Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 259 of 373
Found at i:87772389 original size:78 final size:80
Alignment explanation
Indices: 87772255--87772437 Score: 214
Period size: 78 Copynumber: 2.3 Consensus size: 80
87772245 TTGAATGATG
* *
87772255 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
87772319 GTGCGAGATACTA-A
66 GTGCGAGATACTATA
* * * **
87772333 TTCCGGGCTAAG-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 -TCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
*
87772395 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* *
87772412 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
87772438 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
77 1 0.01
78 56 0.63
79 19 0.21
80 13 0.15
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTATA
Found at i:87775900 original size:19 final size:19
Alignment explanation
Indices: 87775878--87775927 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
87775868 TACTTCAATA
*
87775878 CCCTGATTGCAC-CAGGTGC
1 CCCTGATTGCACTCA-GTAC
*
87775897 CCCTG-TTGTACTTCAGTAC
1 CCCTGATTGCAC-TCAGTAC
87775916 CCCTGATTGCAC
1 CCCTGATTGCAC
87775928 ATTGTGCCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 5 0.20
19 13 0.52
20 7 0.28
ACGTcount: A:0.16, C:0.36, G:0.20, T:0.28
Consensus pattern (19 bp):
CCCTGATTGCACTCAGTAC
Found at i:87775985 original size:38 final size:40
Alignment explanation
Indices: 87775814--87775985 Score: 164
Period size: 38 Copynumber: 4.5 Consensus size: 40
87775804 GAATGCATAT
* **
87775814 ACGTG-CCTTGTTTGTACTTCGGTACCCCTTGATTG-ACAC
1 ACGTGCCCCTGTTTGTACTTCAATACCCC-TGATTGCACAC
*
87775853 ACGTGCCCCTGGTTGTACTTCAATA-CCCTGATTGCAC-C
1 ACGTGCCCCTGTTTGTACTTCAATACCCCTGATTGCACAC
* *
87775891 AGGTGCCCCTG-TTGTACTTCAGTACCCCTGATTGCACA-
1 ACGTGCCCCTGTTTGTACTTCAATACCCCTGATTGCACAC
** * *
87775929 TTGTGCCCCT-TTTTTACTTC-ATA-CCCTGATTGCACAT
1 ACGTGCCCCTGTTTGTACTTCAATACCCCTGATTGCACAC
* *
87775966 ACTTGCCCCAGTTTGTACTT
1 ACGTGCCCCTGTTTGTACTT
87775986 TAGGACCCTA
Statistics
Matches: 111, Mismatches: 15, Indels: 15
0.79 0.11 0.11
Matches are distributed among these distances:
36 13 0.12
37 20 0.18
38 53 0.48
39 10 0.09
40 15 0.14
ACGTcount: A:0.17, C:0.31, G:0.17, T:0.35
Consensus pattern (40 bp):
ACGTGCCCCTGTTTGTACTTCAATACCCCTGATTGCACAC
Found at i:87794625 original size:27 final size:27
Alignment explanation
Indices: 87794594--87794771 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
87794584 TAAATTGTAC
87794594 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
87794621 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
87794647 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
87794675 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
87794703 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
87794730 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
87794757 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
87794772 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:87794708 original size:82 final size:81
Alignment explanation
Indices: 87794595--87794750 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
87794585 AAATTGTACA
*
87794595 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
87794659 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
87794676 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
87794741 TGCGAGTTGA
65 TGCGAATTGA
87794751 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:87794762 original size:82 final size:81
Alignment explanation
Indices: 87794591--87794771 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
87794581 GATTAAATTG
*
87794591 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
87794656 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
87794672 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
87794736 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
87794754 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
87794772 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:87809524 original size:18 final size:18
Alignment explanation
Indices: 87809501--87809593 Score: 159
Period size: 18 Copynumber: 5.2 Consensus size: 18
87809491 CCCAACTACT
*
87809501 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
87809519 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
87809537 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
87809555 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
87809573 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
87809591 GTA
1 GTA
87809594 AACGGTCGTA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 70 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:87809553 original size:36 final size:36
Alignment explanation
Indices: 87809501--87809593 Score: 177
Period size: 36 Copynumber: 2.6 Consensus size: 36
87809491 CCCAACTACT
*
87809501 GTATACGTGAACAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
87809537 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
87809573 GTATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
87809594 AACGGTCGTA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 56 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
Found at i:87810363 original size:22 final size:23
Alignment explanation
Indices: 87810314--87810373 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 23
87810304 ATAATTATTT
*
87810314 TTTATAA-ATATAA-ATTTAATG
1 TTTATAATATATAATATTTAATA
*
87810335 TTT-TAATA-ATAATATTTACTA
1 TTTATAATATATAATATTTAATA
*
87810356 TTTATAATATAAAATATT
1 TTTATAATATATAATATT
87810374 AAACAATGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
20 7 0.22
21 13 0.41
22 5 0.16
23 7 0.22
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (23 bp):
TTTATAATATATAATATTTAATA
Found at i:87814687 original size:34 final size:35
Alignment explanation
Indices: 87814614--87814688 Score: 89
Period size: 35 Copynumber: 2.2 Consensus size: 35
87814604 AAGCCCAGCT
* *
87814614 CTAGTTGGATAAACCAACGGTAATTGTGCCAAGCG
1 CTAGTCGGATAAACCAACGGTAATTGTGCCAAGCA
* * * *
87814649 CTAGTCGGATTAACCGACGGTTA-TGTGCCTAGCA
1 CTAGTCGGATAAACCAACGGTAATTGTGCCAAGCA
87814683 CTAGTC
1 CTAGTC
87814689 AGACAAGCTG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
34 15 0.44
35 19 0.56
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (35 bp):
CTAGTCGGATAAACCAACGGTAATTGTGCCAAGCA
Found at i:87834076 original size:47 final size:47
Alignment explanation
Indices: 87834002--87834101 Score: 182
Period size: 47 Copynumber: 2.1 Consensus size: 47
87833992 TTTTGCACGT
87834002 TATCTTATAATGATTCTTTGCACAGTTGACGTCCATATAGATGAGCA
1 TATCTTATAATGATTCTTTGCACAGTTGACGTCCATATAGATGAGCA
* *
87834049 TATCTTATAATGATTCTTTGCATAGTTGATGTCCATATAGATGAGCA
1 TATCTTATAATGATTCTTTGCACAGTTGACGTCCATATAGATGAGCA
87834096 TATCTT
1 TATCTT
87834102 CTTAAGGAGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (47 bp):
TATCTTATAATGATTCTTTGCACAGTTGACGTCCATATAGATGAGCA
Found at i:87838126 original size:25 final size:25
Alignment explanation
Indices: 87838098--87838157 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
87838088 CCATATGATA
*
87838098 GGAAGCTCATGTGAGCTATATAACG
1 GGAAGCTCATCTGAGCTATATAACG
* * *
87838123 GGAAGCTTATCTGGGCTATATAATG
1 GGAAGCTCATCTGAGCTATATAACG
87838148 GGAAGCTCAT
1 GGAAGCTCAT
87838158 AAGAGTCATA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (25 bp):
GGAAGCTCATCTGAGCTATATAACG
Found at i:87838333 original size:26 final size:26
Alignment explanation
Indices: 87838286--87838336 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
87838276 CGGAGAGCAA
*
87838286 TTAATCAGGAAGCTCACAAAGAGCCT
1 TTAATCAGGAAGATCACAAAGAGCCT
**
87838312 TTAATCAGGAAGATCATGAAGAGCC
1 TTAATCAGGAAGATCACAAAGAGCC
87838337 ATATAACGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
TTAATCAGGAAGATCACAAAGAGCCT
Found at i:87838820 original size:21 final size:21
Alignment explanation
Indices: 87838796--87838837 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
87838786 TAAATTTAGC
*
87838796 TCAATTTAATACAATTCACAT
1 TCAATTCAATACAATTCACAT
* *
87838817 TCAATTCAATTCAGTTCACAT
1 TCAATTCAATACAATTCACAT
87838838 CCTAGGCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.21, G:0.02, T:0.38
Consensus pattern (21 bp):
TCAATTCAATACAATTCACAT
Found at i:87847041 original size:19 final size:18
Alignment explanation
Indices: 87847009--87847054 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
87846999 TATGGCCTTA
* *
87847009 ATAAATAATTTTTAAAAAT
1 ATAAAAAATATTT-AAAAT
87847028 ATAAAAAATATTTAAAAT
1 ATAAAAAATATTTAAAAT
*
87847046 TTAAAAAAT
1 ATAAAAAAT
87847055 TATAAAAAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAAAAAATATTTAAAAT
Found at i:87847422 original size:137 final size:137
Alignment explanation
Indices: 87847258--87847529 Score: 431
Period size: 137 Copynumber: 2.0 Consensus size: 137
87847248 TAATCGCAAG
* *
87847258 TAAATGCATCTCCCATCCAAAGGGACCCTTAGTCAGTATTTTCATCAAAAGAACAACAATTTAAC
1 TAAATGCATCTCCCATCCAAAAGGACCCCTAGTCAGTATTTTCATCAAAAGAACAACAATTTAAC
* * *
87847323 TCTTTTTGAAAGATTAATGGTTAAATTAGACTTTTTTTTAAAGGTTGATA-G-TCAAATTTAGTT
66 TCTTTTTAAAAGATTAATGATTAAATTAGACTTTTTTTTAAAGGTT-A-ACGATCAAATTTAATT
87847386 AAAAAAAAA
129 AAAAAAAAA
* * * *
87847395 TAAATGCATCTGCCATCCAAAAGGACCCCTAGTTAGTATTTTCGTCAAAAGAACAATAATTTAAC
1 TAAATGCATCTCCCATCCAAAAGGACCCCTAGTCAGTATTTTCATCAAAAGAACAACAATTTAAC
87847460 TCTTTTTAAAAGATTAATGATTAAATTAGACTTTTTTTTAAAGGTTAACGATCAAATTTAATTAA
66 TCTTTTTAAAAGATTAATGATTAAATTAGACTTTTTTTTAAAGGTTAACGATCAAATTTAATTAA
87847525 AAAAA
131 AAAAA
87847530 TAACAATCAA
Statistics
Matches: 124, Mismatches: 9, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
135 1 0.01
136 2 0.02
137 121 0.98
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.35
Consensus pattern (137 bp):
TAAATGCATCTCCCATCCAAAAGGACCCCTAGTCAGTATTTTCATCAAAAGAACAACAATTTAAC
TCTTTTTAAAAGATTAATGATTAAATTAGACTTTTTTTTAAAGGTTAACGATCAAATTTAATTAA
AAAAAAA
Found at i:87851758 original size:18 final size:18
Alignment explanation
Indices: 87851714--87851761 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 18
87851704 TAGTACAACT
**
87851714 AGAGCAGGAGGAAGGGTA
1 AGAGCAGGAGGAAGGACA
** *
87851732 AGAATAGGAGGCAGGACA
1 AGAGCAGGAGGAAGGACA
87851750 AGAGCAGGAGGA
1 AGAGCAGGAGGA
87851762 GTGATGGCTC
Statistics
Matches: 22, Mismatches: 8, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.42, C:0.08, G:0.46, T:0.04
Consensus pattern (18 bp):
AGAGCAGGAGGAAGGACA
Found at i:87853762 original size:16 final size:16
Alignment explanation
Indices: 87853727--87853773 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
87853717 TCTTTAAGTG
* * *
87853727 AAGAAAGATTACGCCC
1 AAGAAAGAGTACACCT
*
87853743 AAGAAAGAGTGCACCT
1 AAGAAAGAGTACACCT
87853759 AAGAAAGAGTACACC
1 AAGAAAGAGTACACC
87853774 CCAAAGTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.47, C:0.21, G:0.21, T:0.11
Consensus pattern (16 bp):
AAGAAAGAGTACACCT
Found at i:87855161 original size:25 final size:25
Alignment explanation
Indices: 87855105--87855167 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
87855095 AAACCAAACC
* *
87855105 AAGCCCTTGTGGCGAGTTATCTATA
1 AAGCCTTTGTGGCGAATTATCTATA
* *
87855130 AAACCTTTATGGCGAATTATCTGA-A
1 AAGCCTTTGTGGCGAATTATCT-ATA
87855155 AAGCCTTTGTGGC
1 AAGCCTTTGTGGC
87855168 ATATTGTTTG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
25 30 0.97
26 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (25 bp):
AAGCCTTTGTGGCGAATTATCTATA
Found at i:87855727 original size:13 final size:13
Alignment explanation
Indices: 87855709--87855733 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87855699 TTAAAGGAAG
87855709 CAGATTCACAGAA
1 CAGATTCACAGAA
87855722 CAGATTCACAGA
1 CAGATTCACAGA
87855734 TTTAATACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.24, G:0.16, T:0.16
Consensus pattern (13 bp):
CAGATTCACAGAA
Found at i:87861089 original size:80 final size:79
Alignment explanation
Indices: 87861005--87861176 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
87860995 GGACTAAGAT
*
87861005 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
87861069 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
87861085 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
87861150 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
87861164 CCGAAGGCATTTG
1 CCGAAGGCATTTG
87861177 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:87861156 original size:39 final size:39
Alignment explanation
Indices: 87860952--87861174 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
87860942 TTGAATGCTG
* * * * *
87860952 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
87860992 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
87861031 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
87861072 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
87861112 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
87861151 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
87861175 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:87861194 original size:79 final size:80
Alignment explanation
Indices: 87861032--87861209 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
87861022 AGATACAAAT
* * * *
87861032 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
87861097 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
87861112 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
87861176 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
87861191 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
87861210 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:87869030 original size:80 final size:79
Alignment explanation
Indices: 87868946--87869117 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
87868936 GGACTAAGAT
*
87868946 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
87869010 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
87869026 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
87869091 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
87869105 CCGAAGGCATTTG
1 CCGAAGGCATTTG
87869118 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:87869097 original size:39 final size:39
Alignment explanation
Indices: 87868893--87869115 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
87868883 TTGAATGCTG
* * * * *
87868893 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
87868933 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
87868972 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
87869013 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
87869053 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
87869092 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
87869116 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:87869135 original size:79 final size:80
Alignment explanation
Indices: 87868973--87869150 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
87868963 AGATACAAAT
* * * *
87868973 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
87869038 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
87869053 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
87869117 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
87869132 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
87869151 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:87888568 original size:21 final size:21
Alignment explanation
Indices: 87888542--87888581 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
87888532 CCTCTGTCAT
87888542 GATACTATAGTGAAATGACAC
1 GATACTATAGTGAAATGACAC
87888563 GATACTATAGTGAAATGAC
1 GATACTATAGTGAAATGAC
87888582 TTTGTGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.25
Consensus pattern (21 bp):
GATACTATAGTGAAATGACAC
Found at i:87889013 original size:16 final size:18
Alignment explanation
Indices: 87888986--87889018 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
87888976 TAGAATCGAG
87888986 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
87889003 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
87889019 TGATGTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:87890670 original size:37 final size:37
Alignment explanation
Indices: 87890611--87890719 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
87890601 AGCTCAGACG
* *
87890611 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
87890648 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
87890685 TAATCTCCACACGTAGTCATCGTGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
87890720 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:87890989 original size:48 final size:48
Alignment explanation
Indices: 87890865--87891195 Score: 540
Period size: 48 Copynumber: 6.8 Consensus size: 48
87890855 GCACATCGCC
* *
87890865 TACATATTTCACACTAGCCCTTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
87890915 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
87890963 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
87891011 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
87891061 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
87891109 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
87891157 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
87891196 TGCATGTTTA
Statistics
Matches: 265, Mismatches: 10, Indels: 14
0.92 0.03 0.05
Matches are distributed among these distances:
48 176 0.66
49 4 0.02
50 85 0.32
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:87891035 original size:146 final size:146
Alignment explanation
Indices: 87890865--87891195 Score: 644
Period size: 146 Copynumber: 2.3 Consensus size: 146
87890855 GCACATCGCC
* *
87890865 TACATATTTCACACTAGCCCTTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
87890930 GACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
66 GACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
87890995 ACATATACATATCTCA
131 ACATATACATATCTCA
87891011 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
87891076 GACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
66 GACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
87891141 ACATATACATATCTCA
131 ACATATACATATCTCA
87891157 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
87891196 TGCATGTTTA
Statistics
Matches: 183, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
146 183 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (146 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
GACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
ACATATACATATCTCA
Found at i:87891200 original size:98 final size:96
Alignment explanation
Indices: 87890865--87891195 Score: 540
Period size: 98 Copynumber: 3.4 Consensus size: 96
87890855 GCACATCGCC
* * *
87890865 TACATATTTCACACTAGCCCTTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
*
87890930 -GACCATTCGGCTTTACCACATATGCATATCTCA
64 AG-CCATTCGGCTTTACCACATATACATATCTCA
87890963 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
87891028 CCATTCGGCTTTACCACATATACATATCTCATA
66 CCATTCGGCTTTACCACATATACATATCTC--A
* *
87891061 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
87891125 GCCATTCGGCTTTACCACATATACATATCTCA
65 GCCATTCGGCTTTACCACATATACATATCTCA
87891157 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
87891196 TGCATGTTTA
Statistics
Matches: 220, Mismatches: 8, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
96 80 0.36
97 3 0.01
98 137 0.62
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (96 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCA
Found at i:87891244 original size:47 final size:47
Alignment explanation
Indices: 87891165--87891358 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
87891155 CATACATATT
* * * * *
87891165 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTTATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
87891212 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
87891259 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
87891306 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
87891353 TCACAT
1 TCACAT
87891359 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:87891285 original size:22 final size:22
Alignment explanation
Indices: 87891258--87891329 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
87891248 GCTCACATTC
87891258 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
87891280 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
87891304 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
87891327 ATC
1 ATC
87891330 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:87891286 original size:94 final size:94
Alignment explanation
Indices: 87891118--87891358 Score: 281
Period size: 94 Copynumber: 2.6 Consensus size: 94
87891108 ATACATATTT
* * * *
87891118 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
* * *
87891180 GGCTTTACCACATATATGCATGTTTATATTCAC
62 GGCCTTACCACATATATGCATGTTCACATTCAC
* ** *
87891213 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
* *
87891278 TTATCACATATATGCATGTTCACATTCAT
66 TTACCACATATATGCATGTTCACATTCAC
* * *
87891307 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
87891359 AAAATCCTAA
Statistics
Matches: 126, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
93 1 0.01
94 92 0.73
95 19 0.15
96 4 0.03
97 10 0.08
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATGTTCACATTCAC
Found at i:87894237 original size:16 final size:16
Alignment explanation
Indices: 87894213--87894247 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
87894203 TATAAAGGGC
*
87894213 TAGATAATTTAAGTGT
1 TAGACAATTTAAGTGT
87894229 TAGACAATTTAAGTGT
1 TAGACAATTTAAGTGT
87894245 TAG
1 TAG
87894248 GTTTAAGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.37, C:0.03, G:0.20, T:0.40
Consensus pattern (16 bp):
TAGACAATTTAAGTGT
Found at i:87896607 original size:18 final size:18
Alignment explanation
Indices: 87896563--87896608 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
87896553 AATCATAAAT
87896563 AATTATTAAAAATTCTCAA
1 AATTA-TAAAAATTCTCAA
* **
87896582 AATCATAAAAATTCTTTA
1 AATTATAAAAATTCTCAA
87896600 AATTATAAA
1 AATTATAAA
87896609 GAAACTAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (18 bp):
AATTATAAAAATTCTCAA
Found at i:87896709 original size:18 final size:19
Alignment explanation
Indices: 87896674--87896710 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
87896664 ATAAAAATAT
*
87896674 TTTAAAATTGTAAAAAAAC
1 TTTAAAATGGTAAAAAAAC
87896693 TTTAAAATGGTAAAAAAA
1 TTTAAAATGGTAAAAAAA
87896711 TATAAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.30
Consensus pattern (19 bp):
TTTAAAATGGTAAAAAAAC
Found at i:87906034 original size:20 final size:21
Alignment explanation
Indices: 87905996--87906037 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
87905986 TCAATCTTTT
87905996 TTTAGAAAAAAATATTTATAA
1 TTTAGAAAAAAATATTTATAA
87906017 TTTA-AAAACAAATA-TTATAA
1 TTTAGAAAA-AAATATTTATAA
87906037 T
1 T
87906038 ATGATGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (21 bp):
TTTAGAAAAAAATATTTATAA
Found at i:87915038 original size:44 final size:44
Alignment explanation
Indices: 87914933--87915141 Score: 213
Period size: 44 Copynumber: 4.8 Consensus size: 44
87914923 CCATAGCGAA
* * * * * * *
87914933 TCTTATCTCCCTAAAGTTACAGTGGAGCAGATTAAAACTATAAA
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAG
* * * *
87914977 TCTAATCTTCC-TAAAGTTGTAGTGGAGCAGATTGAAGTTACAAG
1 TCTTATC-TCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAG
* *
87915021 TCTTATCTCCTTGAAGTTGCAGTGGACCAAATTGAAGCTACAAG
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAG
* * * *
87915065 TCTTATCTTCTTGAAGTTGCAGTGGAGTAGATTGAAGCCACAAA
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAG
* * * *
87915109 TTTTATCTCTTTGAAGTTGTAGTAGAGCAGATT
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGATT
87915142 AAACTATAAA
Statistics
Matches: 137, Mismatches: 26, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
43 3 0.02
44 131 0.96
45 3 0.02
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (44 bp):
TCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAG
Found at i:87924809 original size:45 final size:44
Alignment explanation
Indices: 87924680--87925022 Score: 206
Period size: 44 Copynumber: 7.5 Consensus size: 44
87924670 CGTATCACTA
* * *
87924680 ATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGTTACAAGTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTT
* *
87924724 ATCTCCGTGAAGTTGCAGTGGAGCCGATTGAAGCTACAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTT
* * * *
87924768 ATCTCCCTAAAGTTACAATGGATGCAGATTGAAGCAACAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGA-GCAGATTGAAGCTACAAATCTT
** * * * *
87924813 ATAC-CTTTGAAGTTGCAGTGG-GTCGGATTAAATCTACCATAGTAAGTTTT
1 AT-CTCCCTGAAGTTGCAGTGGAG-CAGATTGAAGCTA-C--A--AA-TCTT
* ** * * * *
87924863 ATTTCCCAAAAGTTACAGTGGAACAGATTAAAACTACAAGCTACAGATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGA-T-----T-GAAGCTACAAATCTT
* * * *
87924914 ATCTCCGTGAAATTACAGTGGAGCAGATTGAAGATACAAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTT
** * * ** *
87924958 ATCTCCCTGAAGTTGCAGCAGAGTAGATTGAAACTACACTTCCT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTT
*
87925002 ATAC-CCCTGAAGCTGCAGTGG
1 AT-CTCCCTGAAGTTGCAGTGG
87925023 GTTAGAATGA
Statistics
Matches: 224, Mismatches: 56, Indels: 38
0.70 0.18 0.12
Matches are distributed among these distances:
43 1 0.00
44 127 0.57
45 37 0.17
46 1 0.00
47 1 0.00
49 2 0.01
50 21 0.09
51 25 0.11
52 1 0.00
54 1 0.00
56 2 0.01
57 5 0.02
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (44 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTT
Found at i:87925468 original size:13 final size:13
Alignment explanation
Indices: 87925450--87925475 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
87925440 GAGACAAACA
87925450 TGCAAAGAACAGT
1 TGCAAAGAACAGT
87925463 TGCAAAGAACAGT
1 TGCAAAGAACAGT
87925476 AGAAAAACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.23, T:0.15
Consensus pattern (13 bp):
TGCAAAGAACAGT
Found at i:87926523 original size:19 final size:19
Alignment explanation
Indices: 87926499--87926535 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
87926489 TATTTTTCTA
87926499 TTTATTTGTTTAT-TACTTC
1 TTTATTT-TTTATATACTTC
87926518 TTTATTTTTTATATACTT
1 TTTATTTTTTATATACTT
87926536 AAAAATTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.19, C:0.08, G:0.03, T:0.70
Consensus pattern (19 bp):
TTTATTTTTTATATACTTC
Found at i:87930968 original size:10 final size:10
Alignment explanation
Indices: 87930953--87930992 Score: 55
Period size: 10 Copynumber: 3.9 Consensus size: 10
87930943 CATAATTCCA
87930953 AAATAAAAAT
1 AAATAAAAAT
87930963 AAAT-AAAAT
1 AAATAAAAAT
87930972 AAAATAAAAAAT
1 -AAAT-AAAAAT
87930984 AAATAAAAA
1 AAATAAAAA
87930993 GTCTATTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 5 0.19
10 13 0.48
11 4 0.15
12 5 0.19
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.17
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:87930991 original size:21 final size:20
Alignment explanation
Indices: 87930952--87930991 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
87930942 CCATAATTCC
87930952 AAAATAAAAATAAATAAAAT
1 AAAATAAAAATAAATAAAAT
87930972 AAAATAAAAAATAAATAAAA
1 AAAAT-AAAAATAAATAAAA
87930992 AGTCTATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.17
Consensus pattern (20 bp):
AAAATAAAAATAAATAAAAT
Found at i:87935345 original size:42 final size:41
Alignment explanation
Indices: 87935274--87935411 Score: 152
Period size: 44 Copynumber: 3.2 Consensus size: 41
87935264 TCTTACTTGT
* * *
87935274 AATCAAATATCGATGCCACTGTCCTAGACAAGGTCTTATACGA
1 AATCAAATA-CGATGCCA-TGTCCCAGACATGGTCTTACACGA
87935317 AATCAAATACGATGCCGATGTCCCAGACATGGTCTTACACGTA
1 AATCAAATACGATGCC-ATGTCCCAGACATGGTCTTACACG-A
* * *
87935360 AATCTCAAAT-TGATGCTAATGTCCCAGACGTGGTCTTACACGA
1 AA--TCAAATACGATGC-CATGTCCCAGACATGGTCTTACACGA
87935403 AATCAAATA
1 AATCAAATA
87935412 TCGAAATCCT
Statistics
Matches: 83, Mismatches: 6, Indels: 13
0.81 0.06 0.13
Matches are distributed among these distances:
41 6 0.07
42 27 0.33
43 16 0.19
44 28 0.34
45 6 0.07
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (41 bp):
AATCAAATACGATGCCATGTCCCAGACATGGTCTTACACGA
Found at i:87947702 original size:11 final size:10
Alignment explanation
Indices: 87947668--87947706 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
87947658 AGTCCATTTA
87947668 TTTTATTTCT
1 TTTTATTTCT
87947678 TTTTATTTCT
1 TTTTATTTCT
*
87947688 TTTTATTTTT
1 TTTTATTTCT
87947698 CTTTTATTT
1 -TTTTATTT
87947707 AATTTTCTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 19 0.70
11 8 0.30
ACGTcount: A:0.10, C:0.08, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTATTTCT
Found at i:87947707 original size:15 final size:15
Alignment explanation
Indices: 87947668--87947715 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
87947658 AGTCCATTTA
* *
87947668 TTTTATTTCTTTTTA
1 TTTTATTTATTTTTC
*
87947683 TTTCTTTTTATTTTTC
1 TTT-TATTTATTTTTC
*
87947699 TTTTATTTAATTTTC
1 TTTTATTTATTTTTC
87947714 TT
1 TT
87947716 AAGACTTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 15 0.56
16 12 0.44
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTATTTATTTTTC
Found at i:87948087 original size:24 final size:24
Alignment explanation
Indices: 87948060--87948107 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
87948050 TACTATTAGA
87948060 ATGAATTTGATTGATTTACGATTT
1 ATGAATTTGATTGATTTACGATTT
*
87948084 ATGAATTTGATTGATTTATGATTT
1 ATGAATTTGATTGATTTACGATTT
87948108 TTATTGATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.02, G:0.17, T:0.52
Consensus pattern (24 bp):
ATGAATTTGATTGATTTACGATTT
Found at i:87948101 original size:17 final size:17
Alignment explanation
Indices: 87948079--87948115 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
87948069 ATTGATTTAC
87948079 GATTTATGAATTTGATT
1 GATTTATGAATTTGATT
* *
87948096 GATTTATGATTTTTATT
1 GATTTATGAATTTGATT
87948113 GAT
1 GAT
87948116 ATGTTTTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.16, T:0.57
Consensus pattern (17 bp):
GATTTATGAATTTGATT
Found at i:87948875 original size:19 final size:19
Alignment explanation
Indices: 87948851--87948888 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
87948841 TTCTAATTCA
87948851 GCAATTAGCTTCATTTGTC
1 GCAATTAGCTTCATTTGTC
87948870 GCAATTAGCTTCATTTGTC
1 GCAATTAGCTTCATTTGTC
87948889 TAAGTTTGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.42
Consensus pattern (19 bp):
GCAATTAGCTTCATTTGTC
Found at i:87959383 original size:11 final size:11
Alignment explanation
Indices: 87959367--87959392 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
87959357 CATAGGAGAC
87959367 AAAGGGATAGA
1 AAAGGGATAGA
87959378 AAAGGGATAGA
1 AAAGGGATAGA
87959389 AAAG
1 AAAG
87959393 TCAATGTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.35, T:0.08
Consensus pattern (11 bp):
AAAGGGATAGA
Found at i:87966748 original size:22 final size:22
Alignment explanation
Indices: 87966723--87966783 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 22
87966713 CCTGAGTTGA
*
87966723 TGAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTATCGAGC
87966745 TGAA-A-T--G-T-TATCGAGC
1 TGAACAGTAAGCTCTATCGAGC
87966761 TGAACAGTAAGCTC-ATACGAGC
1 TGAACAGTAAGCTCTAT-CGAGC
87966783 T
1 T
87966784 AAAATGGTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 14
0.67 0.02 0.30
Matches are distributed among these distances:
16 11 0.35
17 2 0.06
18 2 0.06
20 2 0.06
21 4 0.13
22 10 0.32
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATCGAGC
Found at i:87966817 original size:24 final size:24
Alignment explanation
Indices: 87966766--87966856 Score: 73
Period size: 24 Copynumber: 3.8 Consensus size: 24
87966756 CGAGCTGAAC
87966766 AGTAAGCT-CATACGAGCTAAAAT
1 AGTAAGCTCCATACGAGCTAAAAT
* *
87966789 GGTAAGCTCCA-ATGAGCTGAAAAT
1 AGTAAGCTCCATACGAGCT-AAAAT
* * *
87966813 AGTAAGCT-CTTACAAGCTGATATATT
1 AGTAAGCTCCATACGAGCT-A-A-AAT
87966839 AGTAAGCT-CATACGAGCT
1 AGTAAGCTCCATACGAGCT
87966857 GTGGTGAGTA
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
23 14 0.26
24 21 0.39
25 1 0.02
26 18 0.33
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (24 bp):
AGTAAGCTCCATACGAGCTAAAAT
Found at i:87971049 original size:44 final size:44
Alignment explanation
Indices: 87970999--87971291 Score: 268
Period size: 44 Copynumber: 6.7 Consensus size: 44
87970989 CTATTATAGT
*
87970999 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGA-TGAAGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAG-AAGATTGAAGCTAC
** * * * *
87971043 AAATCTTATCTCTTTGAAGTTGTAGTGGAGCAGATTAAAGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAGCTAC
* ** * * * * *
87971087 CAATCTTATCTCTTTGACGTTGTAGTGGAGCAGATTAAAGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAGCTAC
* *
87971131 AAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGCAAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAGCTAC
* * * *
87971175 AAGTCTTATTTCCCTAAAGTTGCAGTGG-GAAAATATGAGGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGAT-TGAAGCTAC
* * * * *
87971219 AACTCCTATATCCCTAAAGTTGCAGTGG-GAAAATATGAGGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGAT-TGAAGCTAC
* * * *
87971263 AACTCCTATATCCCTAAAATTGCAGTGGA
1 AAATCTTATCTCCCTAAAGTTGCAGTGGA
87971292 TTGGATTGGA
Statistics
Matches: 220, Mismatches: 26, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
43 7 0.03
44 213 0.97
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29
Consensus pattern (44 bp):
AAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAGCTAC
Found at i:87972882 original size:4 final size:4
Alignment explanation
Indices: 87972873--87972911 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
87972863 TTTTATGAAT
* *
87972873 TTTA TTTA TTTA TTTA TCTA TTTA TTTA -TTA TTTC TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
87972912 CCTCTATTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
3 3 0.10
4 27 0.90
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:87974509 original size:8 final size:9
Alignment explanation
Indices: 87974476--87974565 Score: 62
Period size: 10 Copynumber: 10.0 Consensus size: 9
87974466 AATATATTTC
87974476 TATTAAAAT
1 TATTAAAAT
*
87974485 CA-TACAAAT
1 TATTA-AAAT
87974494 TATTAAAAT
1 TATTAAAAT
*
87974503 T-TTAAAAA
1 TATTAAAAT
* *
87974511 AATATAAAAC
1 TAT-TAAAAT
87974521 TA-TAAAAT
1 TATTAAAAT
87974529 TATTATAAAT
1 TATTA-AAAT
**
87974539 T-GCAAAAT
1 TATTAAAAT
87974547 TATTAAAATT
1 TATTAAAA-T
87974557 TATTAAAAT
1 TATTAAAAT
87974566 AATAGAGAAT
Statistics
Matches: 62, Mismatches: 11, Indels: 16
0.70 0.12 0.18
Matches are distributed among these distances:
8 20 0.32
9 20 0.32
10 22 0.35
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.38
Consensus pattern (9 bp):
TATTAAAAT
Found at i:87974632 original size:19 final size:18
Alignment explanation
Indices: 87974581--87974656 Score: 55
Period size: 19 Copynumber: 4.0 Consensus size: 18
87974571 AGAATTACAA
*
87974581 AAAAATAATATAAAATTAT
1 AAAAATAAT-TAAAAATAT
* *
87974600 GAACAAT-ATAAAAAATAT
1 -AAAAATAATTAAAAATAT
* *
87974618 AAAAAATATTTAAAAGCTAT
1 -AAAAATAATTAAAA-ATAT
87974638 AAAAATAATTACAAAATAT
1 AAAAATAATTA-AAAATAT
87974657 TACTCAAAGT
Statistics
Matches: 43, Mismatches: 10, Indels: 7
0.72 0.17 0.12
Matches are distributed among these distances:
18 12 0.28
19 20 0.47
20 11 0.26
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.28
Consensus pattern (18 bp):
AAAAATAATTAAAAATAT
Found at i:88015213 original size:20 final size:20
Alignment explanation
Indices: 88015188--88015234 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
88015178 GATTTGATAT
88015188 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
88015208 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
88015228 ACATGAT
1 ACATGAT
88015235 GTATTCATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:88015373 original size:24 final size:24
Alignment explanation
Indices: 88015282--88015389 Score: 137
Period size: 25 Copynumber: 4.4 Consensus size: 24
88015272 AGGAAGTGCA
* *
88015282 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
88015306 GAAAAGGGCTTTTGCCCCAGTTTATT
1 -AAAAGGGC-TTTGCCCCAGTTTATC
88015332 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGC-TTTGCCCCAGTTTATC
*
88015357 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
88015380 AAAAGAGGCT
1 AAAAG-GGCT
88015390 AGGCCTCCAG
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
23 9 0.12
24 14 0.18
25 40 0.53
26 13 0.17
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:88023235 original size:25 final size:25
Alignment explanation
Indices: 88023206--88023253 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
88023196 TTATATTATG
* * *
88023206 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
88023231 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
88023254 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:88023314 original size:20 final size:20
Alignment explanation
Indices: 88023289--88023335 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
88023279 GATTTGATAT
88023289 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
88023309 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
88023329 ACATGAT
1 ACATGAT
88023336 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:88023411 original size:25 final size:24
Alignment explanation
Indices: 88023383--88023476 Score: 104
Period size: 25 Copynumber: 3.9 Consensus size: 24
88023373 AGGAAGTGCA
* *
88023383 AAAAGGGC-TATGCCCTAGTTTACC
1 AAAAGGGCTTTTGCCCCAGTTTA-C
*
88023407 GAAAA-GGCTTTTGCCCCAGTTTATT
1 -AAAAGGGCTTTTGCCCCAGTTTA-C
88023432 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGCTTTTGCCCCAGTTTA-C
88023457 AAAAGGGC-TTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
88023477 ATTAAAAGAG
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
24 19 0.31
25 43 0.69
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTTTGCCCCAGTTTAC
Found at i:88023435 original size:24 final size:25
Alignment explanation
Indices: 88023408--88023489 Score: 125
Period size: 25 Copynumber: 3.4 Consensus size: 25
88023398 TAGTTTACCG
88023408 AAAA-GGCTTTTGCCCCAGTTTATT
1 AAAAGGGCTTTTGCCCCAGTTTATT
*
88023432 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGCTTTTGCCCCAGTTTATT
88023457 AAAAGGGC-TTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCCAGTTTATT
88023480 AAAAGAGGCT
1 AAAAG-GGCT
88023490 AGGCGTCCAG
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
23 9 0.17
24 17 0.32
25 27 0.51
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATT
Found at i:88023461 original size:49 final size:49
Alignment explanation
Indices: 88023383--88023489 Score: 139
Period size: 49 Copynumber: 2.2 Consensus size: 49
88023373 AGGAAGTGCA
*
88023383 AAAAGGGC-TATGCCCTAGTTTACCGAAAA-GGCTTTTGCCCCAGTTTATT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGC-TTTGCCCCAG-TTATT
* *
88023432 AAAAGGGCTTTTGCCCCAGTTTATC-AAAAGGGCTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTATT
88023480 AAAAGAGGCT
1 AAAAG-GGCT
88023490 AGGCGTCCAG
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 10 0.19
49 26 0.50
50 16 0.31
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTATT
Found at i:88023736 original size:31 final size:31
Alignment explanation
Indices: 88023698--88023761 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
88023688 CGTTTACAGT
* *
88023698 AAAGGCTTCGGCTCAGTCATATGAAATATGA
1 AAAGGCTTCGACCCAGTCATATGAAATATGA
**
88023729 AAAGGCTTCGACCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTCATATGAAATATGA
88023760 AA
1 AA
88023762 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTCATATGAAATATGA
Found at i:88040075 original size:40 final size:40
Alignment explanation
Indices: 88039977--88040279 Score: 405
Period size: 40 Copynumber: 7.6 Consensus size: 40
88039967 TCCTCGTTCA
* * * * *
88039977 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
88040016 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
88040056 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
88040096 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
88040136 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
88040176 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
88040216 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
88040256 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
88040280 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:88048674 original size:49 final size:49
Alignment explanation
Indices: 88048602--88048699 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
88048592 TTCGAAGGTG
*
88048602 GGGAGTTTCGATTCTTTCAATTGTCACCTAACAACAAAGATTTTGCAAA
1 GGGAGTTTCGATTCTCTCAATTGTCACCTAACAACAAAGATTTTGCAAA
88048651 GGGAGTTTCGATTCTCTCAATTGTCACCTAACAACAAAGATTTTGCAAA
1 GGGAGTTTCGATTCTCTCAATTGTCACCTAACAACAAAGATTTTGCAAA
88048700 ATCAAACTCA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (49 bp):
GGGAGTTTCGATTCTCTCAATTGTCACCTAACAACAAAGATTTTGCAAA
Found at i:88050030 original size:24 final size:24
Alignment explanation
Indices: 88050000--88050046 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
88049990 GAACATGCCT
88050000 TTGAGTCTGTCTTGAAATAGTTTC
1 TTGAGTCTGTCTTGAAATAGTTTC
88050024 TTGAGTCTGTCTTGAAATAGTTT
1 TTGAGTCTGTCTTGAAATAGTTT
88050047 TTACCTTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.11, G:0.21, T:0.47
Consensus pattern (24 bp):
TTGAGTCTGTCTTGAAATAGTTTC
Found at i:88052231 original size:22 final size:22
Alignment explanation
Indices: 88052194--88052238 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
88052184 TTGATGTTCT
88052194 AGTTGGAATGGTAATGTGTCTAA
1 AGTTGGAATGGTAATGTGT-TAA
*
88052217 AGTTGGTAT-GTAATGTGTTAA
1 AGTTGGAATGGTAATGTGTTAA
88052238 A
1 A
88052239 CTTAATGTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.19
22 9 0.43
23 8 0.38
ACGTcount: A:0.31, C:0.02, G:0.29, T:0.38
Consensus pattern (22 bp):
AGTTGGAATGGTAATGTGTTAA
Found at i:88052646 original size:300 final size:300
Alignment explanation
Indices: 88052104--88053007 Score: 1691
Period size: 300 Copynumber: 3.0 Consensus size: 300
88052094 AACTCATACT
88052104 ACTAAGCTTTTGTCTCGGTAGATTTTGACTCGTTATGTTGATTTTGTGGCATGTATATAAGGCAT
1 ACTAAGCTTTTGTCTCGGTAGATTTTGACTCGTTATGTTGATTTTGTGGCATGTATATAAGGCAT
* *
88052169 TTTGAGTTGACGAAGTTGATGTTCTAGTTGGAATGGTAATGTGTCTAAAGTTGGTATGTAATGTG
66 TTTGAGTTGACGAAGTTGATGTTCTAGTTGGAATTGTAATATGTCTAAAGTTGGTATGTAATGTG
88052234 TTAAACTTAATGTTCTCATGGTATGCTTATATGTTATTTTGGAAATGTCATGTGATCTAAATTAT
131 TTAAACTTAATGTTCTCATGGTATGCTTATATGTTATTTTGGAAATGTCATGTGATCTAAATTAT
*
88052299 GATATTGATGAAATTGGAATGTAATGTTTGGTTTATGCTTTAGTTAATGATGTGCATTGTTGAAT
196 GATATTGATGAAATTGGAATGTAATGTTTGGTTTATGCTTTAGTTAATGATGTGAATTGTTGAAT
*
88052364 TAGATTGGATATGATGGTGCCTTATGGCATACCGGTTAGA
261 TAGATTGGATATGATGGTGCCTTATGGCATATCGGTTAGA
* *
88052404 ACTAAGCTTTTGTCTCAGTAGATTTTGACTCGTTATGTTGATTTTGTGGCATGTATATAAGGAAT
1 ACTAAGCTTTTGTCTCGGTAGATTTTGACTCGTTATGTTGATTTTGTGGCATGTATATAAGGCAT
* *
88052469 TTTGAGTTGACGAAGCTGATGTTCTAGTTGAAATTGTAATATGTCTAAAGTTGGTATGTAATGTG
66 TTTGAGTTGACGAAGTTGATGTTCTAGTTGGAATTGTAATATGTCTAAAGTTGGTATGTAATGTG
*
88052534 TTAAACTTAATGTTCTCATGGTATGCTTATTTGTTATTTTGGAAATGTCATGTGATCTAAATTAT
131 TTAAACTTAATGTTCTCATGGTATGCTTATATGTTATTTTGGAAATGTCATGTGATCTAAATTAT
88052599 GATATTGATGAAATTGGAATGTAATGTTTGGTTTATGCTTTAGTTAATGATGTGAATTGTTGAAT
196 GATATTGATGAAATTGGAATGTAATGTTTGGTTTATGCTTTAGTTAATGATGTGAATTGTTGAAT
88052664 TAGATTGGATATGATGGTGCCTTATGGCATATCGGTTAGA
261 TAGATTGGATATGATGGTGCCTTATGGCATATCGGTTAGA
88052704 ACTAAGCTTTTGTCTCGGTAGATTTTGACTCGTTATGTTGATTTTGTGGCATGTATATAAGGCAT
1 ACTAAGCTTTTGTCTCGGTAGATTTTGACTCGTTATGTTGATTTTGTGGCATGTATATAAGGCAT
*
88052769 TTTGAGTTGACGAAGTTGATGTTCTAATTGGAATTGTAATATGTCTAAAGTTGGTATGTAATGTG
66 TTTGAGTTGACGAAGTTGATGTTCTAGTTGGAATTGTAATATGTCTAAAGTTGGTATGTAATGTG
*
88052834 TTAAACTTAATGTTTTCATGGTATGCTTATATGTTATTTTGGAAATGTCATGTGATCTAAATTAT
131 TTAAACTTAATGTTCTCATGGTATGCTTATATGTTATTTTGGAAATGTCATGTGATCTAAATTAT
*
88052899 GATATTGATGAAATTGGAATGTAATGTTTGGTTTATGATTTAGTTAATGATGTGAATTGTTGAAT
196 GATATTGATGAAATTGGAATGTAATGTTTGGTTTATGCTTTAGTTAATGATGTGAATTGTTGAAT
*
88052964 TAGATTGGATGTGATGGTGCCTTATGGCATATCGGTTAGA
261 TAGATTGGATATGATGGTGCCTTATGGCATATCGGTTAGA
88053004 ACTA
1 ACTA
88053008 GGGACTTGTG
Statistics
Matches: 586, Mismatches: 18, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
300 586 1.00
ACGTcount: A:0.27, C:0.07, G:0.24, T:0.42
Consensus pattern (300 bp):
ACTAAGCTTTTGTCTCGGTAGATTTTGACTCGTTATGTTGATTTTGTGGCATGTATATAAGGCAT
TTTGAGTTGACGAAGTTGATGTTCTAGTTGGAATTGTAATATGTCTAAAGTTGGTATGTAATGTG
TTAAACTTAATGTTCTCATGGTATGCTTATATGTTATTTTGGAAATGTCATGTGATCTAAATTAT
GATATTGATGAAATTGGAATGTAATGTTTGGTTTATGCTTTAGTTAATGATGTGAATTGTTGAAT
TAGATTGGATATGATGGTGCCTTATGGCATATCGGTTAGA
Found at i:88053679 original size:19 final size:20
Alignment explanation
Indices: 88053638--88053680 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
88053628 TACTTTAATG
* *
88053638 TAAATATTAAAAAATAGAGA
1 TAAATATTAAAAAATACACA
*
88053658 TAAATATT-AAAACTACACA
1 TAAATATTAAAAAATACACA
88053677 TAAA
1 TAAA
88053681 ATTTGTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.63, C:0.07, G:0.05, T:0.26
Consensus pattern (20 bp):
TAAATATTAAAAAATACACA
Found at i:88056365 original size:14 final size:15
Alignment explanation
Indices: 88056331--88056365 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
88056321 ATGGAGGTAG
88056331 GATTCTGTATATTCT
1 GATTCTGTATATTCT
88056346 GA-TCTGTATA-TCT
1 GATTCTGTATATTCT
88056359 GATTCTG
1 GATTCTG
88056366 ATGACTGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 5 0.26
14 12 0.63
15 2 0.11
ACGTcount: A:0.20, C:0.14, G:0.17, T:0.49
Consensus pattern (15 bp):
GATTCTGTATATTCT
Found at i:88062986 original size:17 final size:18
Alignment explanation
Indices: 88062961--88063000 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
88062951 AGACCAATTT
88062961 GGGCATGTAGG-CCACAC
1 GGGCATGTAGGCCCACAC
*
88062978 GGGCTTGTAGGCCCACAC
1 GGGCATGTAGGCCCACAC
*
88062996 AGGCA
1 GGGCA
88063001 AGCCACCCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.23, C:0.30, G:0.35, T:0.12
Consensus pattern (18 bp):
GGGCATGTAGGCCCACAC
Found at i:88064376 original size:16 final size:15
Alignment explanation
Indices: 88064349--88064391 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
88064339 AATTTAATTC
*
88064349 TTTTTCTTTTAACTT
1 TTTTTTTTTTAACTT
88064364 TTCTTTTTTTTAACTT
1 TT-TTTTTTTTAACTT
88064380 TTTTTTTCTTTA
1 TTTTTTT-TTTA
88064392 GATTTCTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 7 0.28
16 18 0.72
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTTTTTTAACTT
Found at i:88069613 original size:4 final size:4
Alignment explanation
Indices: 88069596--88069625 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
88069586 TATTGTTTTC
*
88069596 AATT AATA AATT AATT AATT AATT AATT AA
1 AATT AATT AATT AATT AATT AATT AATT AA
88069626 AACTAAAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (4 bp):
AATT
Found at i:88073755 original size:26 final size:26
Alignment explanation
Indices: 88073719--88073770 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
88073709 AATTATGGTG
88073719 TTAAATTCTTATGTGTCACCCATGTC
1 TTAAATTCTTATGTGTCACCCATGTC
88073745 TTAAATTCTTATGTGTCACCCATGTC
1 TTAAATTCTTATGTGTCACCCATGTC
88073771 AATTTAGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (26 bp):
TTAAATTCTTATGTGTCACCCATGTC
Found at i:88073934 original size:14 final size:14
Alignment explanation
Indices: 88073915--88073944 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
88073905 ATCTCTCTAC
88073915 TTATTTTATTCTTT
1 TTATTTTATTCTTT
88073929 TTATTTTATTCTTT
1 TTATTTTATTCTTT
88073943 TT
1 TT
88073945 TATCTCTTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (14 bp):
TTATTTTATTCTTT
Found at i:88087576 original size:3 final size:3
Alignment explanation
Indices: 88087568--88087608 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
88087558 TTTCATTCTG
88087568 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
88087609 TCTGCATTCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:88101413 original size:37 final size:36
Alignment explanation
Indices: 88101366--88101435 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 36
88101356 CACTTTAATA
*
88101366 TTAAATTAATA-AAATACTATTAACATAAGTATTAAAT
1 TTAAATTAATATAAA-ACTATTAAAATAA-TATTAAAT
* *
88101403 TTAATTTAATATTAAACTATTAAAATAATATTA
1 TTAAATTAATATAAAACTATTAAAATAATATTA
88101436 TTTTTGGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
36 5 0.17
37 22 0.76
38 2 0.07
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.41
Consensus pattern (36 bp):
TTAAATTAATATAAAACTATTAAAATAATATTAAAT
Found at i:88103958 original size:64 final size:64
Alignment explanation
Indices: 88103878--88104059 Score: 190
Period size: 67 Copynumber: 2.8 Consensus size: 64
88103868 AGACATTATG
* * *
88103878 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAACTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAACTACGAGATAA
* * * * * *
88103942 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAACTACGAGAT
88104007 AA
63 AA
* * *
88104009 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGA
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGA
88104060 GCCGAACTAT
Statistics
Matches: 96, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 17 0.18
64 25 0.26
66 21 0.22
67 32 0.33
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAACTACGAGATAA
Found at i:88122155 original size:96 final size:94
Alignment explanation
Indices: 88122044--88122490 Score: 797
Period size: 96 Copynumber: 4.7 Consensus size: 94
88122034 CAGCCAAGAC
88122044 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
88122109 GGCCTAATGGCCGATGTGATGAATGTGAA
66 GGCCTAATGGCCGATGTGATGAATGTGAA
88122138 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
88122203 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
88122236 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
88122301 GGCCTAATGGCCGATGTGATGAATGTG-A
66 GGCCTAATGGCCGATGTGATGAATGTGAA
88122329 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
88122394 AAGGCCTAATGGCCGATGTGATGAATGTGAA
64 AAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
88122425 AGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGCATAAACGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
88122490 G
66 G
88122491 TCCCGAAGGG
Statistics
Matches: 342, Mismatches: 4, Indels: 14
0.95 0.01 0.04
Matches are distributed among these distances:
93 52 0.15
94 57 0.17
95 41 0.12
96 145 0.42
98 47 0.14
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (94 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:88122167 original size:49 final size:47
Alignment explanation
Indices: 88122044--88122490 Score: 797
Period size: 47 Copynumber: 9.4 Consensus size: 47
88122034 CAGCCAAGAC
88122044 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
88122091 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
88122138 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
88122187 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
88122236 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
88122283 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-A
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
88122329 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
88122376 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
88122425 AGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
88122472 AGTGCATAAACGTGATAAG
1 AGTGTATATATGTGATAAG
88122491 TCCCGAAGGG
Statistics
Matches: 391, Mismatches: 4, Indels: 10
0.97 0.01 0.02
Matches are distributed among these distances:
46 46 0.12
47 202 0.52
49 143 0.37
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:88122664 original size:36 final size:36
Alignment explanation
Indices: 88122609--88122686 Score: 104
Period size: 36 Copynumber: 2.1 Consensus size: 36
88122599 CCGAGCTCTA
* *
88122609 AAGACCCGATGACTACGTGT-GAGAATTTTGTCCGGGT
1 AAGA-CCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
88122646 AAGACCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCGATAACTACGTGTGGAGATTATGTCCGGGT
88122682 AAGAC
1 AAGAC
88122687 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 30 0.81
37 7 0.19
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (36 bp):
AAGACCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:88131013 original size:47 final size:47
Alignment explanation
Indices: 88130955--88131296 Score: 540
Period size: 47 Copynumber: 7.3 Consensus size: 47
88130945 ACAAGATATG
88130955 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
88131002 TATATGAGATAAGACCTAATGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
88131049 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
88131096 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
88131143 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
88131190 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
88131237 TATATGTTATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
88131284 TAAATGTGATAAG
1 TATATGTGATAAG
88131297 TCCCGAAGGG
Statistics
Matches: 267, Mismatches: 28, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 267 1.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:88131057 original size:25 final size:25
Alignment explanation
Indices: 88131029--88131104 Score: 70
Period size: 25 Copynumber: 3.2 Consensus size: 25
88131019 AATGGCCAAC
88131029 GTGATGAATGTGAAAGTGTATATAT
1 GTGATGAATGTGAAAGTGTATATAT
* * ***
88131054 GTGAT-AAGGCCG-AA-TGGCCA-AT
1 GTGATGAATG-TGAAAGTGTATATAT
88131076 GTGATGAATGTGAAAGTGTATATAT
1 GTGATGAATGTGAAAGTGTATATAT
88131101 GTGA
1 GTGA
88131105 CAAGGCCTAA
Statistics
Matches: 36, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
22 8 0.22
23 8 0.22
24 8 0.22
25 12 0.33
ACGTcount: A:0.34, C:0.05, G:0.30, T:0.30
Consensus pattern (25 bp):
GTGATGAATGTGAAAGTGTATATAT
Found at i:88133308 original size:38 final size:38
Alignment explanation
Indices: 88133242--88133354 Score: 138
Period size: 38 Copynumber: 3.0 Consensus size: 38
88133232 AATCCGGGCT
* * * *
88133242 TAAAGACCCAATGACTATAAGTAGAGATTGTGTCCGGG
1 TAAAGACCCGATGACTATATGCAGAGATTATGTCCGGG
*
88133280 TAAAGACCCGATGACTATATGC-GAAGATTATGCCCGGG
1 TAAAGACCCGATGACTATATGCAG-AGATTATGTCCGGG
* * *
88133318 TAAAGATCCGATGGCTATGTGCAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGCAGAGATTATGTCCGG
88133355 ATTAAAATTC
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
37 1 0.02
38 62 0.97
39 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGCAGAGATTATGTCCGGG
Found at i:88133520 original size:40 final size:40
Alignment explanation
Indices: 88133412--88133521 Score: 204
Period size: 39 Copynumber: 2.8 Consensus size: 40
88133402 CTCGACGATG
*
88133412 ATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
88133452 ATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
88133491 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
88133522 CGATGATGTG
Statistics
Matches: 68, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
39 39 0.57
40 29 0.43
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
Found at i:88133732 original size:25 final size:25
Alignment explanation
Indices: 88133691--88133744 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
88133681 GTGTAATAAT
*
88133691 GAATGAATATAGGCACTATGTGTGC
1 GAATGAATATAGACACTATGTGTGC
*
88133716 GAATGAAT-TGAGACACTGTGTGTGC
1 GAATGAATAT-AGACACTATGTGTGC
88133741 GAAT
1 GAAT
88133745 TCTTTAACCG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (25 bp):
GAATGAATATAGACACTATGTGTGC
Found at i:88133788 original size:28 final size:28
Alignment explanation
Indices: 88133757--88133853 Score: 90
Period size: 28 Copynumber: 3.5 Consensus size: 28
88133747 TTTAACCGAG
*
88133757 CACTATGTGTACGAGATCGGTCAGTGGA
1 CACTATGTGTGCGAGATCGGTCAGTGGA
* ** * *
88133785 CACTGTGTGTGCGA-ATTCTTTAACT-GA
1 CACTATGTGTGCGAGA-TCGGTCAGTGGA
*
88133812 GCACTATGTGTGCGAGATCGGTCAGTGGG
1 -CACTATGTGTGCGAGATCGGTCAGTGGA
*
88133841 CACTGTGTGTGCG
1 CACTATGTGTGCG
88133854 GATTTCGTTT
Statistics
Matches: 52, Mismatches: 13, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
27 3 0.06
28 47 0.90
29 2 0.04
ACGTcount: A:0.20, C:0.19, G:0.33, T:0.29
Consensus pattern (28 bp):
CACTATGTGTGCGAGATCGGTCAGTGGA
Found at i:88133793 original size:56 final size:56
Alignment explanation
Indices: 88133727--88133853 Score: 227
Period size: 56 Copynumber: 2.3 Consensus size: 56
88133717 AATGAATTGA
88133727 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTACGAGATCGGTCAGTG
1 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTACGAGATCGGTCAGTG
* *
88133783 GACACTGTGTGTGCGAATTCTTTAACTGAGCACTATGTGTGCGAGATCGGTCAGTG
1 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTACGAGATCGGTCAGTG
*
88133839 GGCACTGTGTGTGCG
1 GACACTGTGTGTGCG
88133854 GATTTCGTTT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.29
Consensus pattern (56 bp):
GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTACGAGATCGGTCAGTG
Found at i:88134137 original size:34 final size:34
Alignment explanation
Indices: 88134093--88134160 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
88134083 TTATAAAGGA
*
88134093 TATTCGTTAGGATGTTTAAGAACATGTATACTTT
1 TATTCATTAGGATGTTTAAGAACATGTATACTTT
88134127 TATTCATTAGGATGTTTAAGAACATGTATACTTT
1 TATTCATTAGGATGTTTAAGAACATGTATACTTT
88134161 CGGCCATGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.31, C:0.09, G:0.16, T:0.44
Consensus pattern (34 bp):
TATTCATTAGGATGTTTAAGAACATGTATACTTT
Found at i:88137005 original size:47 final size:47
Alignment explanation
Indices: 88136947--88137288 Score: 531
Period size: 47 Copynumber: 7.3 Consensus size: 47
88136937 ACAAGATATG
88136947 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
88136994 TATATGAGATAAGACCTAATGACCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
88137041 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
88137088 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
88137135 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
88137182 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAATGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
88137229 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
88137276 TAAATGTGATAAG
1 TATATGTGATAAG
88137289 TCCCGAAGGG
Statistics
Matches: 265, Mismatches: 30, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 265 1.00
ACGTcount: A:0.35, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:88137049 original size:25 final size:25
Alignment explanation
Indices: 88137021--88137096 Score: 61
Period size: 25 Copynumber: 3.2 Consensus size: 25
88137011 AATGACCAAC
88137021 GTGATGAATGTGAAAGTGTATATAT
1 GTGATGAATGTGAAAGTGTATATAT
* * ***
88137046 GTGAT-AAGGCCG-AA-TGGCCA-AT
1 GTGATGAATG-TGAAAGTGTATATAT
*
88137068 GTGATGAATGTAAAAGTGTATATAT
1 GTGATGAATGTGAAAGTGTATATAT
88137093 GTGA
1 GTGA
88137097 CAAGGCCTAA
Statistics
Matches: 35, Mismatches: 11, Indels: 10
0.62 0.20 0.18
Matches are distributed among these distances:
22 7 0.20
23 8 0.23
24 8 0.23
25 12 0.34
ACGTcount: A:0.36, C:0.05, G:0.29, T:0.30
Consensus pattern (25 bp):
GTGATGAATGTGAAAGTGTATATAT
Found at i:88143524 original size:46 final size:46
Alignment explanation
Indices: 88143380--88143550 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 46
88143370 TTTGTGCGCT
* * * *
88143380 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-T-ATTACGAGAGCC
1 AGTGTAAGACATGTTTGGGACTTGCATCGG-CATTGA-GATGAGAGCC
* * * *
88143426 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTTTGGGAC-TTGCATCGGCATTGAGATGAGAGCC
* * *
88143474 AGTGTAAGAGATGTTTGAGACTTGCATCGGCATTGAGGTGTA-AGCC
1 AGTGTAAGACATGTTTGGGACTTGCATCGGCATTGAGATG-AGAGCC
* *
88143520 AGTGTAACACATGTTTGGGACATGCATCGGC
1 AGTGTAAGACATGTTTGGGACTTGCATCGGC
88143551 TACGAGATGT
Statistics
Matches: 103, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
46 55 0.53
47 24 0.23
48 23 0.22
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTTTGGGACTTGCATCGGCATTGAGATGAGAGCC
Found at i:88151261 original size:46 final size:47
Alignment explanation
Indices: 88151108--88151366 Score: 176
Period size: 46 Copynumber: 5.5 Consensus size: 47
88151098 TTTGTGCTCT
* * *
88151108 AGTGTAAGACATGTCTGGGACATGCATTGGCCAC-ATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGA-GACGTAGAGCC
* * ** * *
88151154 AGTGTAAGACCATGTATGGGACATGGCATCGGTATTGAGACG-AGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGAGACGTAGAGCC
*
88151202 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGGCGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGACGTAGAGCC
* * * * *
88151248 AGTGTAAGACATGTTTGGGACATGGATCGG-CTACGAGA--T-GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCT-CGAGACGTAGAGCC
* * * ** *
88151292 AATGTAAGACCATGTCTGGGACATGGCA-TCGCCATGGAGATTTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCC-TCGAGACGT-AGAGCC
*
88151342 AGTGTAAGACCATTTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
88151367 GCATCAACTT
Statistics
Matches: 166, Mismatches: 33, Indels: 25
0.74 0.15 0.11
Matches are distributed among these distances:
44 11 0.07
45 16 0.10
46 62 0.37
47 28 0.17
48 23 0.14
49 2 0.01
50 24 0.14
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGACGTAGAGCC
Found at i:88152425 original size:28 final size:28
Alignment explanation
Indices: 88152385--88152440 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
88152375 ACACGGGCTA
88152385 GGACACGGGC-GTGTCATGGCCGTGTGAG
1 GGACACGGGCGGTGTCA-GGCCGTGTGAG
88152413 GGACACGGGCGTGTGTCAGGCCGTGTGA
1 GGACACGGGCG-GTGTCAGGCCGTGTGA
88152441 AAACCCCTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 10 0.38
29 10 0.38
30 6 0.23
ACGTcount: A:0.14, C:0.21, G:0.46, T:0.18
Consensus pattern (28 bp):
GGACACGGGCGGTGTCAGGCCGTGTGAG
Found at i:88157489 original size:8 final size:8
Alignment explanation
Indices: 88157476--88157507 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
88157466 ATAGAAAATA
88157476 TATATGTT
1 TATATGTT
88157484 TATATGTT
1 TATATGTT
88157492 TATATGTT
1 TATATGTT
88157500 TATATGTT
1 TATATGTT
88157508 CATGTTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62
Consensus pattern (8 bp):
TATATGTT
Found at i:88159263 original size:42 final size:41
Alignment explanation
Indices: 88159146--88159303 Score: 174
Period size: 42 Copynumber: 3.7 Consensus size: 41
88159136 ACACCACTGT
* **
88159146 CATATCCCAAATATGGTCTTACATGTAATCTCGTATCGATGC
1 CATATCCCAGATATGGTCTTACATG-AATCTCAAATCGATGC
* * * * *
88159188 CAATAGCCCA-ACTATGGTCTTACACGAAATCTCACATCAATTC
1 C-ATATCCCAGA-TATGGTCTTACATG-AATCTCAAATCGATGC
*
88159231 CATATCCCAGATATGGTCTTACATGAAGTCTCAAATTGATGC
1 CATATCCCAGATATGGTCTTACATGAA-TCTCAAATCGATGC
88159273 CATATCCCAGATATGGTCTTACATGTAATCT
1 CATATCCCAGATATGGTCTTACATG-AATCT
88159304 TAGTAACCCT
Statistics
Matches: 98, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
41 2 0.02
42 60 0.61
43 36 0.37
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (41 bp):
CATATCCCAGATATGGTCTTACATGAATCTCAAATCGATGC
Found at i:88178492 original size:27 final size:27
Alignment explanation
Indices: 88178462--88178557 Score: 111
Period size: 27 Copynumber: 3.6 Consensus size: 27
88178452 GTAGCCTAGT
88178462 ATTACTAAAATACCCCTGTAGGGTAGA
1 ATTACTAAAATACCCCTGTAGGGTAGA
* * *
88178489 ATTACTAAAATGCCTCTGTAGGATAGA
1 ATTACTAAAATACCCCTGTAGGGTAGA
* * * *
88178516 ATTAGTGAAATGCCACTGTAGGGTAGA
1 ATTACTAAAATACCCCTGTAGGGTAGA
* *
88178543 ATTACTGAATTACCC
1 ATTACTAAAATACCC
88178558 TTGGTTTACA
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (27 bp):
ATTACTAAAATACCCCTGTAGGGTAGA
Found at i:88178572 original size:27 final size:27
Alignment explanation
Indices: 88178542--88178735 Score: 182
Period size: 27 Copynumber: 7.2 Consensus size: 27
88178532 TGTAGGGTAG
* *
88178542 AATTACTGAATTACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGATTTACAA
*
88178569 AATTATTG-AATACCCTT-AGTTTACAA
1 AATTACTGAAATACCCTTGA-TTTACAA
* * **
88178595 AATTACTG-AATACCCCTAATTTGGAA
1 AATTACTGAAATACCCTTGATTTACAA
*
88178621 AATTACTGAAATACCTTTGATTTGA-AA
1 AATTACTGAAATACCCTTGATTT-ACAA
* *
88178648 AATTACAGAAATACCCTTAATTTACAA
1 AATTACTGAAATACCCTTGATTTACAA
*
88178675 AATTA-TAGAAATACCCTTGAATTTAAAA
1 AATTACT-GAAATACCCTTG-ATTTACAA
* * * *
88178703 AATTACAGAAATACCATTGGTTTGCAA
1 AATTACTGAAATACCCTTGATTTACAA
88178730 AATTAC
1 AATTAC
88178736 CAAAACACCT
Statistics
Matches: 137, Mismatches: 22, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
26 44 0.32
27 70 0.51
28 23 0.17
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.34
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGATTTACAA
Found at i:88178677 original size:54 final size:54
Alignment explanation
Indices: 88178542--88178753 Score: 182
Period size: 55 Copynumber: 3.9 Consensus size: 54
88178532 TGTAGGGTAG
* * ** *
88178542 AATTACTGAATTACCCTTGGTTTACAAAATTATTG-AATACCCTT-AGTTT-ACAA
1 AATTACAGAAATACCCTTAATTTACAAAATTACTGAAATACCCTTGA-TTTGA-AA
* * ** *
88178595 AATTACTG-AATACCCCTAATTTGGAAAATTACTGAAATACCTTTGATTTGAAA
1 AATTACAGAAATACCCTTAATTTACAAAATTACTGAAATACCCTTGATTTGAAA
*
88178648 AATTACAGAAATACCCTTAATTTACAAAATTA-TAGAAATACCCTTGAATTTAAAA
1 AATTACAGAAATACCCTTAATTTACAAAATTACT-GAAATACCCTTG-ATTTGAAA
* ** * ** * *
88178703 AATTACAGAAATACCATTGGTTTGCAAAATTACCAAAACACCTTTGATTTG
1 AATTACAGAAATACCCTTAATTTACAAAATTACTGAAATACCCTTGATTTG
88178754 TAGATTTACC
Statistics
Matches: 129, Mismatches: 23, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
52 19 0.15
53 29 0.22
54 37 0.29
55 44 0.34
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.33
Consensus pattern (54 bp):
AATTACAGAAATACCCTTAATTTACAAAATTACTGAAATACCCTTGATTTGAAA
Found at i:88179474 original size:41 final size:41
Alignment explanation
Indices: 88179424--88179503 Score: 142
Period size: 41 Copynumber: 2.0 Consensus size: 41
88179414 GGAGGAAGAA
*
88179424 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
*
88179465 ATTGTGGATCGCATGGTTGCTTGACGACCGTGGATCCAC
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCAC
88179504 TGGTGGCTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.28
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:88179479 original size:411 final size:411
Alignment explanation
Indices: 88178717--88179488 Score: 1517
Period size: 411 Copynumber: 1.9 Consensus size: 411
88178707 ACAGAAATAC
88178717 CATTGGTTTGCAAAATTACCAAAACACCTTTGATTTGTAGATTTACCAATACACCCTTGTAGGGT
1 CATTGGTTTGCAAAATTACCAAAACACCTTTGATTTGTAGATTTACCAATACACCCTTGTAGGGT
88178782 GAAATGACTAAAATACCCCTAATAGGTAAAAAGACTGTTCTACCCCTCTAGGGTATATGACTCAC
66 GAAATGACTAAAATACCCCTAATAGGTAAAAAGACTGTTCTACCCCTCTAGGGTATATGACTCAC
88178847 TGATAATACAATTTAATTTATTTGATTATGTTTCGACTGAGAATGTATGATTGTGATTGGACCGT
131 TGATAATACAATTTAATTTATTTGATTATGTTTCGACTGAGAATGTATGATTGTGATTGGACCGT
* *
88178912 TGTGACTGTGATTTGTATGATTTTGTATGCCGTGTGTATATTTGCTGCATTCATATAATATTATG
196 TGTGACTGTGATTTGTATGATTTTGTATGACGTGTGTATATTTGCTGCACTCATATAATATTATG
88178977 TTGCACATGGGTGGGGATTATGAAACAGAGGAAGAAATTGAGGATCGCATGGTTGCTTGACGATC
261 TTGCACATGGGTGGGGATTATGAAACAGAGGAAGAAATTGAGGATCGCATGGTTGCTTGACGATC
88179042 GTGGATCCACCGATTGTGGATCGCATGGTTGCTTGATGGGTGGGGATTATGAAACGGAGGAAGAA
326 GTGGATCCACCGATTGTGGATCGCATGGTTGCTTGATGGGTGGGGATTATGAAACGGAGGAAGAA
88179107 ATTGAGGATCGCATGGTTGCT
391 ATTGAGGATCGCATGGTTGCT
88179128 CATTGGTTTGCAAAATTACCAAAACACCTTTGATTTGTAGATTTACCAATACACCCTTGTAGGGT
1 CATTGGTTTGCAAAATTACCAAAACACCTTTGATTTGTAGATTTACCAATACACCCTTGTAGGGT
88179193 GAAATGACTAAAATACCCCTAATAGGTAAAAAGACTGTTCTACCCCTCTAGGGTATATGACTCAC
66 GAAATGACTAAAATACCCCTAATAGGTAAAAAGACTGTTCTACCCCTCTAGGGTATATGACTCAC
88179258 TGATAATACAATTTAATTTATTTGATTATGTTTCGACTGAGAATGTATGATTGTGATTGGACCGT
131 TGATAATACAATTTAATTTATTTGATTATGTTTCGACTGAGAATGTATGATTGTGATTGGACCGT
88179323 TGTGACTGTGATTTGTATGATTTTGTATGACGTGTGTATATTTGCTGCACTCATATAATATTATG
196 TGTGACTGTGATTTGTATGATTTTGTATGACGTGTGTATATTTGCTGCACTCATATAATATTATG
*
88179388 TTGCACATGGGTGGGGATTATGAAACGGAGGAAGAAATTGAGGATCGCATGGTTGCTTGACGATC
261 TTGCACATGGGTGGGGATTATGAAACAGAGGAAGAAATTGAGGATCGCATGGTTGCTTGACGATC
88179453 GTGGATCCACCGATTGTGGATCGCATGGTTGCTTGA
326 GTGGATCCACCGATTGTGGATCGCATGGTTGCTTGA
88179489 CGACCGTGGA
Statistics
Matches: 358, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
411 358 1.00
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34
Consensus pattern (411 bp):
CATTGGTTTGCAAAATTACCAAAACACCTTTGATTTGTAGATTTACCAATACACCCTTGTAGGGT
GAAATGACTAAAATACCCCTAATAGGTAAAAAGACTGTTCTACCCCTCTAGGGTATATGACTCAC
TGATAATACAATTTAATTTATTTGATTATGTTTCGACTGAGAATGTATGATTGTGATTGGACCGT
TGTGACTGTGATTTGTATGATTTTGTATGACGTGTGTATATTTGCTGCACTCATATAATATTATG
TTGCACATGGGTGGGGATTATGAAACAGAGGAAGAAATTGAGGATCGCATGGTTGCTTGACGATC
GTGGATCCACCGATTGTGGATCGCATGGTTGCTTGATGGGTGGGGATTATGAAACGGAGGAAGAA
ATTGAGGATCGCATGGTTGCT
Found at i:88179683 original size:22 final size:22
Alignment explanation
Indices: 88179650--88179702 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
88179640 AATTATTCTG
*
88179650 ATTATGGTTTTGCACCAACCTA
1 ATTATGGCTTTGCACCAACCTA
**
88179672 CA-TATGGCTTTGTGCCAACCTA
1 -ATTATGGCTTTGCACCAACCTA
88179694 ATTATGGCT
1 ATTATGGCT
88179703 GTATGCCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 1 0.04
22 24 0.92
23 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.36
Consensus pattern (22 bp):
ATTATGGCTTTGCACCAACCTA
Found at i:88179709 original size:22 final size:22
Alignment explanation
Indices: 88179664--88179711 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
88179654 TGGTTTTGCA
* *
88179664 CCAACCTACATATGGCTTTGTG
1 CCAACCTACATATGGCTGTATG
88179686 CCAACCTA-ATTATGGCTGTATG
1 CCAACCTACA-TATGGCTGTATG
88179708 CCAA
1 CCAA
88179712 ACGTATTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 1 0.04
22 22 0.96
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (22 bp):
CCAACCTACATATGGCTGTATG
Found at i:88182575 original size:140 final size:140
Alignment explanation
Indices: 88182318--88182577 Score: 457
Period size: 140 Copynumber: 1.9 Consensus size: 140
88182308 TGGGAATTGG
* *
88182318 TGCCAATTATATTATCGTCGCTGATGGCTATTAAGCCCAATATTTGATTAGCAGCTTGCTGCAAT
1 TGCCAATTATATTACCGTCGCTGATGGCTATTAAGCCCAATATTTGATTAGCAGCTGGCTGCAAT
88182383 GAAAGTAGTACCGCAACCGGGCTACCATTGATGTGTATCGGATGGGTAGGTCGATCATATTTACC
66 GAAAGTAGTACCGCAACCGGGCTACCATTGATGTGTATCGGATGGGTAGGTCGATCATATTTACC
88182448 GAAGGCTGTA
131 GAAGGCTGTA
*
88182458 TGCCAATTATATTACCGTTGCTGATGGCTATTAAGCCCAATATTTGATTAGCAGCTGGCTGCAAT
1 TGCCAATTATATTACCGTCGCTGATGGCTATTAAGCCCAATATTTGATTAGCAGCTGGCTGCAAT
* * * *
88182523 GAAGGTAGTACCGCAACTGGGCTACCATTGATGTGTATTGGATGGGTGGGTCGAT
66 GAAAGTAGTACCGCAACCGGGCTACCATTGATGTGTATCGGATGGGTAGGTCGAT
88182578 ATTTATATCC
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
140 113 1.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (140 bp):
TGCCAATTATATTACCGTCGCTGATGGCTATTAAGCCCAATATTTGATTAGCAGCTGGCTGCAAT
GAAAGTAGTACCGCAACCGGGCTACCATTGATGTGTATCGGATGGGTAGGTCGATCATATTTACC
GAAGGCTGTA
Found at i:88185772 original size:42 final size:41
Alignment explanation
Indices: 88185660--88185773 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 41
88185650 TACCATACCA
* * *
88185660 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCA-ATATGGTCTTACACGAGATCTAATATCG
* *
88185702 ATGCCAATAGCCCAACTATGGTCTTACACGA-AGTCTAATGTCG
1 ATGCC-ATATCCCAA-TATGGTCTTACACGAGA-TCTAATATCG
88185745 ATGCCATATCCCATATATGGTCTTACACG
1 ATGCCATATCCCA-ATATGGTCTTACACG
88185774 TAATCTCAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
42 28 0.45
43 34 0.55
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (41 bp):
ATGCCATATCCCAATATGGTCTTACACGAGATCTAATATCG
Found at i:88202721 original size:19 final size:20
Alignment explanation
Indices: 88202697--88202734 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
88202687 GGTATCACCA
88202697 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
88202716 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
88202735 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:88203071 original size:93 final size:93
Alignment explanation
Indices: 88202963--88203131 Score: 311
Period size: 93 Copynumber: 1.8 Consensus size: 93
88202953 GCCCATAAGT
* *
88202963 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
88203028 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
88203056 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
88203121 CGAGTTCGGAT
66 CGAGTTCGGAT
88203132 ACTCAACCAT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:88203130 original size:46 final size:46
Alignment explanation
Indices: 88202955--88203130 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
88202945 TGTAACCCGC
* *
88202955 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
88203001 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * * *
88203051 --TTCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
88203094 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
88203131 TACTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 63 0.58
47 28 0.26
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:88211103 original size:93 final size:93
Alignment explanation
Indices: 88210995--88211165 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
88210985 GCCCATAAGT
* * *
88210995 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
88211060 CGAGTTCGGATGCCTAGTGACATTTCAC
66 CGAGTTCGGATGCCTAGTGACATTTCAC
* *
88211088 GAACTCAGACTCAACTTAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
88211153 CGAGTTCGGATGC
66 CGAGTTCGGATGC
88211166 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTGACATTTCAC
Found at i:88211162 original size:46 final size:46
Alignment explanation
Indices: 88210987--88211162 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
88210977 TGTAACCCGC
* * *
88210987 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
88211033 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT-GACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTCG-CAT
* * * * *
88211083 --TTCA-CGAACTCAGACTCAACTTAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
88211126 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
88211163 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 62 0.58
47 27 0.25
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:88211622 original size:30 final size:30
Alignment explanation
Indices: 88211588--88211644 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
88211578 ATTTAATACG
88211588 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
88211618 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGAAAAATTACACTTTTGCCC
88211645 TAGGCTCGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:88215048 original size:20 final size:20
Alignment explanation
Indices: 88215009--88215049 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
88214999 GCATGTGTTT
88215009 TGAATTTTCTTGATAGAATA
1 TGAATTTTCTTGATAGAATA
*
88215029 TGAATGTTTTTTGATA-AATA
1 TGAAT-TTTCTTGATAGAATA
88215049 T
1 T
88215050 ACAAGTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.34, C:0.02, G:0.15, T:0.49
Consensus pattern (20 bp):
TGAATTTTCTTGATAGAATA
Found at i:88215276 original size:8 final size:8
Alignment explanation
Indices: 88215263--88215287 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
88215253 AACAATAGGG
88215263 GTAAATAT
1 GTAAATAT
88215271 GTAAATAT
1 GTAAATAT
88215279 GTAAATAT
1 GTAAATAT
88215287 G
1 G
88215288 CTTAAATGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (8 bp):
GTAAATAT
Found at i:88220292 original size:20 final size:21
Alignment explanation
Indices: 88220253--88220292 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
88220243 AAGGGCTATT
*
88220253 TTGTAAAGTTTGTAAAATAAG
1 TTGTAAAGTGTGTAAAATAAG
*
88220274 TTGTAAA-TGTGTGAAATAA
1 TTGTAAAGTGTGTAAAATAA
88220293 TTGAAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (21 bp):
TTGTAAAGTGTGTAAAATAAG
Found at i:88221158 original size:49 final size:48
Alignment explanation
Indices: 88220953--88221269 Score: 226
Period size: 49 Copynumber: 6.7 Consensus size: 48
88220943 TGAAATGTGT
* * ** *
88220953 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCACAT-TATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATAGATGAGA
* ** * * *
88220999 GCCAGTGTAAGAAATATCTAGGACAT-GCATCGACCTCA-AGAT-ATGCAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATAGATGA-G--A
* * * *
88221047 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCTTG--ACATGTG-
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATAGATGAGA
* * *
88221092 TC-AGTGTAAGACTTGTCTCGGACATGGCATCGACACTGATAGATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTGATAGATGAGA
* * * *
88221140 GCTAGTGTAAGACCTGTCTGGGACATGACATTGGCCTCGATAGATGAAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCT-GATAGATGAGA
* *
88221189 G-TCAGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGAT--ATGTGA
1 GCT-AGTGTAAGACCTGTCTGGGACATGGCATCGACCT-GATAGATGAGA
* * * *
88221236 GCCAGTGTAAAACCATGTTTGGAACATGGCATCG
1 GCTAGTGTAAGACC-TGTCTGGGACATGGCATCG
88221270 GCATCGTACC
Statistics
Matches: 214, Mismatches: 42, Indels: 28
0.75 0.15 0.10
Matches are distributed among these distances:
44 29 0.14
45 4 0.02
46 35 0.16
47 20 0.09
48 47 0.22
49 79 0.37
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATAGATGAGA
Found at i:88221218 original size:98 final size:95
Alignment explanation
Indices: 88220953--88221271 Score: 273
Period size: 93 Copynumber: 3.4 Consensus size: 95
88220943 TGAAATGTGT
* * * * * *
88220953 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AT-TATGAGAGCCAGTGTAAGAAATAT
1 GCTAGTGTAAGACCTGTCTGGGACATGCATCGGCCTCGATACATGA-AGTCAGTGTAAGACATGT
88221016 CTAGGACAT-GCATCGACCTCAAGATATGCAA
65 CTAGGACATGGCATCGACCTCAAGATATG-AA
* * *
88221047 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGG-CTTG--ACATG-TGTCAGTGTAAGACTTGT
1 GCTAGTGTAAGACCTGTCTGGGACAT-GCATCGGCCTCGATACATGAAGTCAGTGTAAGACATGT
* *
88221108 CTCGGACATGGCATCGACACTGATAG--ATGAGA
65 CTAGGACATGGCATCGAC-CTCA-AGATATGA-A
* * *
88221140 GCTAGTGTAAGACCTGTCTGGGACATGACATTGGCCTCGATAGATGAAAGTCAGTGTAAGACCTG
1 GCTAGTGTAAGACCTGTCTGGGACATG-CATCGGCCTCGATACATG-AAGTCAGTGTAAGACATG
* * *
88221205 TCTGGGACATGGCATCGA-CT-TAGATATGTGA
64 TCTAGGACATGGCATCGACCTCAAGATATG-AA
* * * *
88221236 GCCAGTGTAAAACCATGTTTGGAACATGGCATCGGC
1 GCTAGTGTAAGACC-TGTCTGGGACAT-GCATCGGC
88221272 ATCGTACCCT
Statistics
Matches: 183, Mismatches: 24, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
92 23 0.13
93 43 0.23
94 37 0.20
95 9 0.05
96 22 0.12
97 16 0.09
98 33 0.18
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (95 bp):
GCTAGTGTAAGACCTGTCTGGGACATGCATCGGCCTCGATACATGAAGTCAGTGTAAGACATGTC
TAGGACATGGCATCGACCTCAAGATATGAA
Found at i:88223800 original size:91 final size:90
Alignment explanation
Indices: 88223637--88223804 Score: 268
Period size: 91 Copynumber: 1.9 Consensus size: 90
88223627 CCCCCATAAG
* *
88223637 CGAATCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAGTGAACTCGGACTCAACTCAAC
1 CGAATCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
88223702 GAGTCGGATGCCTAGTTACATCTCA
66 GAGTCGGATGCCTAGTTACATCTCA
*
88223727 CGAACTCGGACTCAACTCAACGAGTTCGGACATTC-CATCCATAAGTGAACTC-GACTCAACTCA
1 CGAA-TCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCA
88223790 ACGAGTTCGGATGCC
64 ACGAG-TCGGATGCC
88223805 CAAATATCCT
Statistics
Matches: 72, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
90 27 0.38
91 45 0.62
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (90 bp):
CGAATCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
GAGTCGGATGCCTAGTTACATCTCA
Done.