Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 267 of 373
Found at i:90775945 original size:5 final size:5
Alignment explanation
Indices: 90775935--90775959 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
90775925 CTTGAACAAA
90775935 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
90775960 CACATAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:90785752 original size:40 final size:40
Alignment explanation
Indices: 90785661--90785754 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 40
90785651 CCAACTCCGT
* * *
90785661 CCAACCCAACACACC--ATGTGGGGATAAAATCGACCCAC
1 CCAACCCTACACACCAAATATGGGGATAAAATCAACCCAC
* * * *
90785699 CCATCCCTGCACACCAAATATGGGGATAGAATCAACCCAT
1 CCAACCCTACACACCAAATATGGGGATAAAATCAACCCAC
*
90785739 CCAACCTTACACACCA
1 CCAACCCTACACACCA
90785755 TAGAGTACCG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
38 12 0.27
40 32 0.73
ACGTcount: A:0.36, C:0.37, G:0.13, T:0.14
Consensus pattern (40 bp):
CCAACCCTACACACCAAATATGGGGATAAAATCAACCCAC
Found at i:90786142 original size:18 final size:18
Alignment explanation
Indices: 90786103--90786138 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
90786093 CATATGGCCT
*
90786103 GCCCGTGTGGACCTACAC
1 GCCCGTGTGGACCCACAC
90786121 GCCCGTGTGG-CCCACAC
1 GCCCGTGTGGACCCACAC
90786138 G
1 G
90786139 GCCCAAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.14, C:0.42, G:0.31, T:0.14
Consensus pattern (18 bp):
GCCCGTGTGGACCCACAC
Found at i:90795765 original size:27 final size:27
Alignment explanation
Indices: 90795725--90795791 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
90795715 TGCTGTAGCG
* *
90795725 AACTCTGAAAGAATGGTACT-CATGGCA
1 AACTATGAAGGAATGGTA-TGCATGGCA
*
90795752 AACTATGAAGGAATGGTATGCATGGCG
1 AACTATGAAGGAATGGTATGCATGGCA
90795779 AACTATGAAGGAA
1 AACTATGAAGGAA
90795792 ATGCCCTTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 1 0.03
27 35 0.97
ACGTcount: A:0.39, C:0.13, G:0.27, T:0.21
Consensus pattern (27 bp):
AACTATGAAGGAATGGTATGCATGGCA
Found at i:90800309 original size:150 final size:151
Alignment explanation
Indices: 90800079--90800462 Score: 507
Period size: 149 Copynumber: 2.6 Consensus size: 151
90800069 TTAATTTTTT
* * *
90800079 AAAAAAAGAGAAAGTTTAGATTTT-AATAGAT--AAAT-GTTTTTTTT-AGTTATTTTAAAGGAA
1 AAAAAAAGAGAAAGTTTAGATTTTGAA-AAATAAAAATATTTTTTTTTAAGTCATTTTAAAGGAA
* * * *
90800139 AGTTTAAATTTTTAATACAAAGTTTTGA-TTTTTTTCAACTATTTCAAAATAAAAGGTTTAATCT
65 AGTTTAAAATTTTAAAACAAAGTTTTAATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCT
90800203 TTAAGAAAAATAG-TGTTTTAA
130 TTAAGAAAAATAGTTGTTTTAA
*
90800224 AAAAAAATAGAAAGTTTAGATTTTGAAAAATAAAAATATCTTTTTTTTAAGTCATTTTAAAGGAA
1 AAAAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATAT-TTTTTTTTAAGTCATTTTAAAGGAA
* * *
90800289 AATTTAAAATTTTAAGACAAAGTTTTAATTTTTTTTCAATTATTTCAAAATAAAAGCTTTAATCT
65 AGTTTAAAATTTTAAAACAAAGTTTTAATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCT
* *
90800354 TTAAGAAAAATAGTTTTTTTTA
130 TTAAGAAAAATAGTTGTTTTAA
** * * *
90800376 AAAAAGGGAGAAAGTTTAGATTTTGAAAAATAAAAATA--TATTTTTAAGTCATTTGAAAAGAAA
1 AAAAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATATTTTTTTTTAAGTCATTTTAAAGGAAA
* *
90800439 GTCTGAAATTTTAAAACAAAGTTT
66 GTTTAAAATTTTAAAACAAAGTTT
90800463 AGTCTGAAAT
Statistics
Matches: 209, Mismatches: 22, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
145 26 0.12
146 2 0.01
147 4 0.02
149 50 0.24
150 39 0.19
151 47 0.22
152 41 0.20
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (151 bp):
AAAAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATATTTTTTTTTAAGTCATTTTAAAGGAAA
GTTTAAAATTTTAAAACAAAGTTTTAATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTT
TAAGAAAAATAGTTGTTTTAA
Found at i:90800466 original size:25 final size:25
Alignment explanation
Indices: 90800438--90800487 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
90800428 TTGAAAAGAA
90800438 AGTCTGAAATTTTAAAACAAAGTTT
1 AGTCTGAAATTTTAAAACAAAGTTT
90800463 AGTCTGAAATTTTAAAACAAAGTTT
1 AGTCTGAAATTTTAAAACAAAGTTT
90800488 TAATTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (25 bp):
AGTCTGAAATTTTAAAACAAAGTTT
Found at i:90801071 original size:25 final size:24
Alignment explanation
Indices: 90801043--90801089 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
90801033 TCACTTGCAT
90801043 TTATACA-TTATATATTTAATGTTAA
1 TTATACACTT-TAT-TTTAATGTTAA
*
90801068 TTATGCACTTTATTTTAATGTT
1 TTATACACTTTATTTTAATGTT
90801090 TTATATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 9 0.45
26 2 0.10
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (24 bp):
TTATACACTTTATTTTAATGTTAA
Found at i:90801137 original size:21 final size:22
Alignment explanation
Indices: 90801113--90801171 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
90801103 CACTTGTATA
*
90801113 ATTTTTATTTATTCTT-ATTTC-
1 ATTTTTATTTATT-TTAATGTCT
90801134 ATTTTTATTTTATTTTAATGTCT
1 ATTTTTA-TTTATTTTAATGTCT
*
90801157 ATTTATATTTATTTT
1 ATTTTTATTTATTTT
90801172 TTTTACACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
21 9 0.27
22 18 0.55
23 6 0.18
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.71
Consensus pattern (22 bp):
ATTTTTATTTATTTTAATGTCT
Found at i:90801150 original size:27 final size:26
Alignment explanation
Indices: 90801115--90801176 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
90801105 CTTGTATAAT
*
90801115 TTTTA-TTTAT-TCTTATTTCATTTTTA
1 TTTTATTTTATGTC-TATTT-ATATTTA
90801141 TTTTATTTTAATGTCTATTTATATTTA
1 TTTTATTTT-ATGTCTATTTATATTTA
90801168 TTTT-TTTTA
1 TTTTATTTTA
90801177 CACATTCCCC
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
25 1 0.03
26 9 0.28
27 13 0.41
28 7 0.22
29 2 0.06
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.73
Consensus pattern (26 bp):
TTTTATTTTATGTCTATTTATATTTA
Found at i:90803927 original size:41 final size:41
Alignment explanation
Indices: 90803848--90803927 Score: 99
Period size: 41 Copynumber: 2.0 Consensus size: 41
90803838 GAGAGGTCAA
* * **
90803848 ATGCCCGTGTAAAGATAGGCACACGGTCGTGTGGCTAAGAC
1 ATGCCCGTGTAAAGAGAAGCACACGGTCGTGTAACTAAGAC
*
90803889 ATGCCCGTGTGAAGAGAAGCACACGG-CTGTGTAACTAAG
1 ATGCCCGTGTAAAGAGAAGCACACGGTC-GTGTAACTAAG
90803928 GCACACACCC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
40 1 0.03
41 32 0.97
ACGTcount: A:0.29, C:0.21, G:0.31, T:0.19
Consensus pattern (41 bp):
ATGCCCGTGTAAAGAGAAGCACACGGTCGTGTAACTAAGAC
Found at i:90806234 original size:13 final size:13
Alignment explanation
Indices: 90806218--90806248 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
90806208 ACCGAATAAC
*
90806218 AAAATAGAAACTA
1 AAAATAAAAACTA
90806231 AAAATAAAAACTA
1 AAAATAAAAACTA
90806244 AAAAT
1 AAAAT
90806249 TTATTTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.16
Consensus pattern (13 bp):
AAAATAAAAACTA
Found at i:90813550 original size:22 final size:22
Alignment explanation
Indices: 90813522--90813565 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
90813512 TCTAGATGTA
90813522 GCTAAATACTCAGAGTGGGTGG
1 GCTAAATACTCAGAGTGGGTGG
90813544 GCTAAATACTCAGAGTGGGTGG
1 GCTAAATACTCAGAGTGGGTGG
90813566 CAAATATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.36, T:0.23
Consensus pattern (22 bp):
GCTAAATACTCAGAGTGGGTGG
Found at i:90818002 original size:79 final size:81
Alignment explanation
Indices: 90817866--90818050 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
90817856 TTGAATGATG
* *
90817866 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
90817930 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
90817945 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
90818007 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
90818025 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
90818051 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:90818064 original size:40 final size:40
Alignment explanation
Indices: 90817867--90818050 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
90817857 TGAATGATGT
* * * *
90817867 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
90817907 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
90817947 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
90817985 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
90818026 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
90818051 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:90818072 original size:79 final size:79
Alignment explanation
Indices: 90817919--90818073 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
90817909 GGACTAAGAT
* * **
90817919 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
90817984 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
90817998 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
90818061 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
90818074 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.59
80 25 0.38
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:90820112 original size:13 final size:13
Alignment explanation
Indices: 90820094--90820118 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
90820084 AATCACAAAT
90820094 AAATACACATATC
1 AAATACACATATC
90820107 AAATACACATAT
1 AAATACACATAT
90820119 TTTTTTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATACACATATC
Found at i:90828971 original size:24 final size:24
Alignment explanation
Indices: 90828939--90828995 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
90828929 AAGAGCTGTA
* *
90828939 ATCGGGAAGTTCACAAAGGACCAT
1 ATCGAGAAGTTCACAAAGAACCAT
90828963 ATCGAGAAGTTCACAAAGAACCAT
1 ATCGAGAAGTTCACAAAGAACCAT
*
90828987 ATTGAGAAG
1 ATCGAGAAG
90828996 CACAGAATAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.42, C:0.18, G:0.23, T:0.18
Consensus pattern (24 bp):
ATCGAGAAGTTCACAAAGAACCAT
Found at i:90832372 original size:21 final size:20
Alignment explanation
Indices: 90832340--90832379 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
90832330 CATGTATTTT
90832340 AATGATTTATGATAGATTATG
1 AATGATTTATGATAG-TTATG
90832361 AATG-TTTGATGATAGTTAT
1 AATGATTT-ATGATAGTTAT
90832380 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (20 bp):
AATGATTTATGATAGTTATG
Found at i:90837306 original size:42 final size:42
Alignment explanation
Indices: 90837193--90837352 Score: 194
Period size: 42 Copynumber: 3.8 Consensus size: 42
90837183 GTACTAATGT
* * * *
90837193 CATATCCCAGATATGGTCCTACATGTAATCTCGTATCGATTC
1 CATATCCCAGATATGGTCTTACATGAAATCTCATATCGATGC
* * *
90837235 CAATAGCCCAGCTATGGTCTTACACGAAATCTCATATCGATGC
1 C-ATATCCCAGATATGGTCTTACATGAAATCTCATATCGATGC
* ** *
90837278 CATATCCTAGATATGGTCTTACATGAAATCTCATATAAATGT
1 CATATCCCAGATATGGTCTTACATGAAATCTCATATCGATGC
* *
90837320 CATATCCCAGATATGGTCTTACGTGTAATCTCA
1 CATATCCCAGATATGGTCTTACATGAAATCTCA
90837353 GTAACCCTAA
Statistics
Matches: 100, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 65 0.65
43 35 0.35
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACATGAAATCTCATATCGATGC
Found at i:90843378 original size:21 final size:20
Alignment explanation
Indices: 90843354--90843393 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
90843344 CACGTATTTT
90843354 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
90843375 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
90843394 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:90843401 original size:20 final size:21
Alignment explanation
Indices: 90843359--90843401 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
90843349 ATTTTAATGA
*
90843359 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
90843380 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
90843400 TT
1 TT
90843402 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:90846653 original size:39 final size:40
Alignment explanation
Indices: 90846549--90846733 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
90846539 TTGAATGATG
* * *
90846549 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
90846588 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
90846629 TCCGGGCTAAG-CCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
90846668 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
90846707 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
90846734 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:90846687 original size:79 final size:81
Alignment explanation
Indices: 90846549--90846733 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
90846539 TTGAATGATG
* *
90846549 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
90846613 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
90846628 TTCCGGGCTAAG-CCCAAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
90846690 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
90846708 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
90846734 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.63
80 32 0.36
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:90846755 original size:79 final size:79
Alignment explanation
Indices: 90846602--90846766 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
90846592 GGACTAAGAT
* * **
90846602 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCAAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAA
*
90846667 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
90846681 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTTGAACGAGTTA-C
* *
90846744 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
90846760 CCGAAGG
1 CCGAAGG
90846767 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:90850311 original size:17 final size:17
Alignment explanation
Indices: 90850253--90850311 Score: 59
Period size: 17 Copynumber: 3.5 Consensus size: 17
90850243 TCTTATATCG
*
90850253 AGAAAAAAAGA-AAAAAA
1 AGAAAAAAA-ACAATAAA
*
90850270 AG-ACAAAAACAATAAA
1 AGAAAAAAAACAATAAA
* *
90850286 ACAATAAAAACAATAAA
1 AGAAAAAAAACAATAAA
90850303 AGAAAAAAA
1 AGAAAAAAA
90850312 TAAAGAGAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 1 0.03
16 11 0.32
17 22 0.65
ACGTcount: A:0.81, C:0.07, G:0.07, T:0.05
Consensus pattern (17 bp):
AGAAAAAAAACAATAAA
Found at i:90850778 original size:42 final size:42
Alignment explanation
Indices: 90850715--90851091 Score: 447
Period size: 42 Copynumber: 9.0 Consensus size: 42
90850705 AAGGAAAACA
* * *
90850715 TTCATTTCATTTAGA-AGCCCAAGTGTGGAGGTCCATCTACTT
1 TTCATTGCATTTAGAGA-CCCAGGTGTGGAGGTCCATTTACTT
* * *
90850757 TTCATTGCATTTAGACACCCAAGTGTGGAGG-CTCGTTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTC-CATTTACTT
* *
90850799 TTCATTGCATTTAGAGACCTAGGTGTGGAGGTCCATTTAATT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * * *
90850841 TTCATTGCATTCAGAGGCCCAGGTATGGAGGTCCATTTGCTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* *
90850883 TTCATTGCATTT--AGACTCAGGTGTGGAGGTCCATTTACAT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* *
90850923 TTCATTGCATTTAAAGACCCAAGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * * * *
90850965 TTCATTACATTTAGAGGCCCAGGTATGGAGGTCAATTCACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * *
90851007 TTCATTGCATTTAAAGACCTAGGTGTGGAGGTCCATTAACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * * * *
90851049 TTCATTTCATTTAGTGACCCAAGTATGGAGGTCCGTTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
90851091 T
1 T
90851092 ACTAGTTTAC
Statistics
Matches: 285, Mismatches: 45, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
40 35 0.12
41 1 0.00
42 247 0.87
43 2 0.01
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.36
Consensus pattern (42 bp):
TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
Found at i:90850930 original size:166 final size:166
Alignment explanation
Indices: 90850737--90851062 Score: 456
Period size: 166 Copynumber: 2.0 Consensus size: 166
90850727 AGAAGCCCAA
* * *
90850737 GTGTGGAGGTCCATCTACTTTTCATTGCATTTAGACACCCAAGTGTGGAGG-CTCGTTTACTTTT
1 GTGTGGAGGTCCATCTACATTTCATTGCATTTAAACACCCAAGTGTGGAGGTC-CATTTACTTTT
* * * * * * *
90850801 CATTGCATTTAGAGACCTAGGTGTGGAGGTCCATTTAATTTTCATTGCATTCAGAGGCCCAGGTA
65 CATTACATTTAGAGACCCAGGTATGGAGGTCAATTCAATTTTCATTGCATTCAAAGACCCAGGTA
**
90850866 TGGAGGTCCATTTGCTTTTCATTGCATTTAGACTCAG
130 TGGAGGTCCATTAACTTTTCATTGCATTTAGACTCAG
* *
90850903 GTGTGGAGGTCCATTTACATTTCATTGCATTTAAAGACCCAAGTGTGGAGGTCCATTTACTTTTC
1 GTGTGGAGGTCCATCTACATTTCATTGCATTTAAACACCCAAGTGTGGAGGTCCATTTACTTTTC
* * * * *
90850968 ATTACATTTAGAGGCCCAGGTATGGAGGTCAATTCACTTTTCATTGCATTTAAAGACCTAGGTGT
66 ATTACATTTAGAGACCCAGGTATGGAGGTCAATTCAATTTTCATTGCATTCAAAGACCCAGGTAT
*
90851033 GGAGGTCCATTAACTTTTCATTTCATTTAG
131 GGAGGTCCATTAACTTTTCATTGCATTTAG
90851063 TGACCCAAGT
Statistics
Matches: 139, Mismatches: 20, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
166 138 0.99
167 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (166 bp):
GTGTGGAGGTCCATCTACATTTCATTGCATTTAAACACCCAAGTGTGGAGGTCCATTTACTTTTC
ATTACATTTAGAGACCCAGGTATGGAGGTCAATTCAATTTTCATTGCATTCAAAGACCCAGGTAT
GGAGGTCCATTAACTTTTCATTGCATTTAGACTCAG
Found at i:90852234 original size:155 final size:154
Alignment explanation
Indices: 90851833--90852597 Score: 956
Period size: 155 Copynumber: 5.0 Consensus size: 154
90851823 AAAGTTTTTA
* * *
90851833 TTTTTTT-AAAAAA-GAGAAAGTTTAGATTTT-AACAAATAAGAAT-T-TTTTTTTAGTTATTTT
1 TTTTTTTAAAAAAAGGAGAAAGTTTAGATTTTGAA-AAATAAAAATCTGTTTTTTAAGTCATTTT
* *
90851893 AAAAGAAAGTTTAAATTTTTAAAACAAAGTTTTGATTATTTTTTCAACTATTTCAAAGA-AAAAG
65 AAAAGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTCAAA-ATAAAAG
*
90851957 TTTTAATCTTTAAGAAAAATGA--TT
129 TTTTAATCTTTAAGAAAAATAATGTT
* * * * *
90851981 TTTTTTTAAAAAAAAGAAAAAGTTTAGATTTTGAAAAATTAAAATCCGTTTTTTTTAGTCATTTT
1 TTTTTTTAAAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAAAATCTG-TTTTTTAAGTCATTTT
* * *
90852046 AAAGGAAAGTTTAAAATTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTCAAAATAAAAGC
65 AAAAGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTCAAAATAAAAGT
90852111 TTTAATCTTTAAGAAAAATAATGTT
130 TTTAATCTTTAAGAAAAATAATGTT
*
90852136 TTTTTTTAAAAAAAGGGAGAAAG-TTAGATTTTAAAAAATAAAAAATCTGTTTTTTAAGTCATTT
1 TTTTTTTAAAAAAA-GGAGAAAGTTTAGATTTTGAAAAAT-AAAAATCTGTTTTTTAAGTCATTT
* * *
90852200 TAAATGAAAGTTTAAATTTTTAAAATAAAATTTTGA-TTTTTTTTCAACTATTTCAAAGTAAAAA
64 TAAAAGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTCAAAAT-AAAA
** *
90852264 ACTTTAATCTTTAAGAAAAATATTAGTT
128 GTTTTAATCTTTAAGAAAAATAAT-GTT
* * *
90852292 TTTTTTCGAAAAAAAATGAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTT-AGTCATTT
1 TTTTTT--TAAAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAAAATCTGTTTTTTAAGTCATTT
* * *
90852356 TAAAAGAAAGTTTAACTTTTTAAAACAAAGTTTTGATTTTTTTTTCAACTATTTTAAAATAAAAG
64 TAAAAGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTCAAAATAAAAG
*
90852421 TTTTAATCTTTAAGAAAAAT-A-GTG
129 TTTTAATCTTTAAGAAAAATAATGTT
* * *
90852445 TTTTTTT--AAAAGGGAGAAAGTTTCGATTTTGAAAAATAAAAATCTATTTTTTAAGTCATTTTA
1 TTTTTTTAAAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAAAATCTGTTTTTTAAGTCATTTTA
* * * * *
90852508 TAGGAAAGTCTAAATTTTTAAAATAAAGTTTTGA-TTTTTTTT-AACTATTT-ATAAT-AAGGTT
66 AAAGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTCAAAATAAAAGTT
* * * *
90852569 TTGATTTTTAAGAAAAGTAATGAT
131 TTAATCTTTAAGAAAAATAATGTT
90852593 TTTTT
1 TTTTT
90852598 CTAAGGAAAA
Statistics
Matches: 542, Mismatches: 55, Indels: 40
0.85 0.09 0.06
Matches are distributed among these distances:
146 20 0.04
147 5 0.01
148 21 0.04
149 54 0.10
150 63 0.12
151 2 0.00
152 1 0.00
153 101 0.19
154 22 0.04
155 104 0.19
156 85 0.16
157 42 0.08
158 22 0.04
ACGTcount: A:0.42, C:0.04, G:0.10, T:0.44
Consensus pattern (154 bp):
TTTTTTTAAAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAAAATCTGTTTTTTAAGTCATTTTA
AAAGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTCAAAATAAAAGTT
TTAATCTTTAAGAAAAATAATGTT
Found at i:90853120 original size:25 final size:24
Alignment explanation
Indices: 90853092--90853138 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
90853082 TCACTTGCAT
90853092 TTATACA-TTATATATTTAATGTTAA
1 TTATACACTT-TAT-TTTAATGTTAA
*
90853117 TTATGCACTTTATTTTAATGTT
1 TTATACACTTTATTTTAATGTT
90853139 TTATATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 9 0.45
26 2 0.10
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (24 bp):
TTATACACTTTATTTTAATGTTAA
Found at i:90853196 original size:10 final size:10
Alignment explanation
Indices: 90853162--90853196 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
90853152 CACTTGTATA
90853162 ATTTTTATTT
1 ATTTTTATTT
*
90853172 ATTCTTATTT
1 ATTTTTATTT
90853182 CATTTTTATTT
1 -ATTTTTATTT
90853193 ATTT
1 ATTT
90853197 ACTGTCTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.74
Consensus pattern (10 bp):
ATTTTTATTT
Found at i:90859096 original size:46 final size:44
Alignment explanation
Indices: 90859029--90859205 Score: 196
Period size: 46 Copynumber: 3.9 Consensus size: 44
90859019 TGTAACCTGC
* *
90859029 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGAGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGA-TTCGCAT
* *
90859075 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATTCGC-A--T
* * *
90859121 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATTCGCAT
90859168 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
90859206 GCCCAAATAT
Statistics
Matches: 110, Mismatches: 12, Indels: 20
0.77 0.08 0.14
Matches are distributed among these distances:
43 1 0.01
44 5 0.05
45 5 0.05
46 62 0.56
47 31 0.28
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATTCGCAT
Found at i:90859195 original size:93 final size:93
Alignment explanation
Indices: 90859036--90859208 Score: 303
Period size: 93 Copynumber: 1.9 Consensus size: 93
90859026 TGCCCATAAG
* *
90859036 CGAACTCGGACTCAACTCAACGAGCTCAGGAGTTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGGAATTCGCATCCATAAGTGAACTCGGACTCAACTCA
90859101 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
*
90859129 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCAGGA-ATTCGCATCCATAAGTGAACTCGGACTCAACTC
90859193 AACGAGTTCGGATGCC
65 AACGAGTTCGGATGCC
90859209 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
92 3 0.04
93 73 0.96
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGGAATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:90862542 original size:24 final size:24
Alignment explanation
Indices: 90862488--90862615 Score: 149
Period size: 24 Copynumber: 5.4 Consensus size: 24
90862478 GAGACATGGC
*
90862488 CAGTAAGCTCT-TCATGAGCTGATAA
1 CAGTAAGCTCTAT--TGAGCTGAAAA
90862513 CAGTAAGCTCTATTGAGCTGAAAA
1 CAGTAAGCTCTATTGAGCTGAAAA
*
90862537 CGGTAAGCTCTATTGAGCTGAAAA
1 CAGTAAGCTCTATTGAGCTGAAAA
* *
90862561 CGGTAAGCTCTATTGAGTTG-AAA
1 CAGTAAGCTCTATTGAGCTGAAAA
*
90862584 -AGTAAGCTCT-TCTGACCT-AAAA
1 CAGTAAGCTCTAT-TGAGCTGAAAA
90862606 CAGTAAGCTC
1 CAGTAAGCTC
90862616 ATACGAGCTA
Statistics
Matches: 93, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
21 1 0.01
22 16 0.17
23 12 0.13
24 52 0.56
25 11 0.12
26 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (24 bp):
CAGTAAGCTCTATTGAGCTGAAAA
Found at i:90862568 original size:48 final size:46
Alignment explanation
Indices: 90862489--90862615 Score: 168
Period size: 48 Copynumber: 2.7 Consensus size: 46
90862479 AGACATGGCC
*
90862489 AGTAAGCTCTTCATGAGCTGATAACAGTAAGCTCTATTGAGCTGAAA
1 AGTAAGCTCTTC-TGAGCTGAAAACAGTAAGCTCTATTGAGCTGAAA
* *
90862536 ACGGTAAGCTCTAT-TGAGCTGAAAACGGTAAGCTCTATTGAGTTGAAA
1 A--GTAAGCTCT-TCTGAGCTGAAAACAGTAAGCTCTATTGAGCTGAAA
*
90862584 AGTAAGCTCTTCTGACCT-AAAACAGTAAGCTC
1 AGTAAGCTCTTCTGAGCTGAAAACAGTAAGCTC
90862616 ATACGAGCTA
Statistics
Matches: 71, Mismatches: 5, Indels: 10
0.83 0.06 0.12
Matches are distributed among these distances:
45 14 0.20
46 14 0.20
47 1 0.01
48 32 0.45
49 9 0.13
50 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (46 bp):
AGTAAGCTCTTCTGAGCTGAAAACAGTAAGCTCTATTGAGCTGAAA
Found at i:90870214 original size:20 final size:20
Alignment explanation
Indices: 90870189--90870274 Score: 63
Period size: 20 Copynumber: 4.3 Consensus size: 20
90870179 TATTTCATAA
90870189 TAATTTTATGAATAATTAAT
1 TAATTTTATGAATAATTAAT
* *
90870209 TAATTTT-TTATTAATTAAAT
1 TAATTTTATGAATAATT-AAT
* * * *
90870229 AAATAATTAT-ATTTCA-TAA-
1 TAAT-TTTATGA-ATAATTAAT
90870248 TAATTTTATGAATAATTAAT
1 TAATTTTATGAATAATTAAT
90870268 TAATTTT
1 TAATTTT
90870275 CGATTAATTA
Statistics
Matches: 50, Mismatches: 9, Indels: 14
0.68 0.12 0.19
Matches are distributed among these distances:
18 6 0.12
19 14 0.28
20 22 0.44
21 4 0.08
22 4 0.08
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.52
Consensus pattern (20 bp):
TAATTTTATGAATAATTAAT
Found at i:90870362 original size:178 final size:177
Alignment explanation
Indices: 90870058--90870756 Score: 1096
Period size: 178 Copynumber: 3.9 Consensus size: 177
90870048 AAAAGTTGGG
* * * * *
90870058 TCATATTTCATAATAATTTAACGAATAATTAATTAATTTCCGATTAATTATATAAATAATCATAT
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCACAT
90870123 TTCATAATAATT-TAACGAATAATTAATTAA-TTTCTAATTAATTAAATAAATAATCATATTTCA
66 TTCATAATAATTCT-ACGAATAATTAATTAATTTTC-AATTAATTAAATAAATAATCATATTTCA
*
90870186 TAATAATTTTATGAATAATTAATTAATTTTTTATTAATTAAATAAATAA
129 TAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
*
90870235 TTATATTTCATAATAATTTTATGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCACAT
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCACA-
*
90870300 TTTTATAATAATTCTACGAATAATTAATTAATTTTCAATTAATTAAATAAATAATCATATTTCAT
65 TTTCATAATAATTCTACGAATAATTAATTAATTTTCAATTAATTAAATAAATAATCATATTTCAT
** *
90870365 AATAATTTTACAAATAATTAATTAATTTTCGATTAATTAAATAAATAA
130 AATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* *
90870413 TCATATTTCATAATAATTTTATGAACAATTAATTAATTTTTGATTAATTAAATAAATAATCACAT
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCACA-
* * *
90870478 TTTTATAATAATTCTACGAATAATTAATTAATTGTCGATTAATTAAATAAATAATCATATTTCAT
65 TTTCATAATAATTCTACGAATAATTAATTAATTTTCAATTAATTAAATAAATAATCATATTTCAT
90870543 AATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
130 AATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* * * *
90870591 TCATATTTCATAATAGTTTTAAGAATAATTAATTAATTTTTGATTAATTAAATAAATAATCATAT
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCACAT
* ** * *
90870656 TTCATAATAATTCTATGAATAATTAATTAATTTTTGATTAATTAATTAATTAATCATATTTCATA
66 TTCATAATAATTCTACGAATAATTAATTAATTTTCAATTAATTAAATAAATAATCATATTTCATA
* **
90870721 ATAATTCTATGAATAATTAATTAATTTGAGATTAAT
131 ATAATTTTATGAATAATTAATTAATTTTTGATTAAT
90870757 CATTCATTTA
Statistics
Matches: 487, Mismatches: 32, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
177 151 0.31
178 331 0.68
179 5 0.01
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (177 bp):
TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCACAT
TTCATAATAATTCTACGAATAATTAATTAATTTTCAATTAATTAAATAAATAATCATATTTCATA
ATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
Found at i:90870391 original size:237 final size:234
Alignment explanation
Indices: 90870062--90870756 Score: 1086
Period size: 237 Copynumber: 2.9 Consensus size: 234
90870052 GTTGGGTCAT
* *
90870062 ATTTCATAATAATTTAACGAATAATTAATTAATTTCCGATTAATTATATAAATAATCATATTTCA
1 ATTTCATAATAATTT-ACGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCATATTTCA
* * *
90870127 TAATAATTTAACGAATAATTAATTAATTTCTAATTAATTAAATAAATAATCATATTTCATAATAA
65 TAATAATTTTACAAATAATTAATTAATTT-TGATTAATTAAATAAATAATCATATTTCATAATAA
* * *
90870192 TTTTATGAATAATTAATTAATTTTTTATTAATTAAATAAATAATTATATTTCATAATAATTTTAT
129 TTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAATCATATTTCATAATAATTCTAT
90870257 GAATAATTAATTAATTTTCGATTAATTAAATAAATAATCAC
194 GAATAATTAATTAATTTTCGATTAATTAAATAAATAATCAC
* *
90870298 ATTTTTATAATAATTCTACGAATAATTAATTAATTTTCAATTAATTAAATAAATAATCATATTTC
1 A-TTTCATAATAATT-TACGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCATATTTC
90870363 ATAATAATTTTACAAATAATTAATTAATTTTCGATTAATTAAATAAATAATCATATTTCATAATA
64 ATAATAATTTTACAAATAATTAATTAATTTT-GATTAATTAAATAAATAATCATATTTCATAATA
* * *
90870428 ATTTTATGAACAATTAATTAATTTTTGATTAATTAAATAAATAATCACATTTTTATAATAATTCT
128 ATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAATCATA-TTTCATAATAATTCT
* * *
90870493 ACGAATAATTAATTAATTGTCGATTAATTAAATAAATAATCAT
192 ATGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCAC
* *
90870536 ATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAATCATATTTCA
1 ATTTCATAATAA-TTTACGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCATATTTCA
*
90870601 TAATAGTTTTA-AGAATAATTAATTAATTTTTGATTAATTAAATAAATAATCATATTTCATAATA
65 TAATAATTTTACA-AATAATTAATTAA-TTTTGATTAATTAAATAAATAATCATATTTCATAATA
* * *
90870665 ATTCTATGAATAATTAATTAATTTTTGATTAATTAATTAATTAATCATATTTCATAATAATTCTA
128 ATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAATCATATTTCATAATAATTCTA
**
90870730 TGAATAATTAATTAATTTGAGATTAAT
193 TGAATAATTAATTAATTTTCGATTAAT
90870757 CATTCATTTA
Statistics
Matches: 421, Mismatches: 31, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
236 41 0.10
237 319 0.76
238 61 0.14
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (234 bp):
ATTTCATAATAATTTACGAATAATTAATTAATTTTCGATTAATTAAATAAATAATCATATTTCAT
AATAATTTTACAAATAATTAATTAATTTTGATTAATTAAATAAATAATCATATTTCATAATAATT
TTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAATCATATTTCATAATAATTCTATGA
ATAATTAATTAATTTTCGATTAATTAAATAAATAATCAC
Found at i:90870768 original size:59 final size:59
Alignment explanation
Indices: 90870058--90870756 Score: 1056
Period size: 59 Copynumber: 11.8 Consensus size: 59
90870048 AAAAGTTGGG
* * ** *
90870058 TCATATTTCATAATAATTTAACGAATAATTAATTAATTTCCGATTAATTATATAAATAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* * * *
90870117 TCATATTTCATAATAATTTAACGAATAATTAATTAATTTCTAATTAATTAAATAAATAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
*
90870176 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTTATTAATTAAATAAATAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* *
90870235 TTATATTTCATAATAATTTTATGAATAATTAATTAATTTTCGATTAATTAAATAAATAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* * * * **
90870294 TCACATTTTTATAATAATTCTACGAATAATTAATTAATTTTCAATTAATTAAATAAATAA
1 TCATA-TTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
** *
90870354 TCATATTTCATAATAATTTTACAAATAATTAATTAATTTTCGATTAATTAAATAAATAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
*
90870413 TCATATTTCATAATAATTTTATGAACAATTAATTAATTTTTGATTAATTAAATAAATAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* * * * * *
90870472 TCACATTTTTATAATAATTCTACGAATAATTAATTAATTGTCGATTAATTAAATAAATAA
1 TCATA-TTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
90870532 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* *
90870591 TCATATTTCATAATAGTTTTAAGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* * *
90870650 TCATATTTCATAATAATTCTATGAATAATTAATTAATTTTTGATTAATTAATTAATTAA
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
* **
90870709 TCATATTTCATAATAATTCTATGAATAATTAATTAATTTGAGATTAAT
1 TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAAT
90870757 CATTCATTTA
Statistics
Matches: 591, Mismatches: 47, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
59 485 0.82
60 106 0.18
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (59 bp):
TCATATTTCATAATAATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
Found at i:90877867 original size:27 final size:26
Alignment explanation
Indices: 90877837--90877973 Score: 105
Period size: 27 Copynumber: 5.1 Consensus size: 26
90877827 AAAGAGAAAT
90877837 TACCCCTAATTTGTAAAATTACCAAAA
1 TACCCCT-ATTTGTAAAATTACCAAAA
* * **
90877864 TACCCTTGA-TTGTGAAATTACTGAAA
1 TACCCCT-ATTTGTAAAATTACCAAAA
90877890 TACCCTCTATTTGTAAAATTACCAAAA
1 TACCC-CTATTTGTAAAATTACCAAAA
* * * *
90877917 TACCCCCGATTTGTGATATTATCAAAA
1 TA-CCCCTATTTGTAAAATTACCAAAA
* * * * *
90877944 TGCCCTTGTAATGTAAAATTACCGAAA
1 TACCCCTAT-TTGTAAAATTACCAAAA
90877971 TAC
1 TAC
90877974 TCTTGTAGTG
Statistics
Matches: 83, Mismatches: 23, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
26 24 0.29
27 56 0.67
28 3 0.04
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.32
Consensus pattern (26 bp):
TACCCCTATTTGTAAAATTACCAAAA
Found at i:90877964 original size:54 final size:53
Alignment explanation
Indices: 90877848--90877973 Score: 139
Period size: 54 Copynumber: 2.4 Consensus size: 53
90877838 ACCCCTAATT
** * *
90877848 TGTAAAATTACCAAAATACCCTTGATTGTGAAATTACTGAAATACCCTCTATT
1 TGTAAAATTACCAAAATACCCCCGATTGTGAAATTACTAAAATACCCTCTATA
* * *
90877901 TGTAAAATTACCAAAATACCCCCGATTTGTGATATTA-TCAAAATGCCCT-TGTAA
1 TGTAAAATTACCAAAATACCCCCGA-TTGTGAAATTACT-AAAATACCCTCTAT-A
*
90877955 TGTAAAATTACCGAAATAC
1 TGTAAAATTACCAAAATAC
90877974 TCTTGTAGTG
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
53 26 0.42
54 36 0.58
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (53 bp):
TGTAAAATTACCAAAATACCCCCGATTGTGAAATTACTAAAATACCCTCTATA
Found at i:90877978 original size:27 final size:27
Alignment explanation
Indices: 90877941--90878019 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
90877931 GATATTATCA
* * *
90877941 AAATGCCCTTGTAATGTAAAATTACCG
1 AAATACCCTTGTAGTGTAAAATGACCG
*
90877968 AAATACTCTTGTAGTGTAAAATGACCG
1 AAATACCCTTGTAGTGTAAAATGACCG
* *
90877995 ACATACCCTTGTAGGGTAAAATGAC
1 AAATACCCTTGTAGTGTAAAATGAC
90878020 TGATTTGCCC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (27 bp):
AAATACCCTTGTAGTGTAAAATGACCG
Found at i:90881601 original size:21 final size:21
Alignment explanation
Indices: 90881575--90881616 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
90881565 ATATCATATT
*
90881575 TTTTAGCGGCGTTTTTATGAG
1 TTTTAGCGGCATTTTTATGAG
* *
90881596 TTTTAGTGGTATTTTTATGAG
1 TTTTAGCGGCATTTTTATGAG
90881617 AAGCACTCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.05, G:0.26, T:0.52
Consensus pattern (21 bp):
TTTTAGCGGCATTTTTATGAG
Found at i:90897579 original size:27 final size:27
Alignment explanation
Indices: 90897423--90897843 Score: 404
Period size: 27 Copynumber: 15.7 Consensus size: 27
90897413 TACCCTATAG
* * * *
90897423 GGGTATGTCGGTCATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* * *
90897450 GGGTATTTTGGTAATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* *
90897477 GGGTATTTCGATAATTTTACAAAT-TA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
90897503 GGGGTGTTTCGATAATATTACAAATCGA
1 -GGGTATTTCGGTAATTTTACAAATCGA
*
90897531 GGGTATTTCGGTAATTTTACAAATAGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
90897558 GGGTATTTTGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * *
90897585 GGGTGTTTCAGTACTTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * * *
90897612 GGGTGTTTCAGTCATTTCACAAAGT-GG
1 GGGTATTTCGGTAATTTTACAAA-TCGA
* * *
90897639 GGGTATTTCTGTAATTTCACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
90897666 GGGTATTTCAGTAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
90897692 GGGTATTTTGGTAATTTTACAAATCGG
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
90897719 GGGTATTTCGATAATTTTACAAATCGG
1 GGGTATTTCGGTAATTTTACAAATCGA
*
90897746 GGGTATTTCGTTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * ** * *
90897773 TGGTGTTTCAATAATTTCACAAATCGG
1 GGGTATTTCGGTAATTTTACAAATCGA
90897800 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
90897827 -GGTATTTCAGTAATTTT
1 GGGTATTTCGGTAATTTT
90897844 CTCTTTATTA
Statistics
Matches: 335, Mismatches: 53, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
26 40 0.12
27 291 0.87
28 4 0.01
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:90898192 original size:28 final size:28
Alignment explanation
Indices: 90898156--90898262 Score: 178
Period size: 28 Copynumber: 3.8 Consensus size: 28
90898146 CTCAATCTCG
* *
90898156 TTCACATGGCCCATCAAGCCCAATCACA
1 TTCATATGGCCCATCAGGCCCAATCACA
90898184 TTCATATGGCCCATCAGGCCCAATCACA
1 TTCATATGGCCCATCAGGCCCAATCACA
90898212 TTCATATGGCCCATCAGGCCCAATCACA
1 TTCATATGGCCCATCAGGCCCAATCACA
* *
90898240 TTCATATGGCCTATTAGGCCCAA
1 TTCATATGGCCCATCAGGCCCAA
90898263 CTACTTCCCA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 75 1.00
ACGTcount: A:0.29, C:0.35, G:0.14, T:0.22
Consensus pattern (28 bp):
TTCATATGGCCCATCAGGCCCAATCACA
Found at i:90901421 original size:38 final size:38
Alignment explanation
Indices: 90901378--90901453 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
90901368 TTCATCCTTT
* *
90901378 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCAAAAATTCTAAGGAAGAAGGAA
90901416 TTCATTTCTTTTGGCCAAAAATTCTAAGGAAGAAGGAA
1 TTCATTTCTTTTGGCCAAAAATTCTAAGGAAGAAGGAA
90901454 GGAGTTCTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCAAAAATTCTAAGGAAGAAGGAA
Found at i:90902736 original size:40 final size:40
Alignment explanation
Indices: 90902642--90902786 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
90902632 TACTCGAATG
*
90902642 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
90902683 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
90902723 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
90902763 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
90902787 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:90905969 original size:7 final size:7
Alignment explanation
Indices: 90905957--90905983 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
90905947 CCAAAAGCCA
90905957 TAAACCC
1 TAAACCC
90905964 TAAACCC
1 TAAACCC
90905971 TAAACCC
1 TAAACCC
90905978 TAAACC
1 TAAACC
90905984 TTAAGAATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.41, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAACCC
Found at i:90907327 original size:20 final size:20
Alignment explanation
Indices: 90907236--90907327 Score: 54
Period size: 20 Copynumber: 4.8 Consensus size: 20
90907226 ATTAAGAATG
90907236 TTATTAAATTATATATTATT-
1 TTATTAAATTATAT-TTATTA
*
90907256 TTATTAAATTGTATTTA--A
1 TTATTAAATTATATTTATTA
* * * * *
90907274 -TAAT-ACTTATGTTAAAATA
1 TTATTAAATTATATT-TATTA
*
90907293 TGATTAAA-T-TATTTATTA
1 TTATTAAATTATATTTATTA
90907311 TTATTAAATTATATTTA
1 TTATTAAATTATATTTA
90907328 ATAATAATTT
Statistics
Matches: 51, Mismatches: 13, Indels: 16
0.64 0.16 0.20
Matches are distributed among these distances:
16 6 0.12
17 4 0.08
18 10 0.20
19 8 0.16
20 22 0.43
21 1 0.02
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.54
Consensus pattern (20 bp):
TTATTAAATTATATTTATTA
Found at i:90907344 original size:55 final size:55
Alignment explanation
Indices: 90907205--90907346 Score: 155
Period size: 55 Copynumber: 2.5 Consensus size: 55
90907195 TGATTTTTTT
* *
90907205 AATTCATATTTTAATAATAA--TATTAAGAATGTTATTAAATTATATATTATTTTATTA
1 AATT-ATA-TTTAATAATAATTTATTAA-AATATGATTAAATTATATATTA-TTTATTA
* * * *
90907262 AATTGTATTTAATAATACTTATGTTAAAATATGATTAAATTATTTATTA-TTATTA
1 AATTATATTTAATAATAATT-TATTAAAATATGATTAAATTATATATTATTTATTA
90907317 AATTATATTTAATAATAATTTTATTAAAAT
1 AATTATATTTAATAATAA-TTTATTAAAAT
90907347 TTAAAAATAA
Statistics
Matches: 72, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
55 40 0.56
56 4 0.06
57 23 0.32
58 5 0.07
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (55 bp):
AATTATATTTAATAATAATTTATTAAAATATGATTAAATTATATATTATTTATTA
Found at i:90907544 original size:16 final size:16
Alignment explanation
Indices: 90907508--90907574 Score: 89
Period size: 16 Copynumber: 4.2 Consensus size: 16
90907498 TGAATTATTG
* *
90907508 ATTACAGGTCTATTCT
1 ATTACAGCTCTATTCC
* *
90907524 TTTACAGCTCTACTCC
1 ATTACAGCTCTATTCC
*
90907540 ATTACAGCTCTATTAC
1 ATTACAGCTCTATTCC
90907556 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
90907572 ATT
1 ATT
90907575 CCTCCCAACC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.25, C:0.27, G:0.07, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:90908029 original size:32 final size:32
Alignment explanation
Indices: 90907993--90908054 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
90907983 CATAAACTTA
*
90907993 TAAATTAATTACTTAAATTTAATAACTCATGC
1 TAAATTAATTAATTAAATTTAATAACTCATGC
* *
90908025 TAAATTAATTAATTTAATTTTATAACTCAT
1 TAAATTAATTAATTAAATTTAATAACTCAT
90908055 ATTGATTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.45
Consensus pattern (32 bp):
TAAATTAATTAATTAAATTTAATAACTCATGC
Found at i:90909889 original size:12 final size:14
Alignment explanation
Indices: 90909856--90909891 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 14
90909846 CATATCTAAT
90909856 ATCTG-ATCTGTAC
1 ATCTGTATCTGTAC
90909869 ATCTGTATCTGTA-
1 ATCTGTATCTGTAC
90909882 AT-TGTATCTG
1 ATCTGTATCTG
90909892 AGATGGGCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 8 0.36
13 7 0.32
14 7 0.32
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (14 bp):
ATCTGTATCTGTAC
Found at i:90910696 original size:25 final size:25
Alignment explanation
Indices: 90910662--90910711 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
90910652 TTCCAGCCGT
90910662 TATTCTCATACAAATTGATAACAAC
1 TATTCTCATACAAATTGATAACAAC
90910687 TATTCTCATACAAATTGATAACAAC
1 TATTCTCATACAAATTGATAACAAC
90910712 CCATGAATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.20, G:0.04, T:0.32
Consensus pattern (25 bp):
TATTCTCATACAAATTGATAACAAC
Found at i:90912175 original size:29 final size:31
Alignment explanation
Indices: 90912124--90912196 Score: 82
Period size: 29 Copynumber: 2.5 Consensus size: 31
90912114 TATATATAGA
*
90912124 CTAAATAAAATAATAAAACAATAA-AA-TAT
1 CTAATTAAAATAATAAAACAATAATAATTAT
* *
90912153 CTTATTAAAATATTAAATA-AATAATAATTAT
1 CTAATTAAAATAATAAA-ACAATAATAATTAT
90912184 CTAATT-AAATAAT
1 CTAATTAAAATAAT
90912197 TATAAAATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
29 19 0.53
30 9 0.25
31 8 0.22
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.34
Consensus pattern (31 bp):
CTAATTAAAATAATAAAACAATAATAATTAT
Found at i:90912777 original size:21 final size:23
Alignment explanation
Indices: 90912753--90912797 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
90912743 CTCTGGACTG
90912753 TTTGGTTT-TT-AACTATTGGTT
1 TTTGGTTTGTTCAACTATTGGTT
*
90912774 TTTGGTTTGTTCATCTATTGGTT
1 TTTGGTTTGTTCAACTATTGGTT
90912797 T
1 T
90912798 GCTATGGTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.38
22 2 0.10
23 11 0.52
ACGTcount: A:0.11, C:0.07, G:0.20, T:0.62
Consensus pattern (23 bp):
TTTGGTTTGTTCAACTATTGGTT
Found at i:90913347 original size:15 final size:16
Alignment explanation
Indices: 90913318--90913347 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
90913308 ATGTTCTCCA
90913318 TCAATTGTATATAATT
1 TCAATTGTATATAATT
90913334 TCAATTGT-TATAAT
1 TCAATTGTATATAAT
90913348 AACAAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.50
Consensus pattern (16 bp):
TCAATTGTATATAATT
Found at i:90916921 original size:22 final size:22
Alignment explanation
Indices: 90916896--90916937 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
90916886 CATGATAACC
*
90916896 CCATCCAACCCTGCACTTCCCT
1 CCATCCAACCCTACACTTCCCT
*
90916918 CCATCCATCCCTACACTTCC
1 CCATCCAACCCTACACTTCC
90916938 TGTAGGGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.19, C:0.55, G:0.02, T:0.24
Consensus pattern (22 bp):
CCATCCAACCCTACACTTCCCT
Found at i:90917481 original size:8 final size:8
Alignment explanation
Indices: 90917468--90917507 Score: 71
Period size: 8 Copynumber: 5.0 Consensus size: 8
90917458 TCACAAATGC
90917468 CGGCTTTT
1 CGGCTTTT
90917476 CGGCTTTT
1 CGGCTTTT
*
90917484 CAGCTTTT
1 CGGCTTTT
90917492 CGGCTTTT
1 CGGCTTTT
90917500 CGGCTTTT
1 CGGCTTTT
90917508 GCCGATCTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.03, C:0.25, G:0.23, T:0.50
Consensus pattern (8 bp):
CGGCTTTT
Found at i:90921584 original size:29 final size:29
Alignment explanation
Indices: 90921519--90921653 Score: 202
Period size: 29 Copynumber: 4.7 Consensus size: 29
90921509 ACATACATGT
*
90921519 ATATGGCCCACTAGGCCCAA-TCTCATTC
1 ATATGGCCCACTAGGCCCAATTCACATTC
* *
90921547 ATATGGCCCATCT-GGCCCAGTTCATATTC
1 ATATGGCCCA-CTAGGCCCAATTCACATTC
*
90921576 TTATGGCCCACTAGGCCCAATTCACATTC
1 ATATGGCCCACTAGGCCCAATTCACATTC
90921605 ATATGGCCCACTAGGCCCAATTCACATTC
1 ATATGGCCCACTAGGCCCAATTCACATTC
*
90921634 ATATGGCCCATTAGGCCCAA
1 ATATGGCCCACTAGGCCCAA
90921654 ATCATATTAT
Statistics
Matches: 96, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
28 18 0.19
29 78 0.81
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
ATATGGCCCACTAGGCCCAATTCACATTC
Found at i:90921898 original size:16 final size:16
Alignment explanation
Indices: 90921877--90921912 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
90921867 GTAGCCTAAC
90921877 TTTCAGCTTTTCGACA
1 TTTCAGCTTTTCGACA
*
90921893 TTTCAGCTTTTCGACT
1 TTTCAGCTTTTCGACA
90921909 TTTC
1 TTTC
90921913 GGCATTTCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.25, G:0.11, T:0.50
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:90921910 original size:24 final size:23
Alignment explanation
Indices: 90921883--90921935 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 23
90921873 TAACTTTCAG
*
90921883 CTTTTCGACATTTCAGCTTTTCGA
1 CTTTTCGACATTTCAGATTTT-GA
* *
90921907 CTTTTCGGCATTTCAGATTTTGC
1 CTTTTCGACATTTCAGATTTTGA
90921930 CTTTTC
1 CTTTTC
90921936 ATTGTGTGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 7 0.27
24 19 0.73
ACGTcount: A:0.13, C:0.25, G:0.13, T:0.49
Consensus pattern (23 bp):
CTTTTCGACATTTCAGATTTTGA
Found at i:90921920 original size:16 final size:16
Alignment explanation
Indices: 90921877--90921920 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
90921867 GTAGCCTAAC
*
90921877 TTTCAGCTTTTCGACA
1 TTTCAGCATTTCGACA
* *
90921893 TTTCAGCTTTTCGACT
1 TTTCAGCATTTCGACA
*
90921909 TTTCGGCATTTC
1 TTTCAGCATTTC
90921921 AGATTTTGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.14, C:0.25, G:0.14, T:0.48
Consensus pattern (16 bp):
TTTCAGCATTTCGACA
Found at i:90928031 original size:39 final size:39
Alignment explanation
Indices: 90927974--90928053 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
90927964 TCCAATCACA
*
90927974 TATCGAGCATATTTCTCATAAGTTACACACGTATATACT
1 TATCGAGCATATTGCTCATAAGTTACACACGTATATACT
90928013 TATCGAGCATATTGCTCATAAGTTACACACGTATATACT
1 TATCGAGCATATTGCTCATAAGTTACACACGTATATACT
90928052 TA
1 TA
90928054 CACTTATGAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (39 bp):
TATCGAGCATATTGCTCATAAGTTACACACGTATATACT
Found at i:90931849 original size:18 final size:18
Alignment explanation
Indices: 90931826--90931862 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
90931816 AAAGCCGTCG
90931826 GTGGATCCACGATTGTCA
1 GTGGATCCACGATTGTCA
90931844 GTGGATCCACGATTGTCA
1 GTGGATCCACGATTGTCA
90931862 G
1 G
90931863 GCAACCATGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (18 bp):
GTGGATCCACGATTGTCA
Found at i:90932356 original size:29 final size:30
Alignment explanation
Indices: 90932289--90932407 Score: 135
Period size: 29 Copynumber: 4.2 Consensus size: 30
90932279 TACATACATG
*
90932289 CATATGACCCA-CTAGGCCCAA-TC-TCATT
1 CATATGGCCCATCTAGGCCCAATTCAT-ATT
*
90932317 CATATGACCCATCT-GGCCCAATTCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* *
90932346 CTTATGGCCCA-CTAGGCCCAATTCACATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
*
90932375 CATATGGCCCAT-TAGGCCCAAATCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
90932404 -ATAT
1 CATAT
90932408 TCATGCTCAA
Statistics
Matches: 80, Mismatches: 6, Indels: 10
0.83 0.06 0.10
Matches are distributed among these distances:
28 24 0.30
29 55 0.69
30 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.29
Consensus pattern (30 bp):
CATATGGCCCATCTAGGCCCAATTCATATT
Found at i:90932386 original size:58 final size:57
Alignment explanation
Indices: 90932291--90932403 Score: 165
Period size: 58 Copynumber: 2.0 Consensus size: 57
90932281 CATACATGCA
* *
90932291 TATGACCCACTAGGCCCAATCTCATTCATATGACCCATCT-GGCCCAATTCATATTCT
1 TATGACCCACTAGGCCCAATCACATTCATATGACCCAT-TAGGCCCAAATCATATTCT
* *
90932348 TATGGCCCACTAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAAATCATATT
1 TATGACCCACTAGGCCCAA-TCACATTCATATGACCCATTAGGCCCAAATCATATT
90932404 ATATTCATGC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
57 19 0.38
58 31 0.62
ACGTcount: A:0.27, C:0.32, G:0.12, T:0.28
Consensus pattern (57 bp):
TATGACCCACTAGGCCCAATCACATTCATATGACCCATTAGGCCCAAATCATATTCT
Found at i:90932498 original size:18 final size:19
Alignment explanation
Indices: 90932475--90932511 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
90932465 TGGGCCCAAC
90932475 AGCCCA-TCAGGCCCATTT
1 AGCCCACTCAGGCCCATTT
*
90932493 AGCCCACTCTGGCCCATTT
1 AGCCCACTCAGGCCCATTT
90932512 GGCCAATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.19, C:0.41, G:0.16, T:0.24
Consensus pattern (19 bp):
AGCCCACTCAGGCCCATTT
Found at i:90932639 original size:16 final size:16
Alignment explanation
Indices: 90932618--90932653 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
90932608 GTAGCCTAAC
90932618 TTTCAGCTTTTCGACA
1 TTTCAGCTTTTCGACA
*
90932634 TTTCAGCTTTTCGACT
1 TTTCAGCTTTTCGACA
90932650 TTTC
1 TTTC
90932654 GGCATTTCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.25, G:0.11, T:0.50
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:90932651 original size:24 final size:23
Alignment explanation
Indices: 90932624--90932676 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 23
90932614 TAACTTTCAG
*
90932624 CTTTTCGACATTTCAGCTTTTCGA
1 CTTTTCGACATTTCAGATTTT-GA
* *
90932648 CTTTTCGGCATTTCAGATTTTGC
1 CTTTTCGACATTTCAGATTTTGA
90932671 CTTTTC
1 CTTTTC
90932677 ATTGTGTGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 7 0.27
24 19 0.73
ACGTcount: A:0.13, C:0.25, G:0.13, T:0.49
Consensus pattern (23 bp):
CTTTTCGACATTTCAGATTTTGA
Found at i:90932661 original size:16 final size:16
Alignment explanation
Indices: 90932618--90932661 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
90932608 GTAGCCTAAC
*
90932618 TTTCAGCTTTTCGACA
1 TTTCAGCATTTCGACA
* *
90932634 TTTCAGCTTTTCGACT
1 TTTCAGCATTTCGACA
*
90932650 TTTCGGCATTTC
1 TTTCAGCATTTC
90932662 AGATTTTGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.14, C:0.25, G:0.14, T:0.48
Consensus pattern (16 bp):
TTTCAGCATTTCGACA
Found at i:90941233 original size:109 final size:110
Alignment explanation
Indices: 90941092--90941311 Score: 415
Period size: 109 Copynumber: 2.0 Consensus size: 110
90941082 TAACTACTTA
90941092 TTTATAACAACAATAATACCAATTAAGAGTAAGATAAATTAGGTGGACTTCCAAGTTGATTCGTG
1 TTTATAACAACAATAATACCAATTAAGAGTAAGATAAATTAGGTGGACTTCCAAGTTGATTCGTG
*
90941157 GTTTGTCCTTATTCTCAAGGGCTGAGAGAAAAAATCCGATCAAAG
66 GTTTGTCCTTACTCTCAAGGGCTGAGAGAAAAAATCCGATCAAAG
90941202 TTTAT-ACAACAATAATACCAATTAAGAGTAAGATAAATTAGGTGGACTTCCAAGTTGATTCGTG
1 TTTATAACAACAATAATACCAATTAAGAGTAAGATAAATTAGGTGGACTTCCAAGTTGATTCGTG
*
90941266 GTTTGTCGTTACTCTCAAGGGCTGAGAGAAAAAATCCGATCAAAG
66 GTTTGTCCTTACTCTCAAGGGCTGAGAGAAAAAATCCGATCAAAG
90941311 T
1 T
90941312 GAAAGTTGGT
Statistics
Matches: 108, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
109 103 0.95
110 5 0.05
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.29
Consensus pattern (110 bp):
TTTATAACAACAATAATACCAATTAAGAGTAAGATAAATTAGGTGGACTTCCAAGTTGATTCGTG
GTTTGTCCTTACTCTCAAGGGCTGAGAGAAAAAATCCGATCAAAG
Found at i:90941551 original size:22 final size:23
Alignment explanation
Indices: 90941502--90941554 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
90941492 AGTTATTATT
*
90941502 TTTTAAAATATTTATATAAAAAA
1 TTTTAAAATATTTATACAAAAAA
*
90941525 TTTTAAAAT-TTTAT-CAAATAA
1 TTTTAAAATATTTATACAAAAAA
90941546 TATTTAAAA
1 T-TTTAAAA
90941555 ATCATAAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 6 0.22
22 12 0.44
23 9 0.33
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
TTTTAAAATATTTATACAAAAAA
Found at i:90941555 original size:23 final size:21
Alignment explanation
Indices: 90941503--90941556 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 21
90941493 GTTATTATTT
90941503 TTTAAAATATTTATATAAAAAA
1 TTTAAAA-ATTTATATAAAAAA
*
90941525 TTTTAAAATTT-TATCAAATAATA
1 TTTAAAAATTTATAT-AAA-AA-A
90941548 TTTAAAAAT
1 TTTAAAAAT
90941557 CATAAAACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 3 0.11
21 7 0.26
22 8 0.30
23 9 0.33
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTAAAAATTTATATAAAAAA
Found at i:90947034 original size:20 final size:18
Alignment explanation
Indices: 90946984--90947092 Score: 66
Period size: 20 Copynumber: 5.9 Consensus size: 18
90946974 CTATAAGATA
90946984 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
90947001 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TTT
**
90947021 AATATTAAATTAATAAAAT
1 AATATTAAATTAAT-ATTT
*
90947040 ACTATTAAGA-TAAGTA-TT
1 AATATTAA-ATTAA-TATTT
* *
90947058 AA-ATTAAATTCACTATTA
1 AATATTAAATT-AATATTT
90947076 AATTATTAAATTAATAT
1 AA-TATTAAATTAATAT
90947093 CATTTTTGGA
Statistics
Matches: 71, Mismatches: 9, Indels: 22
0.70 0.09 0.22
Matches are distributed among these distances:
16 1 0.01
17 19 0.27
18 7 0.10
19 18 0.25
20 26 0.37
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:90949500 original size:18 final size:19
Alignment explanation
Indices: 90949463--90949500 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
90949453 TTGTTTAGTA
90949463 TAGCTTAAAAAATCACTTT
1 TAGCTTAAAAAATCACTTT
* *
90949482 TAGCTTGAACAAT-ACTTT
1 TAGCTTAAAAAATCACTTT
90949500 T
1 T
90949501 GGAAGAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (19 bp):
TAGCTTAAAAAATCACTTT
Found at i:90950271 original size:21 final size:22
Alignment explanation
Indices: 90950245--90950298 Score: 83
Period size: 21 Copynumber: 2.5 Consensus size: 22
90950235 CTTTATTAAG
*
90950245 ACAAACAGACCCTTAAAA-AAA
1 ACAAACAGACCCCTAAAAGAAA
90950266 ACAAACAGACCCCTAAAAGAAA
1 ACAAACAGACCCCTAAAAGAAA
*
90950288 ATAAACAGACC
1 ACAAACAGACC
90950299 AAACAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 17 0.57
22 13 0.43
ACGTcount: A:0.59, C:0.26, G:0.07, T:0.07
Consensus pattern (22 bp):
ACAAACAGACCCCTAAAAGAAA
Found at i:90952764 original size:40 final size:40
Alignment explanation
Indices: 90952696--90952823 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
90952686 TCTTCAAGAT
90952696 TTAG-CCGGATATAACAACTCA-CACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACT-AGCACAAATGCCTTCGGGTC
* *
90952735 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
* * * *
90952775 ATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
*
90952815 TTAGTCCGG
1 TTAGCCCGG
90952824 TTATCATCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
39 6 0.08
40 68 0.91
41 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:90956915 original size:16 final size:17
Alignment explanation
Indices: 90956884--90956916 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
90956874 TTCATAAACA
*
90956884 TATATCACTCATTTCAT
1 TATATCAATCATTTCAT
90956901 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
90956917 GCACCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:90957322 original size:101 final size:101
Alignment explanation
Indices: 90957195--90957407 Score: 320
Period size: 101 Copynumber: 2.1 Consensus size: 101
90957185 CATGGCCCTG
* *
90957195 CCATGGTCTTACATTCGTAGTGCCATAACCCAGTTATGGTCTTATCATCACAATGCCATAGCCTA
1 CCATGGTCTTACATTCGAAGTGCCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCTA
* * *
90957260 CCTATGGTCTTCCATATAAATATTGCCATGGTCCAA
66 CCTATGGTCTTACATATAAACACTGCCATGGTCCAA
* * *
90957296 CCATGGTCTTACGTTC-AAGGTGCCATAACCCAGTTATGGTCTTTTCATTAAAATGCCATAGCCT
1 CCATGGTCTTACATTCGAA-GTGCCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCT
* *
90957360 AGCTATGGTCTTACATATAAACACTGTCATGGTCCAA
65 ACCTATGGTCTTACATATAAACACTGCCATGGTCCAA
90957397 CCATGGTCTTA
1 CCATGGTCTTA
90957408 TCCGTCAAAA
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
100 1 0.01
101 100 0.99
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (101 bp):
CCATGGTCTTACATTCGAAGTGCCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCTA
CCTATGGTCTTACATATAAACACTGCCATGGTCCAA
Found at i:90959107 original size:13 final size:13
Alignment explanation
Indices: 90959091--90959115 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
90959081 TTTTTCATGA
90959091 AAATTCTTTAATC
1 AAATTCTTTAATC
90959104 AAATTCTTTAAT
1 AAATTCTTTAAT
90959116 TGAACAGTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (13 bp):
AAATTCTTTAATC
Found at i:90960878 original size:27 final size:27
Alignment explanation
Indices: 90960496--90960870 Score: 479
Period size: 27 Copynumber: 13.9 Consensus size: 27
90960486 AAAGTACTCC
*
90960496 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
90960523 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * *
90960550 CAATTTTTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
90960577 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
90960604 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
**
90960631 CGATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
90960658 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
90960685 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
90960712 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
90960739 TGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
90960766 CGATTTGTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
90960793 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
90960820 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
90960847 CGATTTACAGAATTACCGTTTTAC
1 CGATTTACAGAATTACCGTTTTAC
90960871 AATTGATTGT
Statistics
Matches: 297, Mismatches: 43, Indels: 16
0.83 0.12 0.04
Matches are distributed among these distances:
26 4 0.01
27 289 0.97
28 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:90961058 original size:27 final size:27
Alignment explanation
Indices: 90960883--90961078 Score: 205
Period size: 27 Copynumber: 7.3 Consensus size: 27
90960873 TTGATTGTGA
* *
90960883 AATTACTGAAATAACCC-TGTAAGGTAG
1 AATTACCGAAAT-ACCCTTGTAGGGTAG
* * * *
90960910 AATTTCTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
90960937 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
90960964 AATTACCAAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
90960991 AATTATCGAAATATCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
90961018 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
90961045 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
90961072 AATTACC
1 AATTACC
90961079 ATTTTGCCCC
Statistics
Matches: 146, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 4 0.03
27 142 0.97
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.28
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:90961320 original size:27 final size:26
Alignment explanation
Indices: 90961277--90961359 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 26
90961267 CGGAGGAAAC
* *
90961277 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGATCTGCCAC-AATATCT
90961304 GTTCTGGTGGATCTGCCACAATATCT
1 GTTCTGGTGGATCTGCCACAATATCT
* *
90961330 GTATTTGGT-GACTCTGTCACAATATCT
1 GT-TCTGGTGGA-TCTGCCACAATATCT
90961357 GTT
1 GTT
90961360 GACCGATCGA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
26 12 0.24
27 38 0.76
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGATCTGCCACAATATCT
Found at i:90961479 original size:22 final size:22
Alignment explanation
Indices: 90961447--90961505 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
90961437 CCCGTTATTA
*
90961447 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
90961469 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
90961491 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
90961506 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:90961692 original size:27 final size:27
Alignment explanation
Indices: 90961670--90961744 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 27
90961660 TAGGTGGGTT
*
90961670 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
90961697 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
90961724 TGTCACGATATCTGT-TCTGGT
1 TGCCACAATATCTGTATCTGGT
90961745 AGCCATGCTG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 6 0.14
27 36 0.84
28 1 0.02
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.37
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:90961897 original size:6 final size:6
Alignment explanation
Indices: 90961886--90961992 Score: 105
Period size: 6 Copynumber: 17.8 Consensus size: 6
90961876 CTGTCATGTA
* * *
90961886 ATTCTG ATTCTG ATTCTG -TTACTA ATACTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
90961934 ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTTTG -TTACTG ATTCTG
1 ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
90961982 ATTCTG ATTCT
1 ATTCTG ATTCT
90961993 CATTTTGGTT
Statistics
Matches: 85, Mismatches: 8, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
5 7 0.08
6 73 0.86
7 4 0.05
8 1 0.01
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:90961927 original size:36 final size:36
Alignment explanation
Indices: 90961886--90961966 Score: 144
Period size: 36 Copynumber: 2.2 Consensus size: 36
90961876 CTGTCATGTA
90961886 ATTCTGATTCTGATTCTGTTACTAATACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATACTAATTCTG
* *
90961922 ATTCTGATTCTGATTCTGTTACTAATATTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATACTAATTCTG
90961958 ATTCTGATT
1 ATTCTGATT
90961967 TTGTTACTGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.23, C:0.15, G:0.12, T:0.49
Consensus pattern (36 bp):
ATTCTGATTCTGATTCTGTTACTAATACTAATTCTG
Found at i:90961990 original size:36 final size:33
Alignment explanation
Indices: 90961886--90961992 Score: 121
Period size: 36 Copynumber: 3.2 Consensus size: 33
90961876 CTGTCATGTA
90961886 ATTCTGATTCTGATTCTGTTACTAATACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACT-AT-CT-ATTCTG
*
90961922 ATTCTGATTCTGATTCTGTTACTA-ATA-T-TG
1 ATTCTGATTCTGATTCTGTTACTATCTATTCTG
*
90961952 ATTCTGATTCTGATTTTGTTACTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACT-A-TCT-ATTCTG
90961988 ATTCT
1 ATTCT
90961993 CATTTTGGTT
Statistics
Matches: 62, Mismatches: 3, Indels: 12
0.81 0.04 0.16
Matches are distributed among these distances:
30 24 0.39
31 2 0.03
32 1 0.02
33 2 0.03
34 1 0.02
35 2 0.03
36 30 0.48
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.50
Consensus pattern (33 bp):
ATTCTGATTCTGATTCTGTTACTATCTATTCTG
Found at i:90961998 original size:30 final size:30
Alignment explanation
Indices: 90961861--90962013 Score: 150
Period size: 30 Copynumber: 5.1 Consensus size: 30
90961851 TTGCATTCAC
* * * *
90961861 ATTCTGATCCTGATTCTGTCATGTAATTCTG
1 ATTCTGATTCTGATTTTGTTA-CTAATTCTG
* **
90961892 ATTCTGATTCTG-TTACTAATACTAATTCTG
1 ATTCTGATTCTGATT-TTGTTACTAATTCTG
*
90961922 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTTTGTTACTAAT-TCTG
*
90961952 ATTCTGATTCTGATTTTGTTACTGATTCTG
1 ATTCTGATTCTGATTTTGTTACTAATTCTG
* *
90961982 ATTCTGATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTTT-GTTACTAATTCTG
90962012 AT
1 AT
90962014 AATGTTTCTT
Statistics
Matches: 105, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
29 1 0.01
30 84 0.80
31 20 0.19
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTTTGTTACTAATTCTG
Found at i:90964021 original size:27 final size:27
Alignment explanation
Indices: 90963991--90964051 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
90963981 CGACTTGTAA
90963991 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAGTAC-CCTCGATTTACAG
****
90964018 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
90964045 AATTACC
1 AATTACC
90964052 GTTTTACCCT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.07
27 27 0.93
ACGTcount: A:0.33, C:0.26, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTACAG
Found at i:90964049 original size:54 final size:54
Alignment explanation
Indices: 90964008--90964390 Score: 495
Period size: 54 Copynumber: 7.1 Consensus size: 54
90963998 AAAGTACTCC
90964008 CGATTTACAGAATTACCGTTTTACCCTC-GATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAG-TTTACAGAATTACCGTTTTACCCT
* ** * *
90964062 CAATTTTTAAAATTATCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
* * * *
90964116 C-AGTTTACAAAATTACCTTTTTACCCTCAGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
* * *
90964170 CGATTTATAGAATTACTGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
* * *
90964224 CGATTTATAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
* *
90964278 CGATTTACAGAATTACTGTTTTACCCTCGATTTGTA-A-AATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTC-AGTT-TACAGAATTACCGTTTTACCCT
** * * *
90964332 TTATTTACAGAATTACTGGTTTACCATCAGTTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
*
90964386 TGATT
1 CGATT
90964391 GTGAAATTAC
Statistics
Matches: 292, Mismatches: 30, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
52 2 0.01
53 5 0.02
54 277 0.95
55 6 0.02
56 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (54 bp):
CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
Found at i:90964052 original size:27 final size:27
Alignment explanation
Indices: 90964008--90964390 Score: 445
Period size: 27 Copynumber: 14.2 Consensus size: 27
90963998 AAAGTACTCC
90964008 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
90964035 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * *
90964062 CAATTTTTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
90964089 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
90964116 C-AGTTTACAAAATTACCTTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
90964143 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
90964170 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
90964197 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
90964224 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
90964251 C-AGTTTACAAAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
90964278 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
90964305 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * * *
90964332 TTATTTACAGAATTACTGGTTTACCAT
1 CGATTTACAGAATTACCGTTTTACCCT
90964359 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
90964386 TGATT
1 CGATT
90964391 GTGAAATTAC
Statistics
Matches: 307, Mismatches: 41, Indels: 16
0.84 0.11 0.04
Matches are distributed among these distances:
26 4 0.01
27 299 0.97
28 4 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:90964099 original size:81 final size:81
Alignment explanation
Indices: 90964011--90964385 Score: 506
Period size: 81 Copynumber: 4.6 Consensus size: 81
90964001 GTACTCCCGA
* *
90964011 TTTACAGAATTACCGTTTTACCCTC-GATTTACAGAATTACCGTTTTACCCTCAATTTTTAAAAT
1 TTTACAGAATTACTGTTTTACCCTCAG-TTTACAGAATTACCGTTTTACCCTCAATTTATAAAAT
*
90964075 TATCGTTTTACCCTCAG
65 TACCGTTTTACCCTCAG
* * * * *
90964092 TTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCTTTTTACCCTCAGTTTACAAAATT
1 TTTACAGAATTACTGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCAATTTATAAAATT
*
90964157 ATCGTTTTACCCTC-G
66 ACCGTTTTACCCTCAG
* * * *
90964172 ATTTATAGAATTACTGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCTCGATTTATAGAAT
1 -TTTACAGAATTACTGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCAATTTATAAAAT
90964237 TACCGTTTTACCCTCAG
65 TACCGTTTTACCCTCAG
* * * *
90964254 TTTACAAAATTACTGTTTTACCCTC-GATTTACAGAATTACTGTTTTACCCTCGATTTGTAAAAT
1 TTTACAGAATTACTGTTTTACCCTCAG-TTTACAGAATTACCGTTTTACCCTCAATTTATAAAAT
*
90964318 TACCGTTTTACCCTTTA-
65 TACCGTTTTACCC-TCAG
* *
90964335 TTTACAGAATTACTGGTTTACCATCAGTTTACAGAATTACCGTTTTACCCT
1 TTTACAGAATTACTGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
90964386 TGATTGTGAA
Statistics
Matches: 264, Mismatches: 24, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
80 2 0.01
81 257 0.97
82 5 0.02
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.41
Consensus pattern (81 bp):
TTTACAGAATTACTGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCAATTTATAAAATT
ACCGTTTTACCCTCAG
Found at i:90964425 original size:27 final size:27
Alignment explanation
Indices: 90964395--90964588 Score: 196
Period size: 27 Copynumber: 7.2 Consensus size: 27
90964385 TTGATTGTGA
*
90964395 AATTACTGTAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
90964422 AATT-TTCGAAATACCCCTATAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * * *
90964449 AATTACTTAAATACCCTTATAGGATA-
1 AATTACTGAAATACCCCTGTAGGGTAG
**
90964475 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
90964502 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
90964529 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
90964556 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
90964583 AATTAC
1 AATTAC
90964589 CATTTTGCCC
Statistics
Matches: 139, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 22 0.16
27 116 0.83
28 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:90964462 original size:54 final size:55
Alignment explanation
Indices: 90964395--90964589 Score: 229
Period size: 54 Copynumber: 3.6 Consensus size: 55
90964385 TTGATTGTGA
* * ** *
90964395 AATTACTGT-AATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAG
1 AATTACTCTAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
90964449 AATTACT-TAAATACCCTTATAGGATA-AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTCTAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
90964502 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTCTAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
90964556 AATTAC-CGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTCTAAATACCCTTGTAGGGTAGAATTACC
90964590 ATTTTGCCCC
Statistics
Matches: 121, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
52 1 0.01
53 45 0.37
54 75 0.62
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (55 bp):
AATTACTCTAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:90964813 original size:27 final size:26
Alignment explanation
Indices: 90964770--90964852 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 26
90964760 CGGAGGAAAC
* *
90964770 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGATCTGCCAC-AATATCT
90964797 GTTCTGGTGGATCTGCCACAATATCT
1 GTTCTGGTGGATCTGCCACAATATCT
* *
90964823 GTATTTGGT-GACTCTGTCACAATATCT
1 GT-TCTGGTGGA-TCTGCCACAATATCT
90964850 GTT
1 GTT
90964853 GACCGATCGA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
26 12 0.24
27 38 0.76
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGATCTGCCACAATATCT
Found at i:90964972 original size:22 final size:22
Alignment explanation
Indices: 90964940--90964998 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
90964930 CCCCTTATTA
*
90964940 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
90964962 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
90964984 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
90964999 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:90965185 original size:27 final size:27
Alignment explanation
Indices: 90965163--90965236 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
90965153 TAGGTGGGTT
*
90965163 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
90965190 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
90965217 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
90965237 CAGCTATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:90965390 original size:6 final size:6
Alignment explanation
Indices: 90965379--90965540 Score: 165
Period size: 6 Copynumber: 26.8 Consensus size: 6
90965369 CTGTCACGTA
* *
90965379 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * *
90965427 ATTCTG -TTACTG ATTCTA ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
90965476 ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
90965524 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
90965541 CATTTTGGTT
Statistics
Matches: 131, Mismatches: 12, Indels: 26
0.78 0.07 0.15
Matches are distributed among these distances:
5 10 0.08
6 111 0.85
7 8 0.06
8 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:90965494 original size:85 final size:85
Alignment explanation
Indices: 90965354--90965540 Score: 338
Period size: 85 Copynumber: 2.2 Consensus size: 85
90965344 TTGCATTCAC
* *
90965354 ATTCTGATCCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
90965419 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
* *
90965439 ATTCTAATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
90965504 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
90965524 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
90965541 CATTTTGGTT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 97 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACTG
Found at i:90965561 original size:30 final size:30
Alignment explanation
Indices: 90965354--90965540 Score: 244
Period size: 30 Copynumber: 6.4 Consensus size: 30
90965344 TTGCATTCAC
* *
90965354 ATTCTGATCCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
*
90965385 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
90965415 ATTCTGATTCTGATTCTG-T--T-A--CTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* *
90965439 ATTCTAATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
90965470 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
90965500 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
90965530 ATTCTGATTCT
1 ATTCTGATTCT
90965541 CATTTTGGTT
Statistics
Matches: 139, Mismatches: 8, Indels: 19
0.84 0.05 0.11
Matches are distributed among these distances:
24 20 0.14
26 1 0.01
27 1 0.01
28 1 0.01
29 3 0.02
30 70 0.50
31 43 0.31
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:90970635 original size:3 final size:3
Alignment explanation
Indices: 90970627--90970653 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
90970617 TACTTAAAGA
90970627 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
90970654 GATGATGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:90976510 original size:15 final size:15
Alignment explanation
Indices: 90976486--90976517 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
90976476 TAGGCATGCA
*
90976486 AAATATAAAAGACAT
1 AAATACAAAAGACAT
90976501 AAATACAAAAGACAT
1 AAATACAAAAGACAT
90976516 AA
1 AA
90976518 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:90980640 original size:22 final size:22
Alignment explanation
Indices: 90980594--90980644 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
90980584 AAATAGTTCT
*
90980594 TAAAAATCTTTTAAAAAAATTA
1 TAAAAATCTTTTAAAAAAATGA
*
90980616 TAAATAATCTTTT-AAAAAGTGA
1 TAAA-AATCTTTTAAAAAAATGA
90980638 TAAAAAT
1 TAAAAAT
90980645 TTGAATTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 3 0.12
22 15 0.58
23 8 0.31
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (22 bp):
TAAAAATCTTTTAAAAAAATGA
Found at i:90989658 original size:9 final size:9
Alignment explanation
Indices: 90989644--90989718 Score: 105
Period size: 9 Copynumber: 8.3 Consensus size: 9
90989634 TTTATACAAA
*
90989644 TAATTCTGT
1 TAATTCGGT
90989653 TAATTCGGT
1 TAATTCGGT
* *
90989662 TAATTTGGG
1 TAATTCGGT
*
90989671 TAATTCGGG
1 TAATTCGGT
90989680 TAATTCGGT
1 TAATTCGGT
*
90989689 TAATTCGAT
1 TAATTCGGT
90989698 TAATTCGGT
1 TAATTCGGT
90989707 TAATTCGGT
1 TAATTCGGT
90989716 TAA
1 TAA
90989719 CTTTATACTT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 59 1.00
ACGTcount: A:0.25, C:0.09, G:0.21, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:91006588 original size:30 final size:30
Alignment explanation
Indices: 91006552--91006610 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
91006542 ATGGTATTTG
91006552 ATTGTGAATATGAATTTATATGATTAATTA
1 ATTGTGAATATGAATTTATATGATTAATTA
91006582 ATTGTGAATATGAATTTATATGATTAATT
1 ATTGTGAATATGAATTTATATGATTAATT
91006611 GGTTAATATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.47
Consensus pattern (30 bp):
ATTGTGAATATGAATTTATATGATTAATTA
Found at i:91026212 original size:13 final size:13
Alignment explanation
Indices: 91026194--91026218 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91026184 GGGAGAGGAC
91026194 ACGGCCGTGTGAT
1 ACGGCCGTGTGAT
91026207 ACGGCCGTGTGA
1 ACGGCCGTGTGA
91026219 AAACAGAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.20
Consensus pattern (13 bp):
ACGGCCGTGTGAT
Found at i:91028544 original size:19 final size:19
Alignment explanation
Indices: 91028522--91028559 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
91028512 TTTTAAAGAC
91028522 TTTAC-TTTATTTTTATTTA
1 TTTACTTTTA-TTTTATTTA
91028541 TTTACTTTTATTTTATTTA
1 TTTACTTTTATTTTATTTA
91028560 CTTTTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTACTTTTATTTTATTTA
Found at i:91028549 original size:15 final size:15
Alignment explanation
Indices: 91028522--91028583 Score: 67
Period size: 14 Copynumber: 4.2 Consensus size: 15
91028512 TTTTAAAGAC
91028522 TTTACTTTA-TTTTTA
1 TTTA-TTTACTTTTTA
91028537 TTTATTTAC-TTTTA
1 TTTATTTACTTTTTA
91028551 TTTTATTTACTTTTT-
1 -TTTATTTACTTTTTA
* *
91028566 TTAAATTACTTTTTA
1 TTTATTTACTTTTTA
91028581 TTT
1 TTT
91028584 TATTCTTAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 21 0.52
15 15 0.38
16 4 0.10
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTATTTACTTTTTA
Found at i:91041777 original size:18 final size:19
Alignment explanation
Indices: 91041742--91041778 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
91041732 TGACGTTTGG
91041742 GCACTCAATTTAGTAAAAA
1 GCACTCAATTTAGTAAAAA
91041761 GCACT-AATTT-GTAAAAA
1 GCACTCAATTTAGTAAAAA
91041778 G
1 G
91041779 TGCAAAAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 5 0.28
19 5 0.28
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.27
Consensus pattern (19 bp):
GCACTCAATTTAGTAAAAA
Found at i:91042884 original size:49 final size:49
Alignment explanation
Indices: 91042823--91042997 Score: 226
Period size: 49 Copynumber: 3.5 Consensus size: 49
91042813 TGAGGTCACG
* *
91042823 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGATCGCA
* * * *
91042872 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CGGATAA-TT-GATCGCA
* * *
91042923 TGCGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGATAGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGATCGCA
*
91042972 TGTGTAGTAATAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
91042998 TGCATACCAA
Statistics
Matches: 107, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
49 63 0.59
50 6 0.06
51 38 0.36
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGATCGCA
Found at i:91042991 original size:100 final size:100
Alignment explanation
Indices: 91042818--91043000 Score: 312
Period size: 100 Copynumber: 1.8 Consensus size: 100
91042808 TATTGTGAGG
* * * * * *
91042818 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGCGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGATAGCATGTGTAGTAAT
91042883 AAGTGCAGGCTACTATGCGTACTCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACTCGATAACTTCGA
91042918 TCACGTGCGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGATAGCATGTGTAGTAAT
1 TCACGTGCGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGATAGCATGTGTAGTAAT
91042983 AAGTGCAGGCTACTATGC
66 AAGTGCAGGCTACTATGC
91043001 ATACCAAATA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 77 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGCGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGATAGCATGTGTAGTAAT
AAGTGCAGGCTACTATGCGTACTCGATAACTTCGA
Found at i:91044967 original size:45 final size:45
Alignment explanation
Indices: 91044917--91045009 Score: 116
Period size: 45 Copynumber: 2.1 Consensus size: 45
91044907 TGTTACAATG
* *
91044917 GTTGAAAGGCACTATGACACTATAT-TGAAAACGTATAAGACCATA
1 GTTGAAAGACACTATGACACTATATCAG-AAACGTATAAGACCATA
* * * *
91044962 GTTGAAAGACAGTATGGCATTGTATCAGAAACGTATAAGACCATA
1 GTTGAAAGACACTATGACACTATATCAGAAACGTATAAGACCATA
91045007 GTT
1 GTT
91045010 TAAAAACATT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
45 40 0.98
46 1 0.02
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.26
Consensus pattern (45 bp):
GTTGAAAGACACTATGACACTATATCAGAAACGTATAAGACCATA
Found at i:91046486 original size:3 final size:3
Alignment explanation
Indices: 91046478--91046502 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
91046468 AACTAACGTG
91046478 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
91046503 AGAAAGTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:91048615 original size:46 final size:46
Alignment explanation
Indices: 91048558--91048883 Score: 465
Period size: 46 Copynumber: 7.0 Consensus size: 46
91048548 AGTGTGCTCT
* *
91048558 CTGAAATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
91048604 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
91048650 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGAAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
91048696 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
91048742 CTGATATGAAATGTGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG--A----AATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
91048794 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * ** * *
91048840 ATGACA-GAAAATGAGTAAGACCATATTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
91048884 TCATGTCAAA
Statistics
Matches: 260, Mismatches: 13, Indels: 14
0.91 0.05 0.05
Matches are distributed among these distances:
45 1 0.00
46 213 0.82
48 1 0.00
50 1 0.00
52 44 0.17
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:91048852 original size:98 final size:98
Alignment explanation
Indices: 91048659--91048849 Score: 330
Period size: 98 Copynumber: 2.0 Consensus size: 98
91048649 CCTGATATGA
91048659 AATGTGTAAGACCATGGTTGAAAGACACCATGGAAACCTGATATGAAATGTGTAAGACCATGGTT
1 AATGTGTAAGACCATGGTTGAAAGACACCATGGAAACCTGATATGAAATGTGTAAGACCATGGTT
* *
91048724 GAAAGACACCATGGCAACCTGATATGAAATGTG
66 GAAAGACACCATGGCAACATGACATGAAATGTG
* *
91048757 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTT
1 AATGTGTAAGACCATGGTTGAAAGACACCATGGAAACCTGATATGAAATGTGTAAGACCATGGTT
*
91048822 GAAAGATACCATGGCAACATGACA-GAAA
66 GAAAGACACCATGGCAACATGACATGAAA
91048850 ATGAGTAAGA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
97 4 0.05
98 84 0.95
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (98 bp):
AATGTGTAAGACCATGGTTGAAAGACACCATGGAAACCTGATATGAAATGTGTAAGACCATGGTT
GAAAGACACCATGGCAACATGACATGAAATGTG
Found at i:91051640 original size:29 final size:30
Alignment explanation
Indices: 91051590--91051657 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
91051580 TGGCCCAAGA
* * *
91051590 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTAAAGGACTAATAGT
*
91051620 GTAAATATGAAAAGTTAAAGGACTAATAGT
1 GTAAATATCAAAAGTTAAAGGACTAATAGT
*
91051650 GCAAATAT
1 GTAAATAT
91051658 TTTAAGGCTG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.49, C:0.06, G:0.18, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTAAAGGACTAATAGT
Found at i:91052017 original size:3 final size:3
Alignment explanation
Indices: 91052009--91052039 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
91051999 AACTAACGTG
91052009 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
91052040 AGAAAGTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:91054173 original size:46 final size:46
Alignment explanation
Indices: 91054101--91054420 Score: 489
Period size: 46 Copynumber: 7.0 Consensus size: 46
91054091 AGTGTGCTCT
* * *
91054101 CTGAAATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
* * *
91054147 CTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
*
91054193 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGAAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
91054239 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
* *
91054285 CTGATATGAAATGTGTAAGGCCATGGTTGAAAGACACCATAGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
*
91054331 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
* * * * *
91054377 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGACACCATGGCA
91054421 TCATGTCAAA
Statistics
Matches: 255, Mismatches: 18, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
45 1 0.00
46 254 1.00
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
Found at i:91063328 original size:26 final size:26
Alignment explanation
Indices: 91063299--91063405 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
91063289 TGGTACAAAT
91063299 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
91063325 TGATAGTGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91063351 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91063377 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
91063402 TGAT
1 TGAT
91063406 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
25 22 0.29
26 53 0.71
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Done.