Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 256 of 373
Found at i:86769413 original size:21 final size:21
Alignment explanation
Indices: 86769389--86769429 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
86769379 TAATCTGATA
86769389 CTCCACCTACTTTTGATTTTG
1 CTCCACCTACTTTTGATTTTG
*
86769410 CTCCACCTATTTTTGATTTT
1 CTCCACCTACTTTTGATTTT
86769430 CTTTATTGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.15, C:0.27, G:0.07, T:0.51
Consensus pattern (21 bp):
CTCCACCTACTTTTGATTTTG
Found at i:86785803 original size:2 final size:2
Alignment explanation
Indices: 86785791--86785838 Score: 78
Period size: 2 Copynumber: 23.5 Consensus size: 2
86785781 TTTTCTGAAT
*
86785791 GA GA AA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
86785833 TGA GA G
1 -GA GA G
86785839 GAATAAGGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 41 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.48, T:0.02
Consensus pattern (2 bp):
GA
Found at i:86786108 original size:37 final size:37
Alignment explanation
Indices: 86786067--86786186 Score: 95
Period size: 33 Copynumber: 3.2 Consensus size: 37
86786057 TGAGTTGTAT
86786067 ATAATTTTATCTTTTAAAATTTATAATAATTACACCA
1 ATAATTTTATCTTTTAAAATTTATAATAATTACACCA
* * * * * *
86786104 ATAA--TT-T-TTTTAAATTTTATCGGATTATCAAGAGTTCTA
1 ATAATTTTATCTTTTAAAATTTAT--AATAAT-TACA---CCA
86786143 TATAATTTTATCTTTTAAAATTTATAATAATTACACCA
1 -ATAATTTTATCTTTTAAAATTTATAATAATTACACCA
86786181 ATAATT
1 ATAATT
86786187 CTAATTTTAT
Statistics
Matches: 60, Mismatches: 12, Indels: 22
0.64 0.13 0.23
Matches are distributed among these distances:
33 12 0.20
34 1 0.02
35 6 0.10
36 2 0.03
37 10 0.17
38 2 0.03
39 2 0.03
40 4 0.07
41 2 0.03
42 6 0.10
43 1 0.02
44 12 0.20
ACGTcount: A:0.40, C:0.09, G:0.03, T:0.47
Consensus pattern (37 bp):
ATAATTTTATCTTTTAAAATTTATAATAATTACACCA
Found at i:86786151 original size:77 final size:73
Alignment explanation
Indices: 86786058--86786207 Score: 246
Period size: 77 Copynumber: 2.0 Consensus size: 73
86786048 TAAAGAATTT
* *
86786058 GAGTTGTATATAATTTTATCTTTTAAAATTTATAATAATTACACCAATAATTTTTTTAAATTTTA
1 GAGTTCTATATAATTTTATCTTTTAAAATTTATAATAATTACACCAATAA---TTCT-AATTTTA
86786123 TCGGATTATCAA
62 TCGGATTATCAA
86786135 GAGTTCTATATAATTTTATCTTTTAAAATTTATAATAATTACACCAATAATTCTAATTTTATCGG
1 GAGTTCTATATAATTTTATCTTTTAAAATTTATAATAATTACACCAATAATTCTAATTTTATCGG
86786200 ATTATCAA
66 ATTATCAA
86786208 AATTTTTAAG
Statistics
Matches: 71, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
73 19 0.27
74 3 0.04
77 49 0.69
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (73 bp):
GAGTTCTATATAATTTTATCTTTTAAAATTTATAATAATTACACCAATAATTCTAATTTTATCGG
ATTATCAA
Found at i:86788077 original size:22 final size:23
Alignment explanation
Indices: 86788033--86788077 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
86788023 TTTTTCGTAG
** *
86788033 ATTTATATTTTTATTTTTTAAAA
1 ATTTATATTTTTAAATTTAAAAA
86788056 ATTTA-ATTTTTAAATTTAAAAA
1 ATTTATATTTTTAAATTTAAAAA
86788078 TTCAGATTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
ATTTATATTTTTAAATTTAAAAA
Found at i:86788731 original size:14 final size:15
Alignment explanation
Indices: 86788699--86788731 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
86788689 TTTATTTTAA
86788699 AAAATTAAATTAATT
1 AAAATTAAATTAATT
86788714 -AAATTAAATT-ATT
1 AAAATTAAATTAATT
86788727 AAAAT
1 AAAAT
86788732 ATTAACTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 3 0.18
14 14 0.82
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
AAAATTAAATTAATT
Found at i:86789610 original size:17 final size:18
Alignment explanation
Indices: 86789588--86789625 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
86789578 AATTCTAAAT
86789588 GCACA-CCCGTGGGCTAG
1 GCACACCCCGTGGGCTAG
86789605 GCACACCCCCGTGGGCTAG
1 GCACA-CCCCGTGGGCTAG
86789624 GC
1 GC
86789626 CGTGTTCATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.26
19 14 0.74
ACGTcount: A:0.16, C:0.39, G:0.34, T:0.11
Consensus pattern (18 bp):
GCACACCCCGTGGGCTAG
Found at i:86790608 original size:46 final size:47
Alignment explanation
Indices: 86790501--86790719 Score: 179
Period size: 46 Copynumber: 4.7 Consensus size: 47
86790491 GGGTCAGATA
* * *
86790501 CCGATGTCATGTCCCAGACATGGTCTTACACTAACATA--TCTTATAG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTAGCATACGTCTCAAAG
* * * *
86790547 CCGATGCACGTCCCAGACAT-GTCTTACACTAGCTTACGTCTCGAGG
1 CCGATGCATGTCCCAGACATGGTCTTACACTAGCATACGTCTCAAAG
* *
86790593 CCGAAGCATGTCCCAGACAT-GTCTTACACTAGCACT-CGTCTCAATG
1 CCGATGCATGTCCCAGACATGGTCTTACACTAGCA-TACGTCTCAAAG
* * *
86790639 TCGATGCCCTGTCCCAGACATGGTCTTACACTGGC-T-C-TCAT-AATATGG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTAGCATACGTC-TCAA-A--G
* *
86790687 TCGATGCATGTCCCAGATAT-GTCTTACACTAGC
1 CCGATGCATGTCCCAGACATGGTCTTACACTAGC
86790720 TCACACAAGT
Statistics
Matches: 144, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
44 14 0.10
45 17 0.12
46 68 0.47
47 26 0.18
48 19 0.13
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
CCGATGCATGTCCCAGACATGGTCTTACACTAGCATACGTCTCAAAG
Found at i:86802183 original size:40 final size:40
Alignment explanation
Indices: 86802128--86802351 Score: 281
Period size: 40 Copynumber: 5.5 Consensus size: 40
86802118 TATTTGGATG
86802128 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
86802168 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* **
86802211 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGC-TCTTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTT-ACT
** * *
86802251 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
86802291 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
86802331 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
86802352 ATACTTGGGT
Statistics
Matches: 158, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 15 0.09
40 105 0.66
41 2 0.01
43 36 0.23
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:86802271 original size:83 final size:81
Alignment explanation
Indices: 86802132--86802351 Score: 288
Period size: 83 Copynumber: 2.7 Consensus size: 81
86802122 TGGATGATAT
* *
86802132 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTT-ACTATATCTGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTGACTATATCCGGGCTAAGTCCCGAAGGCATTC
*
86802196 GTGCGAGTAGTTG-CTATAC
66 ATGC---TAG-TGACTATAC
**
86802215 CCGGGCTAAGTCCCGAAGGCATTTGTGC-TCTTGACTATATCCGGGCTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTGACTATATCCGGGCTAAGTCCCGAAGGCATTC
*
86802279 ATGCTAGTGACTATAT
66 ATGCTAGTGACTATAC
* * *
86802295 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTGACTATATCCGGGCTAAGTCCCGAAG
86802352 ATACTTGGGT
Statistics
Matches: 124, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
79 16 0.13
80 43 0.35
81 3 0.02
82 2 0.02
83 60 0.48
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTGACTATATCCGGGCTAAGTCCCGAAGGCATTC
ATGCTAGTGACTATAC
Found at i:86810133 original size:40 final size:40
Alignment explanation
Indices: 86810037--86810220 Score: 223
Period size: 40 Copynumber: 4.5 Consensus size: 40
86810027 TATTCGGATG
86810037 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--GT-GTTGCT
* *
86810080 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGC-TCTTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTGTTG-CT
**
86810120 ATATCCGGGCTAAGTCCCGAAGGCATTCATGC-TAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGT-GTTG-CT
* *
86810160 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTGTTGCT
*
86810200 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
86810221 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 16 0.13
40 76 0.61
41 2 0.02
43 31 0.25
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTGTTGCT
Found at i:86811859 original size:78 final size:78
Alignment explanation
Indices: 86811729--86811885 Score: 296
Period size: 78 Copynumber: 2.0 Consensus size: 78
86811719 TACAATCATA
86811729 TGTTTATCTAAATGATATAGGGGAAGAAATTCCTACTATAAAATTCAGATTAGATCATGAAACAT
1 TGTTTATCTAAATGATATAGGGGAAGAAATTCCTACTATAAAATTCAGATTAGATCATGAAACAT
86811794 TTGATATAAACAG
66 TTGATATAAACAG
* *
86811807 TGTTTATCTAAATGATATAGGGGAAGAAATTCCTACTATAAAATTCATATTAGATCATGAACCAT
1 TGTTTATCTAAATGATATAGGGGAAGAAATTCCTACTATAAAATTCAGATTAGATCATGAAACAT
86811872 TTGATATAAACAG
66 TTGATATAAACAG
86811885 T
1 T
86811886 ATTGAATGGG
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (78 bp):
TGTTTATCTAAATGATATAGGGGAAGAAATTCCTACTATAAAATTCAGATTAGATCATGAAACAT
TTGATATAAACAG
Found at i:86812963 original size:16 final size:17
Alignment explanation
Indices: 86812932--86812965 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
86812922 GTATCCTCTC
86812932 TGTAAACAACCTTTCCT
1 TGTAAACAACCTTTCCT
*
86812949 TGTAAA-AATCTTTCCT
1 TGTAAACAACCTTTCCT
86812965 T
1 T
86812966 TAATAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.41
Consensus pattern (17 bp):
TGTAAACAACCTTTCCT
Found at i:86814123 original size:18 final size:18
Alignment explanation
Indices: 86814096--86814130 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
86814086 GATAAATCCT
86814096 AATCAAGGATTTACTCCC
1 AATCAAGGATTTACTCCC
*
86814114 AATCAGGGATTTACTCC
1 AATCAAGGATTTACTCC
86814131 TATATTAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (18 bp):
AATCAAGGATTTACTCCC
Found at i:86818029 original size:16 final size:17
Alignment explanation
Indices: 86818008--86818041 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
86817998 TTTTTTATTA
86818008 AAGGAAAGATT-TTTAC
1 AAGGAAAGATTGTTTAC
*
86818024 AAGGAAAGGTTGTTTAC
1 AAGGAAAGATTGTTTAC
86818041 A
1 A
86818042 GAGAGGATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.41, C:0.06, G:0.24, T:0.29
Consensus pattern (17 bp):
AAGGAAAGATTGTTTAC
Found at i:86819682 original size:21 final size:20
Alignment explanation
Indices: 86819653--86819691 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
86819643 CATAATATCC
86819653 TTAATTAGGA-TAGAATCCTG
1 TTAATTAGGAGTA-AATCCTG
86819673 TTAATATAGGAGTAAATCC
1 TTAAT-TAGGAGTAAATCC
86819692 CTGATTGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.29
21 10 0.59
22 2 0.12
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.33
Consensus pattern (20 bp):
TTAATTAGGAGTAAATCCTG
Found at i:86819704 original size:18 final size:18
Alignment explanation
Indices: 86819681--86819715 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
86819671 TGTTAATATA
86819681 GGAGTAAATCCCTGATTG
1 GGAGTAAATCCCTGATTG
*
86819699 GGAGTAAATCCTTGATT
1 GGAGTAAATCCCTGATT
86819716 AGGATTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (18 bp):
GGAGTAAATCCCTGATTG
Found at i:86827923 original size:16 final size:15
Alignment explanation
Indices: 86827884--86827935 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
86827874 TCAAATTATC
*
86827884 AAAATAATAATAATTA
1 AAAATAACAA-AATTA
**
86827900 AATTTAACATAAATTA
1 AAAATAACA-AAATTA
*
86827916 AAAATAACAAAATTT
1 AAAATAACAAAATTA
86827931 AAAAT
1 AAAAT
86827936 TTCATCTTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
15 10 0.34
16 18 0.62
17 1 0.03
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (15 bp):
AAAATAACAAAATTA
Found at i:86840938 original size:40 final size:40
Alignment explanation
Indices: 86840883--86841189 Score: 540
Period size: 40 Copynumber: 7.9 Consensus size: 40
86840873 GCATTTGTAT
*
86840883 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
86840923 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
86840963 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
*
86841003 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
86841043 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
86841083 ATATATCCGGGCTAAGA-CCG-AGGCA-TTGTGCGAG-TG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
86841119 --ATAT-CGGGCTAAGA-CCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
86841155 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCG
1 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCG
86841190 TTATTTGGTG
Statistics
Matches: 257, Mismatches: 3, Indels: 14
0.94 0.01 0.05
Matches are distributed among these distances:
33 13 0.05
34 9 0.04
35 9 0.04
36 4 0.02
37 9 0.04
38 9 0.04
39 13 0.05
40 191 0.74
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.24
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
Found at i:86841279 original size:38 final size:39
Alignment explanation
Indices: 86841203--86841364 Score: 247
Period size: 38 Copynumber: 4.2 Consensus size: 39
86841193 TTTGGTGCGG
*
86841203 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCA
1 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCA
86841242 TTGTGCGAGTTGATATATCC-GGCTAAGACCCGAAGGCA
1 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCA
*
86841280 TTGTGCAAG-TGATATATCCGGGCTAAGACCCGAAGGCA
1 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCA
* **
86841318 TTCGTGCGAGTTGCTATGCCCGGGCTAAGACCCGAAGGCAA
1 TT-GTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGC-A
86841359 TTGTGC
1 TTGTGC
86841365 TTGTGGTAAT
Statistics
Matches: 113, Mismatches: 6, Indels: 7
0.90 0.05 0.06
Matches are distributed among these distances:
37 10 0.09
38 45 0.40
39 26 0.23
40 29 0.26
41 3 0.03
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (39 bp):
TTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCA
Found at i:86849588 original size:40 final size:40
Alignment explanation
Indices: 86849533--86850046 Score: 893
Period size: 40 Copynumber: 12.8 Consensus size: 40
86849523 GCATTTGTAT
86849533 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
86849573 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
86849613 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
86849653 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
86849693 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
86849733 ATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
86849773 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
86849813 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
86849853 ATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
86849893 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
86849933 ATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
86849973 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* ** *
86850013 CTATGCCCGGGCTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
86850047 TTGTGGTAAT
Statistics
Matches: 452, Mismatches: 22, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 452 1.00
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:86851582 original size:49 final size:49
Alignment explanation
Indices: 86851423--86851618 Score: 248
Period size: 50 Copynumber: 3.9 Consensus size: 49
86851413 GGGCGTTACA
*
86851423 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * * *
86851473 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGATCAAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * * *
86851524 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
**
86851573 TATCCGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
86851619 TCACAATAGA
Statistics
Matches: 122, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
49 41 0.34
50 44 0.36
51 37 0.30
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:86857594 original size:22 final size:22
Alignment explanation
Indices: 86857567--86857644 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
86857557 TTAGTACTAC
86857567 ACACGTGACCTAACCATCTGAT
1 ACACGTGACCTAACCATCTGAT
* * *
86857589 ACACGTAGTAGCCTGCACTTAGTACT-AC
1 ACACGT-G-A-CCT-AAC-CA-T-CTGAT
86857617 ACACGTGACCTAACCATCTGAT
1 ACACGTGACCTAACCATCTGAT
86857639 ACACGT
1 ACACGT
86857645 AGTAGCCTGC
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 14 0.33
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 8 0.19
29 2 0.05
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (22 bp):
ACACGTGACCTAACCATCTGAT
Found at i:86857611 original size:50 final size:50
Alignment explanation
Indices: 86857495--86857728 Score: 308
Period size: 50 Copynumber: 4.7 Consensus size: 50
86857485 ATAGTACGCA
* * * ** * *
86857495 TAGTAGCCTGCACTTAGTACTACATATGCGACC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
86857544 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
86857594 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
* * ** * * * *
86857644 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CCATCTGATACACG
*
86857695 TAGTAGCCTGCACTTAGTACTAAACACGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
86857729 CACAATAGAT
Statistics
Matches: 165, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
49 30 0.18
50 96 0.58
51 39 0.24
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
Found at i:86859245 original size:14 final size:14
Alignment explanation
Indices: 86859226--86859255 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
86859216 AAATTTTTTA
86859226 TTCCTAATCATGTT
1 TTCCTAATCATGTT
86859240 TTCCTAATCATGTT
1 TTCCTAATCATGTT
86859254 TT
1 TT
86859256 TAGTTGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (14 bp):
TTCCTAATCATGTT
Found at i:86870375 original size:28 final size:28
Alignment explanation
Indices: 86870334--86870389 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
86870324 AGATTGTGTG
*
86870334 ACTTCATGGAGTACTAGTTTTGATCATA
1 ACTTCATGGAGTACCAGTTTTGATCATA
*
86870362 ACTTCATGGGGTACCAGTTTTGATCATA
1 ACTTCATGGAGTACCAGTTTTGATCATA
86870390 TCTGATAGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.38
Consensus pattern (28 bp):
ACTTCATGGAGTACCAGTTTTGATCATA
Found at i:86872431 original size:21 final size:21
Alignment explanation
Indices: 86872391--86872520 Score: 98
Period size: 21 Copynumber: 6.2 Consensus size: 21
86872381 ATACACCAAC
* *
86872391 AGAAGCTCGTAAAAGTTGAAT
1 AGAAGCTCGTAAGAGCTGAAT
* *
86872412 AGAAGCTCGTAAGACCTGAAA
1 AGAAGCTCGTAAGAGCTGAAT
* *
86872433 AGAAGCTCATAAGAGCTAAAT
1 AGAAGCTCGTAAGAGCTGAAT
* ** * * *
86872454 AGAAACTTATAAGAGTTTAAC
1 AGAAGCTCGTAAGAGCTGAAT
* *
86872475 AGAAGCTCATAAGAGCTGAAC
1 AGAAGCTCGTAAGAGCTGAAT
* ** *
86872496 AAAAGCTTATAAAAGCTGAAT
1 AGAAGCTCGTAAGAGCTGAAT
86872517 AGAA
1 AGAA
86872521 AGTAAAACAC
Statistics
Matches: 87, Mismatches: 22, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 87 1.00
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (21 bp):
AGAAGCTCGTAAGAGCTGAAT
Found at i:86876096 original size:40 final size:40
Alignment explanation
Indices: 86876005--86876174 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
86875995 TCCTCGTTCA
* * * * *
86876005 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
86876044 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
86876084 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
86876124 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
86876164 AAGGCCTTCGG
1 AATGCCTTCGG
86876175 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:86882440 original size:37 final size:37
Alignment explanation
Indices: 86882385--86882455 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
86882375 TTAATGAAGC
*
86882385 TTAGTAAGTTCGATGGTTTAGAA-AAAAATCTTATTTG
1 TTAGTAAGTTCGACGGTTTA-AACAAAAATCTTATTTG
86882422 TTAGTAAGTTCGACGGTTTAAACAAAAATCTTAT
1 TTAGTAAGTTCGACGGTTTAAACAAAAATCTTAT
86882456 CCAACATATT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
36 2 0.06
37 30 0.94
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (37 bp):
TTAGTAAGTTCGACGGTTTAAACAAAAATCTTATTTG
Found at i:86882744 original size:21 final size:21
Alignment explanation
Indices: 86882708--86882830 Score: 124
Period size: 21 Copynumber: 6.0 Consensus size: 21
86882698 TGAATACACC
** * *
86882708 AACAGAAGCTTGTAAGAGTTG
1 AACAGAAGCTCATAAGAGCTA
*
86882729 AATAGAAGCTCATAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
*
86882750 AACAGAAGCTC-GAA-AGCTA
1 AACAGAAGCTCATAAGAGCTA
* *
86882769 AACAGAAACTCGTAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* * * *
86882790 AACAAAAACTCATAAGAGTTG
1 AACAGAAGCTCATAAGAGCTA
86882811 AACAGAAGCTCATAAGAGCT
1 AACAGAAGCTCATAAGAGCT
86882831 GACCAATAAG
Statistics
Matches: 84, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
19 15 0.18
20 4 0.05
21 65 0.77
ACGTcount: A:0.46, C:0.16, G:0.20, T:0.17
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTA
Found at i:86883008 original size:17 final size:18
Alignment explanation
Indices: 86882981--86883015 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
86882971 CCAATTCTAT
86882981 ATTATAATTCCAACAATA
1 ATTATAATTCCAACAATA
*
86882999 ATTA-AATTCCAATAATA
1 ATTATAATTCCAACAATA
86883016 GAATAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.34
Consensus pattern (18 bp):
ATTATAATTCCAACAATA
Found at i:86887253 original size:2 final size:2
Alignment explanation
Indices: 86887246--86887292 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
86887236 TCTTGCTTCT
86887246 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
86887288 AC AC A
1 AC AC A
86887293 ATAAGGAATC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:86890251 original size:20 final size:18
Alignment explanation
Indices: 86890226--86890262 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
86890216 ATTGCTAAGT
86890226 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
86890246 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
86890263 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:86892536 original size:29 final size:28
Alignment explanation
Indices: 86892500--86892577 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
86892490 TCATGAGATT
86892500 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
86892530 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
86892557 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
86892578 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:86892796 original size:175 final size:174
Alignment explanation
Indices: 86892530--86892858 Score: 595
Period size: 175 Copynumber: 1.9 Consensus size: 174
86892520 AAATTGTACA
*
86892530 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
86892595 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
86892660 TTTTGGACAGCGGAAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGG-AAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
86892705 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
86892770 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
86892835 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
86892859 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
174 11 0.07
175 137 0.93
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:86896876 original size:28 final size:28
Alignment explanation
Indices: 86896844--86896907 Score: 119
Period size: 28 Copynumber: 2.3 Consensus size: 28
86896834 CGTGTCAATG
86896844 GCCCGTGTCCCTCACACAGCCACGACAC
1 GCCCGTGTCCCTCACACAGCCACGACAC
*
86896872 GCCCGTGTCCCTCACACTGCCACGACAC
1 GCCCGTGTCCCTCACACAGCCACGACAC
86896900 GCCCGTGT
1 GCCCGTGT
86896908 GCAAAAACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.17, C:0.48, G:0.20, T:0.14
Consensus pattern (28 bp):
GCCCGTGTCCCTCACACAGCCACGACAC
Found at i:86897980 original size:46 final size:46
Alignment explanation
Indices: 86897905--86898108 Score: 223
Period size: 46 Copynumber: 4.4 Consensus size: 46
86897895 GCCATGTTCT
* * *
86897905 AAACATGGTCTTACACTGACTATCATCTCGTAGCCAATGCATGTCTC
1 AAACAT-GTCTTACACTGGCTATCATCTCGTAGCCGATGCATGTCCC
*
86897952 AAACATGTCTTACACTGGCTTAT-GTCTCGTAGCCGATGCATGTCCC
1 AAACATGTCTTACACTGGC-TATCATCTCGTAGCCGATGCATGTCCC
* * * *** *
86897998 AGACATGTCTCATACTGGCTATCATAAAGTGGCCGATGCATGTCCC
1 AAACATGTCTTACACTGGCTATCATCTCGTAGCCGATGCATGTCCC
* * * *
86898044 AAACATGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCT
1 AAACATGTCTTACACTGGCTATCAT-CTCGTAGCCGATGCATGTCCC
*
86898090 AGACATGTCTTACACTGGC
1 AAACATGTCTTACACTGGC
86898109 CCACACACAA
Statistics
Matches: 135, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
45 3 0.02
46 122 0.90
47 10 0.07
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (46 bp):
AAACATGTCTTACACTGGCTATCATCTCGTAGCCGATGCATGTCCC
Found at i:86898482 original size:30 final size:30
Alignment explanation
Indices: 86898441--86898498 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
86898431 AAATTCACAT
* *
86898441 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
86898471 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
86898499 TACTCGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:86918532 original size:18 final size:18
Alignment explanation
Indices: 86918509--86918626 Score: 87
Period size: 18 Copynumber: 6.6 Consensus size: 18
86918499 TTTATCAGTT
86918509 TCATTCAGTAACAATCAA
1 TCATTCAGTAACAATCAA
* *
86918527 TCATTCAATAACAA-CTAG
1 TCATTCAGTAACAATC-AA
* * *
86918545 TCATTCAATAATATTCAA
1 TCATTCAGTAACAATCAA
** *
86918563 TCACTT-TTTAACAGTCAA
1 TCA-TTCAGTAACAATCAA
* * *
86918581 TTATTCAGTAACGATAAA
1 TCATTCAGTAACAATCAA
*
86918599 TTATTCAGTAACAATCAA
1 TCATTCAGTAACAATCAA
*
86918617 TTATTCAGTA
1 TCATTCAGTA
86918627 GCAGTTAGTT
Statistics
Matches: 79, Mismatches: 17, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
17 3 0.04
18 73 0.92
19 3 0.04
ACGTcount: A:0.42, C:0.18, G:0.06, T:0.35
Consensus pattern (18 bp):
TCATTCAGTAACAATCAA
Found at i:86918638 original size:18 final size:18
Alignment explanation
Indices: 86918599--86918680 Score: 94
Period size: 18 Copynumber: 4.6 Consensus size: 18
86918589 TAACGATAAA
* * *
86918599 TTATTCAGTAACAATCAA
1 TTATTCAGTAGCAGTCAG
*
86918617 TTATTCAGTAGCAGTTAG
1 TTATTCAGTAGCAGTCAG
*
86918635 TTA-TCGAGTAACAGTCAG
1 TTATTC-AGTAGCAGTCAG
*
86918653 TTATTCAGTAGTAGTCAG
1 TTATTCAGTAGCAGTCAG
86918671 TTATTCAGTA
1 TTATTCAGTA
86918681 CCTTTATTTA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
17 2 0.04
18 50 0.93
19 2 0.04
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (18 bp):
TTATTCAGTAGCAGTCAG
Found at i:86918663 original size:36 final size:35
Alignment explanation
Indices: 86918571--86918680 Score: 114
Period size: 36 Copynumber: 3.1 Consensus size: 35
86918561 AATCACTTTT
* *
86918571 TAACAGTCAATTATTCAGTAAC-GATAAATTATTCAG
1 TAACAGTCAATTATTCAGTAGCAG-TAAGTTA-TCAG
* *
86918607 TAACAATCAATTATTCAGTAGCAGTTAGTTATCGAG
1 TAACAGTCAATTATTCAGTAGCAGTAAGTTATC-AG
* * *
86918643 TAACAGTCAGTTATTCAGTAGTAGTCAGTTATTCAG
1 TAACAGTCAATTATTCAGTAGCAGTAAGTTA-TCAG
86918679 TA
1 TA
86918681 CCTTTATTTA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
35 2 0.03
36 58 0.92
37 3 0.05
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (35 bp):
TAACAGTCAATTATTCAGTAGCAGTAAGTTATCAG
Found at i:86918802 original size:6 final size:6
Alignment explanation
Indices: 86918787--86918816 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
86918777 GAAATACATC
*
86918787 GTAACG GTAACA GTAACA GTAACA GTAACA
1 GTAACA GTAACA GTAACA GTAACA GTAACA
86918817 ATAGTGGTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.47, C:0.17, G:0.20, T:0.17
Consensus pattern (6 bp):
GTAACA
Found at i:86918905 original size:51 final size:53
Alignment explanation
Indices: 86918801--86918919 Score: 143
Period size: 51 Copynumber: 2.3 Consensus size: 53
86918791 CGGTAACAGT
* * *
86918801 AACAGTAACAGTAACAATAGTGGTACGCAGAGTACCTCATCGGAATAAATCCGG
1 AACAGTAACAGTAACAATAGAGGTACG-AGAGTACCTCATCGAAACAAATCCGG
* * *
86918855 AACAGTAACAGTAACAGTA-AGGTACG-GAGTACCTCTTCGAAACGAATCCGG
1 AACAGTAACAGTAACAATAGAGGTACGAGAGTACCTCATCGAAACAAATCCGG
* *
86918906 AATAGTAGCAGTAA
1 AACAGTAACAGTAA
86918920 GGCGACACTT
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
51 33 0.58
53 6 0.11
54 18 0.32
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.18
Consensus pattern (53 bp):
AACAGTAACAGTAACAATAGAGGTACGAGAGTACCTCATCGAAACAAATCCGG
Found at i:86919625 original size:17 final size:15
Alignment explanation
Indices: 86919597--86919630 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
86919587 TTCCTATTTC
86919597 TCCCTTTTCTTTCTT
1 TCCCTTTTCTTTCTT
86919612 TCCCTTTTTACTTTCTT
1 TCCC-TTTT-CTTTCTT
86919629 TC
1 TC
86919631 TTTCTCCCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 4 0.24
17 9 0.53
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.65
Consensus pattern (15 bp):
TCCCTTTTCTTTCTT
Found at i:86921500 original size:25 final size:25
Alignment explanation
Indices: 86921468--86921537 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
86921458 CTCTTTTAAT
*
86921468 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
86921493 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
86921518 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
86921538 AGCACTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:86921826 original size:53 final size:53
Alignment explanation
Indices: 86921752--86921922 Score: 240
Period size: 53 Copynumber: 3.2 Consensus size: 53
86921742 TAATTTTACC
* * *
86921752 CAAGGGTATCTTGGTAATTCTATCATACA-GGGTAATTTCAGTATTTCTACCCTA
1 CAAGGGTAT-TTGGTAATTCTACCCTACAGGGGT-ATTTCAGTAATTCTACCCTA
*
86921806 CAAGGGTATTTAGTAATTCTACCCTACAGGGGTATTT-AGTAATTCTACCCTA
1 CAAGGGTATTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTA
86921858 CAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC-GATAATTCTACCCTA
1 CAAGGGTATTT-GGTAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCCTA
*
86921912 CAGGGGTATTT
1 CAAGGGTATTT
86921923 CGATATTTTA
Statistics
Matches: 107, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
52 25 0.23
53 46 0.43
54 36 0.34
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (53 bp):
CAAGGGTATTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTA
Found at i:86921827 original size:26 final size:26
Alignment explanation
Indices: 86921752--86921922 Score: 209
Period size: 27 Copynumber: 6.4 Consensus size: 26
86921742 TAATTTTACC
* * *
86921752 CAAGGGTATCTTGGTAATTCTATCATA
1 CAAGGGTAT-TTAGTAATTCTACCCTA
*
86921779 C-AGGGTAATTTCAGTATTTCTACCCTA
1 CAAGGGT-ATTT-AGTAATTCTACCCTA
86921806 CAAGGGTATTTAGTAATTCTACCCTA
1 CAAGGGTATTTAGTAATTCTACCCTA
*
86921832 CAGGGGTATTTAGTAATTCTACCCTA
1 CAAGGGTATTTAGTAATTCTACCCTA
*
86921858 CAAGGGTATTTCGGTAATTCTACCCTA
1 CAAGGGTATTT-AGTAATTCTACCCTA
* *
86921885 CAGGGGTATTTCGATAATTCTACCCTA
1 CAAGGGTATTTAG-TAATTCTACCCTA
*
86921912 CAGGGGTATTT
1 CAAGGGTATTT
86921923 CGATATTTTA
Statistics
Matches: 129, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
26 57 0.44
27 67 0.52
28 5 0.04
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CAAGGGTATTTAGTAATTCTACCCTA
Found at i:86921991 original size:27 final size:26
Alignment explanation
Indices: 86921917--86921991 Score: 123
Period size: 26 Copynumber: 2.8 Consensus size: 26
86921907 CCCTACAGGG
86921917 GTATTTCGATATTTTACAAATCGAGA
1 GTATTTCGATATTTTACAAATCGAGA
*
86921943 GTAATTCGATATTTTACAAATCGAGA
1 GTATTTCGATATTTTACAAATCGAGA
*
86921969 GTATTTCGATAATTTCACAAATC
1 GTATTTCGAT-ATTTTACAAATC
86921992 AGGGGTATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
26 34 0.76
27 11 0.24
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.37
Consensus pattern (26 bp):
GTATTTCGATATTTTACAAATCGAGA
Found at i:86921999 original size:27 final size:26
Alignment explanation
Indices: 86921885--86922201 Score: 241
Period size: 27 Copynumber: 11.8 Consensus size: 26
86921875 TTCTACCCTA
* **
86921885 CAGGGGTATTTCGATAATTCTACCCTA-
1 CAGGGGTATTT-GATAATTTTA-CAAAC
*
86921912 CAGGGGTATTTCGAT-ATTTTACAAAT
1 CAGGGGTATTT-GATAATTTTACAAAC
* * *
86921938 C-GAGAGTAATTCGAT-ATTTTACAAAT
1 CAG-GGGT-ATTTGATAATTTTACAAAC
* * *
86921964 C-GAGAGTATTTCGATAATTTCACAAAT
1 CAG-GGGTATTT-GATAATTTTACAAAC
* *
86921991 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAGGGGTA-TTTGATAATTTTACAAAC
*
86922018 CAGGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTGA-TAATTTTACAAAC
* *
86922045 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAGGGGTA-TTTGATAATTTTACAAAC
*
86922072 CAGGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTGA-TAATTTTACAAAC
* ** *
86922099 CAGGGGTATTTTGGTAATTTTACTGAT
1 CAGGGGTA-TTTGATAATTTTACAAAC
* *
86922126 C-GAGGGTATTTGGTAATTTTACAAGC
1 CAG-GGGTATTTGATAATTTTACAAAC
*
86922152 CAGGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTGA-TAATTTTACAAAC
*
86922179 CAGGGGTATTTTGGTAATTTTAC
1 CAGGGGTA-TTTGATAATTTTAC
86922202 TGATCGAAGG
Statistics
Matches: 240, Mismatches: 35, Indels: 30
0.79 0.11 0.10
Matches are distributed among these distances:
25 6 0.03
26 63 0.26
27 158 0.66
28 13 0.05
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (26 bp):
CAGGGGTATTTGATAATTTTACAAAC
Found at i:86922154 original size:134 final size:135
Alignment explanation
Indices: 86921994--86922254 Score: 409
Period size: 134 Copynumber: 1.9 Consensus size: 135
86921984 CACAAATCAG
86921994 GGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
* ** *
86922059 TAATTTTAC-AAGCCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACT
66 TAATTTTACTAAGCCA-AGGTATTTTAGTAATTTTACAAACCAAAGGTATTTTAGTAATTTTACT
86922123 GATCGA
130 GATCGA
86922129 GGGTA-TTTGGTAATTTTACAAGCCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
* * * * **
86922193 TAATTTTACTGATCGAAGGTATTTTGGTAATTTTGTAAACCAAAGGTATTTTAGTAATTTTA
66 TAATTTTACTAAGCCAAGGTATTTTAGTAATTTTACAAACCAAAGGTATTTTAGTAATTTTA
86922255 TAAATCGAGG
Statistics
Matches: 115, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
134 107 0.93
135 8 0.07
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (135 bp):
GGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
TAATTTTACTAAGCCAAGGTATTTTAGTAATTTTACAAACCAAAGGTATTTTAGTAATTTTACTG
ATCGA
Found at i:86922258 original size:27 final size:27
Alignment explanation
Indices: 86921969--86922254 Score: 335
Period size: 27 Copynumber: 10.6 Consensus size: 27
86921959 CAAATCGAGA
* * * *
86921969 GTATTTCGATAATTTCACAAATCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
86921996 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
86922023 GTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
86922050 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
86922077 GTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
** *
86922104 GTATTTTGGTAATTTTACTGATC-GAGG
1 GTATTTTGGTAATTTTACAAACCAG-GG
*
86922131 GTA-TTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
86922157 GTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
** * *
86922184 GTATTTTGGTAATTTTACTGATC-GAAG
1 GTATTTTGGTAATTTTACAAACCAG-GG
** **
86922211 GTATTTTGGTAATTTTGTAAACCAAAG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
86922238 GTATTTTAGTAATTTTA
1 GTATTTTGGTAATTTTA
86922255 TAAATCGAGG
Statistics
Matches: 220, Mismatches: 34, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
26 22 0.10
27 198 0.90
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACCAGGG
Found at i:86922394 original size:27 final size:27
Alignment explanation
Indices: 86921927--86922414 Score: 276
Period size: 27 Copynumber: 18.1 Consensus size: 27
86921917 GTATTTCGAT
* * * *
86921927 ATTTTACAAATCGAGAGTAATTCGAT-
1 ATTTTACAAATCGAGGGTATTTTGGTA
* * *
86921953 ATTTTACAAATCGAGAGTATTTCGATA
1 ATTTTACAAATCGAGGGTATTTTGGTA
*
86921980 ATTTCACAAATC-AGGGGTATTTTGGTA
1 ATTTTACAAATCGA-GGGTATTTTGGTA
* * *
86922007 ATTTTAC-AAGCCAGGGGTATTTTAGTA
1 ATTTTACAAATCGA-GGGTATTTTGGTA
*
86922034 ATTTTACAAA-CCAGGGGTATTTTGGTA
1 ATTTTACAAATCGA-GGGTATTTTGGTA
* * *
86922061 ATTTTAC-AAGCCAGGGGTATTTTAGTA
1 ATTTTACAAATCGA-GGGTATTTTGGTA
*
86922088 ATTTTACAAA-CCAGGGGTATTTTGGTA
1 ATTTTACAAATCGA-GGGTATTTTGGTA
**
86922115 ATTTTACTGATCGAGGGTA-TTTGGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
* * *
86922141 ATTTTAC-AAGCCAGGGGTATTTTAGTA
1 ATTTTACAAATCGA-GGGTATTTTGGTA
*
86922168 ATTTTACAAA-CCAGGGGTATTTTGGTA
1 ATTTTACAAATCGA-GGGTATTTTGGTA
** *
86922195 ATTTTACTGATCGAAGGTATTTTGGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
** * * * *
86922222 ATTTTGTAAACCAAAGGTATTTTAGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
* *****
86922249 ATTTTATAAATCGAGGGTGA-AACAATA
1 ATTTTACAAATCGAGGGT-ATTTTGGTA
* * ***
86922276 ATTCTATAAATCGAGGGTAAAATGGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
* * ***
86922303 ATTCTATAAATCGAGGGTAAAATGGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
* ** *** *
86922330 ATTCTGTAAATCGAGGGTAAAATAGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
* ** *
86922357 ATTCTGTAAATCGAGGGTACTTTGGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
* * **
86922384 ATTTTACAAATTGAGGGCATTTCAGTA
1 ATTTTACAAATCGAGGGTATTTTGGTA
86922411 ATTT
1 ATTT
86922415 GGTAAACTAA
Statistics
Matches: 393, Mismatches: 56, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
25 3 0.01
26 51 0.13
27 328 0.83
28 11 0.03
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (27 bp):
ATTTTACAAATCGAGGGTATTTTGGTA
Found at i:86924573 original size:31 final size:29
Alignment explanation
Indices: 86924494--86924576 Score: 87
Period size: 29 Copynumber: 2.8 Consensus size: 29
86924484 TTCATTCTCG
** *
86924494 ACATATACTGGGCCGAAGCCTTTTTTTTA
1 ACATATACTGGGCCGAAGCCTTTTCATAA
**
86924523 ACAGT-TACTGGGCTAAAGCCTTTTCATAA
1 ACA-TATACTGGGCCGAAGCCTTTTCATAA
86924552 ATCATATCACTGGGCCGAAGCCTTT
1 A-CATAT-ACTGGGCCGAAGCCTTT
86924577 ACTGTAAATG
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
29 24 0.56
30 4 0.09
31 15 0.35
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.33
Consensus pattern (29 bp):
ACATATACTGGGCCGAAGCCTTTTCATAA
Found at i:86924825 original size:25 final size:25
Alignment explanation
Indices: 86924797--86924866 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
86924787 CTCTTTTAAT
*
86924797 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
86924822 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
86924847 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
86924867 AGCACTTCCT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:86925309 original size:27 final size:27
Alignment explanation
Indices: 86925069--86925309 Score: 265
Period size: 27 Copynumber: 9.0 Consensus size: 27
86925059 CGGGCAAAAT
* *
86925069 GGTAATTTTACCC-A-A-GGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
86925093 GGTAATTCTATCATACA-GGGTAATTTC
1 GGTAATTCTACCCTACAGGGGT-ATTTC
* * * * *
86925120 AGTATTTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
86925147 AGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
86925174 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
86925201 GGTAATTCTACCCTACAGGGTTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
86925228 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
86925255 GATAATTCTACCCTACAGAGGTGTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
86925282 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
86925309 G
1 G
86925310 ATATTTTACA
Statistics
Matches: 185, Mismatches: 28, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
24 10 0.05
25 1 0.01
26 5 0.03
27 165 0.89
28 4 0.02
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:86925381 original size:27 final size:27
Alignment explanation
Indices: 86925298--86925426 Score: 143
Period size: 27 Copynumber: 4.8 Consensus size: 27
86925288 TCTACCCTAT
* * *
86925298 AGGGGTATTTCGAT-ATTTTACAAATC
1 AGGGGTATTTTGGTAATTTTACAAACC
* * * * * *
86925324 AAGAGTATTTCGATAATTTCACAAATC
1 AGGGGTATTTTGGTAATTTTACAAACC
* *
86925351 AGGGGTATTTTGGTAATTTTACAAGCT
1 AGGGGTATTTTGGTAATTTTACAAACC
*
86925378 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
86925405 AGGGGTATTTTGGTAATTTTAC
1 AGGGGTATTTTGGTAATTTTAC
86925427 TGATCGAGGT
Statistics
Matches: 87, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
26 12 0.14
27 75 0.86
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:86925395 original size:54 final size:53
Alignment explanation
Indices: 86925337--86925449 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 53
86925327 AGTATTTCGA
* * *
86925337 TAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGCTAGGGGTATTTTAG
1 TAATTTCACAAACCAGGGGTATTTTGGTAATTTTAC-AGATAGAGGTATTTTAG
* * *
86925391 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGATCGAGGTATTTTAG
1 TAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAGATAGAGGTATTTTAG
86925444 TAATTT
1 TAATTT
86925450 TTTAAACCAA
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 19 0.36
54 34 0.64
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (53 bp):
TAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAGATAGAGGTATTTTAG
Found at i:86925451 original size:27 final size:27
Alignment explanation
Indices: 86925312--86925477 Score: 115
Period size: 27 Copynumber: 6.2 Consensus size: 27
86925302 GTATTTCGAT
* *
86925312 ATTTTACAAATCA-AGAGTA-TTTCGATA
1 ATTTTACAAACCAGAG-GTATTTTAG-TA
* * * *
86925339 ATTTCACAAATCAGGGGTATTTTGGTA
1 ATTTTACAAACCAGAGGTATTTTAGTA
* * *
86925366 ATTTTACAAGCTAGGGGTATTTTAGTA
1 ATTTTACAAACCAGAGGTATTTTAGTA
* *
86925393 ATTTTACAAACCAGGGGTATTTTGGTA
1 ATTTTACAAACCAGAGGTATTTTAGTA
** *
86925420 ATTTTACTGATC-GAGGTATTTTAGTA
1 ATTTTACAAACCAGAGGTATTTTAGTA
** * *
86925446 ATTTTTTAAACCA-AGGGTGTTTCAGTA
1 ATTTTACAAACCAGA-GGTATTTTAGTA
86925473 ATTTT
1 ATTTT
86925478 GTAAATCGAG
Statistics
Matches: 112, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 20 0.18
27 87 0.78
28 5 0.04
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.41
Consensus pattern (27 bp):
ATTTTACAAACCAGAGGTATTTTAGTA
Found at i:86925458 original size:53 final size:54
Alignment explanation
Indices: 86925337--86925477 Score: 167
Period size: 53 Copynumber: 2.6 Consensus size: 54
86925327 AGTATTTCGA
* * * *
86925337 TAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGCTAGGGGTATTTTAG
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGATAGAGGTATTTTAG
* *
86925391 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC-TGATCGAGGTATTTTAG
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGATAGAGGTATTTTAG
** * * **
86925444 TAATTTTTTAAACCAAGGGTGTTTCAGTAATTTT
1 TAATTTTACAAACCAGGGGTATTTTGGTAATTTT
86925478 GTAAATCGAG
Statistics
Matches: 75, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
53 41 0.55
54 34 0.45
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (54 bp):
TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGATAGAGGTATTTTAG
Found at i:86925610 original size:27 final size:27
Alignment explanation
Indices: 86925470--86925599 Score: 197
Period size: 27 Copynumber: 4.8 Consensus size: 27
86925460 GGGTGTTTCA
* * * *
86925470 GTAATTTTGTAAATCGAGGGTGAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
86925497 GTAATTCTATAAACCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
86925524 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
86925551 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
*
86925578 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
86925600 CTTTTGTAAT
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:86928416 original size:39 final size:39
Alignment explanation
Indices: 86928366--86928446 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
86928356 GTTGTTTAAG
*
86928366 AGTATAATTAGGTCATGTTAAATACCATTGAAGTCTTTA
1 AGTATAATTAGGTCATGTTAAATACCATTGAAGTCTCTA
*
86928405 AGTATAATTAGGTCATGTTAAATACCATTGGAGTCTCTA
1 AGTATAATTAGGTCATGTTAAATACCATTGAAGTCTCTA
86928444 AGT
1 AGT
86928447 GAGTATAGAG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (39 bp):
AGTATAATTAGGTCATGTTAAATACCATTGAAGTCTCTA
Found at i:86931283 original size:50 final size:50
Alignment explanation
Indices: 86931208--86931428 Score: 221
Period size: 50 Copynumber: 4.6 Consensus size: 50
86931198 ACATCAAAGT
86931208 CGATGCCATGT-CCAGACATGGTCTTACACTGACTCTCATATATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGC
* * * * *
86931257 CGATGCCATGTCCCAGACATGATCTTACACTGGCTCTCATCTGTTG-GTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAG-GC
* * * * * * *
86931307 CAATGCCATGTCCCAAATATGGTCTTACACTGA----CACATCTC-AAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGC
* * *
86931352 CGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATA-AT-GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGC
86931400 CGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
86931429 AGCACACATA
Statistics
Matches: 137, Mismatches: 27, Indels: 19
0.75 0.15 0.10
Matches are distributed among these distances:
45 29 0.21
46 14 0.10
47 13 0.09
48 7 0.05
49 15 0.11
50 59 0.43
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGC
Found at i:86936858 original size:30 final size:30
Alignment explanation
Indices: 86936824--86936937 Score: 219
Period size: 30 Copynumber: 3.8 Consensus size: 30
86936814 TATATTAGGG
*
86936824 TTGCTCAGACAAGCTGACATTATAGCAGAA
1 TTGCTCACACAAGCTGACATTATAGCAGAA
86936854 TTGCTCACACAAGCTGACATTATAGCAGAA
1 TTGCTCACACAAGCTGACATTATAGCAGAA
86936884 TTGCTCACACAAGCTGACATTATAGCAGAA
1 TTGCTCACACAAGCTGACATTATAGCAGAA
86936914 TTGCTCACACAAGCTGACATTATA
1 TTGCTCACACAAGCTGACATTATA
86936938 TTGAAGTTAC
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
30 83 1.00
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.25
Consensus pattern (30 bp):
TTGCTCACACAAGCTGACATTATAGCAGAA
Found at i:86937327 original size:21 final size:20
Alignment explanation
Indices: 86937296--86937335 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
86937286 CCTTAGAAAC
86937296 AGGGCACACGC-CTGTGTGGA
1 AGGGCACACGCTC-GTGTGGA
86937316 AGGGCAACACGCTCGTGTGG
1 AGGGC-ACACGCTCGTGTGG
86937336 CCATAAGGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 12 0.67
22 1 0.06
ACGTcount: A:0.20, C:0.25, G:0.40, T:0.15
Consensus pattern (20 bp):
AGGGCACACGCTCGTGTGGA
Found at i:86939115 original size:30 final size:28
Alignment explanation
Indices: 86939075--86939131 Score: 69
Period size: 30 Copynumber: 2.0 Consensus size: 28
86939065 TAGACCATAT
86939075 TTTGGCAAAATGACCATTTTGCCCCTAGGC
1 TTTGGCAAAATGACCA-TTTG-CCCTAGGC
* * *
86939105 TTTGGTAAAATTACGATTTGCCCTAGG
1 TTTGGCAAAATGACCATTTGCCCTAGG
86939132 TTCGTAAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 7 0.29
29 4 0.17
30 13 0.54
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (28 bp):
TTTGGCAAAATGACCATTTGCCCTAGGC
Found at i:86959323 original size:20 final size:20
Alignment explanation
Indices: 86959278--86959314 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
86959268 TACATGCTAA
86959278 TTAA-CATGGTTTAATTAAG
1 TTAATCATGGTTTAATTAAG
*
86959297 TTAATCATGTTTTAATTA
1 TTAATCATGGTTTAATTA
86959315 CTTTAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.35, C:0.05, G:0.11, T:0.49
Consensus pattern (20 bp):
TTAATCATGGTTTAATTAAG
Found at i:86962349 original size:43 final size:43
Alignment explanation
Indices: 86962237--86962342 Score: 133
Period size: 43 Copynumber: 2.5 Consensus size: 43
86962227 TTACCGAGAT
** * *
86962237 GTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTACC
1 GTGATTATGTGTAAGACCATGTCTGGGACATCGGCATCGTACC
* *
86962280 GTGATTATGAGTAAGACCATGTCTGGGACATCGGCATCGTTA-T
1 GTGATTATGTGTAAGACCATGTCTGGGACATCGGCATCG-TACC
*
86962323 GTGATTTTGTGTAAGACCAT
1 GTGATTATGTGTAAGACCAT
86962343 AGCTGGGCTA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
43 52 0.96
44 2 0.04
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
GTGATTATGTGTAAGACCATGTCTGGGACATCGGCATCGTACC
Found at i:86964377 original size:36 final size:36
Alignment explanation
Indices: 86964332--86964410 Score: 104
Period size: 36 Copynumber: 2.2 Consensus size: 36
86964322 ATTGTCTCAA
** *
86964332 CGAGCTTTCTCTCATTCTTTCTTTATGCTTCCGTAGC
1 CGAG-TTTCTCTCATTCTTTCTCCATGCTACCGTAGC
* *
86964369 CGAGTTTCTTTCATTCTTTCTCCATGCTACCTTAGC
1 CGAGTTTCTCTCATTCTTTCTCCATGCTACCGTAGC
86964405 CGAGTT
1 CGAGTT
86964411 ATGGTCTTCG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
36 33 0.89
37 4 0.11
ACGTcount: A:0.13, C:0.29, G:0.14, T:0.44
Consensus pattern (36 bp):
CGAGTTTCTCTCATTCTTTCTCCATGCTACCGTAGC
Found at i:86966237 original size:37 final size:37
Alignment explanation
Indices: 86966187--86966257 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
86966177 TTTAGCTCGA
*
86966187 ATAATCCCCACACGTAGTCACCGGGTCTTACCCGGGC
1 ATAATCCCCACACGTAGCCACCGGGTCTTACCCGGGC
* *
86966224 ATAATCTCCACACGTAGCCATCGGGTCTTACCCG
1 ATAATCCCCACACGTAGCCACCGGGTCTTACCCG
86966258 AAATATATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.23, C:0.37, G:0.20, T:0.21
Consensus pattern (37 bp):
ATAATCCCCACACGTAGCCACCGGGTCTTACCCGGGC
Found at i:86977043 original size:28 final size:28
Alignment explanation
Indices: 86976990--86977043 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
86976980 GTAATAGCAT
* * * *
86976990 AGTGTGGGCCTTAGCCCAATATAGTAAC
1 AGTGTAGGCCTAAGCCCAACACAGTAAC
86977018 AGTGTAGGCCTAAGCCCAACACAGTA
1 AGTGTAGGCCTAAGCCCAACACAGTA
86977044 TCAGAATCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.20
Consensus pattern (28 bp):
AGTGTAGGCCTAAGCCCAACACAGTAAC
Found at i:86977812 original size:27 final size:27
Alignment explanation
Indices: 86977782--86977976 Score: 116
Period size: 27 Copynumber: 7.2 Consensus size: 27
86977772 CAAAACAGTC
** *
86977782 ATTTTACCCTATAAGGGTATTTTGATA
1 ATTTTACCAAATAAGGGTATTTCGATA
* * *
86977809 ATTTTA-CACTACAAGTGTATTTCGATA
1 ATTTTACCA-AATAAGGGTATTTCGATA
*
86977836 ATTTTA-CAAATCAGGGGTATTTCGATA
1 ATTTTACCAAAT-AAGGGTATTTCGATA
* * *
86977863 ATTTTA-CAAATTGAGGATATTTTGATA
1 ATTTTACCAAA-TAAGGGTATTTCGATA
*
86977890 ATTTTA-CAAACTGAGGGTATTTC-AGTA
1 ATTTTACCAAA-TAAGGGTATTTCGA-TA
* * *
86977917 ATTTTA-CAATCTTAGGGTAATTCGATA
1 ATTTTACCAA-ATAAGGGTATTTCGATA
* * * *
86977944 ATTTTA-CAAACTGAGGCTATTTTGGTA
1 ATTTTACCAAA-TAAGGGTATTTCGATA
86977971 ATTTTA
1 ATTTTA
86977977 TAAATCAGAG
Statistics
Matches: 137, Mismatches: 24, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
26 3 0.02
27 132 0.96
28 2 0.01
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (27 bp):
ATTTTACCAAATAAGGGTATTTCGATA
Found at i:86977884 original size:54 final size:54
Alignment explanation
Indices: 86977826--86977976 Score: 173
Period size: 54 Copynumber: 2.8 Consensus size: 54
86977816 ACTACAAGTG
86977826 TATTTCGATAATTTTACAAATCAG-GGGTATTTC-GATAATTTTACAAAT-TGAGGA
1 TATTTCGATAATTTTACAAA-CAGAGGGTATTTCAG-TAATTTTAC-AATCTGAGGA
* * * *
86977880 TATTTTGATAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAATCTTAGGG
1 TATTTCGATAATTTTACAAACAGAGGGTATTTCAGTAATTTTACAATCTGAGGA
* * * **
86977934 TAATTCGATAATTTTACAAACTGAGGCTATTTTGGTAATTTTA
1 TATTTCGATAATTTTACAAACAGAGGGTATTTCAGTAATTTTA
86977977 TAAATCAGAG
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
53 5 0.06
54 79 0.93
55 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (54 bp):
TATTTCGATAATTTTACAAACAGAGGGTATTTCAGTAATTTTACAATCTGAGGA
Found at i:86977919 original size:81 final size:80
Alignment explanation
Indices: 86977799--86977976 Score: 227
Period size: 81 Copynumber: 2.2 Consensus size: 80
86977789 CCTATAAGGG
* * *
86977799 TATTTTGATAATTTTACACTACAAGTGTATTTCGATAATTTTACAAATC-AGGGGTATTTCGATA
1 TATTTTGATAATTTTACACAACAAGGGTATTTCGATAATTTTAC-AATCTA-GGGTAATTCGATA
*
86977863 ATTTTACAAATTGAGGA
64 ATTTTACAAACTGAGGA
*
86977880 TATTTTGATAATTTTACA-AACTGAGGGTATTTC-AGTAATTTTACAATCTTAGGGTAATTCGAT
1 TATTTTGATAATTTTACACAAC-AAGGGTATTTCGA-TAATTTTACAATC-TAGGGTAATTCGAT
*
86977943 AATTTTACAAACTGAGGC
63 AATTTTACAAACTGAGGA
*
86977961 TATTTTGGTAATTTTA
1 TATTTTGATAATTTTA
86977977 TAAATCAGAG
Statistics
Matches: 86, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
80 7 0.08
81 78 0.91
82 1 0.01
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (80 bp):
TATTTTGATAATTTTACACAACAAGGGTATTTCGATAATTTTACAATCTAGGGTAATTCGATAAT
TTTACAAACTGAGGA
Found at i:86978217 original size:17 final size:18
Alignment explanation
Indices: 86978195--86978230 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
86978185 TTTATCCGTG
*
86978195 TGGGCCCAC-TAGCCCAT
1 TGGGCCCACACAGCCCAT
86978212 TGGGCCCACACAGCCCAT
1 TGGGCCCACACAGCCCAT
86978230 T
1 T
86978231 TTAGCCCATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.19, C:0.42, G:0.22, T:0.17
Consensus pattern (18 bp):
TGGGCCCACACAGCCCAT
Found at i:86984795 original size:30 final size:30
Alignment explanation
Indices: 86984761--86984822 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
86984751 TGCGATACCG
*
86984761 AGATAGCTTTGGTTTAATGTGATAGCACTA
1 AGATAGCTTCGGTTTAATGTGATAGCACTA
86984791 AGATAGCTTCGGTTTAATGTGATAGCACTA
1 AGATAGCTTCGGTTTAATGTGATAGCACTA
86984821 AG
1 AG
86984823 TGTGCGATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (30 bp):
AGATAGCTTCGGTTTAATGTGATAGCACTA
Found at i:86999638 original size:9 final size:9
Alignment explanation
Indices: 86999621--86999652 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
86999611 GGTAGACCAT
*
86999621 CGAGAAATG
1 CGAGTAATG
86999630 CGAGTAATG
1 CGAGTAATG
86999639 CGAGTAATG
1 CGAGTAATG
86999648 CGAGT
1 CGAGT
86999653 GGCAGTCAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.19
Consensus pattern (9 bp):
CGAGTAATG
Found at i:87004481 original size:53 final size:52
Alignment explanation
Indices: 87004352--87004530 Score: 204
Period size: 53 Copynumber: 3.4 Consensus size: 52
87004342 ATTAGGGTTT
*
87004352 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGATTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGG-CATTGGTAA-G-TTCTAAGGC
* * *
87004407 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTC-TAAGGC
* * * *
87004460 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT-TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCT-AAGGC
*
87004509 AAGGATACCACGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
87004531 AAAAGTCATG
Statistics
Matches: 110, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
49 21 0.19
51 1 0.01
52 5 0.05
53 45 0.41
54 7 0.06
55 31 0.28
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.20
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTAAGGC
Found at i:87004764 original size:16 final size:16
Alignment explanation
Indices: 87004743--87004773 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87004733 ATAAATTTGA
87004743 TTAAGTAAGTCAGTAT
1 TTAAGTAAGTCAGTAT
*
87004759 TTAAGTAAGTGAGTA
1 TTAAGTAAGTCAGTA
87004774 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.03, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTCAGTAT
Found at i:87010959 original size:40 final size:40
Alignment explanation
Indices: 87010861--87011123 Score: 246
Period size: 40 Copynumber: 6.6 Consensus size: 40
87010851 TCCTCGTTCA
* * * *
87010861 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* *
87010900 AATGCCTTCGGGACATAACCCGGATTTAACAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
*
87010940 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* * * *
87010980 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* * * * * *
87011020 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCACACG
** * * * *
87011060 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAACTCA-CACG
* *
87011100 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
87011124 CAGCATTCAA
Statistics
Matches: 194, Mismatches: 24, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
39 40 0.21
40 144 0.74
41 10 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
Found at i:87011083 original size:80 final size:81
Alignment explanation
Indices: 87010826--87011123 Score: 233
Period size: 80 Copynumber: 3.7 Consensus size: 81
87010816 AAATCACGTA
* * ** * * *
87010826 CCTTCGGGATTTAA-CCGGATATAGCTC-C-TCGTTCAAATGCCTTCGGGACATAGCCCGG-TTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTTAGCACAAA-GCCTTCGGGACTTAACCCGGAATT
* *
87010887 TAGTAACTCACAC-AATG
64 TAATAACTCGCACAAATG
* * * * *
87010904 CCTTCGGGACATAACCCGGATTTA-ACAACTCA-CACGAATGCCTTCGGGACTTAACCCGG-ATT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTTAGCAC-AAAGCCTTCGGGACTTAACCCGGAATT
*
87010966 TAATAACTCGCACGAATG
64 TAATAACTCGCACAAATG
* * *
87010984 CCTTCGGGACTTAACCCGGATTTAGT-A-TCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATT
1 CCTTCGGGACTTAACCCGGATATAGTCACT-TAGCACAAA-GCCTTCGGGACTTAACCCGGAATT
* *
87011047 T-GTATCTCGCACAAATG
64 TAATAACTCGCACAAATG
** * *
87011064 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
87011124 CAGCATTCAA
Statistics
Matches: 176, Mismatches: 30, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
77 1 0.01
78 13 0.07
79 47 0.27
80 101 0.57
81 13 0.07
82 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (81 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGAATTTA
ATAACTCGCACAAATG
Found at i:87011083 original size:120 final size:119
Alignment explanation
Indices: 87010861--87011123 Score: 289
Period size: 120 Copynumber: 2.2 Consensus size: 119
87010851 TCCTCGTTCA
* * *
87010861 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
87010926 TAACAACTCACACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAACAACTCACACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
87010979 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
** * * ** * *
87011044 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAACAACTCACACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
87011100 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
87011124 CAGCATTCAA
Statistics
Matches: 119, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
119 37 0.31
120 73 0.61
121 9 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAACAACTCACACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:87011132 original size:41 final size:41
Alignment explanation
Indices: 87011055--87011132 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
87011045 TTTGTATCTC
* * *
87011055 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
87011096 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
87011133 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:87018026 original size:40 final size:40
Alignment explanation
Indices: 87017970--87018241 Score: 445
Period size: 40 Copynumber: 6.8 Consensus size: 40
87017960 AACATTGGAT
87017970 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
87018010 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
87018050 TATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
87018090 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
87018130 TATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
87018170 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTCA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
87018210 TATGTCCGGGTTAAGACCCGAAGGCAAATATG
1 TATATCCGGGCTAAGACCCGAAGGCAATTATG
87018242 TTTGCGGCTG
Statistics
Matches: 214, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:87026765 original size:40 final size:40
Alignment explanation
Indices: 87026709--87027020 Score: 498
Period size: 40 Copynumber: 7.8 Consensus size: 40
87026699 AACATTGGAT
87026709 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
87026749 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
87026789 TATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
87026829 TATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
87026869 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * * *
87026909 TATATCCAGGCTATGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
87026949 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTCA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
87026989 TATGTCCGGGTTAAGACCCGAAGGCAAATATG
1 TATATCCGGGCTAAGACCCGAAGGCAATTATG
87027021 TTTGCGGCTG
Statistics
Matches: 252, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 252 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:87046988 original size:43 final size:42
Alignment explanation
Indices: 87046920--87047083 Score: 159
Period size: 43 Copynumber: 3.9 Consensus size: 42
87046910 TCTGAGATAT
* * * *
87046920 GATTTCGTGTAAGACCACGTTTGGGACGTTGGCATCAACTTGA
1 GATTTCGTGTAAGACCATGTCTGGGACATTGGCATCAA-TTAA
* * *
87046963 GATTTCGTGTAAGACCGTGTCTGGGACATTTGCATCGATTAAA
1 GATTTCGTGTAAGACCATGTCTGGGACATTGGCATCAATT-AA
* * * * *
87047006 GATTACGTGTAAGACCATGTCTGGGACATCGACATCGTATTTA
1 GATTTCGTGTAAGACCATGTCTGGGACATTGGCATC-AATTAA
* * *
87047049 -ATTTCATGTAAGACCCTGTCTGGGACAGTGGCATC
1 GATTTCGTGTAAGACCATGTCTGGGACATTGGCATC
87047084 GTTATTGATT
Statistics
Matches: 99, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
42 31 0.31
43 65 0.66
44 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATGTCTGGGACATTGGCATCAATTAA
Found at i:87047103 original size:42 final size:41
Alignment explanation
Indices: 87046970--87047104 Score: 128
Period size: 42 Copynumber: 3.2 Consensus size: 41
87046960 TGAGATTTCG
* * ** *
87046970 TGTAAGACCGTGTCTGGGACATTTGCATCGATTAAAGATTACG
1 TGTAAGACCATGTCTGGGACA-TGGCATCG-TTATTGATTACA
* * *
87047013 TGTAAGACCATGTCTGGGACATCGACATCG-TATTTAATTTCA
1 TGTAAGACCATGTCTGGGACAT-GGCATCGTTA-TTGATTACA
*
87047055 TGTAAGACCCTGTCTGGGACAGTGGCATCGTTATTGATTACA
1 TGTAAGACCATGTCTGGGACA-TGGCATCGTTATTGATTACA
*
87047097 TATAAGAC
1 TGTAAGAC
87047105 TACGTTTGTG
Statistics
Matches: 75, Mismatches: 13, Indels: 9
0.77 0.13 0.09
Matches are distributed among these distances:
41 2 0.03
42 45 0.60
43 28 0.37
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGACATGGCATCGTTATTGATTACA
Found at i:87057893 original size:40 final size:40
Alignment explanation
Indices: 87057849--87058020 Score: 204
Period size: 40 Copynumber: 4.3 Consensus size: 40
87057839 AGACTAAGAT
*
87057849 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
* *
87057889 CCGAAGGCCTTTGTCCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * ** *
87057929 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
87057969 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
87058008 CCGAAGGCATTTG
1 CCGAAGGCATTTG
87058021 AACGAGGAGC
Statistics
Matches: 114, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 33 0.29
40 78 0.68
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:87058038 original size:79 final size:79
Alignment explanation
Indices: 87057876--87058053 Score: 189
Period size: 79 Copynumber: 2.3 Consensus size: 79
87057866 AGATACAAAT
* * * *
87057876 TCCGGGTTAAGCCCCGAAGGCCTTTGTCCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTTGT-CGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** ** *
87057941 GTGCGAGTTGTTAAA
65 GAACGAGGAGCTAAA
* * * *
87057956 TCCGGGTTATGTCCCGAAGGCATTGTGT-GAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATT-TGTCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
87058020 GAACGAGGAGCTATA
65 GAACGAGGAGCTAAA
*
87058035 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
87058054 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 14 0.17
79 43 0.53
80 21 0.26
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
AACGAGGAGCTAAA
Found at i:87071578 original size:27 final size:26
Alignment explanation
Indices: 87071519--87071652 Score: 137
Period size: 27 Copynumber: 5.0 Consensus size: 26
87071509 AGGAAGTGTC
* * *
87071519 CTGGTGGCTATGCCACAATTTATCTAAT
1 CTGGTGGCTCTGCCAC-ATATATCT-GT
87071547 CTGGTGGCTCTGCCACATATATCTGT
1 CTGGTGGCTCTGCCACATATATCTGT
*
87071573 CTTGGTGGCTATGCCACA-ATTATCTGAT
1 C-TGGTGGCTCTGCCACATA-TATCTG-T
*
87071601 CTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTCTGCCACATATATCT-GT
* *
87071628 CTAGTGGCTCTACCACA-ATATCTGT
1 CTGGTGGCTCTGCCACATATATCTGT
87071653 ATCTGGTGAC
Statistics
Matches: 92, Mismatches: 9, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
25 1 0.01
26 9 0.10
27 64 0.70
28 18 0.20
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATATATCTGT
Found at i:87071611 original size:54 final size:54
Alignment explanation
Indices: 87071515--87071660 Score: 197
Period size: 54 Copynumber: 2.7 Consensus size: 54
87071505 ATGGAGGAAG
* *
87071515 TGTCCTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATC
1 TGTCTTGGTGGCTATGCCACAA-TTATCTGATCTGGTGGCTCTGCCACATATATC
87071570 TGTCTTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
1 TGTCTTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
* * * *
87071624 TAT-TCTAGTGGCTCTACCACAA-TATCTGTATCTGGTG
1 TGTCT-TGGTGGCTATGCCACAATTATCTG-ATCTGGTG
87071661 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
53 7 0.08
54 55 0.66
55 21 0.25
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (54 bp):
TGTCTTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
Found at i:87079606 original size:54 final size:54
Alignment explanation
Indices: 87079502--87079646 Score: 220
Period size: 54 Copynumber: 2.7 Consensus size: 54
87079492 TGGAGGAAGC
* *
87079502 GTCCTGGTGGCTATGCCACAATTTATCTAATCTAGTGCCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAA-TTATCTGATCTGGTGCCTCTGCCACATATATCT
*
87079557 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTGCCACATATATCT
* *
87079611 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
87079647 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
53 6 0.07
54 57 0.68
55 21 0.25
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTGCCACATATATCT
Found at i:87079643 original size:27 final size:27
Alignment explanation
Indices: 87079505--87079664 Score: 159
Period size: 27 Copynumber: 5.9 Consensus size: 27
87079495 AGGAAGCGTC
* *
87079505 CTGGTGGCTATGCCACAATTTATCT-AAT
1 CTGGTGGCTCTGCCACAA--TATCTGTAT
* * *
87079533 CTAGTGCCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
87079560 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
87079587 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
87079614 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
87079641 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
87079665 GCAGCCTCGC
Statistics
Matches: 112, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
26 10 0.09
27 86 0.77
28 15 0.13
29 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:87079658 original size:81 final size:81
Alignment explanation
Indices: 87079505--87079664 Score: 191
Period size: 81 Copynumber: 2.0 Consensus size: 81
87079495 AGGAAGCGTC
* *
87079505 CTGGTGGCTATGCCACAATTTATCTAATCTAGTGCCTCTGCCACATATATCTGTCCTGGTGGCTA
1 CTGGTGGCTATGCCACAATATATCTAATCTAGTGCCTCTGCCACATATATCTGTCCTGGTGACTA
87079570 TGCCACAATTATCTGAT
66 TGCCACAA-TATCTGAT
* ** * * *
87079587 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAATATATCTAATCTAGTGCCTCTGCCACATATATCTGT-CCTGGTGACT
*
87079650 -TCGTCACAATATCTG
65 AT-GCCACAATATCTG
87079665 GCAGCCTCGC
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
80 15 0.22
81 37 0.55
82 15 0.22
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAATATATCTAATCTAGTGCCTCTGCCACATATATCTGTCCTGGTGACTA
TGCCACAATATCTGAT
Found at i:87084951 original size:39 final size:40
Alignment explanation
Indices: 87084906--87085077 Score: 195
Period size: 40 Copynumber: 4.3 Consensus size: 40
87084896 GCTCCTCGTT
* * *
87084906 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
87084946 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
87084985 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
87085025 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
* *
87085065 CAAAAGTCTTCGG
1 CAAATGCCTTCGG
87085078 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.29
40 78 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:87085068 original size:40 final size:40
Alignment explanation
Indices: 87084906--87085130 Score: 181
Period size: 40 Copynumber: 5.7 Consensus size: 40
87084896 GCTCCTCGTT
* * * * * *
87084906 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAAAGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* * ** *
87084946 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAAAGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* *
87084985 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAAAGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* *
87085025 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAAAGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCA
* ** * * *
87085065 CAAAAGTCTTC-GGATCTTAGTCCGGATATATTCA-CTTAGCA
1 CAAAAGCCTTCGGGA-CTTAACCCGGATTTAGT-ATC-TCGCA
*
87085106 C-AAAGCCTTCGGGACTTAGCCCGGA
1 CAAAAGCCTTCGGGACTTAACCCGGA
87085131 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 22, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
39 39 0.25
40 104 0.67
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAAAGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
Found at i:87092169 original size:39 final size:40
Alignment explanation
Indices: 87092124--87092295 Score: 204
Period size: 40 Copynumber: 4.3 Consensus size: 40
87092114 GCTCCTCGTT
* * *
87092124 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
87092164 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
87092203 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
87092243 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
*
87092283 CAAAAGCCTTCGG
1 CAAATGCCTTCGG
87092296 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.29
40 79 0.68
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:87092308 original size:80 final size:79
Alignment explanation
Indices: 87092124--87092348 Score: 204
Period size: 80 Copynumber: 2.8 Consensus size: 79
87092114 GCTCCTCGTT
* * * * * * *
87092124 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAAAGCCTTCGGGACTTAACCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
87092188 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* * *
87092203 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAAAGCCTTCGGGACTTAACCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
** *
87092268 AATTT-GTATCTCGCA
64 AATTTAACAACTCGCA
** * * * *
87092283 CAAAAGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAAAGCCTTCGGGA-CTTAACCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
87092347 GA
63 GA
87092349 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 67 0.56
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
CAAAAGCCTTCGGGACTTAACCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAACAACTCGCA
Found at i:87092357 original size:41 final size:41
Alignment explanation
Indices: 87092280--87092357 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
87092270 TTTGTATCTC
* * *
87092280 GCACAAAAGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAAGCCTTCGGATCTTAGCCCGGACACATTCACTTA
87092321 GCAC-AAAGCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAAGCCTTC-GGATCTTAGCCCGGACA-CATTCA
87092358 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 20 0.62
41 12 0.38
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
GCACAAAAGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:87096126 original size:37 final size:37
Alignment explanation
Indices: 87096067--87096172 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
87096057 AGCTCAGACG
* *
87096067 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
87096104 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
87096141 TAATCTCCACACATAGTCATCGGGTCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
87096173 AAAATATATT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:87096447 original size:48 final size:48
Alignment explanation
Indices: 87096321--87096505 Score: 273
Period size: 48 Copynumber: 3.8 Consensus size: 48
87096311 GCACATCGCC
* *
87096321 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC-T-CA
* * *
87096371 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
* *
87096419 TACATATTTCACATTATCCATTCGGCTTTACCACATATACATTTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
87096467 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
87096506 TGCATGTTCA
Statistics
Matches: 122, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
48 81 0.66
49 2 0.02
50 39 0.32
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:87096510 original size:98 final size:98
Alignment explanation
Indices: 87096321--87096504 Score: 284
Period size: 98 Copynumber: 1.9 Consensus size: 98
87096311 GCACATCGCC
* *
87096321 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTACATACATATTTCACATT
87096386 GACCATTCAGCTTTACCACATATGCATATCTCA
66 GACCATTCAGCTTTACCACATATGCATATCTCA
* * *
87096419 TACATATTTCACATTATCCATTCGGCTTTACCACATATACATTTC-T-CATACATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTACATACATATTTCACATT
*
87096482 -AGCCATTCGGCTTTACCACATAT
66 GA-CCATTCAGCTTTACCACATAT
87096505 ATGCATGTTC
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.44
97 1 0.01
98 42 0.53
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (98 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTACATACATATTTCACATT
GACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:87096554 original size:47 final size:47
Alignment explanation
Indices: 87096475--87096621 Score: 204
Period size: 47 Copynumber: 3.1 Consensus size: 47
87096465 CATACATATT
* * * *
87096475 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
87096522 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
87096569 TCACATTGGCCATTCGGCCTTATCTCATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
87096616 TCACAT
1 TCACAT
87096622 AAAATCCTAA
Statistics
Matches: 87, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 87 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:87101872 original size:21 final size:21
Alignment explanation
Indices: 87101848--87101894 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
87101838 ACATACATTT
*
87101848 CATATATTAAT-ATATACATAA
1 CATATATCAATCATATACAT-A
* *
87101869 CATAAATCAATCATTTACATA
1 CATATATCAATCATATACATA
87101890 CATAT
1 CATAT
87101895 CATCCCTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (21 bp):
CATATATCAATCATATACATA
Found at i:87107974 original size:45 final size:45
Alignment explanation
Indices: 87107917--87108002 Score: 163
Period size: 45 Copynumber: 1.9 Consensus size: 45
87107907 ACAAGAACAT
87107917 CTTAAATCATTTTTATTAATTTGTGTTTCCTTTAATCAACAAGGC
1 CTTAAATCATTTTTATTAATTTGTGTTTCCTTTAATCAACAAGGC
*
87107962 CTTAAATCATTTTTATTAATTTGTGTTTCCTTTAGTCAACA
1 CTTAAATCATTTTTATTAATTTGTGTTTCCTTTAATCAACA
87108003 TGGCATTCCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.28, C:0.15, G:0.08, T:0.49
Consensus pattern (45 bp):
CTTAAATCATTTTTATTAATTTGTGTTTCCTTTAATCAACAAGGC
Found at i:87109760 original size:46 final size:45
Alignment explanation
Indices: 87109707--87109879 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
87109697 TTGAGCATCT
*
87109707 GAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCCAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAA-GTCC
*** * *
87109753 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGC-A-TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCCAAGTCC
* *
87109800 -AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAA-GTCC
*
87109846 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87109880 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 65 0.62
47 31 0.30
48 1 0.01
49 2 0.02
50 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAAGTCC
Found at i:87116680 original size:46 final size:45
Alignment explanation
Indices: 87116624--87116799 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
87116614 TGGTTGAGCA
*
87116624 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCCAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAA-G
* *** * *
87116670 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAGGC-A-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCCAAG
* *
87116717 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAA-G
*
87116763 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87116800 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 2 0.02
46 67 0.62
47 31 0.29
48 1 0.01
49 2 0.02
50 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAAG
Found at i:87116780 original size:93 final size:93
Alignment explanation
Indices: 87116621--87116791 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
87116611 GGATGGTTGA
*
87116621 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCCAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCCAACGTCCGAACTCGTTGAGT
*
87116686 TGAGTTCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
87116714 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCCAACGTC-CGAACTCGTTGAG
87116778 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
87116792 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCCAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:87135366 original size:74 final size:74
Alignment explanation
Indices: 87135245--87135391 Score: 285
Period size: 74 Copynumber: 2.0 Consensus size: 74
87135235 AATCCAAAAA
87135245 ATACATCCTAAATCATTTATCTAAAAAGAAAACAAGAAAATTTAATCATTTGATAAAATGAACGA
1 ATACATCCTAAATCATTTATCTAAAAAGAAAACAAGAAAATTTAATCATTTGATAAAATGAACGA
87135310 GATTTGATG
66 GATTTGATG
*
87135319 ATACATCCTAAATCATTTATTTAAAAAGAAAACAAGAAAATTTAATCATTTGATAAAATGAACGA
1 ATACATCCTAAATCATTTATCTAAAAAGAAAACAAGAAAATTTAATCATTTGATAAAATGAACGA
87135384 GATTTGAT
66 GATTTGAT
87135392 CTCGTTCAAT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (74 bp):
ATACATCCTAAATCATTTATCTAAAAAGAAAACAAGAAAATTTAATCATTTGATAAAATGAACGA
GATTTGATG
Found at i:87144034 original size:31 final size:31
Alignment explanation
Indices: 87143996--87144074 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
87143986 TTTAACGATT
87143996 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
87144027 ACTGGGCCAAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
87144058 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
87144075 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:87144145 original size:42 final size:42
Alignment explanation
Indices: 87144098--87144189 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
87144088 TGGCCCATAG
* ** *
87144098 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
87144140 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
87144182 GCCCATTT
1 GCCCATTT
87144190 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:87144379 original size:26 final size:26
Alignment explanation
Indices: 87144334--87144431 Score: 171
Period size: 26 Copynumber: 3.8 Consensus size: 26
87144324 CCTCTTTAAT
87144334 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
87144359 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
87144385 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
87144411 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
87144432 GCACTTCCTC
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
25 10 0.15
26 58 0.85
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:87145294 original size:27 final size:27
Alignment explanation
Indices: 87145232--87145296 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
87145222 GGGCATATTC
87145232 GTCATTTTACCATACAGGGGTATTAAG
1 GTCATTTTACCATACAGGGGTATTAAG
* * *
87145259 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTAAG
*
87145286 GTCTTTTTACC
1 GTCATTTTACC
87145297 TAATAGGTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTAAG
Found at i:87145419 original size:29 final size:27
Alignment explanation
Indices: 87145354--87145448 Score: 86
Period size: 28 Copynumber: 3.4 Consensus size: 27
87145344 ATCTACAAAC
* *
87145354 CAAGGGTATTT-CAGTAATTTTGTTAAAC
1 CAAGGGTATTTCCA-TAACTTT-TTAAAT
*
87145382 CAATGGTATTTCCATAA-TTTTTAGAAAGT
1 CAAGGGTATTTCCATAACTTTTT--AAA-T
**
87145411 CAAGGGTATTTCTGTAACTTTTTAAAT
1 CAAGGGTATTTCCATAACTTTTTAAAT
87145438 CAAGGGTATTT
1 CAAGGGTATTT
87145449 TGGTAATTTT
Statistics
Matches: 57, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
26 2 0.04
27 15 0.26
28 19 0.33
29 16 0.28
30 5 0.09
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTCCATAACTTTTTAAAT
Found at i:87145454 original size:27 final size:27
Alignment explanation
Indices: 87145327--87145782 Score: 249
Period size: 27 Copynumber: 16.8 Consensus size: 27
87145317 TTTCATACTA
* * * * *
87145327 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * *
87145354 CAAGGGTATTTCAGTAATTTTGTTAAAC
1 CAAGGGTATTTTGGTAATTTT-ATAAAT
* *** *
87145382 CAATGGTATTTCCATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTATAAA-T
87145411 CAAGGGTATTTCT-GTAACTTTT-TAAAT
1 CAAGGGTATTT-TGGTAA-TTTTATAAAT
*
87145438 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * * * *
87145465 TGAGGGTATTTCGATAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
87145491 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTATAAAT
* * *
87145518 CTAGGGGTGTTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTTATAAAT
* * *
87145546 TAAGGGTATTTCGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * * *
87145573 CAAGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
87145599 CTAGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAT
* * *
87145626 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
87145653 CGAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *** * * *
87145680 CGAGGGTAAAATAGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
*** * *
87145707 CAAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* **** *
87145734 TAAGGGTAAAACGGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
87145761 CGAGGGTACTTTGGTAATTTTA
1 CAAGGGTATTTTGGTAATTTTA
87145783 CAATTTGAGG
Statistics
Matches: 347, Mismatches: 70, Indels: 24
0.79 0.16 0.05
Matches are distributed among these distances:
26 29 0.08
27 272 0.78
28 25 0.07
29 21 0.06
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:87145534 original size:81 final size:80
Alignment explanation
Indices: 87145440--87145673 Score: 317
Period size: 81 Copynumber: 2.9 Consensus size: 80
87145430 TTTTAAATCA
* * *
87145440 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAACC-AGTGGTATTTT
1 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTATAAACCAAG-GGTATTTT
*
87145504 GGTAATTTTACAAACT
65 AGTAATTTTACAAACT
* *
87145520 AGGGGTGTTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTTATAAACCAAGGGTATTTT
1 A-GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTATAAACCAAGGGTATTTT
* *
87145585 AGCAATTTTACAGACT
65 AGTAATTTTACAAACT
** * * * *
87145601 AGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCGAGGGTATTTTA
1 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTATAAACCAAGGGTATTTTA
87145666 GTAATTTT
66 GTAATTTT
87145674 GTAAATCGAG
Statistics
Matches: 135, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
80 64 0.47
81 69 0.51
82 2 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.41
Consensus pattern (80 bp):
AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTATAAACCAAGGGTATTTTA
GTAATTTTACAAACT
Found at i:87147098 original size:33 final size:33
Alignment explanation
Indices: 87147056--87147119 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
87147046 AAAGAGATAA
87147056 TACGTAACTATTTAGAATTATAACTGATGCTAG
1 TACGTAACTATTTAGAATTATAACTGATGCTAG
87147089 TACGTAACTATTTAGAATTATAACTGATGCT
1 TACGTAACTATTTAGAATTATAACTGATGCT
87147120 CTTCAGTACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (33 bp):
TACGTAACTATTTAGAATTATAACTGATGCTAG
Found at i:87150795 original size:19 final size:20
Alignment explanation
Indices: 87150757--87150800 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
87150747 TGTTATTAAA
87150757 TATATTTTTAATATAGATAT
1 TATATTTTTAATATAGATAT
* *
87150777 TATATTTTTATTAT-TATAT
1 TATATTTTTAATATAGATAT
87150796 TATAT
1 TATAT
87150801 ATATATATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TATATTTTTAATATAGATAT
Found at i:87152269 original size:18 final size:18
Alignment explanation
Indices: 87152154--87152263 Score: 107
Period size: 18 Copynumber: 6.1 Consensus size: 18
87152144 TAAATAAAGA
* **
87152154 TACTGAATAACTAACTAC
1 TACTGAATAACTGACTGT
*
87152172 TACTGAATAACTAACTGT
1 TACTGAATAACTGACTGT
* *
87152190 TACTGGATAACTGACTGC
1 TACTGAATAACTGACTGT
* *
87152208 TAATGAATAATTGACTGT
1 TACTGAATAACTGACTGT
*
87152226 TACTGAATAA-T-ATATCGT
1 TACTGAATAACTGA-CT-GT
87152244 TACTGAATAACTGACTGT
1 TACTGAATAACTGACTGT
87152262 TA
1 TA
87152264 AAGAATGACT
Statistics
Matches: 76, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
16 1 0.01
17 2 0.03
18 70 0.92
19 2 0.03
20 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (18 bp):
TACTGAATAACTGACTGT
Found at i:87152316 original size:18 final size:18
Alignment explanation
Indices: 87152242--87152325 Score: 62
Period size: 18 Copynumber: 4.7 Consensus size: 18
87152232 ATAATATATC
* * *
87152242 GTTACTGAATAACTGACT
1 GTTATTGAATGACTGAAT
**
87152260 GTTAAAGAATGACTGAAT
1 GTTATTGAATGACTGAAT
* * *
87152278 ATTATTGAAAGAGT-AATT
1 GTTATTGAATGACTGAA-T
*
87152296 GTTATTGAATGATTGAAT
1 GTTATTGAATGACTGAAT
*
87152314 GTTACTGAATGA
1 GTTATTGAATGA
87152326 AACTGATAAA
Statistics
Matches: 51, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
17 2 0.04
18 47 0.92
19 2 0.04
ACGTcount: A:0.38, C:0.06, G:0.20, T:0.36
Consensus pattern (18 bp):
GTTATTGAATGACTGAAT
Found at i:87161288 original size:26 final size:26
Alignment explanation
Indices: 87161252--87161308 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
87161242 CTTGGGTTCG
87161252 GTTGTGTATTGATGCAAGAAGGTCGA
1 GTTGTGTATTGATGCAAGAAGGTCGA
87161278 GTTGTGTATTGATGCAAGAAGGTCGA
1 GTTGTGTATTGATGCAAGAAGGTCGA
87161304 GTTGT
1 GTTGT
87161309 AGCTTATGCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.25, C:0.07, G:0.35, T:0.33
Consensus pattern (26 bp):
GTTGTGTATTGATGCAAGAAGGTCGA
Done.