATGTATG
*
86627643 TATATATACAAAAGCATTATTTCCAAAAAACATATATGATATGTATGTATGTATGCATG
1 TATATATACAAAAGCATTATTTCCAAAAAACATATATGATATGTATGTATGTATGTATG
86627702 TAT
1 TAT
86627705 GTATGCATGT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.37
Consensus pattern (59 bp):
TATATATACAAAAGCATTATTTCCAAAAAACATATATGATATGTATGTATGTATGTATG
Found at i:86630582 original size:20 final size:20
Alignment explanation
Indices: 86630557--86630623 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 20
86630547 TACAAAAAGA
86630557 AAAATTCAAAAATAATTTTT
1 AAAATTCAAAAATAATTTTT
*
86630577 AAAATTC-AAAAT-ATTTATA
1 AAAATTCAAAAATAATTT-TT
86630596 AAAATTTCAAAAATTTAAATTTTT
1 AAAA-TTCAAAAA--T-AATTTTT
86630620 AAAA
1 AAAA
86630624 AATTATATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
18 4 0.11
19 10 0.26
20 10 0.26
21 4 0.11
23 1 0.03
24 5 0.13
25 4 0.11
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAATTCAAAAATAATTTTT
Found at i:86630589 original size:19 final size:19
Alignment explanation
Indices: 86630557--86630609 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
86630547 TACAAAAAGA
*
86630557 AAAATTCAAAAATAATTTTT
1 AAAATTCAAAAAT-ATTTAT
86630577 AAAATTC-AAAATATTTAT
1 AAAATTCAAAAATATTTAT
86630595 AAAAATTTCAAAAAT
1 -AAAA-TTCAAAAAT
86630610 TTAAATTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 5 0.17
19 9 0.31
20 10 0.34
21 5 0.17
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAATTCAAAAATATTTAT
Found at i:86635551 original size:91 final size:91
Alignment explanation
Indices: 86635396--86635577 Score: 364
Period size: 91 Copynumber: 2.0 Consensus size: 91
86635386 TGGTCCAATC
86635396 GACATGTTCCGTAAACTGACGATCTACAACGAAAAAGGAGATAATGGGTAAGATTTTGAATGCTT
1 GACATGTTCCGTAAACTGACGATCTACAACGAAAAAGGAGATAATGGGTAAGATTTTGAATGCTT
86635461 AGTAAGTCCATATTAAATTTACTTAA
66 AGTAAGTCCATATTAAATTTACTTAA
86635487 GACATGTTCCGTAAACTGACGATCTACAACGAAAAAGGAGATAATGGGTAAGATTTTGAATGCTT
1 GACATGTTCCGTAAACTGACGATCTACAACGAAAAAGGAGATAATGGGTAAGATTTTGAATGCTT
86635552 AGTAAGTCCATATTAAATTTACTTAA
66 AGTAAGTCCATATTAAATTTACTTAA
86635578 CTTACCTTAA
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (91 bp):
GACATGTTCCGTAAACTGACGATCTACAACGAAAAAGGAGATAATGGGTAAGATTTTGAATGCTT
AGTAAGTCCATATTAAATTTACTTAA
Found at i:86639928 original size:30 final size:31
Alignment explanation
Indices: 86639902--86639960 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
86639892 GTAAATACTC
* *
86639902 AAAATTTGAGGGATTAA-AGTGTAAATATGA
1 AAAATTTGAAGGACTAATAGTGTAAATATGA
*
86639932 AAAATTTGAAGGACTAATAGTGAAAATAT
1 AAAATTTGAAGGACTAATAGTGTAAATAT
86639961 TTTAAGGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.49, C:0.02, G:0.20, T:0.29
Consensus pattern (31 bp):
AAAATTTGAAGGACTAATAGTGTAAATATGA
Found at i:86642835 original size:21 final size:21
Alignment explanation
Indices: 86642787--86642826 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
86642777 AGGGCATACA
86642787 CCCGTGTAGAAGGGAAACACG
1 CCCGTGTAGAAGGGAAACACG
86642808 CCCGTGTAGAAGGGAAACA
1 CCCGTGTAGAAGGGAAACA
86642827 TGGTCGTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.23, G:0.33, T:0.10
Consensus pattern (21 bp):
CCCGTGTAGAAGGGAAACACG
Found at i:86644575 original size:40 final size:38
Alignment explanation
Indices: 86644525--86644689 Score: 143
Period size: 39 Copynumber: 4.2 Consensus size: 38
86644515 CAAATCCAAT
* * *
86644525 CACCACCACAAAGCATGCGGGACTTTAAGCCCGGATGTAA
1 CACCAGCACAAAGCATGCAGGAC-TT-AGCCCGGATATAA
* * *
86644565 TACCAGCACAAAGCCTTCAGGACTTAGCCCGGATATAA
1 CACCAGCACAAAGCATGCAGGACTTAGCCCGGATATAA
** * * * *
86644603 CACCAGCACGACTGCCTTCGGGACTTAGCCCGGGTATAA
1 CACCAGCAC-AAAGCATGCAGGACTTAGCCCGGATATAA
* * *
86644642 CACCAGCACGAATGCCTTC-GAGACTTAGCCCGGATATAA
1 CACCAGCAC-AAAGCATGCAG-GACTTAGCCCGGATATAA
86644681 CACCAGCAC
1 CACCAGCAC
86644690 GAATGCCTTC
Statistics
Matches: 110, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
38 21 0.19
39 71 0.65
40 18 0.16
ACGTcount: A:0.30, C:0.32, G:0.21, T:0.16
Consensus pattern (38 bp):
CACCAGCACAAAGCATGCAGGACTTAGCCCGGATATAA
Found at i:86644631 original size:39 final size:39
Alignment explanation
Indices: 86644542--86644718 Score: 248
Period size: 39 Copynumber: 4.5 Consensus size: 39
86644532 ACAAAGCATG
* * *
86644542 CGGGACTTTAAGCCCGGATGTAATACCAGCAC-AAAGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* *
86644582 CAGGACTTAGCCCGGATATAACACCAGCACGACTGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
86644621 CGGGACTTAGCCCGGGTATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
86644660 CGAGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
86644699 CGGAAATTAGCCCGGATATA
1 CGGGACTTAGCCCGGATATA
86644719 TATCTCACAC
Statistics
Matches: 123, Mismatches: 13, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
38 20 0.16
39 98 0.80
40 5 0.04
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:86650968 original size:40 final size:38
Alignment explanation
Indices: 86650918--86651088 Score: 130
Period size: 39 Copynumber: 4.4 Consensus size: 38
86650908 CAAATCCAAT
* * *
86650918 CACCACCACAAAGCATGCGGGACTTTAAGCCCGGATGTAA
1 CACCAGCACAAAGCATGCAGGAC-TT-AGCCCGGATATAA
* * *
86650958 TACCAGCACAAAGCCTTCAGGACTTAGCCCGGATATAA
1 CACCAGCACAAAGCATGCAGGACTTAGCCCGGATATAA
* * * * *
86650996 CACCAGCACGAATGCCTTCGGGAGTTAGCCC-GAGTATAA
1 CACCAGCAC-AAAGCATGCAGGACTTAGCCCGGA-TATAA
* * * *
86651035 CACCAGCACGAATGCCTTC-GAGACTTAGCTCGGATATAA
1 CACCAGCAC-AAAGCATGCAG-GACTTAGCCCGGATATAA
86651074 CACCAGCACGAAAGC
1 CACCAGCAC-AAAGC
86651089 CTTCGAAAAT
Statistics
Matches: 114, Mismatches: 13, Indels: 9
0.84 0.10 0.07
Matches are distributed among these distances:
38 23 0.20
39 71 0.62
40 20 0.18
ACGTcount: A:0.32, C:0.30, G:0.22, T:0.16
Consensus pattern (38 bp):
CACCAGCACAAAGCATGCAGGACTTAGCCCGGATATAA
Found at i:86651024 original size:39 final size:39
Alignment explanation
Indices: 86650945--86651111 Score: 214
Period size: 39 Copynumber: 4.3 Consensus size: 39
86650935 CGGGACTTTA
* *
86650945 AGCCCGGATGTAATACCAGCAC-AAAGCCTTC-AGGACTT
1 AGCCCGGATATAACACCAGCACGAAAGCCTTCGA-GACTT
* * *
86650983 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGAGTT
1 AGCCCGGATATAACACCAGCACGAAAGCCTTCGAGACTT
*
86651022 AGCCC-GAGTATAACACCAGCACGAATGCCTTCGAGACTT
1 AGCCCGGA-TATAACACCAGCACGAAAGCCTTCGAGACTT
* * *
86651061 AGCTCGGATATAACACCAGCACGAAAGCCTTCGAAAATT
1 AGCCCGGATATAACACCAGCACGAAAGCCTTCGAGACTT
86651100 AGCCCGGATATA
1 AGCCCGGATATA
86651112 TATCTCACAC
Statistics
Matches: 113, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
38 22 0.19
39 89 0.79
40 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.22, T:0.18
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAAAGCCTTCGAGACTT
Found at i:86654323 original size:46 final size:45
Alignment explanation
Indices: 86654229--86654344 Score: 148
Period size: 46 Copynumber: 2.6 Consensus size: 45
86654219 GCCAATGCCG
*
86654229 TGTCCCAAACATGGTCTTACACTGAC-ACATCTCATAGCCGATGCA
1 TGTCCCAAACAT-GTCTTACACTGGCTACATCTCATAGCCGATGCA
* *
86654274 TGTCCCAAACATGTCTTACACTGGCTTACTTCTCGA-GGCCGATGCA
1 TGTCCCAAACATGTCTTACACTGGC-TACATCTC-ATAGCCGATGCA
*
86654320 TGTCCCAGACAT-TCTTACACTGGCT
1 TGTCCCAAACATGTCTTACACTGGCT
86654345 CTCATAATGT
Statistics
Matches: 64, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
44 13 0.20
45 24 0.38
46 26 0.41
47 1 0.02
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (45 bp):
TGTCCCAAACATGTCTTACACTGGCTACATCTCATAGCCGATGCA
Found at i:86657757 original size:39 final size:39
Alignment explanation
Indices: 86657714--86657967 Score: 350
Period size: 39 Copynumber: 6.5 Consensus size: 39
86657704 GTGTGAGATA
* * *
86657714 TATATCCGGGTTAATTCCCGAAGGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
86657753 TATATCCGGGCTAAGTCCCGAAGACATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
86657792 TATACCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
86657831 TATA-CTCGGGCTAAGTCCTGAAGGCATTCATGCTGGTGT
1 TATATC-CGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
86657870 TATACCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * * *
86657909 TATATCCGGGCTAAGTACTGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
86657947 TACATCCGGGCTTAAAGTCCC
1 TATATCCGGGC-T-AAGTCCC
86657968 CCATGCTTTG
Statistics
Matches: 193, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
38 22 0.11
39 165 0.85
40 6 0.03
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:86660368 original size:43 final size:43
Alignment explanation
Indices: 86660262--86660370 Score: 148
Period size: 43 Copynumber: 2.5 Consensus size: 43
86660252 ATAGTCCAAC
* * *
86660262 TATGGTCTTACACGAT-ATCAAATAATGATGCCAATGTACCAGA
1 TATGGTCTTACA-AATAATCACATAAAGATGCCAATGTACCAGA
* * *
86660305 TAGGGTCTTACACATAATCACATAAAGATGCCAATGTCCCAGA
1 TATGGTCTTACAAATAATCACATAAAGATGCCAATGTACCAGA
86660348 TATGGTCTTACAAATAATCACAT
1 TATGGTCTTACAAATAATCACAT
86660371 CTCGTTAATC
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 2 0.03
43 56 0.97
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.28
Consensus pattern (43 bp):
TATGGTCTTACAAATAATCACATAAAGATGCCAATGTACCAGA
Found at i:86663386 original size:12 final size:12
Alignment explanation
Indices: 86663369--86663394 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
86663359 CTTTTTGGGT
86663369 TGACTAATGCCC
1 TGACTAATGCCC
86663381 TGACTAATGCCC
1 TGACTAATGCCC
86663393 TG
1 TG
86663395 GCGGCATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (12 bp):
TGACTAATGCCC
Found at i:86666505 original size:23 final size:23
Alignment explanation
Indices: 86666471--86666515 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
86666461 ATTTCTAGTT
*
86666471 AATTGAATTAAGTTATTCGAGTC
1 AATTGAATTAAGTAATTCGAGTC
86666494 AATTCGAA-TAAGTAATTCGAGT
1 AATT-GAATTAAGTAATTCGAGT
86666516 TTCGAGTTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.36
Consensus pattern (23 bp):
AATTGAATTAAGTAATTCGAGTC
Found at i:86666666 original size:29 final size:31
Alignment explanation
Indices: 86666597--86666667 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 31
86666587 CAAAATTTAT
*
86666597 ATTTTCTAAAAAAATTATAAAAATTTTAAAA
1 ATTTTCTAAAAAAAGTATAAAAATTTTAAAA
* * * *
86666628 AATATATAAAGAAAGT-T-AAAATTTTAAAA
1 ATTTTCTAAAAAAAGTATAAAAATTTTAAAA
*
86666657 TTTTTCTAAAA
1 ATTTTCTAAAA
86666668 TAATAATTTT
Statistics
Matches: 30, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
29 18 0.60
30 1 0.03
31 11 0.37
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (31 bp):
ATTTTCTAAAAAAAGTATAAAAATTTTAAAA
Found at i:86669959 original size:42 final size:41
Alignment explanation
Indices: 86669912--86669992 Score: 94
Period size: 42 Copynumber: 1.9 Consensus size: 41
86669902 AGAATTGAGC
86669912 ACACGG-GCAGAGACACGGACGTGTGTCTC-AGCCGTGTGAGGG
1 ACACGGCGCA-AG-CACGGACGTGTGTCTCGA-CCGTGTGAGGG
* *
86669954 ACACGGCCTCAAGCATGGACGTGTGTCTCGACCGTGTGA
1 ACACGG-CGCAAGCACGGACGTGTGTCTCGACCGTGTGA
86669993 AATCTGCACC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
42 29 0.85
43 3 0.09
44 2 0.06
ACGTcount: A:0.21, C:0.26, G:0.36, T:0.17
Consensus pattern (41 bp):
ACACGGCGCAAGCACGGACGTGTGTCTCGACCGTGTGAGGG
Found at i:86670186 original size:31 final size:31
Alignment explanation
Indices: 86670114--86670187 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
86670104 TGAGTTAGGG
* *
86670114 ACACGGGCGTGTGTGACCATATGGCCTGCCC
1 ACACGGGCGTGTGTGACCACACGGCCTGCCC
* * *
86670145 ATATGGGCGTGTGTGACCACACGGCCTGCCT
1 ACACGGGCGTGTGTGACCACACGGCCTGCCC
*
86670176 ACACGAGCGTGT
1 ACACGGGCGTGT
86670188 CCCAAACTAC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (31 bp):
ACACGGGCGTGTGTGACCACACGGCCTGCCC
Found at i:86670619 original size:18 final size:18
Alignment explanation
Indices: 86670592--86670648 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
86670582 ATTTTATAAA
86670592 ATAATAATATTTTAATTTT
1 ATAAT-ATATTTTAATTTT
* *
86670611 ATGATATATTTTATTTTT
1 ATAATATATTTTAATTTT
*
86670629 AAAATATAATTTT-ATTTT
1 ATAATAT-ATTTTAATTTT
86670647 AT
1 AT
86670649 TTTATTAATA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
18 22 0.71
19 9 0.29
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
ATAATATATTTTAATTTT
Found at i:86676867 original size:19 final size:18
Alignment explanation
Indices: 86676827--86676872 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
86676817 GATAACAAAG
* *
86676827 ATGAGAAATAACTATGAG
1 ATGAGAAATAAATATGAA
86676845 ATGAGAAATGAAATATGAA
1 ATGAGAAAT-AAATATGAA
86676864 ATGATGAAA
1 ATGA-GAAA
86676873 CGAGATGTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 9 0.38
19 11 0.46
20 4 0.17
ACGTcount: A:0.54, C:0.02, G:0.22, T:0.22
Consensus pattern (18 bp):
ATGAGAAATAAATATGAA
Found at i:86680435 original size:13 final size:13
Alignment explanation
Indices: 86680400--86680463 Score: 67
Period size: 13 Copynumber: 4.8 Consensus size: 13
86680390 TCAATGTAAA
*
86680400 CATTTCATATAAT
1 CATTTCATATAAC
*
86680413 TATTTCCATATAAC
1 CATTT-CATATAAC
*
86680427 C-TATTCATATAGC
1 CAT-TTCATATAAC
*
86680440 CATTTCATATAAT
1 CATTTCATATAAC
86680453 CATTTCATATA
1 CATTTCATATA
86680464 TTCATTTTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
13 32 0.76
14 10 0.24
ACGTcount: A:0.36, C:0.19, G:0.02, T:0.44
Consensus pattern (13 bp):
CATTTCATATAAC
Found at i:86680469 original size:26 final size:26
Alignment explanation
Indices: 86680398--86680470 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
86680388 TATCAATGTA
86680398 AACATTTCATATAATT-ATTTCCATAT
1 AACATTTCATAT-ATTCATTTCCATAT
* **
86680424 AACCTATTCATATAGCCATTT-CATAT
1 AACAT-TTCATATATTCATTTCCATAT
86680450 AATCATTTCATATATTCATTT
1 AA-CATTTCATATATTCATTT
86680471 TAAATTGTTC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 25 0.66
27 13 0.34
ACGTcount: A:0.36, C:0.18, G:0.01, T:0.45
Consensus pattern (26 bp):
AACATTTCATATATTCATTTCCATAT
Found at i:86681662 original size:21 final size:22
Alignment explanation
Indices: 86681617--86681667 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
86681607 TGTAGGGCTC
*
86681617 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGGACCAAGGG
**
86681639 ACACGCCCGTGT-GACCTTGGG
1 ACACGCCCGTGTGGACCAAGGG
86681660 ACACGCCC
1 ACACGCCC
86681668 CTGCTATAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 14 0.54
22 12 0.46
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (22 bp):
ACACGCCCGTGTGGACCAAGGG
Found at i:86691279 original size:20 final size:20
Alignment explanation
Indices: 86691250--86691287 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
86691240 TGATATGGTC
* *
86691250 TGTCCTATCACAGACATCCT
1 TGTCCCATCAAAGACATCCT
86691270 TGTCCCATCAAAGACATC
1 TGTCCCATCAAAGACATC
86691288 AACCCTACGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.34, G:0.11, T:0.26
Consensus pattern (20 bp):
TGTCCCATCAAAGACATCCT
Found at i:86702059 original size:22 final size:22
Alignment explanation
Indices: 86702033--86702149 Score: 75
Period size: 22 Copynumber: 5.2 Consensus size: 22
86702023 AAGCTAATTG
86702033 TAAAATCAAATAAAATATACAAA
1 TAAAATCAAATAAAATATA-AAA
*
86702056 -AAAATAAAAATAAAAGTA-AAAA
1 TAAAAT-CAAATAAAA-TATAAAA
*
86702078 TAAAA-CAAAATAAAATATTAAA
1 TAAAATC-AAATAAAATATAAAA
86702100 TAAAA-CAAAATAAGAA-ATAAGAA
1 TAAAATC-AAATAA-AATATAA-AA
* *
86702123 TAATAATAAGAATAATA-ATAAAA
1 TAA-AATCA-AATAAAATATAAAA
86702146 TAAA
1 TAAA
86702150 GAATAATAAC
Statistics
Matches: 78, Mismatches: 6, Indels: 21
0.74 0.06 0.20
Matches are distributed among these distances:
21 2 0.03
22 36 0.46
23 25 0.32
24 10 0.13
25 5 0.06
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.20
Consensus pattern (22 bp):
TAAAATCAAATAAAATATAAAA
Found at i:86702066 original size:6 final size:6
Alignment explanation
Indices: 86702055--86702169 Score: 65
Period size: 6 Copynumber: 18.3 Consensus size: 6
86702045 AAATATACAA
* * *
86702055 AAAAAT AAAAAT AAAAGT AAAAAT -AAAA- CAAAAT AAAATATT AAATAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA-A-T AAA-AAT
* * * *
86702104 ACAAAAT AAGAAAT AAGAAT AATAAT AAGAAT AATAAT -AAAAT AAAGAAT
1 A-AAAAT AA-AAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA-AAT
*
86702154 AATAACAT AATAAT AA
1 AA-AA-AT AAAAAT AA
86702170 TAGTAATAAT
Statistics
Matches: 87, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
5 12 0.14
6 44 0.51
7 18 0.21
8 12 0.14
9 1 0.01
ACGTcount: A:0.73, C:0.03, G:0.04, T:0.20
Consensus pattern (6 bp):
AAAAAT
Found at i:86702076 original size:18 final size:17
Alignment explanation
Indices: 86702034--86702169 Score: 82
Period size: 17 Copynumber: 7.7 Consensus size: 17
86702024 AGCTAATTGT
*
86702034 AAAATCAAATAAAATATA
1 AAAATAAAATAAAA-ATA
*
86702052 CAAA-AAAATAAAAATA
1 AAAATAAAATAAAAATA
* *
86702068 AAAGTAAAA-ATAAAA-C
1 AAAATAAAATA-AAAATA
*
86702084 AAAATAAAATATTAAAT-
1 AAAATAAAATA-AAAATA
*
86702101 AAAACAAAATAAGAAATA
1 AAAATAAAATAA-AAATA
* *
86702119 AGAATAATAATAAGAATA
1 AAAATAA-AATAAAAATA
*
86702137 ATAATAAAATAAAGAATA
1 AAAATAAAATAAA-AATA
86702155 ATAACATAATAATAA
1 A-AA-ATAA-AATAA
86702170 TAGTAATAAT
Statistics
Matches: 92, Mismatches: 15, Indels: 19
0.73 0.12 0.15
Matches are distributed among these distances:
16 14 0.15
17 40 0.43
18 23 0.25
19 6 0.07
20 4 0.04
21 5 0.05
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.20
Consensus pattern (17 bp):
AAAATAAAATAAAAATA
Found at i:86702087 original size:28 final size:28
Alignment explanation
Indices: 86702034--86702155 Score: 83
Period size: 28 Copynumber: 4.2 Consensus size: 28
86702024 AGCTAATTGT
*
86702034 AAAATCAAATAAAATATACAAAAAAATA
1 AAAATAAAATAAAATATACAAAAAAATA
86702062 AAAATAAAAGTAAAA-ATA-AAACAAAATA
1 AAAATAAAA-TAAAATATACAAA-AAAATA
* *
86702090 AAATATTAAATAAAACA-A-AATAAGAAATA
1 AAA-ATAAAATAAAATATACAA-AA-AAATA
* * *
86702119 AGAATAATAATAAGAATA-ATAATAAAATA
1 AAAATAA-AATAA-AATATACAAAAAAATA
86702148 AAGAATAA
1 AA-AATAA
86702156 TAACATAATA
Statistics
Matches: 77, Mismatches: 7, Indels: 18
0.75 0.07 0.18
Matches are distributed among these distances:
27 3 0.04
28 32 0.42
29 30 0.39
30 10 0.13
31 2 0.03
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.19
Consensus pattern (28 bp):
AAAATAAAATAAAATATACAAAAAAATA
Found at i:86702089 original size:10 final size:10
Alignment explanation
Indices: 86702074--86702112 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
86702064 AATAAAAGTA
86702074 AAAATAAAAC
1 AAAATAAAAC
*
86702084 AAAATAAAAT
1 AAAATAAAAC
86702094 ATTAAATAAAAC
1 A--AAATAAAAC
86702106 AAAATAA
1 AAAATAA
86702113 GAAATAAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 16 0.64
12 9 0.36
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (10 bp):
AAAATAAAAC
Found at i:86702125 original size:45 final size:45
Alignment explanation
Indices: 86702040--86702125 Score: 104
Period size: 45 Copynumber: 1.9 Consensus size: 45
86702030 TTGTAAAATC
*
86702040 AAATAAAATATACAAAAAAATAAAAATAAAAGTAAAAATAAAACA
1 AAATAAAATATACAAAAAAATAAAAATAAAAATAAAAATAAAACA
* * *
86702085 AAATAAAATATTA-AATAAAA-CAAAATAAGAAATAAGAATAA
1 AAATAAAATA-TACAAAAAAATAAAAATAA-AAATAAAAATAA
86702126 TAATAAGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
44 7 0.20
45 26 0.74
46 2 0.06
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.17
Consensus pattern (45 bp):
AAATAAAATATACAAAAAAATAAAAATAAAAATAAAAATAAAACA
Found at i:86702129 original size:3 final size:3
Alignment explanation
Indices: 86702115--86702378 Score: 189
Period size: 3 Copynumber: 88.7 Consensus size: 3
86702105 CAAAATAAGA
* * *
86702115 AAT AAG AAT AAT AAT AAG AAT AAT AAT AA- AAT AAAG AAT AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
* * * * * * * *
86702159 CAT AAT AAT AAT AGT AAT AAT AAG CAT GAT AAT ACT AAT ACT AAT ACT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
86702207 AAT ACT AAT AAT AAT AAT AAAT AGT AA- AAT AA- AAT AAT AAT AGT
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
86702251 AAT AAT AAT AAT AAT AAT AAC AAA AAT AAA AAT AAT AGT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
** * * * * *
86702299 GGT AAT AAT AAAT AGT AAT GAT AAT -AT ATT AAT AAC AAT AAT -GT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
** * *
86702343 GTT AAT AAT AAT AAT AAT AATT AAT TAT ACT AAT AA
1 AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AA
86702379 AACAACAAAA
Statistics
Matches: 197, Mismatches: 54, Indels: 20
0.73 0.20 0.07
Matches are distributed among these distances:
2 10 0.05
3 176 0.89
4 11 0.06
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:86703796 original size:44 final size:43
Alignment explanation
Indices: 86703731--86703882 Score: 130
Period size: 44 Copynumber: 3.5 Consensus size: 43
86703721 AATCTGACCT
* * *
86703731 ACTGCAACTTCATAGG-TATAGGATTTATCGTTTTAGTCCGCTCC
1 ACTGCAACTTCA-GGGAGATAGGATTTATCG-TTCAGTCCGCTCC
* * * *
86703775 ACTGCAACTTCAGGGAGATAGGA-TTAGTAGCTTCAATCTGCTCT
1 ACTGCAACTTCAGGGAGATAGGATTTA-TCG-TTCAGTCCGCTCC
** *
86703819 GTTGCAACTTCAGGGAGATAAGATTGGTATC-TTCAGTCCGCTCC
1 ACTGCAACTTCAGGGAGATAGGATT--TATCGTTCAGTCCGCTCC
*
86703863 ACTACAACTTCAGGGAGATA
1 ACTGCAACTTCAGGGAGATA
86703883 AGACTTGCAA
Statistics
Matches: 85, Mismatches: 18, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
43 5 0.06
44 76 0.89
45 1 0.01
46 1 0.01
47 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (43 bp):
ACTGCAACTTCAGGGAGATAGGATTTATCGTTCAGTCCGCTCC
Found at i:86703883 original size:44 final size:44
Alignment explanation
Indices: 86703765--86704555 Score: 313
Period size: 44 Copynumber: 17.8 Consensus size: 44
86703755 TTATCGTTTT
* * * *
86703765 AGTCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTC
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGATTAGTATCTTC
* *** * *
86703809 AATCTGCTCTGTTGCAACTTCAGGGAGATAAGATTGGTATCTTC
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGATTAGTATCTTC
* *
86703853 AGTCCGCTCCACTACAACTTCAGGGAGATAAGACTT-GCAAT-TTC
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGA-TTAG-TATCTTC
* * * **
86703897 A-ACTTGCTCTACTACAACTTCA--GAGATAAGGTTAGTGGCTGT-
1 AGTC-TGCTCCACTACAACTTCAGGGAGATAAGATTAGTATCT-TC
* ** *
86703939 AATCTGCTCCACTACAACTTCAGGGAGATAAGATTCACCATCTTT
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGATT-AGTATCTTC
** * *
86703984 AGTCTGCTCTGCTACAACTTTAGGGAGATAAGACTT-GTAACTTC
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGA-TTAGTATCTTC
* * * ** * * ** * *
86704028 A-ACATGCCCCATTGGAACTTCAGGGGGAGAAG-TT--TGCCATG
1 AGTC-TGCTCCACTACAACTTCAGGGAGATAAGATTAGTATCTTC
* * * ** * *
86704069 A-TCCGCTCTACTACAACTTTAGATAAATAAGATCTGTAATTATAACTTC
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGA--T-T-AGTAT--CTTC
* ** * ** * *
86704118 AATCTATTCCACAACAACTTCAAAGAGATAAGACTAGTAACTTC
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGATTAGTATCTTC
** * * * * * *
86704162 AACCTGCTCTACTGCAACTTCAGAGAGATAAGGTTTGT-T-TTG
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGATTAGTATCTTC
* * * * *
86704204 A-TCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTAATTTATAGCTTC
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGA--T-T-A-GTAT--CTTC
* * * * * * *
86704254 AATCTGTTCTACTGCAACTTCAGGGAAATAAGATTTGCTATCCTC
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGATTAG-TATCTTC
* * *
86704299 AGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTT-GTGTCTTC
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGA-TTAGTATCTTC
** * * * *
86704343 AACCTGCTCCACTGCAACTTCAGGGAGAGAAGGTTTGTTATCTTC
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGATTAG-TATCTTC
* * * *
86704388 -GATCTACTCCGCTGCAACTTCAGGGAGATAAGATCTACTATCTTC
1 AG-TCTGCTCCACTACAACTTCAGGGAGATAAGAT-TAGTATCTTC
* * ** * *
86704433 AGTTTGCTCCATTGTAACCTCAGGGAGATAAGACTT-GTAACTTC
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGA-TTAGTATCTTC
* * ** * * ** *
86704477 AGTCTACTTCACTGTAACTTTAGGGAGATAAGACTAGTGGCTTT
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGATTAGTATCTTC
* *
86704521 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
1 AGTCTGCTCCACTACAACTTCAGGGAGATAAGATT
86704556 CGCCATAATG
Statistics
Matches: 555, Mismatches: 150, Indels: 84
0.70 0.19 0.11
Matches are distributed among these distances:
40 16 0.03
41 35 0.06
42 33 0.06
43 9 0.02
44 254 0.46
45 134 0.24
46 11 0.02
47 6 0.01
48 1 0.00
49 4 0.01
50 25 0.05
51 27 0.05
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (44 bp):
AGTCTGCTCCACTACAACTTCAGGGAGATAAGATTAGTATCTTC
Found at i:86704158 original size:134 final size:136
Alignment explanation
Indices: 86704008--86704258 Score: 335
Period size: 134 Copynumber: 1.9 Consensus size: 136
86703998 CAACTTTAGG
* * * * *
86704008 GAGATAAGACTTGTAACTTCAACATGCCCCATTGGAACTTCAGGGGGAGAA-GTTTGCCATGATC
1 GAGATAAGACTAGTAACTTCAACATGCCCCACTGCAACTTCAGAGAGAGAAGGTTTGCCATGATC
*
86704072 CGCTCTACTACAACTTTAGATAAATAAGATCTGTAA-TTATAACTTCAATCTATTCCACAACAAC
66 CGCTCTACTACAACTTTAGAGAAATAAGATCTGTAATTTATAACTTCAATCTATTCCACAACAAC
86704136 TTCAAA
131 TTCAAA
* * * * ***
86704142 GAGATAAGACTAGTAACTTCAACCTGCTCTACTGCAACTTCAGAGAGATAAGGTTTGTTTTGATC
1 GAGATAAGACTAGTAACTTCAACATGCCCCACTGCAACTTCAGAGAGAGAAGGTTTGCCATGATC
* * * *
86704207 TGCTCTACTGCAACTTTAGAGAGATAAGATCTGTAATTTATAGCTTCAATCT
66 CGCTCTACTACAACTTTAGAGAAATAAGATCTGTAATTTATAACTTCAATCT
86704259 GTTCTACTGC
Statistics
Matches: 98, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
134 42 0.43
135 42 0.43
136 14 0.14
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (136 bp):
GAGATAAGACTAGTAACTTCAACATGCCCCACTGCAACTTCAGAGAGAGAAGGTTTGCCATGATC
CGCTCTACTACAACTTTAGAGAAATAAGATCTGTAATTTATAACTTCAATCTATTCCACAACAAC
TTCAAA
Found at i:86704367 original size:89 final size:88
Alignment explanation
Indices: 86703771--86704555 Score: 394
Period size: 89 Copynumber: 8.8 Consensus size: 88
86703761 TTTTAGTCCG
* * ***
86703771 CTCCACTGCAACTTCAGGGAGATAGGATTAGTAG-CTTCAATCTGCTCTGTTGCAACTTCAGGGA
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGT-GTCTTCAATCTGCTCCACTGCAACTTCAGGGA
* **
86703835 GATAAGATTGGTATCTTCAGTCCG
65 GATAAGATTTGTATCTTCAGTCTA
* * ** * *
86703859 CTCCACTACAACTTCAGGGAGATAAGACTTGCAAT-TTCAA-CTTGCTCTACTACAACTTCA--G
1 CTCCACTGCAACTTCAGGGAGATAAGACTAG-TGTCTTCAATC-TGCTCCACTGCAACTTCAGGG
* * ** * *
86703920 AGATAAGGTTAGTGGCTGT-AATCTG
64 AGATAAGATTTGTATCT-TCAGTCTA
* * *** * * ** * *
86703945 CTCCACTACAACTTCAGGGAGATAAGATTCACCATCTTTAGTCTGCTCTGCTACAACTTTAGGGA
1 CTCCACTGCAACTTCAGGGAGATAAGACT-AGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGA
* * * *
86704010 GATAAGACTTGTAACTTCA-ACATG
65 GATAAGATTTGTATCTTCAGTC-TA
* * * * * * * * * * * * * ** *
86704034 CCCCATTGGAACTTCAGGGGGAGAAG--T-TTGCCAT-GATCCGCTCTACTACAACTTTAGATAA
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAG
* *
86704095 ATAAGATCTGTAATTATAACTTCAATCTA
66 ATAAGAT-T-T--GTAT--CTTCAGTCTA
* ** ** ** * * *
86704124 TTCCACAACAACTTCAAAGAGATAAGACTAGTAACTTCAACCTGCTCTACTGCAACTTCAGAGAG
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAG
* * *
86704189 ATAAGGTTTGT-T-TTGA-TCTG
66 ATAAGATTTGTATCTTCAGTCTA
* * * * * * *
86704209 CTCTACTGCAACTTTAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTTCTACTGCAACTT
1 CTCCACTGCAACTTCAGGGAGATAAGA-C--T-A-GTGT--CTTCAATCTGCTCCACTGCAACTT
* * *
86704274 CAGGGAAATAAGATTTGCTATCCTCAGTCTG
59 CAGGGAGATAAGATTTG-TATCTTCAGTCTA
* * *
86704305 CTCCACTGCAACTTCAAGGAGATAAGACTTGTGTCTTCAACCTGCTCCACTGCAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAG
* *
86704370 AGAAGGTTTGTTATCTTC-GATCTA
66 ATAAGATTTG-TATCTTCAG-TCTA
* * * * * * * *
86704394 CTCCGCTGCAACTTCAGGGAGATAAGATCTACTATCTTCAGTTTGCTCCATTGTAACCTCAGGGA
1 CTCCACTGCAACTTCAGGGAGATAAGA-CTAGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGA
* *
86704459 GATAAGACTTGTAACTTCAGTCTA
65 GATAAGATTTGTATCTTCAGTCTA
* * * * *
86704483 CTTCACTGTAACTTTAGGGAGATAAGACTAGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAG
86704548 ATAAGATT
66 ATAAGATT
86704556 CGCCATAATG
Statistics
Matches: 524, Mismatches: 137, Indels: 72
0.71 0.19 0.10
Matches are distributed among these distances:
84 26 0.05
85 27 0.05
86 53 0.10
87 22 0.04
88 90 0.17
89 140 0.27
90 62 0.12
91 3 0.01
92 38 0.07
93 6 0.01
94 27 0.05
95 3 0.01
96 27 0.05
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (88 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTAGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAG
ATAAGATTTGTATCTTCAGTCTA
Found at i:86710806 original size:8 final size:8
Alignment explanation
Indices: 86710782--86710822 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
86710772 TTGTAAAATC
86710782 AAATAAAA
1 AAATAAAA
*
86710790 TATATAAAA
1 -AAATAAAA
86710799 AAATAAAA
1 AAATAAAA
86710807 AAATAAAA
1 AAATAAAA
*
86710815 AAACAAAA
1 AAATAAAA
86710823 CATTAAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
8 22 0.76
9 7 0.24
ACGTcount: A:0.83, C:0.02, G:0.00, T:0.15
Consensus pattern (8 bp):
AAATAAAA
Found at i:86710836 original size:12 final size:12
Alignment explanation
Indices: 86710819--86710848 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
86710809 ATAAAAAAAC
86710819 AAAACATTAAAT
1 AAAACATTAAAT
86710831 AAAACATTAAAT
1 AAAACATTAAAT
86710843 AAAACA
1 AAAACA
86710849 AAATAAGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20
Consensus pattern (12 bp):
AAAACATTAAAT
Found at i:86710845 original size:16 final size:16
Alignment explanation
Indices: 86710782--86710834 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
86710772 TTGTAAAATC
*
86710782 AAATAAAATATATAAAA
1 AAATAAAAAAT-TAAAA
*
86710799 AAATAAAAAAATAAAA
1 AAATAAAAAATTAAAA
* *
86710815 AAACAAAACATTAAATA
1 AAATAAAAAATTAAA-A
86710832 AAA
1 AAA
86710835 CATTAAATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
16 17 0.57
17 13 0.43
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (16 bp):
AAATAAAAAATTAAAA
Found at i:86710866 original size:3 final size:3
Alignment explanation
Indices: 86710858--86711008 Score: 169
Period size: 3 Copynumber: 50.3 Consensus size: 3
86710848 AAAATAAGAG
* * *
86710858 ATA ATA ATA ATA ATA ATA ATAA AGA ATA ATA A-C ATA AAA ATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA
* ** * * *
86710903 ATA ATA GTA ATA ATA ATA AGC ATG ATA ATA ATA ATA CTA ATA ATA AGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
86710951 ACA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
86710999 ATA CTA ATA A
1 ATA ATA ATA A
86711009 AACAACAAAA
Statistics
Matches: 122, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
2 1 0.01
3 119 0.98
4 2 0.02
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:86710886 original size:42 final size:42
Alignment explanation
Indices: 86710840--86710997 Score: 121
Period size: 42 Copynumber: 3.8 Consensus size: 42
86710830 TAAAACATTA
86710840 AATAA-AACA-AAATAAGAGATAATAATAATAATAATAATAAAG
1 AATAATAACATAAA-AAGA-ATAATAATAATAATAATAATAAAG
* *
86710882 AATAATAACATAAAAATAATAATAATAGTAATAATAAT-AAG
1 AATAATAACATAAAAAGAATAATAATAATAATAATAATAAAG
* * * * * * * * *
86710923 CATGAT-A-ATAATAATACTAATAATAAGAACAATGAT-AAT
1 AATAATAACATAAAAAGAATAATAATAATAATAATAATAAAG
* * *
86710962 AATAATAATAATAATAATAATAATAATAATAATAAT
1 AATAATAA-CATAAAAAGAATAATAATAATAATAAT
86710998 TATACTAATA
Statistics
Matches: 95, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
39 29 0.31
40 2 0.02
41 7 0.07
42 47 0.49
43 7 0.07
44 3 0.03
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27
Consensus pattern (42 bp):
AATAATAACATAAAAAGAATAATAATAATAATAATAATAAAG
Found at i:86711682 original size:17 final size:16
Alignment explanation
Indices: 86711660--86711691 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
86711650 TGTTTCGTAA
86711660 AAAAAAGAAAGAAAAAG
1 AAAAAAGAAA-AAAAAG
86711677 AAAAAAGAAAAAAAA
1 AAAAAAGAAAAAAAA
86711692 CCTTAGCCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAAAGAAAAAAAAG
Found at i:86711683 original size:13 final size:13
Alignment explanation
Indices: 86711658--86711691 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
86711648 ACTGTTTCGT
86711658 AAAAAAAAGAAAG
1 AAAAAAAAGAAAG
86711671 AAAAAGAAA-AAAG
1 AAAAA-AAAGAAAG
86711684 AAAAAAAA
1 AAAAAAAA
86711692 CCTTAGCCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 3 0.15
13 14 0.70
14 3 0.15
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAAAAAGAAAG
Found at i:86712632 original size:25 final size:27
Alignment explanation
Indices: 86712581--86712642 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 27
86712571 GTTGTTTTAC
*
86712581 AATTTTATATATTTTTATAAATTTATA
1 AATTTTATATATTTTTATAAATGTATA
*
86712608 AATTTTA-AT-TTTTTATTAATGTATA
1 AATTTTATATATTTTTATAAATGTATA
* *
86712633 TATTATATAT
1 AATTTTATAT
86712643 TATGAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 19 0.63
26 4 0.13
27 7 0.23
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (27 bp):
AATTTTATATATTTTTATAAATGTATA
Found at i:86713408 original size:25 final size:25
Alignment explanation
Indices: 86713336--86713400 Score: 121
Period size: 25 Copynumber: 2.6 Consensus size: 25
86713326 ACAAAATTAA
*
86713336 ATAGTTAGGTGACCAAAAAAGAATT
1 ATAGTTAGGTGACCAAAAAATAATT
86713361 ATAGTTAGGTGACCAAAAAATAATT
1 ATAGTTAGGTGACCAAAAAATAATT
86713386 ATAGTTAGGTGACCA
1 ATAGTTAGGTGACCA
86713401 TTTTATAACT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.45, C:0.09, G:0.20, T:0.26
Consensus pattern (25 bp):
ATAGTTAGGTGACCAAAAAATAATT
Found at i:86715451 original size:2 final size:2
Alignment explanation
Indices: 86715444--86715476 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
86715434 ATTTGTTTTA
86715444 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
86715477 TATATATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:86716773 original size:56 final size:56
Alignment explanation
Indices: 86716712--86716868 Score: 235
Period size: 56 Copynumber: 2.8 Consensus size: 56
86716702 TATAAACTGT
86716712 TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTAACAG-GATATTA
1 TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTAA-AGAGATATTA
* *
86716768 TAGGATATTATTATGGGATATTATCTATTAGCAATTTGATTCCTAATGAGATATTA
1 TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTAAAGAGATATTA
* * * **
86716824 TAAGATATTATTATGAGATATTATGTTTTAATAATTTGATTCCTA
1 TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTA
86716869 CGTAACTACT
Statistics
Matches: 92, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
55 1 0.01
56 91 0.99
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.45
Consensus pattern (56 bp):
TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTAAAGAGATATTA
Found at i:86718324 original size:28 final size:29
Alignment explanation
Indices: 86718281--86718352 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
86718271 GGGTTTTTTT
* *
86718281 TACCAAAATAGGACAA-AAAATAATAAAA
1 TACCAAAATAGTACAAGAAAAAAATAAAA
* * **
86718309 TACCAAAATAATACAAGAAAAAAATTATG
1 TACCAAAATAGTACAAGAAAAAAATAAAA
86718338 TACCAAAATAGTACA
1 TACCAAAATAGTACA
86718353 TTCAGGGTGG
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 14 0.39
29 22 0.61
ACGTcount: A:0.62, C:0.12, G:0.07, T:0.18
Consensus pattern (29 bp):
TACCAAAATAGTACAAGAAAAAAATAAAA
Found at i:86718612 original size:30 final size:31
Alignment explanation
Indices: 86718577--86718638 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
86718567 GCAAAGCAGC
86718577 AAGGAGAAGA-AGAGAAAAAGAA-AAAAAAAG
1 AAGGAGAAGAGA-AGAAAAAGAAGAAAAAAAG
* *
86718607 AAGGAGAAGAGAAGAAAGAGAAGGAAAAAAG
1 AAGGAGAAGAGAAGAAAAAGAAGAAAAAAAG
86718638 A
1 A
86718639 TAGAAAAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 19 0.68
31 9 0.32
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (31 bp):
AAGGAGAAGAGAAGAAAAAGAAGAAAAAAAG
Found at i:86718648 original size:20 final size:19
Alignment explanation
Indices: 86718583--86718648 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
86718573 CAGCAAGGAG
* *
86718583 AAGAAGAGAAAAAGAAAAAAA
1 AAGAAG-GAAAAA-AGAAGAA
* *
86718604 AAGAAGGAGAAGAGAAGAA
1 AAGAAGGAAAAAAGAAGAA
86718623 AGAGAAGGAAAAAAGATAGAA
1 A-AGAAGGAAAAAAGA-AGAA
86718644 AAGAA
1 AAGAA
86718649 AAGGTATAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
19 6 0.16
20 20 0.54
21 11 0.30
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (19 bp):
AAGAAGGAAAAAAGAAGAA
Found at i:86718746 original size:20 final size:18
Alignment explanation
Indices: 86718684--86718769 Score: 74
Period size: 17 Copynumber: 4.9 Consensus size: 18
86718674 GATTTTTATA
* *
86718684 TTGTTATT-TTGTTTTTG
1 TTGTTATTATTATTGTTG
86718701 TTGTTATTATTATTGTTG
1 TTGTTATTATTATTGTTG
* *
86718719 AT-TT-TTATTGATTCTTG
1 TTGTTATTATT-ATTGTTG
86718736 TTGTTAGTTATTATTG-T-
1 TTGTTA-TTATTATTGTTG
*
86718753 TAGTTATTATTATTGTT
1 TTGTTATTATTATTGTT
86718770 AGTAAAAAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
16 14 0.25
17 23 0.41
18 11 0.20
19 3 0.05
20 5 0.09
ACGTcount: A:0.16, C:0.01, G:0.15, T:0.67
Consensus pattern (18 bp):
TTGTTATTATTATTGTTG
Found at i:86718754 original size:13 final size:13
Alignment explanation
Indices: 86718736--86718763 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
86718726 TTGATTCTTG
86718736 TTGTTAGTTATTA
1 TTGTTAGTTATTA
86718749 TTGTTAGTTATTA
1 TTGTTAGTTATTA
86718762 TT
1 TT
86718764 ATTGTTAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.14, T:0.64
Consensus pattern (13 bp):
TTGTTAGTTATTA
Found at i:86718762 original size:16 final size:16
Alignment explanation
Indices: 86718698--86718772 Score: 73
Period size: 16 Copynumber: 4.5 Consensus size: 16
86718688 TATTTTGTTT
86718698 TTGTT-GTTATTATTA
1 TTGTTAGTTATTATTA
* *
86718713 TTGTTGATTTTTATTGATTC
1 TTGTT-A--GTTATT-ATTA
86718733 TTGTT-GTTAGTTATTA
1 TTGTTAGTTA-TTATTA
86718749 TTGTTAGTTATTATTA
1 TTGTTAGTTATTATTA
86718765 TTGTTAGT
1 TTGTTAGT
86718773 AAAAAAACTA
Statistics
Matches: 49, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
15 5 0.10
16 25 0.51
17 6 0.12
19 5 0.10
20 8 0.16
ACGTcount: A:0.19, C:0.01, G:0.16, T:0.64
Consensus pattern (16 bp):
TTGTTAGTTATTATTA
Found at i:86718763 original size:36 final size:33
Alignment explanation
Indices: 86718684--86718763 Score: 99
Period size: 36 Copynumber: 2.3 Consensus size: 33
86718674 GATTTTTATA
*
86718684 TTGTTATT-TTGTTTTTGTTGTTATTATTATTG
1 TTGTTATTATTGTTCTTGTTGTTATTATTATTG
*
86718716 TTGATTTTTATTGATTCTTGTTGTTAGTTATTATTG
1 TTG-TTATTATTG-TTCTTGTTGTTA-TTATTATTG
86718752 TTAGTTATTATT
1 TT-GTTATTATT
86718764 ATTGTTAGTA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
32 3 0.08
33 4 0.10
34 3 0.08
35 11 0.28
36 18 0.45
37 1 0.03
ACGTcount: A:0.16, C:0.01, G:0.15, T:0.68
Consensus pattern (33 bp):
TTGTTATTATTGTTCTTGTTGTTATTATTATTG
Found at i:86725304 original size:13 final size:13
Alignment explanation
Indices: 86725254--86725317 Score: 58
Period size: 13 Copynumber: 4.7 Consensus size: 13
86725244 TGTTAGTATT
**
86725254 TTTTATTTTCAAA
1 TTTTATTTTTTAA
86725267 TTTTATTTTTTAAAA
1 TTTTATTTTTT--AA
86725282 TATATTATTTTTTAA
1 T-T-TTATTTTTTAA
86725297 TTTTATTTTTT-A
1 TTTTATTTTTTAA
*
86725309 TATTATTTT
1 TTTTATTTT
86725318 AGTACATGAT
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
12 9 0.20
13 18 0.41
14 1 0.02
15 6 0.14
16 1 0.02
17 9 0.20
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTATTTTTTAA
Found at i:86725456 original size:13 final size:13
Alignment explanation
Indices: 86725434--86725469 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
86725424 TTTTTTAAAA
86725434 TATATTATTTTTT
1 TATATTATTTTTT
*
86725447 TATTTTA-TTTTT
1 TATATTATTTTTT
86725459 TATATTATTTT
1 TATATTATTTT
86725470 AGTACATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (13 bp):
TATATTATTTTTT
Found at i:86725468 original size:17 final size:17
Alignment explanation
Indices: 86725418--86725470 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
86725408 TTATTTTCAA
* *
86725418 ATTTTATTTTTTAAAAT
1 ATTTTATTTTTTATATT
*
86725435 ATATTA--TTTT-T-TT
1 ATTTTATTTTTTATATT
86725448 ATTTTATTTTTTATATT
1 ATTTTATTTTTTATATT
86725465 ATTTTA
1 ATTTTA
86725471 GTACATAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
13 6 0.21
15 8 0.29
16 1 0.04
17 13 0.46
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTATTTTTTATATT
Found at i:86725867 original size:149 final size:148
Alignment explanation
Indices: 86725230--86726324 Score: 1351
Period size: 149 Copynumber: 7.5 Consensus size: 148
86725220 TTTTGTTCGG
* * *
86725230 TGATTTTGGCCCTTTGTTAGTATTTTTTATTTTCAAATTTTATTTTTTAAAATATATTATTTTT-
1 TGATTTTGGCACTTTGTTGGTATTTTTTATTTTCAAATTTTATTTTTTAAAATAT-CTATTTTTG
* *
86725294 TAATTTTATTTTTTATATTATTTTAGTACATGATGTTGT--AATGTATTATTTAAGTGTTTTATT
65 T-ATTTTATTTTTTATATTATTTTAGTACATAATGTT-TCAAATGTATTATTTTAGTGTTTT-TT
* *
86725357 ATATTAATTTAATAAATAGCCCC
127 ATATTAATTTAGTAAATA-ACCC
* *
86725380 TGATTTTGGCACTTTGTTGATATTTTTTTTATTTTCAAATTTTATTTTTTAAAATATATTATTTT
1 TGATTTTGGCACTTTGTTGGTA--TTTTTTATTTTCAAATTTTATTTTTTAAAATAT-CTATTTT
* *
86725445 TTTATTTTATTTTTTATATTATTTTAGTACATAATGTTT----TGTATTATTTAAGTGTTTTTTT
63 TGTATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTG-TTTTTT
*
86725506 ATATTAATTTAATAAATAACCC
127 ATATTAATTTAGTAAATAACCC
*
86725528 GGATTTTGGCACTTTGTTGGTA----TT-TTTT---ATTTTATTTTTTAAAATATACTATTTTTG
1 TGATTTTGGCACTTTGTTGGTATTTTTTATTTTCAAATTTTATTTTTTAAAATAT-CTATTTTTG
*
86725585 AATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTA-T-TTTTTTA-A
65 TATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATA
86725647 -TAATTTAGTAAATAACCC
130 TTAATTTAGTAAATAACCC
* * *
86725665 TGATTTTGACACTATGTTGGT-TTTTTTATTTTCGAATTTTATTTTTTGAAAATAT-TATTTTTG
1 TGATTTTGGCACTTTGTTGGTATTTTTTATTTTCAAATTTTATTTTTT-AAAATATCTATTTTTG
* *
86725728 TATTTTATTTTTTTTATATTTTTTTAGTACATAATGTTTCAAATGTATTATTTAAGTGTTTTTTA
65 TATTTTA--TTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTA
*
86725793 TATTAATTTAATAAATAACCC
128 TATTAATTTAGTAAATAACCC
*
86725814 TGATTTTGGCACTTTGTTGGTATTTTTTATTTTCAAATTTTATTTTTTAAAATATACTATTTTCG
1 TGATTTTGGCACTTTGTTGGTATTTTTTATTTTCAAATTTTATTTTTTAAAATAT-CTATTTTTG
*
86725879 TATTTTATTTTTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTTAGTGTTTTTT-T
65 TATTTTA-TTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAT
*
86725943 AATAATTTAGTAAATAACCC
129 ATTAATTTAGTAAATAACCC
*
86725963 TGATTTTGGCACTTTGTTGGTA---TTT-TTTT---ATTTTATTTTTTAAAATATGCTATTTTCG
1 TGATTTTGGCACTTTGTTGGTATTTTTTATTTTCAAATTTTATTTTTTAAAATAT-CTATTTTTG
86726021 TATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTCTA-
65 TATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTT-TAT
86726085 A-TAATTTAGTAAATAACCC
129 ATTAATTTAGTAAATAACCC
* * * ***
86726104 TAATTTTGGTC-TTTTGTTTGTATTTTTTAAATTTTTGGATTTTATTTTTTAAAATATACTATTT
1 TGATTTTGG-CACTTTGTTGGTATTTTTT--ATTTTCAAATTTTATTTTTTAAAATAT-CTATTT
* * *
86726168 TTGCATTTTA-TTTTTATATTATTTTAATACATAATGTTTCAAATGTATCATTTTAGT-TTTTTT
62 TTGTATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTT
* *
86726231 -TAATAATTTAGTAAATAACAC
127 ATATTAATTTAGTAAATAACCC
* * * * **
86726252 TGGTTTTGGCCCTTTGTTTGTGTTTTTTAAATTTTCGGATTTTATTTTTTAAAATATACTATTTT
1 TGATTTTGGCACTTTGTTGGTATTTTTT--ATTTTCAAATTTTATTTTTTAAAATAT-CTATTTT
*
86726317 AGTATTTT
63 TGTATTTT
86726325 TTATATTATT
Statistics
Matches: 858, Mismatches: 46, Indels: 84
0.87 0.05 0.09
Matches are distributed among these distances:
137 35 0.04
138 64 0.07
139 7 0.01
140 2 0.00
141 97 0.11
142 51 0.06
143 14 0.02
144 15 0.02
145 55 0.06
146 4 0.00
147 14 0.02
148 110 0.13
149 164 0.19
150 134 0.16
151 15 0.02
152 76 0.09
153 1 0.00
ACGTcount: A:0.27, C:0.06, G:0.09, T:0.58
Consensus pattern (148 bp):
TGATTTTGGCACTTTGTTGGTATTTTTTATTTTCAAATTTTATTTTTTAAAATATCTATTTTTGT
ATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATAT
TAATTTAGTAAATAACCC
Found at i:86726201 original size:290 final size:292
Alignment explanation
Indices: 86725230--86726324 Score: 1385
Period size: 290 Copynumber: 3.7 Consensus size: 292
86725220 TTTTGTTCGG
* * * *
86725230 TGATTTTGGCCCTTTGTTAGTATTTTTTATTTTCAAATTTTATTTTTTAAAATATATTATTTTTT
1 TGATTTTGGCACTTTGTTGGTATTTTTTATTTTCAAATTTTATTTTTTAAAATATACTATTTTTG
* *
86725295 AATTTTATTTTTTATATTATTTTAGTACATGATGTTGT--AATGTATTATTTAAGTGTTTTATTA
66 AATTTTATTTTTTATATTATTTTAGTACATAATGTT-TCAAATGTATTATTTTAGT-TTTT-TT-
* * * * *
86725358 TATTAATTTAATAAATAGCCCCTGATTTTGGCACTTTGTTGATATTTTTTTTATTTTCAAATTTT
127 TAATAATTTAGTAAATA-ACCCTGATTTTGGCACTTTGTTG----GTTATTTATTTT--AATTTT
* *
86725423 ATTTTTTAAAATATATTATTTTTTTATTTTATTTTTTATATTATTTTAGTACATAATGTTT----
185 ATTTTTTAAAATATACTATTTTTGTATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAA
86725484 TGTATTATTTAAGTGTTTTTTTATATTAATTTAATAAATAACCC
250 TGTATTATTTAAGTG-TTTTTTATATTAATTTAATAAATAACCC
*
86725528 GGATTTTGGCACTTTGTTGGTA----TT-TTTT---ATTTTATTTTTTAAAATATACTATTTTTG
1 TGATTTTGGCACTTTGTTGGTATTTTTTATTTTCAAATTTTATTTTTTAAAATATACTATTTTTG
86725585 AATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTA--TTTTTTTAAT
66 AATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTTAAT
* * *
86725648 AATTTAGTAAATAACCCTGATTTTGACACTATGTTGGTTTTTTTATTTTCGAATTTTATTTTTTG
131 AATTTAGTAAATAACCCTGATTTTGGCACTTTGTTGG-TTATTTATTTT--AATTTTATTTTTT-
*
86725713 AAAATAT--TATTTTTGTATTTTATTTTTTTTATATTTTTTTAGTACATAATGTTTCAAATGTAT
192 AAAATATACTATTTTTGTATTTTA--TTTTTTATATTATTTTAGTACATAATGTTTCAAATGTAT
86725776 TATTTAAGTGTTTTTTATATTAATTTAATAAATAACCC
255 TATTTAAGTGTTTTTTATATTAATTTAATAAATAACCC
*
86725814 TGATTTTGGCACTTTGTTGGTATTTTTTATTTTCAAATTTTATTTTTTAAAATATACTATTTTCG
1 TGATTTTGGCACTTTGTTGGTATTTTTTATTTTCAAATTTTATTTTTTAAAATATACTATTTTTG
* *
86725879 TATTTTATTTTTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTTAGTGTTTTTTTA
66 AATTTTA-TTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGT-TTTTTTTA
86725944 ATAATTTAGTAAATAACCCTGATTTTGGCACTTTGTTGG-TATTT-TTTT-ATTTTATTTTTTAA
129 ATAATTTAGTAAATAACCCTGATTTTGGCACTTTGTTGGTTATTTATTTTAATTTTATTTTTTAA
* *
86726006 AATATGCTATTTTCGTATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATT
194 AATATACTATTTTTGTATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATT
* *
86726071 TTAGTGTTTTTCTA-A-TAATTTAGTAAATAACCC
259 TAAGTGTTTTT-TATATTAATTTAATAAATAACCC
* * * ***
86726104 TAATTTTGGTC-TTTTGTTTGTATTTTTTAAATTTTTGGATTTTATTTTTTAAAATATACTATTT
1 TGATTTTGG-CACTTTGTTGGTATTTTTT--ATTTTCAAATTTTATTTTTTAAAATATACTATTT
* * *
86726168 TTGCATTTTA-TTTTTATATTATTTTAATACATAATGTTTCAAATGTATCATTTTAGTTTTTTTT
63 TTGAATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTT
* * * * *
86726232 AATAATTTAGTAAATAACACTGGTTTTGGCCCTTTGTTTGTGTTTTTTAAATTTTCGGATTTTAT
128 AATAATTTAGTAAATAACCCTGATTTTGGCACTTTG-TTG-GTTATTT--ATTTT--AATTTTAT
*
86726297 TTTTTAAAATATACTATTTTAGTATTTT
187 TTTTTAAAATATACTATTTTTGTATTTT
86726325 TTATATTATT
Statistics
Matches: 716, Mismatches: 44, Indels: 74
0.86 0.05 0.09
Matches are distributed among these distances:
281 14 0.02
282 25 0.03
283 36 0.05
285 20 0.03
286 64 0.09
287 17 0.02
288 4 0.01
289 41 0.06
290 151 0.21
291 79 0.11
292 57 0.08
293 18 0.03
294 36 0.05
295 53 0.07
296 4 0.01
298 97 0.14
ACGTcount: A:0.27, C:0.06, G:0.09, T:0.58
Consensus pattern (292 bp):
TGATTTTGGCACTTTGTTGGTATTTTTTATTTTCAAATTTTATTTTTTAAAATATACTATTTTTG
AATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTTAAT
AATTTAGTAAATAACCCTGATTTTGGCACTTTGTTGGTTATTTATTTTAATTTTATTTTTTAAAA
TATACTATTTTTGTATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTA
AGTGTTTTTTATATTAATTTAATAAATAACCC
Found at i:86726324 original size:148 final size:150
Alignment explanation
Indices: 86725992--86726324 Score: 526
Period size: 148 Copynumber: 2.2 Consensus size: 150
86725982 GTATTTTTTT
* * *
86725992 ATTTTATTTTTTAAAATATGCTATTTTCGTATTTTATTTTTTATATTATTTTAGTACATAATGTT
1 ATTTTATTTTTTAAAATATACTATTTTAGTATTTTATTTTTTATATTATTTTAATACATAATGTT
* * * *
86726057 TCAAATGTATTATTTTAGTGTTTTTCTAATAATTTAGTAAATAACCCTAATTTTGGTCTTTTGTT
66 TCAAATGTATCATTTTAGTGTTTTTCTAATAATTTAGTAAATAACACTAATTTTGGCCCTTTGTT
*
86726122 TGTATTTTTTAAATTTTTGG
131 TGTATTTTTTAAATTTTCGG
* *
86726142 ATTTTATTTTTTAAAATATACTATTTTTGCATTTTA-TTTTTATATTATTTTAATACATAATGTT
1 ATTTTATTTTTTAAAATATACTATTTTAGTATTTTATTTTTTATATTATTTTAATACATAATGTT
* **
86726206 TCAAATGTATCATTTTAGT-TTTTTTTAATAATTTAGTAAATAACACTGGTTTTGGCCCTTTGTT
66 TCAAATGTATCATTTTAGTGTTTTTCTAATAATTTAGTAAATAACACTAATTTTGGCCCTTTGTT
*
86726270 TGTGTTTTTTAAATTTTCGG
131 TGTATTTTTTAAATTTTCGG
86726290 ATTTTATTTTTTAAAATATACTATTTTAGTATTTT
1 ATTTTATTTTTTAAAATATACTATTTTAGTATTTT
86726325 TTATATTATT
Statistics
Matches: 168, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
148 90 0.54
149 45 0.27
150 33 0.20
ACGTcount: A:0.27, C:0.06, G:0.09, T:0.58
Consensus pattern (150 bp):
ATTTTATTTTTTAAAATATACTATTTTAGTATTTTATTTTTTATATTATTTTAATACATAATGTT
TCAAATGTATCATTTTAGTGTTTTTCTAATAATTTAGTAAATAACACTAATTTTGGCCCTTTGTT
TGTATTTTTTAAATTTTCGG
Found at i:86726475 original size:7 final size:7
Alignment explanation
Indices: 86726463--86726487 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
86726453 CCCATCACAT
86726463 AAAAATA
1 AAAAATA
86726470 AAAAATA
1 AAAAATA
86726477 AAAAATA
1 AAAAATA
86726484 AAAA
1 AAAA
86726488 TAATTAGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:86726953 original size:20 final size:20
Alignment explanation
Indices: 86726919--86726974 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
86726909 TCTCACCAGC
86726919 CTCCTTCTCTTTCTTCTTCTT
1 CTCCTTCT-TTTCTTCTTCTT
*
86726940 C-CATTTCTTTTCTTCTTCTT
1 CTC-CTTCTTTTCTTCTTCTT
86726960 CTCCTTCTTTTCTTC
1 CTCCTTCTTTTCTTC
86726975 CCGAAATGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 25 0.81
21 6 0.19
ACGTcount: A:0.02, C:0.36, G:0.00, T:0.62
Consensus pattern (20 bp):
CTCCTTCTTTTCTTCTTCTT
Found at i:86736516 original size:27 final size:28
Alignment explanation
Indices: 86736432--86736529 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
86736422 CATGAGATTG
* * * *
86736432 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
86736461 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
86736489 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
86736516 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
86736530 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:86736540 original size:27 final size:27
Alignment explanation
Indices: 86736460--86736542 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
86736450 TAAATTGTAC
* *
86736460 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
86736488 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
86736515 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
86736542 A
1 A
86736543 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:86736543 original size:29 final size:27
Alignment explanation
Indices: 86736432--86736543 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
86736422 CATGAGATTG
** * *
86736432 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
86736461 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
86736489 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
86736516 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
86736544 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:86744715 original size:40 final size:40
Alignment explanation
Indices: 86744615--86744786 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
86744605 ACTCCTCGTT
* * *
86744615 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
86744655 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
86744694 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
86744734 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
86744774 CAAATGCCTTCGG
1 CAAATGCCTTCGG
86744787 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:86752024 original size:40 final size:40
Alignment explanation
Indices: 86751924--86752095 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
86751914 GCTCCTCGTT
* * *
86751924 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
86751964 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
86752003 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
86752043 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
86752083 CAAATGCCTTCGG
1 CAAATGCCTTCGG
86752096 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:86754443 original size:27 final size:28
Alignment explanation
Indices: 86754359--86754456 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
86754349 CATGAGATTG
* * * *
86754359 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
86754388 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
86754416 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
86754443 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
86754457 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:86754467 original size:27 final size:27
Alignment explanation
Indices: 86754387--86754469 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
86754377 TAAATTGTAC
* *
86754387 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
86754415 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
86754442 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
86754469 A
1 A
86754470 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:86754470 original size:29 final size:27
Alignment explanation
Indices: 86754359--86754470 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
86754349 CATGAGATTG
** * *
86754359 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
86754388 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
86754416 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
86754443 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
86754471 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:86760957 original size:14 final size:14
Alignment explanation
Indices: 86760940--86760969 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
86760930 TTAAAACAAG
*
86760940 AATTAAGAACACAT
1 AATTAAGAACAAAT
86760954 AATTAAGAACAAAT
1 AATTAAGAACAAAT
86760968 AA
1 AA
86760970 AATATTTATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.63, C:0.10, G:0.07, T:0.20
Consensus pattern (14 bp):
AATTAAGAACAAAT
Found at i:86761933 original size:46 final size:46
Alignment explanation
Indices: 86761787--86762008 Score: 192
Period size: 46 Copynumber: 4.8 Consensus size: 46
86761777 CATAGGGTAT
* *
86761787 AATGCCGATGTCATGTCCCAGACATGGTCTTACACT-G-ACACATCTC
1 AATGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTC
* * * *
86761833 -GTAGCCGATGCATGT-CCAAACATGTTTTACACTGGCT-TACATCTC
1 AAT-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTC
* * *
86761878 GAA-GTCGATGCATGTCCCAGACATATCTTACACTAGCTCTCGTCTC
1 -AATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTC
* *
86761924 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCA--T-
1 AATGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTC
86761969 AATGTGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 AA--T-GCCGATGCATGTCCCAGACATGTCTTACACTAGC
86762009 ACACAAATAA
Statistics
Matches: 143, Mismatches: 19, Indels: 28
0.75 0.10 0.15
Matches are distributed among these distances:
43 9 0.06
44 8 0.06
45 27 0.19
46 49 0.34
47 28 0.20
48 22 0.15
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (46 bp):
AATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTC
Found at i:86762304 original size:26 final size:30
Alignment explanation
Indices: 86762264--86762357 Score: 101
Period size: 30 Copynumber: 3.3 Consensus size: 30
86762254 ATTTGACATC
86762264 ACTTTCTCATATACAATATCATCAACATAA
1 ACTTTCTCATATACAATATCATCAACATAA
*
86762294 AC-TT-T-A-ATAC-A-ATCAAGGCAACATAA
1 ACTTTCTCATATACAATATC-A-TCAACATAA
*
86762320 ACTTTCTCATATACAATATCATCAACATCA
1 ACTTTCTCATATACAATATCATCAACATAA
*
86762350 ACATTCTC
1 ACTTTCTC
86762358 TCAAGTACAA
Statistics
Matches: 52, Mismatches: 4, Indels: 16
0.72 0.06 0.22
Matches are distributed among these distances:
24 3 0.06
25 2 0.04
26 14 0.27
27 3 0.06
28 2 0.04
29 3 0.06
30 20 0.38
31 2 0.04
32 3 0.06
ACGTcount: A:0.43, C:0.24, G:0.02, T:0.31
Consensus pattern (30 bp):
ACTTTCTCATATACAATATCATCAACATAA
Found at i:86762977 original size:2 final size:2
Alignment explanation
Indices: 86762972--86763012 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
86762962 TTTCTTTTAA
86762972 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
86763013 TATATATATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:86763806 original size:25 final size:26
Alignment explanation
Indices: 86763757--86763807 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
86763747 CTGTATATAT
86763757 ATGAATATATTTATATATTACTATTA
1 ATGAATATATTTATATATTACTATTA
* * *
86763783 ATGATTATTTTTA-ATATTATTATTA
1 ATGAATATATTTATATATTACTATTA
86763808 TCATTTTGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (26 bp):
ATGAATATATTTATATATTACTATTA
Found at i:86763905 original size:13 final size:11
Alignment explanation
Indices: 86763877--86763911 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
86763867 ATATTATGAA
86763877 TTATATATATT
1 TTATATATATT
86763888 TTATATATATT
1 TTATATATATT
* *
86763899 ATGTATATATT
1 TTATATATATT
86763910 TT
1 TT
86763912 TTAAATATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (11 bp):
TTATATATATT
Found at i:86763905 original size:20 final size:21
Alignment explanation
Indices: 86763821--86763906 Score: 59
Period size: 20 Copynumber: 3.8 Consensus size: 21
86763811 TTTTGAATAT
* *
86763821 ATATATATTGTATGTGT-TTTTC
1 ATATATA-T-TATGTATATTTTA
86763843 ATATATATTATGTATGTATTTTTA
1 ATATATATTATGTA--TA-TTTTA
*
86763867 ATATTATGAATTATATATATTTT-
1 ATA-TAT--ATTATGTATATTTTA
86763890 ATATATATTATGTATAT
1 ATATATATTATGTATAT
86763907 ATTTTTTAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
20 15 0.28
21 1 0.02
22 11 0.21
23 3 0.06
24 11 0.21
25 5 0.09
27 7 0.13
ACGTcount: A:0.34, C:0.01, G:0.08, T:0.57
Consensus pattern (21 bp):
ATATATATTATGTATATTTTA
Found at i:86763913 original size:24 final size:24
Alignment explanation
Indices: 86763750--86764210 Score: 144
Period size: 24 Copynumber: 19.8 Consensus size: 24
86763740 TTTATATCTG
* *
86763750 TATATA-TATGAATATA-TTTATA
1 TATATATTATGTATATATTTTTTA
*
86763772 TATTACTATTAATG-AT-TATTTTTAA
1 TA-TA-TATT-ATGTATATATTTTTTA
* **
86763797 TAT-TATTAT-TAT-CATTTTGAA
1 TATATATTATGTATATATTTTTTA
* * *
86763818 TATATATATATTGTATGTGTTTTTCA
1 TATATAT-TA-TGTATATATTTTTTA
* *
86763844 TATATATTATGTATGTATTTTTAA
1 TATATATTATGTATATATTTTTTA
* *
86763868 TAT-TATGAAT-TATATATATTTTA
1 TATATAT-TATGTATATATTTTTTA
86763891 TATATATTATGTATATATTTTTTAAA
1 TATATATTATGTATATATTTTTT--A
* *
86763917 TATCATACTAT-TCATAT-CTTTTTA
1 TAT-ATATTATGT-ATATATTTTTTA
* *
86763941 TGT-TATCTCATGTATATATTTTTAA
1 TATATAT-T-ATGTATATATTTTTTA
86763966 TAT-TATTA-GTTATATATATTTTTA
1 TATATATTATG-TATATAT-TTTTTA
86763990 TACTAT-TTCATGTATATA-TTTTTA
1 TA-TATATT-ATGTATATATTTTTTA
** *
86764014 TAT-TATCCT-TAT-TA-TTATTA
1 TATATATTATGTATATATTTTTTA
*
86764034 T-TGATATTA-G--TATATGTTTTA
1 TAT-ATATTATGTATATATTTTTTA
* *
86764055 T-TATA-TATGTATATATCTTTAA
1 TATATATTATGTATATATTTTTTA
* * *
86764077 TATATATATAGGTATATA-TTTATG
1 TATATAT-TATGTATATATTTTTTA
*
86764101 TA-ATATTAT-TA-ATAGGTGTTTT-
1 TATATATTATGTATATA--TTTTTTA
* * * ** * *
86764123 TA-ACATTAT-TATTTCTAATATG
1 TATATATTATGTATATATTTTTTA
* *
86764145 TATATATTATGTAAATA-TTTTAA
1 TATATATTATGTATATATTTTTTA
* **
86764168 TATTATATTATATATGCATTTTTTA
1 TA-TATATTATGTATATATTTTTTA
86764193 TATATATTATGTATATAT
1 TATATATTATGTATATAT
86764211 ACCTTTTTAA
Statistics
Matches: 326, Mismatches: 64, Indels: 96
0.67 0.13 0.20
Matches are distributed among these distances:
19 4 0.01
20 17 0.05
21 31 0.10
22 38 0.12
23 54 0.17
24 94 0.29
25 44 0.13
26 33 0.10
27 11 0.03
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.56
Consensus pattern (24 bp):
TATATATTATGTATATATTTTTTA
Found at i:86763988 original size:49 final size:46
Alignment explanation
Indices: 86763761--86764019 Score: 174
Period size: 49 Copynumber: 5.4 Consensus size: 46
86763751 ATATATATGA
* *
86763761 ATATATTTAT-ATATTACTATTA-ATGATTATTTTTA-ATATT-AT-T
1 ATATATTTTTAATATTATTATTATAT-A-TATTTTTATATATTCATGT
* * * * *
86763804 ATTATCATTTTGAATATATATATATTGTATGTGTTTTTCATATATATTATGT
1 A-TAT-ATTTTTAATAT-TAT-TATTATATATATTTTT-ATATAT-TCATGT
* *
86763856 ATGTATTTTTAATATTATGAATTATATATATTTTATATATATT-ATGT
1 ATATATTTTTAATATTAT-TATTATATATATTTT-TATATATTCATGT
* * * *
86763903 ATATATTTTTTAAATATCATACTATT-CATATCTTTTTATGTTATCTCATGT
1 ATATA-TTTTT-AATAT--TATTATTATATATATTTTTAT-ATAT-TCATGT
86763954 ATATATTTTTAATATTATTAGTTATATATATTTTTATACTATTTCATGT
1 ATATATTTTTAATATTATTA-TTATATATATTTTTATA-TA-TTCATGT
86764003 ATATATTTTT-ATATTAT
1 ATATATTTTTAATATTAT
86764020 CCTTATTATT
Statistics
Matches: 170, Mismatches: 23, Indels: 41
0.73 0.10 0.18
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 4 0.02
46 4 0.02
47 20 0.12
48 23 0.14
49 76 0.45
50 22 0.13
51 15 0.09
52 2 0.01
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.58
Consensus pattern (46 bp):
ATATATTTTTAATATTATTATTATATATATTTTTATATATTCATGT
Found at i:86764075 original size:21 final size:20
Alignment explanation
Indices: 86764043--86764083 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
86764033 ATTGATATTA
* *
86764043 GTATATGTTTTATTATATAT
1 GTATATATTTTAATATATAT
86764063 GTATATATCTTTAATATATAT
1 GTATATAT-TTTAATATATAT
86764084 ATAGGTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.56
Consensus pattern (20 bp):
GTATATATTTTAATATATAT
Found at i:86764191 original size:26 final size:25
Alignment explanation
Indices: 86764162--86764229 Score: 73
Period size: 28 Copynumber: 2.6 Consensus size: 25
86764152 TATGTAAATA
* *
86764162 TTTTAATATTATATTATATATGCAT
1 TTTTAATATTATATTATATATACCT
*
86764187 TTTTTATATATATTATGTATATATACCT
1 TTTTAATAT-TA-TAT-TATATATACCT
*
86764215 TTTTAATATTGTATT
1 TTTTAATATTATATT
86764230 TTTATCTATA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
25 9 0.26
26 5 0.14
27 4 0.11
28 17 0.49
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.59
Consensus pattern (25 bp):
TTTTAATATTATATTATATATACCT
Found at i:86764319 original size:29 final size:27
Alignment explanation
Indices: 86764266--86764364 Score: 98
Period size: 25 Copynumber: 3.7 Consensus size: 27
86764256 AATACTATAT
* *
86764266 TATATTTTTTTACATA-T-TATCTTATG
1 TATATATTTTTA-ATACTATATATTATG
86764292 TATATATTTTTTAATAACTATATATTATG
1 TATATA-TTTTTAAT-ACTATATATTATG
* *
86764321 TATGTATTTTTAACA-T-TATATTATG
1 TATATATTTTTAATACTATATATTATG
*
86764346 TACATATTTTTAATACTAT
1 TATATATTTTTAATACTAT
86764365 GTATATACTT
Statistics
Matches: 60, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
25 21 0.35
26 9 0.15
27 9 0.15
28 8 0.13
29 13 0.22
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (27 bp):
TATATATTTTTAATACTATATATTATG
Found at i:86764367 original size:20 final size:21
Alignment explanation
Indices: 86764342--86764385 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
86764332 AACATTATAT
*
86764342 TATGTACATA-TTTTTAATAC
1 TATGTACATACTTTGTAATAC
*
86764362 TATGTATATACTTTGTAATAC
1 TATGTACATACTTTGTAATAC
86764383 TAT
1 TAT
86764386 TATTATGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (21 bp):
TATGTACATACTTTGTAATAC
Found at i:86766832 original size:13 final size:13
Alignment explanation
Indices: 86766816--86766843 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
86766806 CACTTTTAGT
86766816 TTATTATTATTTA
1 TTATTATTATTTA
86766829 TTATTATTATTTA
1 TTATTATTATTTA
86766842 TT
1 TT
86766844 TTTTTGGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TTATTATTATTTA
Found at i:86767221 original size:14 final size:13
Alignment explanation
Indices: 86767202--86767231 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
86767192 CAAACTGTGA
86767202 AAAAAAATAAAAAT
1 AAAAAAAT-AAAAT
86767216 AAAAAAATAAAAT
1 AAAAAAATAAAAT
86767229 AAA
1 AAA
86767232 GAACACACAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (13 bp):
AAAAAAATAAAAT
Done.