Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 260 of 373
Found at i:88226211 original size:30 final size:30
Alignment explanation
Indices: 88226167--88226255 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
88226157 CAAAGATAAC
*
88226167 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
88226196 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
88226226 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
88226256 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:88226215 original size:15 final size:14
Alignment explanation
Indices: 88226167--88226249 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
88226157 CAAAGATAAC
*
88226167 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
88226181 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
88226196 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
88226211 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
88226226 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
88226241 AAGAAACCC
1 AAGAAACCC
88226250 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:88226255 original size:15 final size:15
Alignment explanation
Indices: 88226178--88226255 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
88226168 AGAAAACCGA
88226178 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
88226193 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
88226207 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
88226222 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
88226238 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
88226253 ATA
1 ATA
88226256 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:88229288 original size:93 final size:93
Alignment explanation
Indices: 88229172--88229344 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
88229162 CGCCCATAAG
* *
88229172 CGAAATCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAAATCGAACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCA
88229237 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* * * * *
88229265 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCTATAAGTGAACTCGGACTCAACTCA
1 CGAAATCGAACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
88229330 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
88229345 CAAATATCCC
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAAATCGAACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:88229340 original size:46 final size:45
Alignment explanation
Indices: 88229166--88229340 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
88229156 GTAACCCGCC
* * * *
88229166 CATAAGCGAAATCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * * *
88229211 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 -CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCG---CAT
* *
88229261 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* *
88229304 CTATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 C-ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
88229341 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 64 0.60
47 30 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (45 bp):
CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:88229359 original size:46 final size:45
Alignment explanation
Indices: 88229216--88229359 Score: 139
Period size: 46 Copynumber: 3.1 Consensus size: 45
88229206 CGCATCCATA
* * * *
88229216 AGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATC-C
* * * *
88229264 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCTAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-C-CATATATCC
*
88229309 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATAT-CC
88229355 AGTGA
1 AGTGA
88229360 CANNNNNNNN
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
44 5 0.06
45 2 0.03
46 36 0.46
47 32 0.41
48 2 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCC
Found at i:88239713 original size:23 final size:22
Alignment explanation
Indices: 88239677--88239729 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
88239667 AGCTCATACA
88239677 ATTTTTTTTCAAAAAATTAAAC
1 ATTTTTTTTCAAAAAATTAAAC
88239699 ATTTTTTTTCAAAAAATTAAAC
1 ATTTTTTTTCAAAAAATTAAAC
88239721 ATTTTTTTT
1 ATTTTTTTT
88239730 AAAGATGTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.53
Consensus pattern (22 bp):
ATTTTTTTTCAAAAAATTAAAC
Found at i:88241511 original size:41 final size:41
Alignment explanation
Indices: 88241411--88241550 Score: 149
Period size: 41 Copynumber: 3.3 Consensus size: 41
88241401 AGCTCGTACA
*
88241411 ATGCCAATGTCCTAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCC-AGACAG-GGTCTTACATGAAATCAAA-ATCG
* *
88241454 ATGCCACTATCCCAGACAGGGTCTTACATGAAATC-AAATCG
1 ATGCCAATGT-CCAGACAGGGTCTTACATGAAATCAAAATCG
* *
88241495 ATGCCAATGTCTCAGACATGGTCTTACACGTAAATCATAAATCG
1 ATGCCAATGTC-CAGACAGGGTCTTACATG-AAATCA-AAATCG
*
88241539 ATGCCAACGTCC
1 ATGCCAATGTCC
88241551 CAAACATGAT
Statistics
Matches: 83, Mismatches: 8, Indels: 12
0.81 0.08 0.12
Matches are distributed among these distances:
40 1 0.01
41 28 0.34
42 7 0.08
43 28 0.34
44 19 0.23
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (41 bp):
ATGCCAATGTCCAGACAGGGTCTTACATGAAATCAAAATCG
Found at i:88241558 original size:44 final size:43
Alignment explanation
Indices: 88241411--88241567 Score: 160
Period size: 44 Copynumber: 3.7 Consensus size: 43
88241401 AGCTCGTACA
* * * *
88241411 ATGCCAATGTCCTAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAA-ATCG
* * *
88241454 ATGCC-ACTATCCCAGACAGGGTCTTACATG-AAATC-AAATCG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAAATCAAAATCG
* *
88241495 ATGCCAATGTCTCAGACATGGTCTTACACGTAAATCATAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCA-AAATCG
* *
88241539 ATGCCAACGTCCCAAACATGATCTTACAC
1 ATGCCAACGTCCCAGACATGGTCTTACAC
88241568 AATAACACAT
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
41 27 0.29
42 9 0.10
43 27 0.29
44 31 0.33
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAAATCG
Found at i:88241564 original size:85 final size:84
Alignment explanation
Indices: 88241411--88241566 Score: 201
Period size: 85 Copynumber: 1.8 Consensus size: 84
88241401 AGCTCGTACA
* * * *
88241411 ATGCCAATGTCCTAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGACAGGGT
1 ATGCCAATGTCCTAGACATGGTCTTACACGTAATCAAATATCGATGCCACTATCCCAAACAGGAT
88241476 CTTACATGAAATCAAATCG
66 CTTACATGAAATCAAATCG
*
88241495 ATGCCAATGT-CTCAGACATGGTCTTACACGTAAATCATAA-ATCGATGCCAAC-GTCCCAAACA
1 ATGCCAATGTCCT-AGACATGGTCTTACACGT-AATCA-AATATCGATGCC-ACTATCCCAAACA
*
88241557 TGATCTTACA
62 GGATCTTACA
88241567 CAATAACACA
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
83 2 0.03
84 26 0.42
85 30 0.48
86 4 0.06
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (84 bp):
ATGCCAATGTCCTAGACATGGTCTTACACGTAATCAAATATCGATGCCACTATCCCAAACAGGAT
CTTACATGAAATCAAATCG
Found at i:88246586 original size:43 final size:42
Alignment explanation
Indices: 88246539--88246636 Score: 108
Period size: 42 Copynumber: 2.3 Consensus size: 42
88246529 CCAGGACGTA
* * *
88246539 GTCTTACATGTAATCAAATATTGATGCCATTGTCTCAGATAG-G
1 GTCTTACATGTAATCAAATA-CGATGCCAATGTCCCAGA-AGTG
*** *
88246582 GTCTTACAAAAAATCAAATACGATGCCAATGTCCCAGACGTG
1 GTCTTACATGTAATCAAATACGATGCCAATGTCCCAGAAGTG
88246624 GTCTTACATGTAA
1 GTCTTACATGTAA
88246637 ATCATAAGTG
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
41 1 0.02
42 26 0.59
43 17 0.39
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (42 bp):
GTCTTACATGTAATCAAATACGATGCCAATGTCCCAGAAGTG
Found at i:88246639 original size:43 final size:44
Alignment explanation
Indices: 88246533--88246640 Score: 116
Period size: 43 Copynumber: 2.5 Consensus size: 44
88246523 CAACATCCAG
* * * *
88246533 GACGTAGTCTTACATGT-AATCAAATATTGATGCCATTGTCTCA
1 GACGTGGTCTTACATGTAAATCAAATATCGATGCCAATGTCCCA
* **
88246576 GATAG-GGTCTTACA-AAAAATCAAATA-CGATGCCAATGTCCCA
1 GA-CGTGGTCTTACATGTAAATCAAATATCGATGCCAATGTCCCA
88246618 GACGTGGTCTTACATGTAAATCA
1 GACGTGGTCTTACATGTAAATCA
88246641 TAAGTGTAAC
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
41 1 0.02
42 24 0.47
43 25 0.49
44 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (44 bp):
GACGTGGTCTTACATGTAAATCAAATATCGATGCCAATGTCCCA
Found at i:88247955 original size:42 final size:41
Alignment explanation
Indices: 88247840--88247978 Score: 118
Period size: 42 Copynumber: 3.2 Consensus size: 41
88247830 TGAGATATAG
* * *
88247840 TGTAAGACCGTGTATGGGACACAGGCCTCGATTTGAGATTTACA
1 TGTAAGACCATGTATGGGACACAGGCATCGATCT--GATTT-CA
* * *
88247884 TGTAAGACCATGTTTGGGACATCA-ACATCGTATCTGATTTCG
1 TGTAAGACCATGTATGGGACA-CAGGCATCG-ATCTGATTTCA
* * * *
88247926 TGTAAGACCCTGTCTGGGACAGAGGCATCGATACTGAATTACA
1 TGTAAGACCATGTATGGGACACAGGCATCGAT-CTG-ATTTCA
88247969 TGTAAGACCA
1 TGTAAGACCA
88247979 CGTCCGGGAC
Statistics
Matches: 77, Mismatches: 13, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
41 3 0.04
42 28 0.36
43 18 0.23
44 23 0.30
45 5 0.06
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (41 bp):
TGTAAGACCATGTATGGGACACAGGCATCGATCTGATTTCA
Found at i:88248280 original size:56 final size:56
Alignment explanation
Indices: 88248213--88248325 Score: 208
Period size: 56 Copynumber: 2.0 Consensus size: 56
88248203 CAAATGAGCA
*
88248213 TGGTTAGGCTCATGAATTACTCTGTGAAATGGCTATGAGTTCTGGCTATTGACTTT
1 TGGTTAGGCTCATGAATTACTCTGTGAAATGGCTATGAGTTCTGACTATTGACTTT
*
88248269 TGGTTAGGCTCATGAATTACTCTGTGAAATGGCTATGAGTTCTTACTATTGACTTT
1 TGGTTAGGCTCATGAATTACTCTGTGAAATGGCTATGAGTTCTGACTATTGACTTT
88248325 T
1 T
88248326 ATTTTATATG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.22, C:0.14, G:0.23, T:0.41
Consensus pattern (56 bp):
TGGTTAGGCTCATGAATTACTCTGTGAAATGGCTATGAGTTCTGACTATTGACTTT
Found at i:88256613 original size:10 final size:10
Alignment explanation
Indices: 88256598--88256626 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
88256588 GTGTGGTGAT
88256598 GATCCTCGAA
1 GATCCTCGAA
88256608 GATCCTCGAA
1 GATCCTCGAA
88256618 GATCCTCGA
1 GATCCTCGA
88256627 GCTCTCGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.21
Consensus pattern (10 bp):
GATCCTCGAA
Found at i:88256723 original size:10 final size:10
Alignment explanation
Indices: 88256708--88256746 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
88256698 GTGTGGTGAT
88256708 GATCCTCGAA
1 GATCCTCGAA
*
88256718 GATCCTCGAC
1 GATCCTCGAA
*
88256728 GATCCTCGAT
1 GATCCTCGAA
88256738 GATCCTCGA
1 GATCCTCGA
88256747 GCTCTCGGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.23
Consensus pattern (10 bp):
GATCCTCGAA
Found at i:88256733 original size:20 final size:20
Alignment explanation
Indices: 88256708--88256746 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
88256698 GTGTGGTGAT
88256708 GATCCTCGAAGATCCTCGAC
1 GATCCTCGAAGATCCTCGAC
*
88256728 GATCCTCGATGATCCTCGA
1 GATCCTCGAAGATCCTCGA
88256747 GCTCTCGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.23
Consensus pattern (20 bp):
GATCCTCGAAGATCCTCGAC
Found at i:88257284 original size:86 final size:86
Alignment explanation
Indices: 88257137--88257294 Score: 205
Period size: 86 Copynumber: 1.8 Consensus size: 86
88257127 GTACAATGCC
* ***
88257137 AACGTCCCAAACGTGCTCTTACATTTAATCAAATATCGATGCCATTGTCCCAGACAGGGTCTTAC
1 AACGTCCCAAACGTGCTCTTACATTAAATCAAATATCGATGCCAACATCCCAGACAGGGTCTTAC
88257202 AC-AAAATCGAATATGATACA
66 ACGAAAATCGAATATGATACA
* * *
88257222 AACGTCCCAGACGTGGTCTTACATGTAAATCATAA-GTCGATGCCAACATCCCAGAC-GTGGTCT
1 AACGTCCCAAACGTGCTCTTACAT-TAAATCA-AATATCGATGCCAACATCCCAGACAG-GGTCT
88257285 TACACGAAAA
63 TACACGAAAA
88257295 AACATATCGG
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
85 23 0.37
86 33 0.53
87 6 0.10
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.24
Consensus pattern (86 bp):
AACGTCCCAAACGTGCTCTTACATTAAATCAAATATCGATGCCAACATCCCAGACAGGGTCTTAC
ACGAAAATCGAATATGATACA
Found at i:88261794 original size:49 final size:49
Alignment explanation
Indices: 88261681--88261856 Score: 158
Period size: 49 Copynumber: 3.6 Consensus size: 49
88261671 TACGATGCCG
* * * * * * * *
88261681 ATGCCATGTTCCAAACATGGTCTTACACTG--GCTCACATATCTAAGTCG
1 ATGCCATGTCCCAGACA-GGTCTTACACTGAATCTCATATATCGAGGGCA
* *
88261729 ATGCCACGTCCCAGACAGGTCTTACACTGAATTTCATATATCGAGGGCA
1 ATGCCATGTCCCAGACAGGTCTTACACTGAATCTCATATATCGAGGGCA
* * ** * * * *
88261778 ATGCCATGTCCTAGACAGGTCGTACACTGGCTCTCATCTATCGATGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGAATCTCATATATCGAGGGCA
*
88261827 ATGCCATGTCCGAGACAGGTCTTACACTGA
1 ATGCCATGTCCCAGACAGGTCTTACACTGA
88261857 CACATGTCAA
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
47 12 0.12
48 14 0.14
49 77 0.75
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGAATCTCATATATCGAGGGCA
Found at i:88261843 original size:98 final size:97
Alignment explanation
Indices: 88261681--88261856 Score: 248
Period size: 98 Copynumber: 1.8 Consensus size: 97
88261671 TACGATGCCG
* *
88261681 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCTAAGTCGATGCCACGTCCCAGACA
1 ATGCCATGTTCCAAACATGGTCGTACACTGGCTCACATATCGAAGTCGATGCCACGTCCCAGACA
88261746 GGTCTTACACTGAATTTCATATATCGAGGGCA
66 GGTCTTACACTGAATTTCATATATCGAGGGCA
* * * * *
88261778 ATGCCATG-TCCTAGACA-GGTCGTACACTGGCTCTCATCTATCGATGTCGATGCCATGTCCGAG
1 ATGCCATGTTCC-AAACATGGTCGTACACTGGCTCACA--TATCGAAGTCGATGCCACGTCCCAG
88261841 ACAGGTCTTACACTGA
63 ACAGGTCTTACACTGA
88261857 CACATGTCAA
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
96 20 0.29
97 12 0.17
98 37 0.54
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (97 bp):
ATGCCATGTTCCAAACATGGTCGTACACTGGCTCACATATCGAAGTCGATGCCACGTCCCAGACA
GGTCTTACACTGAATTTCATATATCGAGGGCA
Found at i:88261983 original size:46 final size:47
Alignment explanation
Indices: 88261866--88261992 Score: 134
Period size: 48 Copynumber: 2.7 Consensus size: 47
88261856 ACACATGTCA
* * * *
88261866 AGCCGAAGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATCTTG
1 AGCCGATG-CATGTCCAAGACATGTCTTACACTAGCTTGCATATCGTG
* *
88261914 AGGCCAATACATGTCCAAGACATGTCTTACACTAGCTCT-CATAAT-GT-
1 A-GCCGATGCATGTCCAAGACATGTCTTACACTAGCT-TGCAT-ATCGTG
*
88261961 AGCCGATGCATGTCCTAGACATGTCTTACACT
1 AGCCGATGCATGTCCAAGACATGTCTTACACT
88261993 CGTACACATA
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
46 28 0.42
47 1 0.01
48 31 0.46
49 7 0.10
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (47 bp):
AGCCGATGCATGTCCAAGACATGTCTTACACTAGCTTGCATATCGTG
Found at i:88265272 original size:14 final size:14
Alignment explanation
Indices: 88265255--88265293 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
88265245 TTAAAAAAAG
88265255 AATTAAGAACACAT
1 AATTAAGAACACAT
* *
88265269 AATTAGGAACACGT
1 AATTAAGAACACAT
88265283 AATTAAGAACA
1 AATTAAGAACA
88265294 ACTCAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.54, C:0.13, G:0.13, T:0.21
Consensus pattern (14 bp):
AATTAAGAACACAT
Found at i:88269650 original size:13 final size:13
Alignment explanation
Indices: 88269628--88269664 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
88269618 CGTGTGAGTG
*
88269628 CACACGGCCGTGT
1 CACACAGCCGTGT
88269641 CACACAGCCGTGT
1 CACACAGCCGTGT
*
88269654 CACATAGCCGT
1 CACACAGCCGT
88269665 CTCTTACTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.22, C:0.38, G:0.24, T:0.16
Consensus pattern (13 bp):
CACACAGCCGTGT
Found at i:88288886 original size:6 final size:6
Alignment explanation
Indices: 88288865--88289036 Score: 113
Period size: 6 Copynumber: 27.8 Consensus size: 6
88288855 TATTAGAACT
* * * * *
88288865 AGAATC AAAATG AGAATC AGAATC AG-GTGAC AGAATC AAAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * *
88288914 AGAATC AGGATT AGGTAA-C AGAATC AGAATC AGTATC AGGTAA-C AGAATC
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* *
88288964 AGAATC AGAA-C AAGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTATC
1 AGAATC AGAATC -AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
88289013 AGGTAA-C AGAATC AGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
88289037 GTGAATGCAA
Statistics
Matches: 131, Mismatches: 18, Indels: 34
0.72 0.10 0.19
Matches are distributed among these distances:
5 10 0.08
6 101 0.77
7 14 0.11
8 6 0.05
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:88288903 original size:31 final size:31
Alignment explanation
Indices: 88288865--88289036 Score: 140
Period size: 31 Copynumber: 5.5 Consensus size: 31
88288855 TATTAGAACT
* *
88288865 AGAATCAAAATGAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
* *
88288896 AGAATCAAAATCAAAATCAGAATCAGGATTA-
1 AGAATCAAAATCAGAATCAGAATCAGG-TAAC
* * *
88288927 GGTAA-CAGAATCAGAATCAGTATCAGGTAAC
1 AG-AATCAAAATCAGAATCAGAATCAGGTAAC
* *
88288958 AGAATCAGAATCAGAA-CAAGAATCA-G-AATT
1 AGAATCAAAATCAGAATC-AGAATCAGGTAA-C
* *
88288988 AGGTAA-CAGAATCAGAATCAGTATCAGGTAAC
1 A-G-AATCAAAATCAGAATCAGAATCAGGTAAC
*
88289020 AGAATCAGAATCAGAAT
1 AGAATCAAAATCAGAAT
88289037 GTGAATGCAA
Statistics
Matches: 116, Mismatches: 13, Indels: 24
0.76 0.08 0.16
Matches are distributed among these distances:
29 2 0.02
30 9 0.08
31 94 0.81
32 9 0.08
33 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:88288952 original size:37 final size:37
Alignment explanation
Indices: 88288865--88289036 Score: 120
Period size: 37 Copynumber: 4.5 Consensus size: 37
88288855 TATTAGAACT
* * *
88288865 AGAATCAAAATGAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
* * * *
88288902 AAAATCAAAATCAGAATCAGGATTAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
88288939 AGAATCAGTATCAGGTAACAGAATCAGAATCA-G-AACAAGAATC
1 AGAATCAG-A--A--T--CAGAATCAGAATCAGGTAAC-AGAATC
* *
88288982 AGAATTAGGTAA-CAGAATCAGAATCA-GTATCAGGTAA-C
1 AGAATCA-G-AATCAGAATCAGAATCAGGTAACA-G-AATC
88289020 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
88289037 GTGAATGCAA
Statistics
Matches: 110, Mismatches: 12, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
36 2 0.02
37 61 0.55
38 11 0.10
39 2 0.02
40 1 0.01
42 5 0.05
43 13 0.12
44 15 0.14
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.18
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:88288980 original size:62 final size:62
Alignment explanation
Indices: 88288877--88289036 Score: 259
Period size: 62 Copynumber: 2.6 Consensus size: 62
88288867 AATCAAAATG
* * * * *
88288877 AGAATCAGAATCAGGTGACAGAATCAAAATCAAAATCAGAATCAGGATTAGGTAACAGAATC
1 AGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCAGAATTAGGTAACAGAATC
88288939 AGAATCAGTATCAGGTAACAGAATCAGAATCAGAA-CAAGAATCAGAATTAGGTAACAGAATC
1 AGAATCAGTATCAGGTAACAGAATCAGAATCAGAATC-AGAATCAGAATTAGGTAACAGAATC
88289001 AGAATCAGTATCAGGTAACAGAATCAGAATCAGAAT
1 AGAATCAGTATCAGGTAACAGAATCAGAATCAGAAT
88289037 GTGAATGCAA
Statistics
Matches: 91, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
61 1 0.01
62 90 0.99
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.18
Consensus pattern (62 bp):
AGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCAGAATTAGGTAACAGAATC
Found at i:88289004 original size:25 final size:25
Alignment explanation
Indices: 88288877--88289036 Score: 113
Period size: 25 Copynumber: 6.4 Consensus size: 25
88288867 AATCAAAATG
*
88288877 AGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
* * * *
88288902 AAAATCAAAATCA-G-AATCAGGATT
1 AGAATCAGAATCAGGTAA-CAGAATC
*
88288926 AGGTAA-CAGAATCA-G-AATCAGTATC
1 A-G-AATCAGAATCAGGTAA-CAGAATC
88288951 AGGTAA-CAGAATCA-G-AATCAGAA-C
1 A-G-AATCAGAATCAGGTAA-CAGAATC
*
88288975 AAGAATCAGAATTAGGTAACAGAATC
1 -AGAATCAGAATCAGGTAACAGAATC
*
88289001 AGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
88289026 AGAATCAGAAT
1 AGAATCAGAAT
88289037 GTGAATGCAA
Statistics
Matches: 113, Mismatches: 14, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
23 3 0.03
24 16 0.14
25 89 0.79
26 5 0.04
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.18
Consensus pattern (25 bp):
AGAATCAGAATCAGGTAACAGAATC
Found at i:88289027 original size:19 final size:19
Alignment explanation
Indices: 88288877--88289008 Score: 110
Period size: 19 Copynumber: 6.7 Consensus size: 19
88288867 AATCAAAATG
*
88288877 AGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGGTAAC
* *
88288896 AGAATCAAAATCA--AAATC
1 AGAATCAGAATCAGGTAA-C
* *
88288914 AGAATCAGGATTAGGTAAC
1 AGAATCAGAATCAGGTAAC
88288933 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAG----A--ATCAGGTAAC
88288958 AGAATCAGAATCA-G-AAC
1 AGAATCAGAATCAGGTAAC
*
88288975 AAGAATCAGAATTAGGTAAC
1 -AGAATCAGAATCAGGTAAC
88288995 AGAATCAGAATCAG
1 AGAATCAGAATCAG
88289009 TATCAGGTAA
Statistics
Matches: 90, Mismatches: 11, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
17 4 0.04
18 24 0.27
19 39 0.43
20 5 0.06
21 1 0.01
25 17 0.19
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.17
Consensus pattern (19 bp):
AGAATCAGAATCAGGTAAC
Found at i:88289203 original size:27 final size:26
Alignment explanation
Indices: 88289156--88289206 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
88289146 CGAGGTTACC
*
88289156 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
88289182 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
88289207 TGGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:88289509 original size:27 final size:27
Alignment explanation
Indices: 88289479--88289612 Score: 137
Period size: 27 Copynumber: 5.0 Consensus size: 27
88289469 GGGTATCTCG
* *
88289479 GTAATTCTACCTTACAGGATTATTTCA
1 GTAATTCTACCCTACAGGAGTATTTCA
* * *
88289506 GTAATCCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGAGTATTTCA
* * * *
88289533 GTATTTCTACTCTATAAGG-GTATTTCG
1 GTAATTCTACCCTA-CAGGAGTATTTCA
* *
88289560 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGAGTATTTCA
88289587 GTAATTCTACCCTACAGG-GATATTTC
1 GTAATTCTACCCTACAGGAG-TATTTC
88289613 GGTATACCCT
Statistics
Matches: 89, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
26 4 0.04
27 82 0.92
28 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGAGTATTTCA
Found at i:88289534 original size:54 final size:52
Alignment explanation
Indices: 88289469--88289642 Score: 194
Period size: 54 Copynumber: 3.3 Consensus size: 52
88289459 TACCCCATAA
* *
88289469 GGGTATCTCGGTAATTCTACCTTACAGGATTATTTCAGTAATCCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCTTACAGGA-TATTTCGGTAAT-CTACCCTACAG
* *
88289523 GGGTATTTCGGTATTTCTACTCTATA-AGGGTATTTCGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTAC-CT-TACAGGATATTTCGGTAA-TCTACCCTACAG
** *
88289577 GGGTATTTTAGTAATTCTACCCTACAGGGATATTTCGGT-A--TACCCTACAG
1 GGGTATTTCGGTAATTCTACCTTACA-GGATATTTCGGTAATCTACCCTACAG
*
88289627 GGATATTTCGGTAATT
1 GGGTATTTCGGTAATT
88289643 TTGTAAATCG
Statistics
Matches: 103, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
50 23 0.22
52 2 0.02
53 3 0.03
54 67 0.65
55 6 0.06
56 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (52 bp):
GGGTATTTCGGTAATTCTACCTTACAGGATATTTCGGTAATCTACCCTACAG
Found at i:88289576 original size:81 final size:81
Alignment explanation
Indices: 88289465--88289617 Score: 243
Period size: 81 Copynumber: 1.9 Consensus size: 81
88289455 ATTTTACCCC
* * *
88289465 ATAAGGGTATCTCGGTAATTCTACCTTACAGGATTATTTCAGTAATCCTACCCTACAGGGGTATT
1 ATAAGGGTATCTCGGTAATTCTACCCTACAGGAGTATTTCAGTAATCCTACCCTACAGGGATATT
88289530 TCGGTATTTCTACTCT
66 TCGGTATTTCTACTCT
* * * *
88289546 ATAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGATATT
1 ATAAGGGTATCTCGGTAATTCTACCCTACAGGAGTATTTCAGTAATCCTACCCTACAGGGATATT
88289611 TCGGTAT
66 TCGGTAT
88289618 ACCCTACAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (81 bp):
ATAAGGGTATCTCGGTAATTCTACCCTACAGGAGTATTTCAGTAATCCTACCCTACAGGGATATT
TCGGTATTTCTACTCT
Found at i:88289624 original size:23 final size:23
Alignment explanation
Indices: 88289594--88289639 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
88289584 TTAGTAATTC
88289594 TACCCTACAGGGATATTTCGGTA
1 TACCCTACAGGGATATTTCGGTA
88289617 TACCCTACAGGGATATTTCGGTA
1 TACCCTACAGGGATATTTCGGTA
88289640 ATTTTGTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (23 bp):
TACCCTACAGGGATATTTCGGTA
Found at i:88289695 original size:27 final size:27
Alignment explanation
Indices: 88289633--88289696 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
88289623 ACAGGGATAT
* *
88289633 TTCGGTAATTTTGTAAATCGAGGGTAA
1 TTCGGTAATTCTGTAAATCAAGGGTAA
** * *
88289660 AACGATAATTCTGTAAATCAAGGGTAC
1 TTCGGTAATTCTGTAAATCAAGGGTAA
88289687 TTCGGTAATT
1 TTCGGTAATT
88289697 TTACAAGTTG
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.34
Consensus pattern (27 bp):
TTCGGTAATTCTGTAAATCAAGGGTAA
Found at i:88289710 original size:27 final size:27
Alignment explanation
Indices: 88289680--88289748 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
88289670 CTGTAAATCA
** *
88289680 AGGGTACTTCGGTAATTTTACAAGTTG
1 AGGGTACTTCAATAATTTTACAAGTCG
* *
88289707 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTACTTCAATAATTTTACAAGTCG
* *
88289734 AGGGTATTTCTATAA
1 AGGGTACTTCAATAA
88289749 CGCCCCGTAC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.38
Consensus pattern (27 bp):
AGGGTACTTCAATAATTTTACAAGTCG
Found at i:88292649 original size:27 final size:27
Alignment explanation
Indices: 88292475--88292642 Score: 221
Period size: 27 Copynumber: 6.3 Consensus size: 27
88292465 TACAATTTCA
* *
88292475 GTAATTTCACAAATCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
*
88292502 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
* * *
88292529 GTAATTTTATAAACCAAGGGTATTTTA
1 GTAATTTTACAAACCAGGGGTATTTTG
88292556 GTAATTTTACAAACCAGGGGTATTTT-
1 GTAATTTTACAAACCAGGGGTATTTTG
* * * * *
88292582 GTGATTTTATAAACCAAGAGTATTTTA
1 GTAATTTTACAAACCAGGGGTATTTTG
*
88292609 GTAATTTTACAAACCAGGCGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
88292636 GTAATTT
1 GTAATTT
88292643 GGTAAACTAA
Statistics
Matches: 122, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 22 0.18
27 100 0.82
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAACCAGGGGTATTTTG
Found at i:88292658 original size:53 final size:54
Alignment explanation
Indices: 88292494--88292642 Score: 246
Period size: 53 Copynumber: 2.8 Consensus size: 54
88292484 CAAATCAGGG
* * *
88292494 GTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGG
1 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGA
*
88292548 GTATTTTAGTAATTTTACAAACCAGGGGTATTTT-GTGATTTTATAAACCAAGA
1 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGA
*
88292601 GTATTTTAGTAATTTTACAAACCAGGCGTATTTTGGTAATTT
1 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
88292643 GGTAAACTAA
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 50 0.57
54 38 0.43
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.42
Consensus pattern (54 bp):
GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGA
Found at i:88295225 original size:9 final size:9
Alignment explanation
Indices: 88295213--88295240 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
88295203 CTTAAACACC
88295213 TTGAGTGAT
1 TTGAGTGAT
88295222 TTGAGTGAT
1 TTGAGTGAT
88295231 TTGAGTGAT
1 TTGAGTGAT
88295240 T
1 T
88295241 ATTTAGTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.46
Consensus pattern (9 bp):
TTGAGTGAT
Found at i:88298334 original size:27 final size:27
Alignment explanation
Indices: 88298237--88298350 Score: 142
Period size: 26 Copynumber: 4.3 Consensus size: 27
88298227 TACCAAAGTA
* * *
88298237 CCTCGATTTATAGAATTATTATTTTA-
1 CCTCGATTTACAAAATTACTATTTTAC
* *
88298263 CCTTGATTTACAAAATTACTGTTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
*
88298290 CCTCGA-TTACAAAATTACTGTTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
*
88298316 CCTCGATTTACAAAATTACCATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
*
88298343 CCTTGATT
1 CCTCGATT
88298351 GTGAAATTAC
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
26 47 0.61
27 30 0.39
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (27 bp):
CCTCGATTTACAAAATTACTATTTTAC
Found at i:88298370 original size:53 final size:53
Alignment explanation
Indices: 88298267--88298370 Score: 118
Period size: 53 Copynumber: 2.0 Consensus size: 53
88298257 ATTTTACCTT
** ****
88298267 GATTTACAAAATTACTGTTTTACCCTCGATTACAAAATTACTGTTTTACCCTC
1 GATTTACAAAATTACCATTTTACCCTCGATTACAAAATTACTAAAATACCCTC
* ***
88298320 GATTTACAAAATTACCATTTTACCCTTGATTGTGAAATTACTAAAATACCC
1 GATTTACAAAATTACCATTTTACCCTCGATTACAAAATTACTAAAATACCC
88298371 CTATAGGGTA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
53 41 1.00
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.38
Consensus pattern (53 bp):
GATTTACAAAATTACCATTTTACCCTCGATTACAAAATTACTAAAATACCCTC
Found at i:88298481 original size:26 final size:27
Alignment explanation
Indices: 88298349--88298481 Score: 107
Period size: 27 Copynumber: 5.0 Consensus size: 27
88298339 TTACCCTTGA
* *
88298349 TTGTGAAATTACTAAAATACCCCT-AT
1 TTGTAAAATTACCAAAATACCCCTAAT
** * *
88298375 AGGGTAGAATTACCAAAATACCCCTAGT
1 -TTGTAAAATTACCAAAATACCCCTAAT
** *
88298403 TTGTAAAATTACCAAAATACGACTAGT
1 TTGTAAAATTACCAAAATACCCCTAAT
*
88298430 TATG--AAA-TACCGAAATA-CCCTCAAT
1 T-TGTAAAATTACCAAAATACCCCT-AAT
88298455 TTGTAAAATTACC-AAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCCCTAAT
88298481 T
1 T
88298482 ACACAATTAA
Statistics
Matches: 84, Mismatches: 15, Indels: 15
0.74 0.13 0.13
Matches are distributed among these distances:
24 4 0.05
25 12 0.14
26 15 0.18
27 50 0.60
28 3 0.04
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAAT
Found at i:88300687 original size:40 final size:40
Alignment explanation
Indices: 88300589--88300851 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
88300579 TCCTCGTTCA
* * * * *
88300589 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
88300628 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
88300668 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
88300708 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
88300748 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
88300788 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
88300828 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
88300852 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:88308632 original size:40 final size:40
Alignment explanation
Indices: 88308534--88308796 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
88308524 TCCTCGTTCA
* * * * *
88308534 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
88308573 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
88308613 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
88308653 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
88308693 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
88308733 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
88308773 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
88308797 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:88310804 original size:34 final size:34
Alignment explanation
Indices: 88310761--88310828 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
88310751 TAGGGAGAGT
88310761 GGTGGAAATTAACTGGAGGATGTTTCCATTGTGG
1 GGTGGAAATTAACTGGAGGATGTTTCCATTGTGG
88310795 GGTGGAAATTAACTGGAGGATGTTTCCATTGTGG
1 GGTGGAAATTAACTGGAGGATGTTTCCATTGTGG
88310829 ATCCACCGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.24, C:0.09, G:0.35, T:0.32
Consensus pattern (34 bp):
GGTGGAAATTAACTGGAGGATGTTTCCATTGTGG
Found at i:88314769 original size:3 final size:3
Alignment explanation
Indices: 88314761--88314785 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
88314751 TTGAATTATG
88314761 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
88314786 GAATTAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:88318382 original size:45 final size:44
Alignment explanation
Indices: 88318215--88318383 Score: 100
Period size: 45 Copynumber: 3.9 Consensus size: 44
88318205 ATATCAAACA
* ** *
88318215 ATGCCAACGTCCCAGACGTGGTCTTACATGCTA-TC-TCATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAACACAT-ATATCG
* * * *
88318258 ATTCC-ACTGTCCCAGAAAG-GGTTTTACACG-AAC-CAAATA-CG
1 ATGCCAAC-GTCCCAG-ACGTGGTCTTACACGAAACACATATATCG
* * * * * ** *
88318299 ATACCGATGTCTCAGACATGGTCTTACTTGTAACCACATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAACACATATATCG
88318344 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATA
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAACACATA
88318384 GCATAGTCCT
Statistics
Matches: 91, Mismatches: 25, Indels: 18
0.68 0.19 0.13
Matches are distributed among these distances:
40 1 0.01
41 20 0.22
42 8 0.09
43 22 0.24
44 7 0.08
45 33 0.36
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAACACATATATCG
Found at i:88319584 original size:21 final size:20
Alignment explanation
Indices: 88319558--88319614 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 20
88319548 AGATAGTTAC
88319558 TGAATAACTAAATTACTGTAT
1 TGAATAACTAAA-TACTGTAT
** *
88319579 TGAATAA-TTGATAGT-TAT
1 TGAATAACTAAATACTGTAT
88319597 TGAATAACTAAACTACTG
1 TGAATAACTAAA-TACTG
88319615 CACTGAATAT
Statistics
Matches: 27, Mismatches: 6, Indels: 6
0.69 0.15 0.15
Matches are distributed among these distances:
18 10 0.37
19 5 0.19
20 5 0.19
21 7 0.26
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.37
Consensus pattern (20 bp):
TGAATAACTAAATACTGTAT
Found at i:88319603 original size:39 final size:39
Alignment explanation
Indices: 88319549--88319661 Score: 158
Period size: 39 Copynumber: 2.9 Consensus size: 39
88319539 GGCTGTTACA
*
88319549 GATAGTTACTGAATAACTAAATTACTGTATTGAATAATT
1 GATAGTTACTGAATAACTAAATTACTGTACTGAATAATT
* * * *
88319588 GATAGTTATTGAATAACTAAACTACTGCACTGAATATTT
1 GATAGTTACTGAATAACTAAATTACTGTACTGAATAATT
*
88319627 GATAGTTACTGAATGACTAAATTA--GTACTGAATAA
1 GATAGTTACTGAATAACTAAATTACTGTACTGAATAA
88319662 CTAATTGTTA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
37 9 0.14
39 55 0.86
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (39 bp):
GATAGTTACTGAATAACTAAATTACTGTACTGAATAATT
Found at i:88328035 original size:39 final size:39
Alignment explanation
Indices: 88327929--88328037 Score: 200
Period size: 39 Copynumber: 2.8 Consensus size: 39
88327919 TAATCTAAGA
* *
88327929 AACATACTCATAGTAGGTCAGTCCAATACGTTGTTCTCT
1 AACATACTCATAGTAGGTCAGTCCAATATGTTGTTCCCT
88327968 AACATACTCATAGTAGGTCAGTCCAATATGTTGTTCCCT
1 AACATACTCATAGTAGGTCAGTCCAATATGTTGTTCCCT
88328007 AACATACTCATAGTAGGTCAGTCCAATATGT
1 AACATACTCATAGTAGGTCAGTCCAATATGT
88328038 GTTGATTTTG
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (39 bp):
AACATACTCATAGTAGGTCAGTCCAATATGTTGTTCCCT
Found at i:88331636 original size:41 final size:40
Alignment explanation
Indices: 88331573--88331796 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
88331563 TATTCGGATG
*
88331573 ATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* * *
88331614 ATATCCGGGCTAAGTCCTGAAGGCATTTGCGCTAGTGACG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
88331654 ATATCCGGGCTAAGACCTGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* *
88331695 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
88331735 ATATCCGGGCTAAGTCCCAAAGACATTTGTGCGATTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACT
* *
88331775 ATATCC-GGTTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
88331797 TACTTGGGTT
Statistics
Matches: 162, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 12 0.07
40 90 0.56
41 60 0.37
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:88331707 original size:81 final size:81
Alignment explanation
Indices: 88331572--88331796 Score: 294
Period size: 81 Copynumber: 2.8 Consensus size: 81
88331562 TTATTCGGAT
*
88331572 GATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATATCCGGGCTAAGTCCTGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
*
88331637 CATTTGCGCTAGTGAC
66 CATTTGCGCGAGTGAC
* *
88331653 GATATCCGGGCTAAGACCTGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
* *
88331718 CATTTGTGCGAGTTAC
66 CATTTGCGCGAGTGAC
* * * * * * * *
88331734 TATATCCGGGCTAAGTCCCAAAGACA-TTTGTGCGATTTG-CTATATCC-GGTTAAATCCCGAAG
1 GATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTA-GTGACTATATCCGGGCTAAGTCCCGAAG
88331796 G
65 G
88331797 TACTTGGGTT
Statistics
Matches: 128, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
79 14 0.11
80 16 0.12
81 98 0.77
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (81 bp):
GATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
CATTTGCGCGAGTGAC
Found at i:88338096 original size:40 final size:39
Alignment explanation
Indices: 88337906--88338089 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
88337896 CGAATGATGT
* * *
88337906 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
88337946 CCGGACAAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
88337986 CCGGACTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
88338024 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
88338065 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
88338090 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 34 0.27
40 81 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:88345465 original size:27 final size:26
Alignment explanation
Indices: 88345413--88345465 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
88345403 AAAAAACCAC
* * *
88345413 AAAAAATAGAGAATAAAGAATAATAA
1 AAAAAATAAAGAAGAAAAAATAATAA
*
88345439 AAAAAATTAAAGAAGAAAAAATGATAA
1 AAAAAA-TAAAGAAGAAAAAATAATAA
88345466 TAATTAATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15
Consensus pattern (26 bp):
AAAAAATAAAGAAGAAAAAATAATAA
Found at i:88350075 original size:15 final size:17
Alignment explanation
Indices: 88350057--88350094 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
88350047 TAAAAAATAT
88350057 AATTAACA-AAATTT-A
1 AATTAACACAAATTTAA
*
88350072 AATTGACACAAATTTAA
1 AATTAACACAAATTTAA
88350089 AATTAA
1 AATTAA
88350095 AGTCCTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 7 0.37
16 6 0.32
17 6 0.32
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.32
Consensus pattern (17 bp):
AATTAACACAAATTTAA
Found at i:88355029 original size:7 final size:7
Alignment explanation
Indices: 88355017--88355043 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
88355007 TGTTGGAATG
88355017 ATGAAGC
1 ATGAAGC
88355024 ATGAAGC
1 ATGAAGC
88355031 ATGAAGC
1 ATGAAGC
88355038 ATGAAG
1 ATGAAG
88355044 AGAATTCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.11, G:0.30, T:0.15
Consensus pattern (7 bp):
ATGAAGC
Found at i:88356071 original size:34 final size:34
Alignment explanation
Indices: 88356028--88356099 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
88356018 TACTATCAAT
88356028 ACACTTAAGAATGAAAAGTAATGGACTAAGTGTA
1 ACACTTAAGAATGAAAAGTAATGGACTAAGTGTA
88356062 ACACTTAAGAATGAAAAGTAATGGACTAAGTGTA
1 ACACTTAAGAATGAAAAGTAATGGACTAAGTGTA
88356096 ACAC
1 ACAC
88356100 CCCTTACCAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.22
Consensus pattern (34 bp):
ACACTTAAGAATGAAAAGTAATGGACTAAGTGTA
Found at i:88366902 original size:68 final size:68
Alignment explanation
Indices: 88366753--88366909 Score: 167
Period size: 68 Copynumber: 2.3 Consensus size: 68
88366743 TAGACAATTC
* * * *
88366753 ATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACAT
1 ATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACAC
*
88366818 TTAT
65 ATAT
* * *
88366822 CTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTAC
1 ATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC
88366884 TACATAGT
63 -ACATA-T
88366892 ATCTCGTAGCTCTCTTGT
1 ATCTCGTAGCTCTCTTGT
88366910 ACACATGATG
Statistics
Matches: 74, Mismatches: 9, Indels: 11
0.79 0.10 0.12
Matches are distributed among these distances:
68 36 0.49
69 6 0.08
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (68 bp):
ATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACACA
TAT
Found at i:88372314 original size:25 final size:24
Alignment explanation
Indices: 88372277--88372323 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
88372267 GGGCGATATT
* *
88372277 TTATTTTATTTAATATTGATATAA
1 TTATTTTAATTAATATTAATATAA
88372301 TTATATTTAATTAATATTAATAT
1 TTAT-TTTAATTAATATTAATAT
88372324 TACTATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (24 bp):
TTATTTTAATTAATATTAATATAA
Found at i:88372330 original size:25 final size:25
Alignment explanation
Indices: 88372281--88372330 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
88372271 GATATTTTAT
* * *
88372281 TTTATTTAATATTGATATAATTATA
1 TTTAATTAATATTAATATAACTATA
*
88372306 TTTAATTAATATTAATATTACTATA
1 TTTAATTAATATTAATATAACTATA
88372331 AAACTTAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (25 bp):
TTTAATTAATATTAATATAACTATA
Found at i:88372985 original size:17 final size:19
Alignment explanation
Indices: 88372958--88372995 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
88372948 TTCAACGTAA
*
88372958 TATTATATATATAATT-TT
1 TATTATATATACAATTATT
88372976 TATT-TATATACAATTATT
1 TATTATATATACAATTATT
88372994 TA
1 TA
88372996 CATAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (19 bp):
TATTATATATACAATTATT
Found at i:88374266 original size:19 final size:20
Alignment explanation
Indices: 88374242--88374281 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
88374232 AATATCAACA
88374242 TATACTATATT-A-TAAAAAT
1 TATACT-TATTCATTAAAAAT
88374261 TATACTTATTCATTAAAAAT
1 TATACTTATTCATTAAAAAT
88374281 T
1 T
88374282 GTTATATCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 7 0.37
20 8 0.42
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.45
Consensus pattern (20 bp):
TATACTTATTCATTAAAAAT
Found at i:88374416 original size:24 final size:24
Alignment explanation
Indices: 88374384--88374438 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
88374374 TAAACTTTCC
88374384 AAAGAAACCCTATATCAATTTAGT
1 AAAGAAACCCTATATCAATTTAGT
*
88374408 AAAGAAACCCTATATCAATTTATT
1 AAAGAAACCCTATATCAATTTAGT
88374432 AAAGAAA
1 AAAGAAA
88374439 AAACAAATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.51, C:0.15, G:0.07, T:0.27
Consensus pattern (24 bp):
AAAGAAACCCTATATCAATTTAGT
Found at i:88376055 original size:55 final size:55
Alignment explanation
Indices: 88375971--88376084 Score: 219
Period size: 55 Copynumber: 2.1 Consensus size: 55
88375961 ATGGTACGGG
88375971 TTAATCAAATATAAATTAAGTTAGAAGTGGATAAAATTAATCTTATATTCAAAAT
1 TTAATCAAATATAAATTAAGTTAGAAGTGGATAAAATTAATCTTATATTCAAAAT
*
88376026 TTAATCGAATATAAATTAAGTTAGAAGTGGATAAAATTAATCTTATATTCAAAAT
1 TTAATCAAATATAAATTAAGTTAGAAGTGGATAAAATTAATCTTATATTCAAAAT
88376081 TTAA
1 TTAA
88376085 CATTGAGCGT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 58 1.00
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.37
Consensus pattern (55 bp):
TTAATCAAATATAAATTAAGTTAGAAGTGGATAAAATTAATCTTATATTCAAAAT
Found at i:88381149 original size:25 final size:25
Alignment explanation
Indices: 88381101--88381158 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
88381091 ATAAAACCTA
*
88381101 AAAATGAAATAGTATTAAAGGAAGAT
1 AAAAT-AAAAAGTATTAAAGGAAGAT
88381127 AAAATAAAAAGTACTTAAA-GAAGAT
1 AAAATAAAAAGTA-TTAAAGGAAGAT
88381152 -AAATAAA
1 AAAATAAA
88381159 GATAAAAGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 7 0.23
25 13 0.43
26 10 0.33
ACGTcount: A:0.64, C:0.02, G:0.14, T:0.21
Consensus pattern (25 bp):
AAAATAAAAAGTATTAAAGGAAGAT
Found at i:88401100 original size:20 final size:20
Alignment explanation
Indices: 88401062--88401100 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
88401052 TAAATTTTAA
* * *
88401062 ATATAAAATATTTATCAATT
1 ATATAAAATACTCACCAATT
88401082 ATATAAAATACTCACCAAT
1 ATATAAAATACTCACCAAT
88401101 AAACTCTAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (20 bp):
ATATAAAATACTCACCAATT
Found at i:88402021 original size:5 final size:5
Alignment explanation
Indices: 88401995--88402035 Score: 50
Period size: 5 Copynumber: 8.6 Consensus size: 5
88401985 TATAAATTAC
* *
88401995 ATAAT AT-AT A-AAA ATAAC ATAAT ATAAT ATAAT ATAAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
88402036 CATAAACACT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
4 5 0.16
5 26 0.84
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (5 bp):
ATAAT
Found at i:88406348 original size:23 final size:21
Alignment explanation
Indices: 88406322--88406365 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
88406312 CTAATTATTT
*
88406322 TAAAAGGTTAATTAGTAATTAAA
1 TAAAAGGTAAATTA--AATTAAA
*
88406345 TAAATGGTAAATTAAATTAAA
1 TAAAAGGTAAATTAAATTAAA
88406366 GGATGGTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
23 12 0.63
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (21 bp):
TAAAAGGTAAATTAAATTAAA
Found at i:88407333 original size:18 final size:18
Alignment explanation
Indices: 88407312--88407362 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
88407302 ACAATTCTTT
88407312 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCTCC
* *
88407330 TCTCTTCATCTATTTCTTC
1 TCTCTTCTTCT-TTTCTCC
88407349 T-TCTTCTTCTTTTC
1 TCTCTTCTTCTTTTC
88407363 CTCTATAGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 4 0.14
18 18 0.62
19 7 0.24
ACGTcount: A:0.04, C:0.33, G:0.00, T:0.63
Consensus pattern (18 bp):
TCTCTTCTTCTTTTCTCC
Found at i:88408605 original size:28 final size:28
Alignment explanation
Indices: 88408559--88408667 Score: 130
Period size: 28 Copynumber: 3.9 Consensus size: 28
88408549 GGAGGAAGCG
* * *
88408559 TTCTGGCGGCTCTGTCACAAATATTTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
88408587 TTCTGGTGGCTTTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
88408615 TTCTGGTGGCCCTGCCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
88408643 ATCTGGTGACTCTGTCAC-AATATCT
1 TTCTGGTGGCTCTGCCACAAATATCT
88408668 ATTCTGGCAG
Statistics
Matches: 69, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 6 0.09
28 63 0.91
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:88415228 original size:18 final size:18
Alignment explanation
Indices: 88415207--88415257 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
88415197 AAAATTCTTT
88415207 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCTCC
* * *
88415225 TCTCTTCATCTATTTTTTC
1 TCTCTTCTTCT-TTTCTCC
88415244 T-TCTTCTTCTTTTC
1 TCTCTTCTTCTTTTC
88415258 CTCTATAGCT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
17 3 0.11
18 18 0.67
19 6 0.22
ACGTcount: A:0.04, C:0.31, G:0.00, T:0.65
Consensus pattern (18 bp):
TCTCTTCTTCTTTTCTCC
Found at i:88416532 original size:28 final size:26
Alignment explanation
Indices: 88416457--88416545 Score: 83
Period size: 28 Copynumber: 3.3 Consensus size: 26
88416447 TGGAGGAAGC
* *
88416457 GTTCTGGTGGCTCTGTCACAAATATCT
1 GTTCTGGTGACTCTCTCAC-AATATCT
*
88416484 GTTTCTGGTAGCCT-TGC-CACAATTATCT
1 G-TTCTGGT-GACTCT-CTCACAA-TATCT
88416512 GTATCTGGTGACTCTCTCACAATATCT
1 GT-TCTGGTGACTCTCTCACAATATCT
88416539 GTTCTGG
1 GTTCTGG
88416546 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 3, Indels: 15
0.74 0.04 0.21
Matches are distributed among these distances:
26 5 0.10
27 15 0.29
28 29 0.56
29 3 0.06
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (26 bp):
GTTCTGGTGACTCTCTCACAATATCT
Found at i:88425082 original size:19 final size:19
Alignment explanation
Indices: 88425054--88425094 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
88425044 TCGGGACCAA
* * *
88425054 TTTGATAACTTATAAAAGT
1 TTTGAAAACTTAGAAAAAT
88425073 TTTGAAAACTTAGAAAAAT
1 TTTGAAAACTTAGAAAAAT
88425092 TTT
1 TTT
88425095 CAACTTTTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (19 bp):
TTTGAAAACTTAGAAAAAT
Found at i:88433022 original size:6 final size:6
Alignment explanation
Indices: 88433013--88433051 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
88433003 ACATGAACAT
* *
88433013 AAAATA AAAATA AAAATA AAAATA AAACTA AAAAGA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA
88433052 CAAATAAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (6 bp):
AAAATA
Found at i:88435572 original size:273 final size:273
Alignment explanation
Indices: 88435078--88435628 Score: 1030
Period size: 273 Copynumber: 2.0 Consensus size: 273
88435068 ATAGTTCTAG
*
88435078 CAATTGCTAAAAAGGGTCTACCTAAAATTAAATGTACTTCATTACCCTCATCCACGTCTAAAACA
1 CAATTGCTAAAAAGGGTCGACCTAAAATTAAATGTACTTCATTACCCTCATCCACGTCTAAAACA
88435143 ACAAAATCAACTAGGAATATGAATTTATCAATTTTTACGAGAACATATTCAATAATACCCCTAGG
66 ACAAAATCAACTAGGAATATGAATTTATCAATTTTTACGAGAACATATTCAATAATACCCCTAGG
*
88435208 AAATCTAGTGGCTCTATCTGCTAATTGAATACTCATCCTAGTTTGTTTGAGTTTCCCAATACCTA
131 AAATCTAATGGCTCTATCTGCTAATTGAATACTCATCCTAGTTTGTTTGAGTTTCCCAATACCTA
* *
88435273 ATTGCTTAAACATTTTATAGGGCATGACATTAATACTAGCCCCTAAATTAGCTAAATCATTGTTA
196 ATTACTTAAACATTTTATAGGGCATGACATTAATACTAGCCCCTAAATCAGCTAAATCATTGTTA
*
88435338 ATAGTTAAACTAC
261 ATAGTCAAACTAC
* * *
88435351 CAATTGTTAAAAAGGGTCGACCTAAAATTAAATGTACTTCATTACCCTCATCTATGTCTAAAACA
1 CAATTGCTAAAAAGGGTCGACCTAAAATTAAATGTACTTCATTACCCTCATCCACGTCTAAAACA
88435416 ACAAAATCAACTAGGAATATGAATTTATCAATTTTTACGAGAACATATTCAATAATACCCCTAGG
66 ACAAAATCAACTAGGAATATGAATTTATCAATTTTTACGAGAACATATTCAATAATACCCCTAGG
88435481 AAATCTAATGGCTCTATCTGCTAATTGAATACTCATCCTAGTTTGTTTGAGTTTCCCAATACCTA
131 AAATCTAATGGCTCTATCTGCTAATTGAATACTCATCCTAGTTTGTTTGAGTTTCCCAATACCTA
88435546 ATTACTTAAACATTTTATAGGGCATGACATTAATACTAGCCCCTAAATCAGCTAAATCATTGTTA
196 ATTACTTAAACATTTTATAGGGCATGACATTAATACTAGCCCCTAAATCAGCTAAATCATTGTTA
88435611 ATAGTCAAACTAC
261 ATAGTCAAACTAC
88435624 CAATT
1 CAATT
88435629 AAATAAGGAA
Statistics
Matches: 270, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
273 270 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.33
Consensus pattern (273 bp):
CAATTGCTAAAAAGGGTCGACCTAAAATTAAATGTACTTCATTACCCTCATCCACGTCTAAAACA
ACAAAATCAACTAGGAATATGAATTTATCAATTTTTACGAGAACATATTCAATAATACCCCTAGG
AAATCTAATGGCTCTATCTGCTAATTGAATACTCATCCTAGTTTGTTTGAGTTTCCCAATACCTA
ATTACTTAAACATTTTATAGGGCATGACATTAATACTAGCCCCTAAATCAGCTAAATCATTGTTA
ATAGTCAAACTAC
Found at i:88444028 original size:52 final size:51
Alignment explanation
Indices: 88443955--88444087 Score: 135
Period size: 52 Copynumber: 2.6 Consensus size: 51
88443945 GTGAGAACAC
* * * * *
88443955 GTGTAGTACTATGTGTAGGCTACTATC-TATTTAAGATGGTTTTAGATCACGT
1 GTGTAGTACTAAGTGAAGGCTACTATCGTATATAAGATAG--TTAGATCACAT
* * * *
88444007 GTGTAGTACTAAGTGAAGGCTACTA-CGTGTATCAGATAGTTAGTTCGCAT
1 GTGTAGTACTAAGTGAAGGCTACTATCGTATATAAGATAGTTAGATCACAT
*
88444057 GTGTAGTACTAAGTGCAGGCTACTATGCGTA
1 GTGTAGTACTAAGTGAAGGCTACTAT-CGTA
88444088 CCCGACAACT
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
50 32 0.48
51 1 0.01
52 34 0.51
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.35
Consensus pattern (51 bp):
GTGTAGTACTAAGTGAAGGCTACTATCGTATATAAGATAGTTAGATCACAT
Found at i:88444069 original size:50 final size:50
Alignment explanation
Indices: 88443996--88444231 Score: 206
Period size: 50 Copynumber: 4.7 Consensus size: 50
88443986 TAAGATGGTT
* * * *
88443996 TTAGATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTATCAGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * * * *
88444046 TTAGTTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* ** ** * *
88444096 CTACAATCACGCGTGTAGTACTAAGTGCAGGCTACTACGAGTATCAGATAG
1 TTA-GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * * *
88444147 TTAGGTCACGTGTGTAGTATTAAGTGCAAGTTATTACGTGTACCGGATTA-
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAG
* *
88444197 TT-GGTCGCATGTGTAGTTCTAAGTGCAGGCTACTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
88444232 TTCCTACCAG
Statistics
Matches: 144, Mismatches: 40, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
49 26 0.18
50 78 0.54
51 40 0.28
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
Found at i:88444190 original size:101 final size:101
Alignment explanation
Indices: 88444000--88444190 Score: 274
Period size: 101 Copynumber: 1.9 Consensus size: 101
88443990 ATGGTTTTAG
* * * *
88444000 ATCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTATCAGATAGTTAGTTCGCATGTGTAGTA
1 ATCACGCGTGTAGTACTAAGTGAAGGCTACTACGAGTATCAGATAGTTAGGTCACATGTGTAGTA
* *
88444065 CTAAGTGCAGGCTACTATGCGTACCCGACAACTACA
66 CTAAGTGCAAGCTACTACGCGTACCCGACAACTACA
* *
88444101 ATCACGCGTGTAGTACTAAGTGCAGGCTACTACGAGTATCAGATAGTTAGGTCACGTGTGTAGTA
1 ATCACGCGTGTAGTACTAAGTGAAGGCTACTACGAGTATCAGATAGTTAGGTCACATGTGTAGTA
* * * *
88444166 TTAAGTGCAAGTTATTACGTGTACC
66 CTAAGTGCAAGCTACTACGCGTACC
88444191 GGATTATTGG
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
101 78 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (101 bp):
ATCACGCGTGTAGTACTAAGTGAAGGCTACTACGAGTATCAGATAGTTAGGTCACATGTGTAGTA
CTAAGTGCAAGCTACTACGCGTACCCGACAACTACA
Found at i:88448079 original size:39 final size:40
Alignment explanation
Indices: 88447984--88448245 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
88447974 TTGAATGATG
*
88447984 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
88448022 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
88448063 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
88448102 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
88448141 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
88448180 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* * *
88448219 AACCGGGCTATGTCTCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
88448246 AACGAGGAGC
Statistics
Matches: 201, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
39 132 0.66
40 57 0.28
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:88463323 original size:20 final size:20
Alignment explanation
Indices: 88463295--88463339 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
88463285 GATTTAAAGT
*
88463295 ATATTTTAATCTAAATCTAA
1 ATATATTAATCTAAATCTAA
88463315 ATATATTAATCTAAATCTAA
1 ATATATTAATCTAAATCTAA
88463335 ATATA
1 ATATA
88463340 ATTCGCACGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (20 bp):
ATATATTAATCTAAATCTAA
Found at i:88465182 original size:21 final size:22
Alignment explanation
Indices: 88465158--88465198 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
88465148 ATATCAATTT
*
88465158 AATTATATAG-ATATAAAAGGG
1 AATTAAATAGAATATAAAAGGG
*
88465179 AATTAAATTGAATATAAAAG
1 AATTAAATAGAATATAAAAG
88465199 AATACTTATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.29
Consensus pattern (22 bp):
AATTAAATAGAATATAAAAGGG
Found at i:88472268 original size:6 final size:6
Alignment explanation
Indices: 88472254--88472298 Score: 54
Period size: 6 Copynumber: 7.0 Consensus size: 6
88472244 ATATTTTATT
*
88472254 TTTTCAA TTTTAA TTTTAA TTTTATT TTTTCAA TTTTAA TTTTAA
1 TTTT-AA TTTTAA TTTTAA TTTTA-A TTTT-AA TTTTAA TTTTAA
88472299 CTTTGTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
6 21 0.62
7 12 0.35
8 1 0.03
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (6 bp):
TTTTAA
Found at i:88472275 original size:26 final size:26
Alignment explanation
Indices: 88472246--88472308 Score: 108
Period size: 26 Copynumber: 2.4 Consensus size: 26
88472236 CTATTAACAT
88472246 ATTTTATTTTTTCAATTTTAATTTTA
1 ATTTTATTTTTTCAATTTTAATTTTA
88472272 ATTTTATTTTTTCAATTTTAATTTTA
1 ATTTTATTTTTTCAATTTTAATTTTA
* *
88472298 ACTTTGTTTTT
1 ATTTTATTTTT
88472309 AGAAAAAAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.70
Consensus pattern (26 bp):
ATTTTATTTTTTCAATTTTAATTTTA
Found at i:88483374 original size:20 final size:21
Alignment explanation
Indices: 88483335--88483376 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
88483325 AGCATACAGT
*
88483335 TATATTTTAAAGAATAAAATA
1 TATATCTTAAAGAATAAAATA
*
88483356 TATATCTTAAA-ATTAAAATA
1 TATATCTTAAAGAATAAAATA
88483376 T
1 T
88483377 TATTATGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
TATATCTTAAAGAATAAAATA
Found at i:88483770 original size:20 final size:20
Alignment explanation
Indices: 88483729--88483770 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
88483719 GTAAATAATT
*
88483729 ATTTAATATATTTTACTTTC
1 ATTTAATATATTTTACTCTC
*
88483749 ATTTAATTTAATTTTA-TCTC
1 ATTTAATAT-ATTTTACTCTC
88483769 AT
1 AT
88483771 AGCTTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.60
Consensus pattern (20 bp):
ATTTAATATATTTTACTCTC
Found at i:88484794 original size:29 final size:30
Alignment explanation
Indices: 88484743--88484810 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 30
88484733 TTTATTATGG
*
88484743 TGTACTTGTACTTTTATAAAATGTTTAACGT
1 TGTACTTGTAC-TTTAGAAAATGTTTAACGT
*
88484774 TGTACTTGTA-TTTAGAAAATGTTTAATGT
1 TGTACTTGTACTTTAGAAAATGTTTAACGT
*
88484803 AGTACTTG
1 TGTACTTG
88484811 AATTATCAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 24 0.71
31 10 0.29
ACGTcount: A:0.29, C:0.07, G:0.16, T:0.47
Consensus pattern (30 bp):
TGTACTTGTACTTTAGAAAATGTTTAACGT
Found at i:88484821 original size:29 final size:28
Alignment explanation
Indices: 88484756--88484824 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 28
88484746 ACTTGTACTT
* *
88484756 TTATAAAATGTTTAACGTTGTACTTGTAT
1 TTATAAAATGTTTAACGTAGTACTTG-AA
* *
88484785 TTAGAAAATGTTTAATGTAGTACTTGAA
1 TTATAAAATGTTTAACGTAGTACTTGAA
88484813 TTATCAAAATGT
1 TTAT-AAAATGT
88484825 GTTTTATTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 4 0.12
29 30 0.88
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.43
Consensus pattern (28 bp):
TTATAAAATGTTTAACGTAGTACTTGAA
Found at i:88485059 original size:56 final size:56
Alignment explanation
Indices: 88484980--88485133 Score: 209
Period size: 56 Copynumber: 2.8 Consensus size: 56
88484970 AGTAGTTAGG
* * * * **
88484980 TAGGAATCAAATTACTAAAAGATAATATCCCATAACAATATTCTATAATATCTTAT
1 TAGGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCCTATAACATCCCAT
* * * * *
88485036 TAGGAAACAAATTGCTAAGAGATAATATCTCATAATAATATCCTATCACATCCCGT
1 TAGGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCCTATAACATCCCAT
88485092 TAGGAATCAAATTGCTAAAAGATAATATCCCATAATAATATC
1 TAGGAATCAAATTGCTAAAAGATAATATCCCATAATAATATC
88485134 TTAACACCCC
Statistics
Matches: 84, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 84 1.00
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.31
Consensus pattern (56 bp):
TAGGAATCAAATTGCTAAAAGATAATATCCCATAATAATATCCTATAACATCCCAT
Found at i:88487961 original size:40 final size:39
Alignment explanation
Indices: 88487896--88487981 Score: 100
Period size: 40 Copynumber: 2.2 Consensus size: 39
88487886 TATATATATA
* *
88487896 TAGCCAAAGCTATCTCAAATTGCACACCAAATGCCACTTT
1 TAGCCGAAGCTATCTCAAATCGCACACCAAATGCCA-TTT
* * * * *
88487936 TAGCCGAAGCTATTTCGAATCGCACACTAAGTGTCATTT
1 TAGCCGAAGCTATCTCAAATCGCACACCAAATGCCATTT
88487975 TAGCCGA
1 TAGCCGA
88487982 TAAGTCGTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 10 0.26
40 29 0.74
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (39 bp):
TAGCCGAAGCTATCTCAAATCGCACACCAAATGCCATTT
Found at i:88503344 original size:68 final size:68
Alignment explanation
Indices: 88503196--88503351 Score: 156
Period size: 68 Copynumber: 2.2 Consensus size: 68
88503186 AGCCGATTTT
* * * **
88503196 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAATCACGCATGCGACCTAGCTATATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACC-GGAATCACACATGCGACCTAGCTATACA
*
88503261 TATC
65 TATA
* *
88503265 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-CC-GTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACCGGAATCACACATGCGACCTAGCTA-T
88503327 ACATAGTA
62 ACATA-TA
*
88503335 TCTCGTAGCTTTCTTGT
1 TCTCGTAGCTCTCTTGT
88503352 ACACATGATG
Statistics
Matches: 73, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
68 33 0.45
69 7 0.10
70 7 0.10
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACCGGAATCACACATGCGACCTAGCTATACAT
ATA
Found at i:88512797 original size:19 final size:19
Alignment explanation
Indices: 88512773--88512812 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
88512763 GAAACCCGTC
* *
88512773 AGGACCACTATTGTTTGAT
1 AGGACCAATACTGTTTGAT
88512792 AGGACCAATACTGTTTGAT
1 AGGACCAATACTGTTTGAT
88512811 AG
1 AG
88512813 TGAGATCGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (19 bp):
AGGACCAATACTGTTTGAT
Found at i:88525486 original size:46 final size:46
Alignment explanation
Indices: 88525312--88525496 Score: 205
Period size: 46 Copynumber: 4.0 Consensus size: 46
88525302 CACTTGTGTG
* * * *
88525312 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGTCAC-ATTATGTG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTA
* * * *
88525358 AGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGATG-A
1 AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA
*
88525405 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGTA
1 -AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA
* *
88525452 AGCCAGTGTAAGACATGTCTGGGATATGCATCGG-CTACGAGATGT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGT
88525497 GTCAGTGTAG
Statistics
Matches: 119, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
45 2 0.02
46 66 0.55
47 28 0.24
48 22 0.18
49 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA
Found at i:88528596 original size:27 final size:27
Alignment explanation
Indices: 88528566--88528963 Score: 429
Period size: 27 Copynumber: 14.7 Consensus size: 27
88528556 TTAGTTTACC
*
88528566 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
88528593 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
88528620 AAATTACCGAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
88528647 AAATTACTAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
88528674 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
88528701 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
88528728 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
88528755 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
88528782 AAAGTACCAAAATA-CCTCTAGTTTGTA
1 AAATTACCAAAATACCCT-TGGTTTGTA
88528809 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
88528836 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* ** *
88528863 GAATTACCAAAATACCCTTTATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
**** * * ***
88528890 AAATTGTTGAAATATCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*** **
88528917 AAATTATTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
88528944 AAATTACCAAAGTACCCTTG
1 AAATTACCAAAATACCCTTG
88528964 ATTTATAGAA
Statistics
Matches: 308, Mismatches: 61, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
26 3 0.01
27 302 0.98
28 3 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:88528903 original size:54 final size:54
Alignment explanation
Indices: 88528566--88528881 Score: 506
Period size: 54 Copynumber: 5.9 Consensus size: 54
88528556 TTAGTTTACC
* *
88528566 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
88528620 AAATTACCGAAATACCCCTAGTTTGTAAAATTACTAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
*
88528674 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
88528728 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
88528782 AAAGTACCAAAATACCTCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
88528836 AAATTATCAAAATACCCCTAGTTTGTAGAATTACCAAAATACCCTT
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTT
88528882 TATTTGTGAA
Statistics
Matches: 239, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 239 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:88529029 original size:27 final size:27
Alignment explanation
Indices: 88528999--88529491 Score: 522
Period size: 27 Copynumber: 18.3 Consensus size: 27
88528989 CGATTTACAA
* *
88528999 AATTACCGAAACACCACTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
88529026 AATTAGCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
**
88529053 AATTATTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
** * * *
88529080 AATTACTAAAATATCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
** * *
88529107 AATTACTAAAATATCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
**
88529134 AATTATTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
88529161 AATTACCGAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
88529188 AATTATCAAAATACCCCTGTAAGGTAT
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
88529215 AATTACTGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * * *
88529242 AATTACCAAAATACCCTTGTAGGGTAT
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
88529269 AATTACTGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
88529296 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
88529323 AATTACTGAAATACCCCTGTAAGGTAA
1 AATTACCGAAATACCCCTGTAAGGTAG
** *
88529350 AATTACCGAAATACCATTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
88529377 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
88529404 AATTACCTAAATACCCTTGT-AGGTTAG
1 AATTACCGAAATACCCCTGTAAGG-TAG
* * ** *
88529431 AAATACTGATTTACCCCTGTAAGATAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
88529458 AATTACCGAGATACCCTCT-TAGGGTAA
1 AATTACCGAAATACCC-CTGTAAGGTAG
88529485 AATTACC
1 AATTACC
88529492 ATTTTGCCCT
Statistics
Matches: 392, Mismatches: 71, Indels: 6
0.84 0.15 0.01
Matches are distributed among these distances:
26 2 0.01
27 386 0.98
28 4 0.01
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAAGGTAG
Found at i:88529057 original size:54 final size:54
Alignment explanation
Indices: 88528999--88529490 Score: 610
Period size: 54 Copynumber: 9.1 Consensus size: 54
88528989 CGATTTACAA
* * * *
88528999 AATTACCGAAACACCACTGTAAGGTAGAATTAGCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAG
* ** *
88529053 AATTATTGAAATACCCCTGTAAGGTAGAATTACTAAAATATCCC-TATAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATA-CCCTTGTAGGGTAG
* * * ** * *
88529107 AATTACTAAAATATCCCTGTAGGGTAGAATTATTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAG
* * * * * * *
88529161 AATTACCGAAATACCCCTGTATGGTAGAATTATCAAAATACCCCTGTAAGGTAT
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAG
* * *
88529215 AATTACTGAAATACCCCTATAAGGTAGAATTACCAAAATACCCTTGTAGGGTAT
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAG
*
88529269 AATTACTGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAG
* *
88529323 AATTACTGAAATACCCCTGTAAGGTAAAATTACCGAAATACCATTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAG
* * * *
88529377 AATTACCGAAATACCCCTGTAGGGTAGAATTACCTAAATACCCTTGTAGGTTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAG
* ** * * *
88529431 AAATACTGATTTACCCCTGTAAGATAGAATTACCGAGATACCCTCT-TAGGGTAA
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCT-TGTAGGGTAG
88529485 AATTAC
1 AATTAC
88529491 CATTTTGCCC
Statistics
Matches: 382, Mismatches: 53, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
53 3 0.01
54 375 0.98
55 4 0.01
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAG
Found at i:88530110 original size:28 final size:28
Alignment explanation
Indices: 88530055--88530131 Score: 86
Period size: 27 Copynumber: 2.8 Consensus size: 28
88530045 ATTCTGTTAA
* *
88530055 GTGGCTTTGCCACATTATCTG-ATTCTG
1 GTGGCTATGCCACAATATCTGTATTCTG
88530082 GTGGCTATGCCACAAATATCTGTA-TCTG
1 GTGGCTATGCCAC-AATATCTGTATTCTG
* * *
88530110 GTGACTCTGTCACAATATCTGT
1 GTGGCTATGCCACAATATCTGT
88530132 TCCGGCAGCA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
27 21 0.49
28 21 0.49
29 1 0.02
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (28 bp):
GTGGCTATGCCACAATATCTGTATTCTG
Found at i:88530298 original size:31 final size:31
Alignment explanation
Indices: 88530263--88530329 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
88530253 TCTGGTTTTG
*
88530263 ATTCTGTTACCTAATACTGATTCTGATTCTA
1 ATTCTGTCACCTAATACTGATTCTGATTCTA
* ** * *
88530294 ATTCTGTCACCTGATTTTGATTTTGATTCTG
1 ATTCTGTCACCTAATACTGATTCTGATTCTA
88530325 ATTCT
1 ATTCT
88530330 AGTTCTGATA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (31 bp):
ATTCTGTCACCTAATACTGATTCTGATTCTA
Found at i:88534268 original size:56 final size:56
Alignment explanation
Indices: 88534177--88534330 Score: 211
Period size: 56 Copynumber: 2.8 Consensus size: 56
88534167 GGTGTCACAG
* *
88534177 TAGGAATCAAATTGCTAAAAGATAATATCCAATAATAATATCCTATAATATCCCAT
1 TAGGAATCAAATTGCTAAAAGATAATATCCAATAATAATATCCTATAACATCCAAT
* * *
88534233 TAGGAATCAAATTGCTAAAAGATCATGTCTC-ATAATAATATCCTATAACATCTAAT
1 TAGGAATCAAATTGCTAAAAGATAATATC-CAATAATAATATCCTATAACATCCAAT
* * * *
88534289 TAGGAATCAAATTGCTAAAAGTTAACATCCCATGATAATATC
1 TAGGAATCAAATTGCTAAAAGATAATATCCAATAATAATATC
88534331 TTAACAACTA
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
55 1 0.01
56 84 0.98
57 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (56 bp):
TAGGAATCAAATTGCTAAAAGATAATATCCAATAATAATATCCTATAACATCCAAT
Found at i:88537407 original size:40 final size:40
Alignment explanation
Indices: 88537363--88537508 Score: 256
Period size: 40 Copynumber: 3.6 Consensus size: 40
88537353 TTGGCTCGGA
*
88537363 TATAACAACCCACACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCACACGAATGCCTTCGGGACTTAACCCGGT
*
88537403 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCACACGAATGCCTTCGGGACTTAACCCGGT
*
88537443 TATAATAACCTACACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCACACGAATGCCTTCGGGACTTAACCCGGT
*
88537483 TATAATAACCCGCACGAATGCCTTCG
1 TATAATAACCCACACGAATGCCTTCG
88537509 ACATATATAT
Statistics
Matches: 100, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 100 1.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (40 bp):
TATAATAACCCACACGAATGCCTTCGGGACTTAACCCGGT
Found at i:88545827 original size:50 final size:50
Alignment explanation
Indices: 88545761--88545861 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
88545751 AATTACATAG
88545761 GAAAAATCCTATATATTTTTCAGTTTACACACCCCCAAACTTAAATCATT
1 GAAAAATCCTATATATTTTTCAGTTTACACACCCCCAAACTTAAATCATT
88545811 GAAAAATCCTATATATTTTTCAGTTTACACACCCCCAAACTTAAATCATT
1 GAAAAATCCTATATATTTTTCAGTTTACACACCCCCAAACTTAAATCATT
88545861 G
1 G
88545862 CTCATCCCGA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.34
Consensus pattern (50 bp):
GAAAAATCCTATATATTTTTCAGTTTACACACCCCCAAACTTAAATCATT
Found at i:88554990 original size:48 final size:48
Alignment explanation
Indices: 88554919--88555014 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
88554909 TGAGAAGGAT
88554919 GATTAAAGGATGATTATTAGTGAAAAATTAATATTTATACCTAGGTTA
1 GATTAAAGGATGATTATTAGTGAAAAATTAATATTTATACCTAGGTTA
*
88554967 GATTAAAGGCTGATTATTAGTGAAAAATTAATATTTATACCTAGGTTA
1 GATTAAAGGATGATTATTAGTGAAAAATTAATATTTATACCTAGGTTA
88555015 ACTAGGCTTG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.38
Consensus pattern (48 bp):
GATTAAAGGATGATTATTAGTGAAAAATTAATATTTATACCTAGGTTA
Found at i:88561700 original size:47 final size:47
Alignment explanation
Indices: 88561550--88562022 Score: 759
Period size: 47 Copynumber: 10.1 Consensus size: 47
88561540 CCCTTCGGGA
* * * * * * *
88561550 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
88561597 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
88561643 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
88561690 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
88561737 CTTATCACCTATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
88561784 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
88561831 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
88561878 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
88561925 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
88561972 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
88562019 CTTA
1 CTTA
88562023 CTATCATTTC
Statistics
Matches: 400, Mismatches: 25, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
46 40 0.10
47 360 0.90
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:88565580 original size:40 final size:38
Alignment explanation
Indices: 88565442--88565580 Score: 127
Period size: 40 Copynumber: 3.5 Consensus size: 38
88565432 CATGATTGCT
* * * *
88565442 CTTCGGGATTTAGCACGGATATATCACTAGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATGTAACTAGCAC-AATGC
* * *
88565481 TCTTCGGAACTTAGCCCGGATTTAGTAACTCGCACCAATGC
1 -CTTCGGGACTTAGCCCGGATAT-GTAACTAGCA-CAATGC
* *
88565522 CTTC-GGATCTTAGTCCGGATATGGTAACTTAGCACAAAGC
1 CTTCGGGA-CTTAGCCCGGATAT-GTAAC-TAGCACAATGC
88565562 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
88565581 CATCATTCAA
Statistics
Matches: 80, Mismatches: 14, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
39 2 0.03
40 58 0.73
41 19 0.24
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (38 bp):
CTTCGGGACTTAGCCCGGATATGTAACTAGCACAATGC
Found at i:88565925 original size:29 final size:29
Alignment explanation
Indices: 88565886--88565964 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
88565876 CTTAATAATC
*
88565886 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
88565916 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
88565945 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
88565965 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:88568168 original size:47 final size:47
Alignment explanation
Indices: 88568018--88568396 Score: 589
Period size: 47 Copynumber: 8.1 Consensus size: 47
88568008 CCCTTCGGGA
* * * * * * *
88568018 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
88568065 CCTGTCACATATATACACTTTCACATTCA-CACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
88568111 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
88568158 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
88568205 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
88568252 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
88568299 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
88568346 CTTATCACATATATACACTTTCGCATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
88568393 CTTA
1 CTTA
88568397 CTATCATTTC
Statistics
Matches: 306, Mismatches: 25, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
46 39 0.13
47 267 0.87
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:88574840 original size:28 final size:28
Alignment explanation
Indices: 88574800--88574891 Score: 125
Period size: 28 Copynumber: 3.3 Consensus size: 28
88574790 ATGACAGAGT
88574800 CACCAG-ATACAGATATTTGTGGCAGTGC
1 CACCAGAAT-CAGATATTTGTGGCAGTGC
* *
88574828 CACCAGAATCAGATATTTGTGGTAGAGC
1 CACCAGAATCAGATATTTGTGGCAGTGC
*
88574856 CACCAGAAACAGATATTTGTGGCA-TAGC
1 CACCAGAATCAGATATTTGTGGCAGT-GC
88574884 CACCAGAA
1 CACCAGAA
88574892 CGCTTCCTCC
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
28 55 0.96
29 2 0.04
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (28 bp):
CACCAGAATCAGATATTTGTGGCAGTGC
Found at i:88575030 original size:26 final size:26
Alignment explanation
Indices: 88574994--88575056 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
88574984 CAAAACTAAC
*
88574994 CCTAGGGGTATAATGGTAATTTTACA
1 CCTAGGGGTATAATGGTAATTTCACA
* *
88575020 CCTAGGGGTATAGTGGTAATTTCATA
1 CCTAGGGGTATAATGGTAATTTCACA
*
88575046 CTTAGGGGTAT
1 CCTAGGGGTAT
88575057 TTTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTATAATGGTAATTTCACA
Found at i:88578317 original size:25 final size:26
Alignment explanation
Indices: 88578289--88578339 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
88578279 ATTGTAAATC
88578289 AGAAAAATATCTTCAA-A-AATTTTCT
1 AGAAAAATATCTT-AAGAGAATTTTCT
* *
88578314 AGAATAATCTCTTAAGAGAATTTTCT
1 AGAAAAATATCTTAAGAGAATTTTCT
88578340 CTCTGCAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 2 0.09
25 12 0.55
26 8 0.36
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.37
Consensus pattern (26 bp):
AGAAAAATATCTTAAGAGAATTTTCT
Found at i:88580232 original size:46 final size:46
Alignment explanation
Indices: 88580165--88580336 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
88580155 TGTAACCCGC
*
88580165 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
88580211 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
88580261 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
88580304 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTT
88580337 TGGATGCTCA
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 59 0.55
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:88580282 original size:93 final size:93
Alignment explanation
Indices: 88580172--88580343 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
88580162 CGCCCATAAG
* *
88580172 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
88580237 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
88580265 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
88580330 ACGAGTTTGGATGC
66 ACGAGTTCGGATGC
88580344 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:88581786 original size:19 final size:19
Alignment explanation
Indices: 88581748--88581787 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
88581738 AAAATATCAT
*
88581748 ATTAATTTTAATTTATTTG
1 ATTAATTTTAATTTACTTG
88581767 ATTAA-TTTAATTGTACTTG
1 ATTAATTTTAATT-TACTTG
88581786 AT
1 AT
88581788 CAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (19 bp):
ATTAATTTTAATTTACTTG
Found at i:88587031 original size:135 final size:135
Alignment explanation
Indices: 88586789--88587059 Score: 533
Period size: 135 Copynumber: 2.0 Consensus size: 135
88586779 GGGAAAAACG
88586789 TATCAAAAGAGTGAAGGAAGAAGGAAGTAGCTCATCCAATCATTAGATAGTAAGTACTTCAAGAA
1 TATCAAAAGAGTGAAGGAAGAAGGAAGTAGCTCATCCAATCATTAGATAGTAAGTACTTCAAGAA
*
88586854 TTTTTTTTTACCTAATTAAAACCTAAGTGAAAACTTATTAAATTGGTTTTGGTAATAAATATGTG
66 TTTTTCTTTACCTAATTAAAACCTAAGTGAAAACTTATTAAATTGGTTTTGGTAATAAATATGTG
88586919 ATTCA
131 ATTCA
88586924 TATCAAAAGAGTGAAGGAAGAAGGAAGTAGCTCATCCAATCATTAGATAGTAAGTACTTCAAGAA
1 TATCAAAAGAGTGAAGGAAGAAGGAAGTAGCTCATCCAATCATTAGATAGTAAGTACTTCAAGAA
88586989 TTTTTCTTTACCTAATTAAAACCTAAGTGAAAACTTATTAAATTGGTTTTGGTAATAAATATGTG
66 TTTTTCTTTACCTAATTAAAACCTAAGTGAAAACTTATTAAATTGGTTTTGGTAATAAATATGTG
88587054 ATTCA
131 ATTCA
88587059 T
1 T
88587060 TATATAAAAA
Statistics
Matches: 135, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
135 135 1.00
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.33
Consensus pattern (135 bp):
TATCAAAAGAGTGAAGGAAGAAGGAAGTAGCTCATCCAATCATTAGATAGTAAGTACTTCAAGAA
TTTTTCTTTACCTAATTAAAACCTAAGTGAAAACTTATTAAATTGGTTTTGGTAATAAATATGTG
ATTCA
Found at i:88587526 original size:23 final size:23
Alignment explanation
Indices: 88587500--88587552 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
88587490 GGTATTTCGA
*
88587500 TGCAAATGATAGTGGCACTTAAG
1 TGCAAATGAAAGTGGCACTTAAG
* *
88587523 TGCAAGTGAAAGTGGCACTTTAG
1 TGCAAATGAAAGTGGCACTTAAG
88587546 TGCAAAT
1 TGCAAAT
88587553 TAGTGATTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.26
Consensus pattern (23 bp):
TGCAAATGAAAGTGGCACTTAAG
Found at i:88593611 original size:68 final size:67
Alignment explanation
Indices: 88593539--88593684 Score: 172
Period size: 67 Copynumber: 2.2 Consensus size: 67
88593529 TCATGTGTAT
* * * *
88593539 AAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCAT
1 AAGAGAGCTAC-AG-CA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCAT
88593601 GTAGAC
62 GTAGAC
* * *
88593607 AAGAGAGCTACAGGATATATGTAGCTAGGTCGCATGCGTGGCTCCAAGTGAAGGACACCATGTAG
1 AAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGTAG
88593672 AC
66 AC
88593674 AAGAGAGCTAC
1 AAGAGAGCTAC
88593685 GAGATAAATT
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 3 0.04
67 27 0.40
68 11 0.16
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.21
Consensus pattern (67 bp):
AAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGTAG
AC
Found at i:88593641 original size:64 final size:64
Alignment explanation
Indices: 88593561--88593744 Score: 187
Period size: 67 Copynumber: 2.8 Consensus size: 64
88593551 AGACATTATG
*
88593561 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC-AGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGA-GATAA
* * * * * *
88593625 ATGTAGCTAGGTCGCATGCGTGGCTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
88593690 AA
63 AA
* * * *
88593692 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
88593745 CGAACTATAT
Statistics
Matches: 98, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 7 0.07
66 18 0.18
67 31 0.32
68 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:88606660 original size:17 final size:16
Alignment explanation
Indices: 88606629--88606671 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
88606619 GGGAAATCGA
*
88606629 AAAAGGAAAGGGAAAG
1 AAAATGAAAGGGAAAG
88606645 AAAATGAAAGGCGAAAG
1 AAAATGAAAGG-GAAAG
*
88606662 AGAATGAAAG
1 AAAATGAAAG
88606672 AAAGAATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.60, C:0.02, G:0.33, T:0.05
Consensus pattern (16 bp):
AAAATGAAAGGGAAAG
Found at i:88614060 original size:22 final size:22
Alignment explanation
Indices: 88614029--88614073 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
88614019 GCTTGTACGG
*
88614029 GTTTAACACTTCTGTGCTCTCT
1 GTTTAACACTTCGGTGCTCTCT
*
88614051 GTTTAGCACTTCGGTGCTCTCT
1 GTTTAACACTTCGGTGCTCTCT
88614073 G
1 G
88614074 GTATGGTGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.11, C:0.27, G:0.20, T:0.42
Consensus pattern (22 bp):
GTTTAACACTTCGGTGCTCTCT
Found at i:88614470 original size:12 final size:12
Alignment explanation
Indices: 88614453--88614481 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
88614443 AGAGGAAAGT
88614453 AACTACGTAAGG
1 AACTACGTAAGG
88614465 AACTACGTAAGG
1 AACTACGTAAGG
88614477 AACTA
1 AACTA
88614482 GTGCTTAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.45, C:0.17, G:0.21, T:0.17
Consensus pattern (12 bp):
AACTACGTAAGG
Found at i:88615512 original size:26 final size:24
Alignment explanation
Indices: 88615471--88615525 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 24
88615461 TGAGTTCAAT
* *
88615471 AGAGCTTACTGTTCATTAGCTCAGAA
1 AGAGCTTAATGATCA-TAGCTC-GAA
*
88615497 TGAGCTTAATGATCATAGCTCGAA
1 AGAGCTTAATGATCATAGCTCGAA
88615521 AGAGC
1 AGAGC
88615526 GAATACGATG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 7 0.28
25 6 0.24
26 12 0.48
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (24 bp):
AGAGCTTAATGATCATAGCTCGAA
Done.