Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 268 of 373
Found at i:91066269 original size:50 final size:50
Alignment explanation
Indices: 91066194--91066296 Score: 197
Period size: 50 Copynumber: 2.1 Consensus size: 50
91066184 TCATCAATAA
*
91066194 TATCTAGGGCCTAATTGCCACTTAAGTCCTTTCTCATTTAGTAATTAAGC
1 TATCTAGGGCCTAATTGCCACTTAAGTCCTTCCTCATTTAGTAATTAAGC
91066244 TATCTAGGGCCTAATTGCCACTTAAGTCCTTCCTCATTTAGTAATTAAGC
1 TATCTAGGGCCTAATTGCCACTTAAGTCCTTCCTCATTTAGTAATTAAGC
91066294 TAT
1 TAT
91066297 TTGATCACCT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (50 bp):
TATCTAGGGCCTAATTGCCACTTAAGTCCTTCCTCATTTAGTAATTAAGC
Found at i:91066779 original size:296 final size:296
Alignment explanation
Indices: 91066244--91066782 Score: 947
Period size: 296 Copynumber: 1.8 Consensus size: 296
91066234 GTAATTAAGC
*
91066244 TATCTAGGGCCTAATTGCCACTTAAGTCCTTCCTCATTTAGTAATTAAGCTATTTGATCACCTAA
1 TATCTAGGGCCTAATTGCCACTTAAGTCCTTCCTCATTTAGTAATTAACCTATTTGATCACCTAA
* *
91066309 ATGAAATAGTTACCATGTTTTGCACCTTTTTCAATTTAGTCCTTCTTTCTTTAATTAGTTATCTA
66 ATGAAATAATTACCATGTTTTGCACCTTTCTCAATTTAGTCCTTCTTTCTTTAATTAGTTATCTA
* * * *
91066374 AACGATAAAATTTCTTAACCAAAAATTACTAGGACTCTAATGACTCGAAAAATATTCTATAAATC
131 AACGATAAAATTTCTTAACCAAAAATTAATACGACTCTAATGACTCAAAAAATATTCTATAAATA
* *
91066439 AAATCTTTGAGTCGACACAATGGAAATTTGTGGTTCAGAAACCACTGTTCCATCACATATATTAT
196 AAATCTGTGAGTCAACACAATGGAAATTTGTGGTTCAGAAACCACTGTTCCATCACATATATTAT
91066504 TTTATCATTTTCAATCAAATTATCACTCATCAATAA
261 TTTATCATTTTCAATCAAATTATCACTCATCAATAA
91066540 TATCTA-GGCCTAATTGCCACTTAAGTCCTTCCTCATTTAGTAATTAACCTATTTGATCACCTAA
1 TATCTAGGGCCTAATTGCCACTTAAGTCCTTCCTCATTTAGTAATTAACCTATTTGATCACCTAA
* *
91066604 ATGCAATAATTACCATGTTTTGCACCTTTCTCAATTTTAGTCCTTCTTTCTTTAATTATTTATCT
66 ATGAAATAATTACCATGTTTTGCACCTTTCTCAA-TTTAGTCCTTCTTTCTTTAATTAGTTATCT
91066669 AAACGATAAAATTTCTTAACCAAAAATTAATACGACTCTAATGACTCAAAAAATATTCTATAAAT
130 AAACGATAAAATTTCTTAACCAAAAATTAATACGACTCTAATGACTCAAAAAATATTCTATAAAT
91066734 AAAATCTGTGAGTCAACACAATGGAAATTTGTGGTTC-GTAAACCACTGT
195 AAAATCTGTGAGTCAACACAATGGAAATTTGTGGTTCAG-AAACCACTGT
91066783 CCTGTCACCA
Statistics
Matches: 230, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
295 89 0.39
296 141 0.61
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.37
Consensus pattern (296 bp):
TATCTAGGGCCTAATTGCCACTTAAGTCCTTCCTCATTTAGTAATTAACCTATTTGATCACCTAA
ATGAAATAATTACCATGTTTTGCACCTTTCTCAATTTAGTCCTTCTTTCTTTAATTAGTTATCTA
AACGATAAAATTTCTTAACCAAAAATTAATACGACTCTAATGACTCAAAAAATATTCTATAAATA
AAATCTGTGAGTCAACACAATGGAAATTTGTGGTTCAGAAACCACTGTTCCATCACATATATTAT
TTTATCATTTTCAATCAAATTATCACTCATCAATAA
Found at i:91069369 original size:38 final size:39
Alignment explanation
Indices: 91069253--91069550 Score: 362
Period size: 38 Copynumber: 7.6 Consensus size: 39
91069243 GCTCCTCGTT
* *
91069253 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
91069293 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGAATTAGTATCTCGCA
91069333 CAAATGCCTTCGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTATCTCGCA
*
91069371 CAAATGCCTTCGGGC-TAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTATCTCGCA
91069409 CAAATGCCTTCGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTATCTCGCA
* *
91069447 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGAATTAGTATCTCGCA
* *
91069487 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
91069528 C-AA-GCCTTCGGACTTAGCCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGA
91069551 CATCATTCAA
Statistics
Matches: 238, Mismatches: 11, Indels: 20
0.88 0.04 0.07
Matches are distributed among these distances:
37 1 0.00
38 117 0.49
39 13 0.05
40 97 0.41
41 10 0.04
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:91069422 original size:76 final size:77
Alignment explanation
Indices: 91069253--91069550 Score: 358
Period size: 78 Copynumber: 3.8 Consensus size: 77
91069243 GCTCCTCGTT
* * *
91069253 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTC-GG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCC
*
91069316 GGATTTAGTAACTCGCA
61 GGATTTAGTATCTCGCA
*
91069333 CAAATGCCTTCGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGC-TAGCCCGGAAT
1 CAAATGCCTTCGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGATT
91069397 TAGTATCTCGCA
66 TAGTATCTCGCA
* *
91069409 CAAATGCCTTCGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 CAAATGCCTTCGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGG-GCTTAGCCCGGAT
91069474 TTAGTATCTCGCA
65 TTAGTATCTCGCA
* * *
91069487 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCAC-AA-GCCTTCGGACTTAGCCC
1 CAAATGCCTTCGG--CTTAGCCCGGA-ATTAGT-ATC-TCGCACAAATGCCTTCGGGCTTAGCCC
91069548 GGA
61 GGA
91069551 CATCATTCAA
Statistics
Matches: 197, Mismatches: 12, Indels: 20
0.86 0.05 0.09
Matches are distributed among these distances:
76 71 0.36
77 4 0.02
78 76 0.39
79 11 0.06
80 26 0.13
81 9 0.05
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (77 bp):
CAAATGCCTTCGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGATT
TAGTATCTCGCA
Found at i:91076791 original size:93 final size:93
Alignment explanation
Indices: 91076679--91076850 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
91076669 CGCCCATAAG
*
91076679 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
91076743 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
91076772 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
91076837 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
91076851 TCAATCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:91076845 original size:46 final size:46
Alignment explanation
Indices: 91076672--91076847 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
91076662 TGTAACCCGC
* *
91076672 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
91076718 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
91076768 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
91076811 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
91076848 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:91079827 original size:27 final size:27
Alignment explanation
Indices: 91079797--91079898 Score: 150
Period size: 27 Copynumber: 3.8 Consensus size: 27
91079787 TAAATGAACC
* *
91079797 GCCTTTATGGCATACTATGTATATATG
1 GCCTTTGTGGCATACTCTGTATATATG
*
91079824 GCCTTTGTGGCATACTCTATATATATG
1 GCCTTTGTGGCATACTCTGTATATATG
* *
91079851 GCCTTTGTGGCGTACTCTGTATATATA
1 GCCTTTGTGGCATACTCTGTATATATG
*
91079878 GCCTTTGTGGCGTACTCTGTA
1 GCCTTTGTGGCATACTCTGTA
91079899 CGGATCACCT
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.40
Consensus pattern (27 bp):
GCCTTTGTGGCATACTCTGTATATATG
Found at i:91079839 original size:54 final size:54
Alignment explanation
Indices: 91079771--91079895 Score: 153
Period size: 54 Copynumber: 2.3 Consensus size: 54
91079761 ATCCTGTCAA
* *
91079771 CCTTTGTGTCATACTCTAAATGA-ACCGCCTTTATGGCATACTATGTATATATGG
1 CCTTTGTGGCATACTCTAAAT-ATACCGCCTTTATGGCATACTATGTATATATAG
* ** * * *
91079825 CCTTTGTGGCATACTCTATATATATGGCCTTTGTGGCGTACTCTGTATATATAG
1 CCTTTGTGGCATACTCTAAATATACCGCCTTTATGGCATACTATGTATATATAG
*
91079879 CCTTTGTGGCGTACTCT
1 CCTTTGTGGCATACTCT
91079896 GTACGGATCA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.02
54 60 0.98
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (54 bp):
CCTTTGTGGCATACTCTAAATATACCGCCTTTATGGCATACTATGTATATATAG
Found at i:91079909 original size:27 final size:27
Alignment explanation
Indices: 91079797--91079914 Score: 94
Period size: 27 Copynumber: 4.4 Consensus size: 27
91079787 TAAATGAACC
* * * * * *
91079797 GCCTTTATGGCATACTATGTATATATG
1 GCCTTTGTGGCGTACTCTGTACAGATA
* * * * *
91079824 GCCTTTGTGGCATACTCTATATATATG
1 GCCTTTGTGGCGTACTCTGTACAGATA
* *
91079851 GCCTTTGTGGCGTACTCTGTATATATA
1 GCCTTTGTGGCGTACTCTGTACAGATA
*
91079878 GCCTTTGTGGCGTACTCTGTACGGATCA
1 GCCTTTGTGGCGTACTCTGTACAGAT-A
91079906 -CCTTTGTGG
1 GCCTTTGTGG
91079915 TGTATTTTGT
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 80 0.99
28 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (27 bp):
GCCTTTGTGGCGTACTCTGTACAGATA
Found at i:91079910 original size:54 final size:54
Alignment explanation
Indices: 91079798--91079914 Score: 135
Period size: 54 Copynumber: 2.2 Consensus size: 54
91079788 AAATGAACCG
* * * * **
91079798 CCTTTATGGCATACTATGTATATATGGCCTTTGTGGCATACTCTATATATATGG
1 CCTTTGTGGCATACTATGTATATATAGCCTTTGTGGCATACTCTATACAGATCA
* * * * *
91079852 CCTTTGTGGCGTACTCTGTATATATAGCCTTTGTGGCGTACTCTGTACGGATCA
1 CCTTTGTGGCATACTATGTATATATAGCCTTTGTGGCATACTCTATACAGATCA
91079906 CCTTTGTGG
1 CCTTTGTGG
91079915 TGTATTTTGT
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (54 bp):
CCTTTGTGGCATACTATGTATATATAGCCTTTGTGGCATACTCTATACAGATCA
Found at i:91080769 original size:10 final size:10
Alignment explanation
Indices: 91080756--91080803 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
91080746 AACATACATT
91080756 TCATAAATTA
1 TCATAAATTA
*
91080766 TCATAAACATA
1 TCATAAA-TTA
*
91080777 TACATACATT-
1 T-CATAAATTA
91080787 TCATAAATTA
1 TCATAAATTA
91080797 TCATAAA
1 TCATAAA
91080804 CATATAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
9 7 0.23
10 15 0.48
11 4 0.13
12 5 0.16
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (10 bp):
TCATAAATTA
Found at i:91080782 original size:31 final size:31
Alignment explanation
Indices: 91080741--91080809 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
91080731 CTAACAGAAC
*
91080741 ACATAAACATACATTTCATAAATTATCATAA
1 ACATATACATACATTTCATAAATTATCATAA
91080772 ACATATACATACATTTCATAAATTATCATAA
1 ACATATACATACATTTCATAAATTATCATAA
91080803 ACATATA
1 ACATATA
91080810 ATAAATAATC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (31 bp):
ACATATACATACATTTCATAAATTATCATAA
Found at i:91090196 original size:55 final size:53
Alignment explanation
Indices: 91090112--91090353 Score: 208
Period size: 55 Copynumber: 4.6 Consensus size: 53
91090102 AGGGTTTAAG
*
91090112 GATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGAAAA
1 GATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGAAAA
* * ** * *
91090167 GATACCATGTAAGACCATGTCAAGACATGGCATTAATAAGTTACTATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGAAAA
* * * * * *
91090222 GGT-CCTATGTAAAACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGCAAA
1 GATACC-ATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGAAAA
* * * *
91090275 GATACCATGTAAGACCATGTCGAGACATGGAAATGGTAAGTTTC--A--AAAG
1 GATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGAAAA
* * *
91090324 GATACCACGTAAGACCATGACAAGTCATGG
1 GATACCATGTAAGACCATGCCAAGACATGG
91090354 CAACGGTAAG
Statistics
Matches: 152, Mismatches: 29, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
49 28 0.18
51 1 0.01
52 1 0.01
53 41 0.27
54 14 0.09
55 67 0.44
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGAAAA
Found at i:91090577 original size:16 final size:16
Alignment explanation
Indices: 91090556--91090586 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
91090546 ATAAACTTGA
91090556 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
91090572 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
91090587 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:91098416 original size:192 final size:192
Alignment explanation
Indices: 91098085--91098475 Score: 701
Period size: 192 Copynumber: 2.0 Consensus size: 192
91098075 GGCTTAGGTC
91098085 GTGGGCCCCACACGGATAAACCACATGGATGTGTAGAGTTTTGTGGGCTAGGCTGTGTAGATCAC
1 GTGGGCCCCACACGGATAAACCACATGGATGTGTAGAGTTTTGTGGGCTAGGCTGTGTAGATCAC
*
91098150 ACAGCCAAGGTCATTATTGGGTTTAATGGGCTACACGGGCGTGTGGGCCAACATGGGCCATATTG
66 ACAGCCAAGGTCATTATTGGGTTTAATGGGCTACACGGACGTGTGGGCCAACATGGGCCATATTG
* *
91098215 TAGGCTTTGGGCCCATTTCCACTGTTTGACTGCTAAGGTCGCATGGGTCGCCTAAGACGGCT
131 TAAGCTTTGGGCCCATTTCCACTGTTTGACTGCTAAGGTCGCATGGGTCGCCTAAGACGACT
* *
91098277 GTGGGCCCCATACGGGTAAACCACATGGATGTGTAGAGTTTTGTGGGCTAGGCTGTGTAGATCAC
1 GTGGGCCCCACACGGATAAACCACATGGATGTGTAGAGTTTTGTGGGCTAGGCTGTGTAGATCAC
* *
91098342 ACAGCCAAGGTCATTATTGGGTTTAATGGGCTACACGGACGTGTGGGCCGACATGGGCCGTATTG
66 ACAGCCAAGGTCATTATTGGGTTTAATGGGCTACACGGACGTGTGGGCCAACATGGGCCATATTG
* *
91098407 TAAGCTTTGGTCCCATTTCCACTGTTTGACTGCTAAGGTCGCATGGGTCGCCTTAGACGACT
131 TAAGCTTTGGGCCCATTTCCACTGTTTGACTGCTAAGGTCGCATGGGTCGCCTAAGACGACT
91098469 GTGGGCC
1 GTGGGCC
91098476 TACTGATGGG
Statistics
Matches: 190, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
192 190 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (192 bp):
GTGGGCCCCACACGGATAAACCACATGGATGTGTAGAGTTTTGTGGGCTAGGCTGTGTAGATCAC
ACAGCCAAGGTCATTATTGGGTTTAATGGGCTACACGGACGTGTGGGCCAACATGGGCCATATTG
TAAGCTTTGGGCCCATTTCCACTGTTTGACTGCTAAGGTCGCATGGGTCGCCTAAGACGACT
Found at i:91098666 original size:21 final size:21
Alignment explanation
Indices: 91098637--91098677 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
91098627 AAGTGTACTG
*
91098637 TACTAGCAGCTCTGCTGCAAT
1 TACTAGCAGCTCTACTGCAAT
*
91098658 TACTGGCAGCTCTACTGCAA
1 TACTAGCAGCTCTACTGCAA
91098678 ACACTGATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (21 bp):
TACTAGCAGCTCTACTGCAAT
Found at i:91098683 original size:21 final size:21
Alignment explanation
Indices: 91098642--91098683 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
91098632 TACTGTACTA
* **
91098642 GCAGCTCTGCTGCAATTACTG
1 GCAGCTCTACTGCAAACACTG
91098663 GCAGCTCTACTGCAAACACTG
1 GCAGCTCTACTGCAAACACTG
91098684 ATTAATGCCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (21 bp):
GCAGCTCTACTGCAAACACTG
Found at i:91098862 original size:34 final size:34
Alignment explanation
Indices: 91098819--91098888 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
91098809 TTTCTGATAC
91098819 TGTTATTGTAATGGGCTAAAGCCCACACTAATAT
1 TGTTATTGTAATGGGCTAAAGCCCACACTAATAT
* * *
91098853 TGTTATTGTAATGGGCTAAGGCCTACACTGATAT
1 TGTTATTGTAATGGGCTAAAGCCCACACTAATAT
91098887 TG
1 TG
91098889 GACTGTAACT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (34 bp):
TGTTATTGTAATGGGCTAAAGCCCACACTAATAT
Found at i:91101066 original size:10 final size:9
Alignment explanation
Indices: 91101043--91101099 Score: 51
Period size: 9 Copynumber: 6.1 Consensus size: 9
91101033 CCTCTTCCCC
*
91101043 TTTCTTTGT
1 TTTCTTTTT
91101052 TTTCTTTTT
1 TTTCTTTTT
91101061 TGTTCTTTCTT
1 T-TTCTTT-TT
*
91101072 TTTCTTCTT
1 TTTCTTTTT
* *
91101081 CTTCTTCTT
1 TTTCTTTTT
*
91101090 CTTCTTTTT
1 TTTCTTTTT
91101099 T
1 T
91101100 GAAAATGGTT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
9 27 0.66
10 11 0.27
11 3 0.07
ACGTcount: A:0.00, C:0.19, G:0.04, T:0.77
Consensus pattern (9 bp):
TTTCTTTTT
Found at i:91106272 original size:44 final size:42
Alignment explanation
Indices: 91106213--91106332 Score: 159
Period size: 44 Copynumber: 2.8 Consensus size: 42
91106203 CATTTATTTT
* * * *
91106213 AAAAAAGGCCGCTAAAAGCCATGACTTTCAGCGGCGTTTGTAA
1 AAAAAAAGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGT-A
* *
91106256 AAATAAAAGCCGCTAAAAGTCATGGTTTTTAGAGGCGTTTGTA
1 AAA-AAAAGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTA
*
91106299 AAAAAACGCCGCTAAAAGTCATGGCTTTTAGCGG
1 AAAAAAAGCCGCTAAAAGTCATGGCTTTTAGCGG
91106333 ACTTTTAACG
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 28 0.42
43 7 0.10
44 32 0.48
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.24
Consensus pattern (42 bp):
AAAAAAAGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTA
Found at i:91106499 original size:31 final size:31
Alignment explanation
Indices: 91106464--91106530 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
91106454 CTTCCTGCAT
* *
91106464 TAAAATCCAACCAAATACAATAAATATAGCA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
* * * *
91106495 TAAAATTCAGCCAAAAACAGCAAATTTAGCA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
91106526 TAAAA
1 TAAAA
91106531 AAATACAACC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.57, C:0.18, G:0.06, T:0.19
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAGCA
Found at i:91106806 original size:21 final size:21
Alignment explanation
Indices: 91106782--91106857 Score: 84
Period size: 21 Copynumber: 3.6 Consensus size: 21
91106772 GCTGCCATCA
91106782 CTGCTGCCTCTGCCTCCCTTG
1 CTGCTGCCTCTGCCTCCCTTG
* * *
91106803 CTGCTGTCGCTGCCTCCCTCG
1 CTGCTGCCTCTGCCTCCCTTG
*
91106824 CTACTGCCGT-TGCCTCCCTCT-
1 CTGCTGCC-TCTGCCTCCCT-TG
91106845 CTGCTGCCTCTGC
1 CTGCTGCCTCTGC
91106858 TTTAAGTTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
20 1 0.02
21 43 0.98
ACGTcount: A:0.01, C:0.47, G:0.20, T:0.32
Consensus pattern (21 bp):
CTGCTGCCTCTGCCTCCCTTG
Found at i:91107294 original size:13 final size:14
Alignment explanation
Indices: 91107269--91107297 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91107259 TGATGAATTG
91107269 AATTAAACAATTAT
1 AATTAAACAATTAT
91107283 AATTAAAC-ATTAT
1 AATTAAACAATTAT
91107296 AA
1 AA
91107298 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:91107833 original size:22 final size:22
Alignment explanation
Indices: 91107785--91107825 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
91107775 TTTCCTAAAA
91107785 TATTG-TTTTTTAAAGTGCTAC
1 TATTGTTTTTTTAAAGTGCTAC
91107806 TATTGTTTTTTTAAAGTGCT
1 TATTGTTTTTTTAAAGTGCT
91107826 TTTATTGTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.22, C:0.07, G:0.15, T:0.56
Consensus pattern (22 bp):
TATTGTTTTTTTAAAGTGCTAC
Found at i:91112318 original size:9 final size:9
Alignment explanation
Indices: 91112292--91112404 Score: 65
Period size: 9 Copynumber: 12.8 Consensus size: 9
91112282 TAAATTTCGT
*
91112292 AGTTAAGTA
1 AGTTATGTA
91112301 AGCTT-TGTA
1 AG-TTATGTA
91112310 AGTTATGTA
1 AGTTATGTA
*
91112319 AGTTATGTT
1 AGTTATGTA
* *
91112328 A-TGATATA
1 AGTTATGTA
*
91112336 CATTTATGTA
1 -AGTTATGTA
*
91112346 AGGTATGTA
1 AGTTATGTA
91112355 AGTTATGATA
1 AGTTATG-TA
* * *
91112365 TGATATAT-
1 AGTTATGTA
*
91112373 ATTTATGT-
1 AGTTATGTA
91112381 A-TTATGTA
1 AGTTATGTA
*
91112389 AGTTGTGTA
1 AGTTATGTA
91112398 AGTTATG
1 AGTTATG
91112405 ATATGATATA
Statistics
Matches: 78, Mismatches: 19, Indels: 14
0.70 0.17 0.13
Matches are distributed among these distances:
7 6 0.08
8 12 0.15
9 47 0.60
10 13 0.17
ACGTcount: A:0.33, C:0.02, G:0.20, T:0.45
Consensus pattern (9 bp):
AGTTATGTA
Found at i:91112346 original size:36 final size:36
Alignment explanation
Indices: 91112306--91112555 Score: 151
Period size: 36 Copynumber: 7.0 Consensus size: 36
91112296 AAGTAAGCTT
*
91112306 TGTAAGTTATGTAAGTTATGTTATGATATACATTTA
1 TGTAAGTTATGTAAGTTATGATATGATATACATTTA
* *
91112342 TGTAAGGTATGTAAGTTATGATATGATATATATTTA
1 TGTAAGTTATGTAAGTTATGATATGATATACATTTA
* * *
91112378 TGT-A-TTATGTAAGTTGTGTAAGTTATGATATGATATATA
1 TGTAAGTTATGTAAGTTATG--A--TATGATAT-ACATTTA
* * * * ** * **
91112417 TTTAAGATATAT-ATTTATG-TATTTTGTA-AGGTA
1 TGTAAGTTATGTAAGTTATGATATGATATACATTTA
* * *
91112450 TATAAGTTATGTAAGTTATTATATGATATATATTTA
1 TGTAAGTTATGTAAGTTATGATATGATATACATTTA
**
91112486 TGTAAGTTAT-T-A--TATGATAT-ATATTTATGTATTA
1 TGTAAGTTATGTAAGTTATGATATGATA--TACAT-TTA
* * *
91112520 TGTAAGTTTTGTAAGTTATTATATGATATATATTTA
1 TGTAAGTTATGTAAGTTATGATATGATATACATTTA
91112556 ACATTAAGAT
Statistics
Matches: 164, Mismatches: 32, Indels: 36
0.71 0.14 0.16
Matches are distributed among these distances:
31 3 0.02
32 7 0.04
33 16 0.10
34 31 0.19
35 14 0.09
36 53 0.32
37 4 0.02
38 15 0.09
39 11 0.07
40 6 0.04
41 4 0.02
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (36 bp):
TGTAAGTTATGTAAGTTATGATATGATATACATTTA
Found at i:91112398 original size:43 final size:43
Alignment explanation
Indices: 91112339--91112555 Score: 204
Period size: 43 Copynumber: 4.9 Consensus size: 43
91112329 TGATATACAT
*
91112339 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTA
* *
91112382 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTAAGATA
1 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATG-TA
* * * * * * * *
91112426 TATATTTATGTATTTTGTAAGGTAT-ATAAGTTATGTAAGTTAT-TA
1 T-TATGTAAG--TTATGTAAGTTATGATATGATATAT-ATTTATGTA
* * *
91112471 TATGATATATATTTATGTAAGTTATTATATGATATATATTTATGTA
1 T-T-ATGTA-AGTTATGTAAGTTATGATATGATATATATTTATGTA
* *
91112517 TTATGTAAGTTTTGTAAGTTATTATATGATATATATTTA
1 TTATGTAAGTTATGTAAGTTATGATATGATATATATTTA
91112556 ACATTAAGAT
Statistics
Matches: 141, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
43 68 0.48
44 7 0.05
45 28 0.20
46 23 0.16
47 15 0.11
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (43 bp):
TTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTA
Found at i:91112427 original size:13 final size:13
Alignment explanation
Indices: 91112409--91112433 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91112399 GTTATGATAT
91112409 GATATATATTTAA
1 GATATATATTTAA
91112422 GATATATATTTA
1 GATATATATTTA
91112434 TGTATTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
GATATATATTTAA
Found at i:91112432 original size:56 final size:52
Alignment explanation
Indices: 91112344--91112489 Score: 166
Period size: 56 Copynumber: 2.7 Consensus size: 52
91112334 TACATTTATG
* * * * * *
91112344 TAAGGTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTGTG
1 TAAGTTATGTAAGTTATTATAAGATATATATTTATGTATTATGTAAGGTATA
* * *
91112396 TAAGTTATGATATGATATATATTTAAGATATATATTTATGTATTTTGTAAGGTATA
1 TAAGTTATG-TAAG-T-TAT-TATAAGATATATATTTATGTATTATGTAAGGTATA
*
91112452 TAAGTTATGTAAGTTATTATATGATATATATTTATGTA
1 TAAGTTATGTAAGTTATTATAAGATATATATTTATGTA
91112490 AGTTATTATA
Statistics
Matches: 78, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
52 27 0.35
53 6 0.08
54 2 0.03
55 6 0.08
56 37 0.47
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (52 bp):
TAAGTTATGTAAGTTATTATAAGATATATATTTATGTATTATGTAAGGTATA
Found at i:91112518 original size:22 final size:25
Alignment explanation
Indices: 91112463--91112555 Score: 87
Period size: 27 Copynumber: 3.9 Consensus size: 25
91112453 AAGTTATGTA
91112463 AGTTATTATATGATATATATTTATGT
1 AGTTATTATATGATATATATTTA-GT
91112489 AAGTTATTATATGATATATATTTA-T
1 -AGTTATTATATGATATATATTTAGT
91112514 -G-TA-T-TATG-TA-AGT-TTT-GT
1 AGTTATTATATGATATA-TATTTAGT
91112532 AAGTTATTATATGATATATATTTA
1 -AGTTATTATATGATATATATTTA
91112556 ACATTAAGAT
Statistics
Matches: 55, Mismatches: 0, Indels: 23
0.71 0.00 0.29
Matches are distributed among these distances:
18 5 0.09
19 3 0.05
20 5 0.09
21 3 0.05
22 3 0.05
23 5 0.09
24 3 0.05
25 5 0.09
27 23 0.42
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (25 bp):
AGTTATTATATGATATATATTTAGT
Found at i:91112533 original size:70 final size:70
Alignment explanation
Indices: 91112349--91112555 Score: 266
Period size: 70 Copynumber: 3.0 Consensus size: 70
91112339 TTATGTAAGG
* * *
91112349 TATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTGTGTAAGTTATGATATGATAT
1 TATGTAAGTTATTATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATTATATGATAT
91112414 ATA--
66 ATATT
* * * * *
91112417 T-T-TAAGATA-TATAT-TTATGTATTT-TGTAAGGTATATAAGTTATGTAAGTTATTATATGAT
1 TATGTAAGTTATTATATGATATATATTTATGT-A-TTATGTAAGTTATGTAAGTTATTATATGAT
91112477 ATATATT
64 ATATATT
*
91112484 TATGTAAGTTATTATATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATTATATGATAT
1 TATGTAAGTTATTATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATTATATGATAT
91112549 ATATT
66 ATATT
91112554 TA
1 TA
91112556 ACATTAAGAT
Statistics
Matches: 116, Mismatches: 14, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
63 3 0.03
64 9 0.08
65 35 0.30
66 6 0.05
67 2 0.02
68 2 0.02
69 6 0.05
70 41 0.35
71 9 0.08
72 3 0.03
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.50
Consensus pattern (70 bp):
TATGTAAGTTATTATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATTATATGATAT
ATATT
Found at i:91115052 original size:19 final size:20
Alignment explanation
Indices: 91115018--91115056 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
91115008 AAGAAATTTG
*
91115018 TCTAATATGATTAAAAATAT
1 TCTAAAATGATTAAAAATAT
91115038 TCTAAAATG-TTAAAAATAT
1 TCTAAAATGATTAAAAATAT
91115057 ATATGTTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (20 bp):
TCTAAAATGATTAAAAATAT
Found at i:91116328 original size:21 final size:22
Alignment explanation
Indices: 91116302--91116348 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
91116292 CTCTGCTCAA
*
91116302 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
91116323 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
91116345 ACTC
1 ACTC
91116349 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:91120846 original size:13 final size:13
Alignment explanation
Indices: 91120828--91120862 Score: 61
Period size: 13 Copynumber: 2.6 Consensus size: 13
91120818 TTATCTCTTA
91120828 AAAAATTTAATCT
1 AAAAATTTAATCT
91120841 AAAAATTTAATCT
1 AAAAATTTAATCT
91120854 AAATAATTT
1 AAA-AATTT
91120863 TATTTTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.76
14 5 0.24
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (13 bp):
AAAAATTTAATCT
Found at i:91121124 original size:8 final size:7
Alignment explanation
Indices: 91121014--91121211 Score: 59
Period size: 7 Copynumber: 28.3 Consensus size: 7
91121004 ACCTTAAAAT
91121014 CCTAAAC
1 CCTAAAC
*
91121021 CCTATA-
1 CCTAAAC
*
91121027 CATAAAC
1 CCTAAAC
91121034 CCTAAAC
1 CCTAAAC
*
91121041 CCTGAAC
1 CCTAAAC
*
91121048 AC-ATAAC
1 CCTA-AAC
* *
91121055 CATTAATC
1 C-CTAAAC
91121063 CCTAAAC
1 CCTAAAC
*
91121070 CTTAAAC
1 CCTAAAC
*
91121077 CCT-AGC
1 CCTAAAC
91121083 CCTTAAAC
1 CC-TAAAC
** **
91121091 TATAATT
1 CCTAAAC
*
91121098 CATAAAC
1 CCTAAAC
*
91121105 CTTAAAC
1 CCTAAAC
91121112 CCTAAACC
1 CCTAAA-C
*
91121120 CCT-AAT
1 CCTAAAC
* *
91121126 CTTATAC
1 CCTAAAC
91121133 CCTAAAC
1 CCTAAAC
*
91121140 CATAAAC
1 CCTAAAC
* *
91121147 CTTATA-
1 CCTAAAC
*
91121153 CATAAAC
1 CCTAAAC
91121160 CCTAAAC
1 CCTAAAC
*
91121167 CCTAAGCC
1 CCTAA-AC
91121175 CCT-AAC
1 CCTAAAC
91121181 CCGT-AAC
1 CC-TAAAC
*
91121188 CCTTAAC
1 CCTAAAC
*
91121195 CATTAAAC
1 C-CTAAAC
*
91121203 CTTAAAC
1 CCTAAAC
91121210 CC
1 CC
91121212 CAGCCCTTAA
Statistics
Matches: 136, Mismatches: 42, Indels: 26
0.67 0.21 0.13
Matches are distributed among these distances:
6 18 0.13
7 99 0.73
8 18 0.13
9 1 0.01
ACGTcount: A:0.40, C:0.35, G:0.02, T:0.23
Consensus pattern (7 bp):
CCTAAAC
Found at i:91121150 original size:21 final size:21
Alignment explanation
Indices: 91121098--91121167 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
91121088 AACTATAATT
*
91121098 CATAAACCTTAAACCCTAAACC
1 CATAAACCTTATACCCTAAA-C
* *
91121120 CCT-AATCTTATACCCTAAAC
1 CATAAACCTTATACCCTAAAC
*
91121140 CATAAACCTTATA-CATAAAC
1 CATAAACCTTATACCCTAAAC
*
91121160 CCTAAACC
1 CATAAACC
91121168 CTAAGCCCCT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
20 16 0.40
21 22 0.55
22 2 0.05
ACGTcount: A:0.43, C:0.34, G:0.00, T:0.23
Consensus pattern (21 bp):
CATAAACCTTATACCCTAAAC
Found at i:91121178 original size:42 final size:42
Alignment explanation
Indices: 91121132--91121228 Score: 108
Period size: 42 Copynumber: 2.3 Consensus size: 42
91121122 TAATCTTATA
91121132 CCCTAAACCATAAACCTTATA-CA-TAAACCCTAAACCCTAAGC
1 CCCTAAACCATAAACCTTA-ACCATTAAACCCTAAACCC-AAGC
* * * * *
91121174 CCCTAACCCGTAACCCTTAACCATTAAACCTTAAACCCCAGC
1 CCCTAAACCATAAACCTTAACCATTAAACCCTAAACCCAAGC
*
91121216 CCTTAAACCATAA
1 CCCTAAACCATAA
91121229 TTCACAAACA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.02
42 31 0.69
43 13 0.29
ACGTcount: A:0.39, C:0.38, G:0.03, T:0.20
Consensus pattern (42 bp):
CCCTAAACCATAAACCTTAACCATTAAACCCTAAACCCAAGC
Found at i:91121444 original size:14 final size:14
Alignment explanation
Indices: 91121417--91121463 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
91121407 ATCTAAACCC
*
91121417 TAAACCCATAATCCT
1 TAAACCC-TAATCCA
*
91121432 TAATCCCTAATCCA
1 TAAACCCTAATCCA
91121446 TAAACCCTGAAT-CA
1 TAAACCCT-AATCCA
91121460 TAAA
1 TAAA
91121464 ACATAAACTC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 19 0.68
15 9 0.32
ACGTcount: A:0.43, C:0.30, G:0.02, T:0.26
Consensus pattern (14 bp):
TAAACCCTAATCCA
Found at i:91122038 original size:106 final size:107
Alignment explanation
Indices: 91121852--91122136 Score: 321
Period size: 106 Copynumber: 2.7 Consensus size: 107
91121842 AGATGAAAAG
* * *
91121852 ATTTTTTGCGGCGTTTTTAAAGAAAACGCCGCTATAGATCAGAATTTGCGGCGTTTTCTATAAAA
1 ATTTTTTGCGGCGTTTGTAAAGAAAACGCCGCTAAAGATCAGAATTAGCGGCGTTTTCTATAAAA
* * *
91121917 GCGCCACTAAAAGCTCTACACAAGACGACATCGTTTCACAAA
66 GCGCCACTAAAAGCTCTACACAAGACAACACCATTTCACAAA
* * * *
91121959 ATTTTTTGCGGTGTTTGTAAA-AAAACGCCGCTAAATATCAGTATTAGTGGCGTTTT-TCATAAA
1 ATTTTTTGCGGCGTTTGTAAAGAAAACGCCGCTAAAGATCAGAATTAGCGGCGTTTTCT-ATAAA
* * *
91122022 AGCGCCACTAAAAGCTCTACATAAGACAACGCCATTTCACTAA
65 AGCGCCACTAAAAGCTCTACACAAGACAACACCATTTCACAAA
* * * * * * * *
91122065 ATTTTTTGTGGCGTTT-T--TGAAAACGCTGTTATAGATCAGTATTAGCGGAGGTTTCTA-AAAA
1 ATTTTTTGCGGCGTTTGTAAAGAAAACGCCGCTAAAGATCAGAATTAGCGGCGTTTTCTATAAAA
*
91122126 GCGCTACTAAA
66 GCGCCACTAAA
91122137 GGTGTGCATA
Statistics
Matches: 151, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
103 14 0.09
104 29 0.19
105 3 0.02
106 86 0.57
107 19 0.13
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (107 bp):
ATTTTTTGCGGCGTTTGTAAAGAAAACGCCGCTAAAGATCAGAATTAGCGGCGTTTTCTATAAAA
GCGCCACTAAAAGCTCTACACAAGACAACACCATTTCACAAA
Found at i:91124540 original size:20 final size:22
Alignment explanation
Indices: 91124487--91124542 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
91124477 GTAACTACAC
* * *
91124487 CATACTAGAGGCATCATAGATG
1 CATAATAGAGGCACCAAAGATG
*
91124509 CATAACAGAGGCACCAAAG-TG
1 CATAATAGAGGCACCAAAGATG
91124530 CA-AATAGAGGCAC
1 CATAATAGAGGCAC
91124543 AAGTGTGCAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 10 0.34
21 4 0.14
22 15 0.52
ACGTcount: A:0.41, C:0.21, G:0.23, T:0.14
Consensus pattern (22 bp):
CATAATAGAGGCACCAAAGATG
Found at i:91126116 original size:126 final size:127
Alignment explanation
Indices: 91125975--91126209 Score: 343
Period size: 131 Copynumber: 1.8 Consensus size: 127
91125965 TTTAAAAAAT
* *
91125975 AGAAAGTTTAGATTTTAACAAA-TAAAAATCTA-TTTTTT-T-ATTTTAAAGAAAAGATTAAATT
1 AGAAAGTTTAAATTTTAA-AAAGTAAAAATCTATTTTTTTATCATTTTAAAGAAAAGATTAAAAT
*
91126036 TTTAAAACAAAGTTTTGATTTTTCTTTCAACTATTTCAAAGTAAAAAATACTGTTTTTTTTAAAG
65 TTTAAAACAAAGTTTTGATTTTTC-TT-AACTATTTCAAAATAAAAAATACTGTTTTTTTTAAAG
* *
91126101 AGAAAGTTTAAATTTTAAAAAGTAAAAATCTATTTTTTTAAGTCATTTTAAAGCAAAGTTTAAAA
1 AGAAAGTTTAAATTTTAAAAAGTAAAAATCTATTTTTTT-A-TCATTTTAAAGAAAAGATTAAAA
*
91126166 TTTTAAAACAAAGTTTTGTTTTTTCTTAACTATTTCAAAATAAA
64 TTTTAAAACAAAGTTTTGATTTTTCTTAACTATTTCAAAATAAA
91126210 GTTTTGATTT
Statistics
Matches: 97, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
125 3 0.03
126 27 0.28
127 6 0.06
129 16 0.16
130 3 0.03
131 42 0.43
ACGTcount: A:0.43, C:0.06, G:0.08, T:0.43
Consensus pattern (127 bp):
AGAAAGTTTAAATTTTAAAAAGTAAAAATCTATTTTTTTATCATTTTAAAGAAAAGATTAAAATT
TTAAAACAAAGTTTTGATTTTTCTTAACTATTTCAAAATAAAAAATACTGTTTTTTTTAAAG
Found at i:91135945 original size:42 final size:42
Alignment explanation
Indices: 91135882--91136233 Score: 470
Period size: 42 Copynumber: 8.4 Consensus size: 42
91135872 AAAGAGAACA
* * *
91135882 TTCATTGCATTTAAAGGCCCAGATGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTCACTT
*
91135924 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTTCATTCACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTCACTT
* * * * *
91135966 TTCATTGCATTTAGAGGCCTAGGTGTTGAGGTTCATTCATTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTCACTT
* *
91136008 TTCATTGCATTTAGAGACCCAGGTGTGGAGGGCCATTGACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTCACTT
* * * * *
91136050 TTCATTGCATTTAGAGGCCCAAGTATAGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTCACTT
* * * *
91136092 TTCATTGCTTTTAGAGAACCAAGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTCACTT
* **
91136134 TTCATTGCATTTAGAGGCCCAGGTGTTAAGGTCCATTCACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTCACTT
* * *
91136176 TTCTTTGCATTTAGAGACCTAGGTGTGGAGGTCCATTGACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTCACTT
91136218 TTCATTGCATTTAGAG
1 TTCATTGCATTTAGAG
91136234 CGGTCCATTT
Statistics
Matches: 270, Mismatches: 40, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 270 1.00
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (42 bp):
TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTCACTT
Found at i:91136023 original size:84 final size:84
Alignment explanation
Indices: 91135882--91136233 Score: 524
Period size: 84 Copynumber: 4.2 Consensus size: 84
91135872 AAAGAGAACA
* * *
91135882 TTCATTGCATTTAAAGGCCCAGATGTGGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAGG
1 TTCATTGCATTTAGAGGCCCAGGTGTTGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAGG
* *
91135947 TGTGGAGGTTCATTCACTT
66 TGTGGAGGTCCATTGACTT
* * *
91135966 TTCATTGCATTTAGAGGCCTAGGTGTTGAGGTTCATTCATTTTTCATTGCATTTAGAGACCCAGG
1 TTCATTGCATTTAGAGGCCCAGGTGTTGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAGG
*
91136031 TGTGGAGGGCCATTGACTT
66 TGTGGAGGTCCATTGACTT
* * * * * * *
91136050 TTCATTGCATTTAGAGGCCCAAGTATAGAGGTCCATTTACTTTTCATTGCTTTTAGAGAACCAAG
1 TTCATTGCATTTAGAGGCCCAGGTGTTGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAGG
*
91136115 TGTGGAGGTCCATTTACTT
66 TGTGGAGGTCCATTGACTT
* * *
91136134 TTCATTGCATTTAGAGGCCCAGGTGTTAAGGTCCATTCACTTTTCTTTGCATTTAGAGACCTAGG
1 TTCATTGCATTTAGAGGCCCAGGTGTTGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAGG
91136199 TGTGGAGGTCCATTGACTT
66 TGTGGAGGTCCATTGACTT
91136218 TTCATTGCATTTAGAG
1 TTCATTGCATTTAGAG
91136234 CGGTCCATTT
Statistics
Matches: 236, Mismatches: 32, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
84 236 1.00
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (84 bp):
TTCATTGCATTTAGAGGCCCAGGTGTTGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAGG
TGTGGAGGTCCATTGACTT
Found at i:91136278 original size:16 final size:16
Alignment explanation
Indices: 91136257--91136287 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
91136247 TTTCTAGTTT
91136257 ACTTTTCATTGCATTG
1 ACTTTTCATTGCATTG
91136273 ACTTTTCATTGCATT
1 ACTTTTCATTGCATT
91136288 TAGAGGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.19, G:0.10, T:0.52
Consensus pattern (16 bp):
ACTTTTCATTGCATTG
Found at i:91137333 original size:156 final size:150
Alignment explanation
Indices: 91137044--91137442 Score: 454
Period size: 150 Copynumber: 2.6 Consensus size: 150
91137034 TTTAAAAAAA
* * *
91137044 AAAGAGAAAGTTTAGTTTTT-AACAAATAAAAATCTTTTTTTTTGTGATTTTAAAGGAAATTTTA
1 AAAGAGAAAGTTTAATTTTTGAA-AAATAAAAATCTTTTTTTTTGTCATTTTAAAGGAAAGTTTA
* * * *
91137108 AATTTTTAAAACAAAGTTTTGA--TTTTTTTTCAACTATTTCAAAGTAATAACTTTAATCTTTTA
65 AATTTTTAAAACAAAGTTTTGATTTTTTTTTTCAACTACTACAAAATAATAACTTTAATCATTTA
*
91137171 AGAAAAATAGTGTTTAAAAATAATAAT
130 AGAAAAATAGAGTTT-----T-ATAAT
* *
91137198 AAAGAGAAAGTTTAATTTTTGAAAATTAAAAATTTGTTTTTTTTGGTCATTTTAAAGGAAAGTTT
1 AAAGAGAAAGTTTAATTTTTGAAAAATAAAAATCT-TTTTTTTT-GTCATTTTAAAGGAAAGTTT
*
91137263 AAATTTTTAAAACAAAGTTTTGATTTTTGTTTTTTAACTACTACAAAATAA-AAGCTTTAAT-AT
64 AAATTTTTAAAACAAAGTTTTGATTTTT-TTTTTCAACTACTACAAAATAATAA-CTTTAATCAT
* **
91137326 TTAA-AAAAATAGAGTTTTTTTTT
127 TTAAGAAAAATAGAGTTTTATAAT
* **
91137349 AAA-AAAAAGTTTACA-TTTTGAAAAATAAAAATCTATTTTTTCAAGTCATTTTAAAGGAAAGTT
1 AAAGAGAAAGTTTA-ATTTTTGAAAAATAAAAATCT-TTTTTT-TTGTCATTTTAAAGGAAAGTT
*
91137412 TAAAATTTTAAAACAAAGTTTTGATTTTTTT
63 TAAATTTTTAAAACAAAGTTTTGATTTTTTT
91137443 AACTATTTTG
Statistics
Matches: 215, Mismatches: 21, Indels: 23
0.83 0.08 0.09
Matches are distributed among these distances:
149 2 0.01
150 79 0.37
151 6 0.03
152 1 0.00
154 29 0.13
155 10 0.05
156 41 0.19
157 12 0.06
158 10 0.05
159 25 0.12
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.44
Consensus pattern (150 bp):
AAAGAGAAAGTTTAATTTTTGAAAAATAAAAATCTTTTTTTTTGTCATTTTAAAGGAAAGTTTAA
ATTTTTAAAACAAAGTTTTGATTTTTTTTTTCAACTACTACAAAATAATAACTTTAATCATTTAA
GAAAAATAGAGTTTTATAAT
Found at i:91137945 original size:25 final size:24
Alignment explanation
Indices: 91137917--91137963 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
91137907 TCACTAGCAT
91137917 TTATACA-TTATATATTTAATGTTAC
1 TTATACACTT-TAT-TTTAATGTTAC
*
91137942 TTATGCACTTTATTTTAATGTT
1 TTATACACTTTATTTTAATGTT
91137964 TTATATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 9 0.45
26 2 0.10
ACGTcount: A:0.30, C:0.09, G:0.06, T:0.55
Consensus pattern (24 bp):
TTATACACTTTATTTTAATGTTAC
Found at i:91140817 original size:20 final size:20
Alignment explanation
Indices: 91140792--91140837 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
91140782 GTTGGGCATT
91140792 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
91140812 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
91140831 GCCCATA
1 GCCCATA
91140838 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:91140846 original size:19 final size:20
Alignment explanation
Indices: 91140804--91140847 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
91140794 CCATATTAAC
** *
91140804 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
91140824 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
91140843 ACAGT
1 ACAGT
91140848 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:91144771 original size:61 final size:63
Alignment explanation
Indices: 91144638--91144771 Score: 152
Period size: 60 Copynumber: 2.2 Consensus size: 63
91144628 ACTGGACCTA
*
91144638 AGCCCTATT-CAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAATATGGGCCAT
1 AGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATATGGGCCAT
* * * * * * *
91144700 AGCCC-CTTACAG-TATCAGAG-TATACTGGGCC-TAGCCCATATTAGTGTCAATCTGGGCCGT
1 AGCCCTATTACAGAAATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATCAATATGGGCCAT
91144760 AGCCCTATTACA
1 AGCCCTATTACA
91144772 AGTCAAGATA
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
60 30 0.50
61 22 0.37
62 8 0.13
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (63 bp):
AGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATATGGGCCAT
Found at i:91144776 original size:28 final size:27
Alignment explanation
Indices: 91144724--91144777 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
91144714 TCAGAGTATA
**
91144724 CTGGGCCTAGCCCATATTAGTGTCAAT
1 CTGGGCCTAGCCCATATTAAAGTCAAT
91144751 CTGGGCCGTAGCCC-TATTACAAGTCAA
1 CTGGGCC-TAGCCCATATTA-AAGTCAA
91144778 GATATGTTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 12 0.52
28 11 0.48
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATTAAAGTCAAT
Found at i:91144818 original size:20 final size:20
Alignment explanation
Indices: 91144793--91144838 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
91144783 GTTGGGCATT
91144793 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
91144813 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
91144832 GCCCATA
1 GCCCATA
91144839 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:91144847 original size:19 final size:20
Alignment explanation
Indices: 91144805--91144848 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
91144795 CCATATTAAC
** *
91144805 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
91144825 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
91144844 ACAGT
1 ACAGT
91144849 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:91149277 original size:12 final size:12
Alignment explanation
Indices: 91149262--91149295 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
91149252 CAGTAAAAGA
*
91149262 ATGATATGTATC
1 ATGACATGTATC
91149274 ATGACATGTATC
1 ATGACATGTATC
91149286 ATGACATGTA
1 ATGACATGTA
91149296 CATATATGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (12 bp):
ATGACATGTATC
Found at i:91160368 original size:45 final size:45
Alignment explanation
Indices: 91160304--91160417 Score: 138
Period size: 45 Copynumber: 2.5 Consensus size: 45
91160294 TTATCATAAA
* * * *
91160304 CATGACGAAAACGAGTAAGACTATAGCCGAAAGACGCTATGGCAT
1 CATGACAAAAACAAGTAAGACCATAGCCAAAAGACGCTATGGCAT
* **
91160349 CATGATAAAAACAAGTAAGACCATAGTTAAAAGACGCTATGGCAT
1 CATGACAAAAACAAGTAAGACCATAGCCAAAAGACGCTATGGCAT
***
91160394 CATGACAAAAGTGAGTAAGACCAT
1 CATGACAAAAACAAGTAAGACCAT
91160418 GGCTGGAAGG
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 58 1.00
ACGTcount: A:0.44, C:0.18, G:0.21, T:0.18
Consensus pattern (45 bp):
CATGACAAAAACAAGTAAGACCATAGCCAAAAGACGCTATGGCAT
Found at i:91162890 original size:13 final size:13
Alignment explanation
Indices: 91162850--91162890 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
91162840 AAAACGCCGC
91162850 TAAAAACAGAGCA
1 TAAAAACAGAGCA
**
91162863 -AAAAACACCGC-
1 TAAAAACAGAGCA
91162874 TAAAAACAGAGCA
1 TAAAAACAGAGCA
91162887 TAAA
1 TAAA
91162891 CCGCCGCTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
12 18 0.82
13 4 0.18
ACGTcount: A:0.61, C:0.20, G:0.12, T:0.07
Consensus pattern (13 bp):
TAAAAACAGAGCA
Found at i:91162903 original size:25 final size:24
Alignment explanation
Indices: 91162840--91162912 Score: 110
Period size: 24 Copynumber: 3.0 Consensus size: 24
91162830 ACGTTTTTGG
*
91162840 AAAACGCCGCTAAAAACAGAGCAA
1 AAAACGCCGCTAAAAACAGAGCAT
*
91162864 AAAACACCGCTAAAAACAGAGCAT
1 AAAACGCCGCTAAAAACAGAGCAT
*
91162888 AAACCGCCGCTAAAAACCAGAGCAT
1 AAAACGCCGCTAAAAA-CAGAGCAT
91162913 TAGCGACGCT
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
24 36 0.82
25 8 0.18
ACGTcount: A:0.51, C:0.27, G:0.15, T:0.07
Consensus pattern (24 bp):
AAAACGCCGCTAAAAACAGAGCAT
Found at i:91162939 original size:41 final size:41
Alignment explanation
Indices: 91162887--91163066 Score: 252
Period size: 41 Copynumber: 4.4 Consensus size: 41
91162877 AAACAGAGCA
* *
91162887 TAAACCGCCGCTAAAAACCAGAGCATTAGCGACGCTTTCGG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGG
* **
91162928 TAAAACACCGCTAAAAATTAGAGCATTAGCGGCGCTTTCGG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGG
* * * *
91162969 TAAAACGCTGCTAAAAATCGGAGCATTAGCGGCGCTTTCGA
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGG
** *
91163010 TAAAACGCCGCTAAAAACTGGAGCATTAGCGGCACTTTCGG
1 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGG
91163051 TAAAACGCCGCTAAAA
1 TAAAACGCCGCTAAAA
91163067 GTCATATAAC
Statistics
Matches: 124, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 124 1.00
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.19
Consensus pattern (41 bp):
TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGG
Found at i:91163176 original size:54 final size:55
Alignment explanation
Indices: 91163079--91163193 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 55
91163069 CATATAACCC
* * * *
91163079 CTAAAATCCTAAACCCTCAAAAAATCATAAACACTAATCTATAATCCTTAAAACA
1 CTAAACTCCTAAACCCTCAAAAAATCATAAACACTAAACTATAACCCCTAAAACA
* * * *
91163134 CTAAACTCCTAAA-CCTTAAAAAATCTTAAACCCTAAACTATAACCCCTAAAATA
1 CTAAACTCCTAAACCCTCAAAAAATCATAAACACTAAACTATAACCCCTAAAACA
91163188 CTAAAC
1 CTAAAC
91163194 CCCAAAAAAC
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
54 40 0.77
55 12 0.23
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (55 bp):
CTAAACTCCTAAACCCTCAAAAAATCATAAACACTAAACTATAACCCCTAAAACA
Found at i:91163411 original size:21 final size:21
Alignment explanation
Indices: 91163385--91163428 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
91163375 GATTATGGGT
*
91163385 TTAGGGAT-TATGGTTTAAGAG
1 TTAGGGATCTA-GGATTAAGAG
*
91163406 TTAGGGGTCTAGGATTAAGAG
1 TTAGGGATCTAGGATTAAGAG
91163427 TT
1 TT
91163429 TATATTTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.27, C:0.02, G:0.34, T:0.36
Consensus pattern (21 bp):
TTAGGGATCTAGGATTAAGAG
Found at i:91163460 original size:21 final size:21
Alignment explanation
Indices: 91163398--91163460 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
91163388 GGGATTATGG
*
91163398 TTTAAGAGTTAGGGGTCTAGGA
1 TTTAAGATTTA-GGGTCTAGGA
*** *
91163420 -TTAAGAGTTTATATTTTAGGA
1 TTTAAGA-TTTAGGGTCTAGGA
91163441 TTTAAGATTTAGGGTCTAGG
1 TTTAAGATTTAGGGTCTAGG
91163461 GATTAAGGAT
Statistics
Matches: 30, Mismatches: 9, Indels: 5
0.68 0.20 0.11
Matches are distributed among these distances:
21 21 0.70
22 9 0.30
ACGTcount: A:0.29, C:0.03, G:0.29, T:0.40
Consensus pattern (21 bp):
TTTAAGATTTAGGGTCTAGGA
Found at i:91163479 original size:43 final size:43
Alignment explanation
Indices: 91163398--91163487 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
91163388 GGGATTATGG
* *
91163398 TTTAAGAGTTAGGGGTCTAGGATTAAGAGTTTATATTTTAGGA
1 TTTAAGAGTTAGGGGTCTAGGATTAAGAGTTAAGATTTTAGGA
* *
91163441 TTTAAGATTTA-GGGTCTAGGGATTAAG-GATTAAGATTTTAGGG
1 TTTAAGAGTTAGGGGTCTA-GGATTAAGAG-TTAAGATTTTAGGA
91163484 TTTA
1 TTTA
91163488 GTTAATTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
42 8 0.20
43 33 0.80
ACGTcount: A:0.30, C:0.02, G:0.28, T:0.40
Consensus pattern (43 bp):
TTTAAGAGTTAGGGGTCTAGGATTAAGAGTTAAGATTTTAGGA
Found at i:91163606 original size:14 final size:14
Alignment explanation
Indices: 91163587--91163625 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
91163577 ATCATTATAG
91163587 TTTAGGGTTTACGA
1 TTTAGGGTTTACGA
* *
91163601 TTTAGGGTATATGA
1 TTTAGGGTTTACGA
*
91163615 TTAAGGGTTTA
1 TTTAGGGTTTA
91163626 AGGTTTATGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.26, C:0.03, G:0.28, T:0.44
Consensus pattern (14 bp):
TTTAGGGTTTACGA
Found at i:91164104 original size:19 final size:19
Alignment explanation
Indices: 91164082--91164121 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
91164072 CATTGATAAC
*
91164082 AAATAAAAATGAAATACAA
1 AAATAAAAATAAAATACAA
* *
91164101 AAATGAAAATAAAATATAA
1 AAATAAAAATAAAATACAA
91164120 AA
1 AA
91164122 TAGAGATTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (19 bp):
AAATAAAAATAAAATACAA
Found at i:91167087 original size:43 final size:43
Alignment explanation
Indices: 91167024--91167201 Score: 248
Period size: 43 Copynumber: 4.1 Consensus size: 43
91167014 GTCTGTTTTA
* *
91167024 TAGCGGCGTTTGTGAAAAAAGTGCCACTAAAAGTCATGGTCTT
1 TAGCGGCGTTTGCGAAAAAAGCGCCACTAAAAGTCATGGTCTT
* * *
91167067 TAGCTGCGTTTGCGAGAAAAGCGCCACTAAAGGTCATGGTCTT
1 TAGCGGCGTTTGCGAAAAAAGCGCCACTAAAAGTCATGGTCTT
* * *
91167110 TAGCGGCGTTTGCCAAAAAAGCGCCGCTAAAGGTCATGGTCTT
1 TAGCGGCGTTTGCGAAAAAAGCGCCACTAAAAGTCATGGTCTT
* * * *
91167153 TAACGGCGTTTGCGAAAAAAGCGCCGCTAAAAGTTATGATCTT
1 TAGCGGCGTTTGCGAAAAAAGCGCCACTAAAAGTCATGGTCTT
91167196 TAGCGG
1 TAGCGG
91167202 TTTTTTTTAA
Statistics
Matches: 120, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 120 1.00
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (43 bp):
TAGCGGCGTTTGCGAAAAAAGCGCCACTAAAAGTCATGGTCTT
Found at i:91167146 original size:86 final size:86
Alignment explanation
Indices: 91166997--91167201 Score: 261
Period size: 86 Copynumber: 2.4 Consensus size: 86
91166987 GCATTTATGT
* * ** *
91166997 GAAAAGCGTCGCTAAAGGTC-T-GTTTTATAGCGGCGTTTGTGAAAAAAGTGCCACTAAAAGTCA
1 GAAAAGCGCCGCTAAAGGTCATGGTCTT-TAGCGGCGTTTGCCAAAAAAGCGCCACTAAAAGTCA
* *
91167060 TGGTCTTTAGCTGCGTTTGCGA
65 TGGTCTTTAACGGCGTTTGCGA
* * *
91167082 GAAAAGCGCCACTAAAGGTCATGGTCTTTAGCGGCGTTTGCCAAAAAAGCGCCGCTAAAGGTCAT
1 GAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGCCAAAAAAGCGCCACTAAAAGTCAT
91167147 GGTCTTTAACGGCGTTTGCGA
66 GGTCTTTAACGGCGTTTGCGA
* * * *
91167168 AAAAAGCGCCGCTAAAAGTTATGATCTTTAGCGG
1 GAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGG
91167202 TTTTTTTTAA
Statistics
Matches: 103, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
85 18 0.17
86 81 0.79
87 4 0.04
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (86 bp):
GAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGCCAAAAAAGCGCCACTAAAAGTCAT
GGTCTTTAACGGCGTTTGCGA
Found at i:91172332 original size:19 final size:19
Alignment explanation
Indices: 91172308--91172360 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 19
91172298 TATTGGAAAA
91172308 AAAAATAAAAAAACGTAA-T
1 AAAAATAAAAAAACG-AAGT
91172327 AAAAATAAAAAATA-GAAGT
1 AAAAATAAAAAA-ACGAAGT
91172346 AAAAATAAAGAAAAC
1 AAAAATAAA-AAAAC
91172361 TAGTTGTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
18 2 0.07
19 24 0.80
20 4 0.13
ACGTcount: A:0.75, C:0.04, G:0.08, T:0.13
Consensus pattern (19 bp):
AAAAATAAAAAAACGAAGT
Found at i:91172570 original size:11 final size:11
Alignment explanation
Indices: 91172556--91172581 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
91172546 ATAGGCAAAA
91172556 AATATAATAGT
1 AATATAATAGT
91172567 AATATAATAGT
1 AATATAATAGT
91172578 AATA
1 AATA
91172582 ATAGCAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (11 bp):
AATATAATAGT
Found at i:91172700 original size:14 final size:13
Alignment explanation
Indices: 91172681--91172730 Score: 57
Period size: 14 Copynumber: 3.7 Consensus size: 13
91172671 ATGATATATT
*
91172681 AAATAACAATAGTA
1 AAATAATAA-AGTA
91172695 AAATAAT-AAGTA
1 AAATAATAAAGTA
91172707 ACAATAATAAAGTA
1 A-AATAATAAAGTA
91172721 TAAATAATAA
1 -AAATAATAA
91172731 TAGTGATGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
12 5 0.16
13 7 0.22
14 19 0.59
15 1 0.03
ACGTcount: A:0.66, C:0.04, G:0.06, T:0.24
Consensus pattern (13 bp):
AAATAATAAAGTA
Found at i:91172738 original size:65 final size:65
Alignment explanation
Indices: 91172616--91172739 Score: 158
Period size: 65 Copynumber: 1.9 Consensus size: 65
91172606 ATGAGGATAA
* * * * * *
91172616 AAATAACAATACTAATATATTAAGTTACAATAGTAAAATAAAAATGATGATAATGATGATATATT
1 AAATAACAATACTAAAATAATAAGTAACAATAATAAAATAAAAATAATAATAATGATGATATATT
* * * *
91172681 AAATAACAATAGTAAAATAATAAGTAACAATAATAAAGTATAAATAATAATAGTGATGA
1 AAATAACAATACTAAAATAATAAGTAACAATAATAAAATAAAAATAATAATAATGATGA
91172740 GAATAATAAC
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
65 49 1.00
ACGTcount: A:0.57, C:0.04, G:0.10, T:0.29
Consensus pattern (65 bp):
AAATAACAATACTAAAATAATAAGTAACAATAATAAAATAAAAATAATAATAATGATGATATATT
Found at i:91172756 original size:19 final size:19
Alignment explanation
Indices: 91172723--91172768 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
91172713 ATAAAGTATA
* *
91172723 AATAATAA-TAGTGATGAG
1 AATAATAACGAGTGATAAG
*
91172741 AATAATAACGAGTGATAAT
1 AATAATAACGAGTGATAAG
91172760 AATAATAAC
1 AATAATAAC
91172769 AGTAACAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 8 0.33
19 16 0.67
ACGTcount: A:0.54, C:0.04, G:0.15, T:0.26
Consensus pattern (19 bp):
AATAATAACGAGTGATAAG
Found at i:91172905 original size:3 final size:3
Alignment explanation
Indices: 91172897--91172933 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
91172887 GTACATATAT
91172897 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
91172934 ATAAAAAAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:91175195 original size:16 final size:16
Alignment explanation
Indices: 91175172--91175207 Score: 63
Period size: 17 Copynumber: 2.2 Consensus size: 16
91175162 CCAATGATTG
91175172 ATTTTTTTTATAAGTGA
1 ATTTTTTTTAT-AGTGA
91175189 ATTTTTTTTATAGTGA
1 ATTTTTTTTATAGTGA
91175205 ATT
1 ATT
91175208 AAAATAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (16 bp):
ATTTTTTTTATAGTGA
Found at i:91179455 original size:83 final size:84
Alignment explanation
Indices: 91179314--91179483 Score: 333
Period size: 83 Copynumber: 2.0 Consensus size: 84
91179304 TAATTGCTCA
91179314 CAACAATTTAGCTGCATATTTGGAATTTTTTTTTCTGATGTTGGTATGGGCATTTATTTCTTTAA
1 CAACAATTTAGCTGCATATTTGGAATTTTTTTTTCTGATGTTGGTATGGGCATTTATTTCTTTAA
91179379 CTTTCGAGCTTTTTACCCC
66 CTTTCGAGCTTTTTACCCC
91179398 CAACAATTTAGCTGCATATTTGGAA-TTTTTTTTCTGATGTTGGTATGGGCATTTATTTCTTTAA
1 CAACAATTTAGCTGCATATTTGGAATTTTTTTTTCTGATGTTGGTATGGGCATTTATTTCTTTAA
91179462 CTTTCGAGCTTTTTACCCC
66 CTTTCGAGCTTTTTACCCC
91179481 CAA
1 CAA
91179484 AATAACATTG
Statistics
Matches: 86, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
83 61 0.71
84 25 0.29
ACGTcount: A:0.21, C:0.17, G:0.15, T:0.46
Consensus pattern (84 bp):
CAACAATTTAGCTGCATATTTGGAATTTTTTTTTCTGATGTTGGTATGGGCATTTATTTCTTTAA
CTTTCGAGCTTTTTACCCC
Found at i:91182982 original size:24 final size:24
Alignment explanation
Indices: 91182950--91182998 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
91182940 AGAAAAGAAA
91182950 TGAGGTCACTTTGGATACTATAAT
1 TGAGGTCACTTTGGATACTATAAT
91182974 TGAGGTCACTTTGGATACTATAAT
1 TGAGGTCACTTTGGATACTATAAT
91182998 T
1 T
91182999 TAACTGTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (24 bp):
TGAGGTCACTTTGGATACTATAAT
Found at i:91183825 original size:6 final size:6
Alignment explanation
Indices: 91183814--91183849 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
91183804 TCTACATTCG
*
91183814 GTTGCT GTTGCT GTTGCT GTTGCT GTTGCT GCTGCT
1 GTTGCT GTTGCT GTTGCT GTTGCT GTTGCT GTTGCT
91183850 TTTTCACAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.19, G:0.33, T:0.47
Consensus pattern (6 bp):
GTTGCT
Found at i:91185125 original size:21 final size:20
Alignment explanation
Indices: 91185073--91185126 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
91185063 CTCAATCCTC
*
91185073 AATTTCCAATTTTCTATTATA
1 AATTT-CAATTTTCAATTATA
* *
91185094 AATCTTCAATTTTCAATTTTT
1 AAT-TTCAATTTTCAATTATA
91185115 AATTTCGAATTT
1 AATTTC-AATTT
91185127 CTGGTCATCA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 3 0.11
21 23 0.82
22 2 0.07
ACGTcount: A:0.31, C:0.13, G:0.02, T:0.54
Consensus pattern (20 bp):
AATTTCAATTTTCAATTATA
Found at i:91188413 original size:37 final size:37
Alignment explanation
Indices: 91188363--91188441 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
91188353 TTATTACGAA
* * *
91188363 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
91188400 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
91188437 GTCTT
1 GTCTT
91188442 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:91188685 original size:49 final size:49
Alignment explanation
Indices: 91188560--91188691 Score: 173
Period size: 47 Copynumber: 2.8 Consensus size: 49
91188550 CCCTTCGGGA
* * * *
91188560 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCACTAGGC
* * *
91188607 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCACTAGGC
91188654 CTTATCACATATATATACACTTTCACATTCATCACATC
1 CTTATCACATATATATACACTTTCACATTCATCACATC
91188692 ACAATTATCC
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
46 1 0.01
47 43 0.60
49 28 0.39
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCACTAGGC
Found at i:91191290 original size:35 final size:37
Alignment explanation
Indices: 91191264--91191382 Score: 95
Period size: 35 Copynumber: 3.2 Consensus size: 37
91191254 AGCACTGGGT
91191264 ACAATTACCATTGGTTAATCCAACTAGAGCTGGGCTC
1 ACAATTACCATTGGTTAATCCAACTAGAGCTGGGCTC
** * *
91191301 ACAATTATTATCGTCGG-TATATCCGACTAGCA-CTGAG-TGC
1 ACAATTACCAT--T-GGTTA-ATCCAACTAG-AGCTGGGCT-C
* *
91191341 A-AA-TACCGTTGGTTCATCCAACTAGAGCTGGGCTC
1 ACAATTACCATTGGTTAATCCAACTAGAGCTGGGCTC
91191376 ACAATTA
1 ACAATTA
91191383 TTATCGTCGG
Statistics
Matches: 61, Mismatches: 10, Indels: 22
0.66 0.11 0.24
Matches are distributed among these distances:
34 1 0.02
35 17 0.28
36 5 0.08
37 11 0.18
38 3 0.05
39 6 0.10
40 17 0.28
41 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (37 bp):
ACAATTACCATTGGTTAATCCAACTAGAGCTGGGCTC
Found at i:91191556 original size:75 final size:75
Alignment explanation
Indices: 91191239--91191528 Score: 388
Period size: 75 Copynumber: 3.9 Consensus size: 75
91191229 CACACAACCT
* * * * * * *
91191239 TCGGTTTATCTGACTAGCACTGGGTACAATTACCATTGGTTAATCCAACTAGAGCTGGGCTCACA
1 TCGGTATATCCGACTAGCACTGGGTGCAAATACCGTTGATTTATCCAACTAGAGCTGGGCTCACA
91191304 ATTATTATCG
66 ATTATTATCG
* * *
91191314 TCGGTATATCCGACTAGCACTGAGTGCAAATACCGTTGGTTCATCCAACTAGAGCTGGGCTCACA
1 TCGGTATATCCGACTAGCACTGGGTGCAAATACCGTTGATTTATCCAACTAGAGCTGGGCTCACA
91191379 ATTATTATCG
66 ATTATTATCG
* * * *
91191389 TCGGTATATCCAACTAGCACTAGGTGTAAATATCC-TT-ATTTTATCCAACGAGAGCTGGGCTCA
1 TCGGTATATCCGACTAGCACTGGGTGCAAATA-CCGTTGA-TTTATCCAACTAGAGCTGGGCTCA
*
91191452 CAATTACTATCG
64 CAATTATTATCG
*
91191464 TCGGTATA-CTCGACTAGCACTGGGTGCAATTACCGTTGATTTATCCAACTAGAGCTGGGCTCAC
1 TCGGTATATC-CGACTAGCACTGGGTGCAAATACCGTTGATTTATCCAACTAGAGCTGGGCTCAC
91191528 A
65 A
91191529 TTTAATACTG
Statistics
Matches: 190, Mismatches: 20, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
74 3 0.02
75 184 0.97
76 3 0.02
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (75 bp):
TCGGTATATCCGACTAGCACTGGGTGCAAATACCGTTGATTTATCCAACTAGAGCTGGGCTCACA
ATTATTATCG
Found at i:91196810 original size:3 final size:3
Alignment explanation
Indices: 91196786--91196830 Score: 58
Period size: 3 Copynumber: 15.3 Consensus size: 3
91196776 AATATCCTTG
*
91196786 TTA TTT TTA -TA TTA TTGA -TA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
91196830 T
1 T
91196831 ATATGTTAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
2 3 0.08
3 33 0.89
4 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:91197026 original size:12 final size:11
Alignment explanation
Indices: 91196995--91197054 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 11
91196985 TGTTATATAC
91196995 GTATATATT-T
1 GTATATATTAT
91197005 -TATATATTAT
1 GTATATATTAT
91197015 GTATATTATTAT
1 GTATA-TATTAT
*
91197027 -T-TTTATTA-
1 GTATATATTAT
*
91197035 -TACATATTAT
1 GTATATATTAT
91197045 GTATATATTA
1 GTATATATTA
91197055 AATATCGTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
8 1 0.03
9 18 0.45
10 2 0.05
11 13 0.32
12 6 0.15
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (11 bp):
GTATATATTAT
Found at i:91197117 original size:23 final size:25
Alignment explanation
Indices: 91197076--91197123 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
91197066 ATTCATGTAT
91197076 TATATCATATAAGCATATATCTTTAA
1 TATATCATATAAG-ATATATCTTTAA
*
91197102 TATAT-ATATAAG-TATATTTTTA
1 TATATCATATAAGATATATCTTTA
91197124 TGTAATATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 9 0.43
25 7 0.33
26 5 0.24
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.48
Consensus pattern (25 bp):
TATATCATATAAGATATATCTTTAA
Found at i:91197468 original size:16 final size:16
Alignment explanation
Indices: 91197442--91197481 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
91197432 TTATACGTGT
*
91197442 ATATATATTTTTATATA
1 ATAT-TATTTTCATATA
*
91197459 GTATTATTTTCATATA
1 ATATTATTTTCATATA
91197475 ATATTAT
1 ATATTAT
91197482 ACTCATTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 17 0.85
17 3 0.15
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (16 bp):
ATATTATTTTCATATA
Found at i:91197665 original size:21 final size:21
Alignment explanation
Indices: 91197632--91197678 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 21
91197622 ATATATATTG
91197632 TATATGTTCATTTATACTATGTA
1 TATATGTTCA-TT-TACTATGTA
*
91197655 TATATG-T-ATTTAGTATGTA
1 TATATGTTCATTTACTATGTA
91197674 TATAT
1 TATAT
91197679 TTAGTATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 13 0.57
20 2 0.09
21 1 0.04
22 1 0.04
23 6 0.26
ACGTcount: A:0.32, C:0.04, G:0.11, T:0.53
Consensus pattern (21 bp):
TATATGTTCATTTACTATGTA
Found at i:91197670 original size:15 final size:15
Alignment explanation
Indices: 91197652--91197685 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
91197642 TTTATACTAT
*
91197652 GTATATATGTATTTA
1 GTATATATATATTTA
*
91197667 GTATGTATATATTTA
1 GTATATATATATTTA
91197682 GTAT
1 GTAT
91197686 TATTACACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (15 bp):
GTATATATATATTTA
Found at i:91200902 original size:28 final size:28
Alignment explanation
Indices: 91200870--91200925 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
91200860 GAATGGAAAG
91200870 AAGAAATTAGCAACATCAAATGCGGGAT
1 AAGAAATTAGCAACATCAAATGCGGGAT
91200898 AAGAAATTAGCAACATCAAATGCGGGAT
1 AAGAAATTAGCAACATCAAATGCGGGAT
91200926 GGAATTTTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.14, G:0.21, T:0.18
Consensus pattern (28 bp):
AAGAAATTAGCAACATCAAATGCGGGAT
Found at i:91208701 original size:25 final size:25
Alignment explanation
Indices: 91208673--91208725 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
91208663 TCCATGACAA
*
91208673 GAAAGTACGGCCAAGAGAATTCCAT
1 GAAAGTACAGCCAAGAGAATTCCAT
* *
91208698 GAAAGTATAGCCACGAGAATTCCAT
1 GAAAGTACAGCCAAGAGAATTCCAT
91208723 GAA
1 GAA
91208726 GGAGGACTCG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.17
Consensus pattern (25 bp):
GAAAGTACAGCCAAGAGAATTCCAT
Found at i:91210059 original size:90 final size:91
Alignment explanation
Indices: 91209910--91210077 Score: 250
Period size: 90 Copynumber: 1.9 Consensus size: 91
91209900 AATTTCTGTT
*
91209910 TTTCAAAAAAAACCAACTCATATTGCGAGAGATGAGTTGAACCTCGGTTCACATACTGAGGTATT
1 TTTCAAAAAAAACCAACTCATATTGCGAGAGATGAGTTGAACCTCGCTTCACATACTGAGGTATT
*
91209975 TCCAATTTCTGTTCTTTTAATTTATG
66 TCCAATTACTGTTCTTTTAATTTATG
* * * *
91210001 TTTC-AAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGACTT-ATATGCTGAGGTAT
1 TTTCAAAAAAAACCAACTCATATTGCGAGAGATGAGTTGAACCTCG-CTTCACATACTGAGGTAT
*
91210064 TTTCAATTACTGTT
65 TTCCAATTACTGTT
91210078 TGTCAAAAAC
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
90 63 0.91
91 6 0.09
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.36
Consensus pattern (91 bp):
TTTCAAAAAAAACCAACTCATATTGCGAGAGATGAGTTGAACCTCGCTTCACATACTGAGGTATT
TCCAATTACTGTTCTTTTAATTTATG
Found at i:91210178 original size:13 final size:13
Alignment explanation
Indices: 91210138--91210185 Score: 69
Period size: 13 Copynumber: 3.6 Consensus size: 13
91210128 CGCTGAGGTA
91210138 TTTTCAAATTCTG
1 TTTTCAAATTCTG
91210151 TCTTTCAAATTCTG
1 T-TTTCAAATTCTG
* *
91210165 TTTTTAATTTCTG
1 TTTTCAAATTCTG
91210178 TTTTCAAA
1 TTTTCAAA
91210186 AATCAACTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
13 17 0.57
14 13 0.43
ACGTcount: A:0.23, C:0.15, G:0.06, T:0.56
Consensus pattern (13 bp):
TTTTCAAATTCTG
Found at i:91210320 original size:14 final size:15
Alignment explanation
Indices: 91210308--91210336 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
91210298 GTATTTTCAG
91210308 TTTCTGTTTTTCAAA
1 TTTCTGTTTTTCAAA
91210323 TTTCTG-TTTTCAAA
1 TTTCTGTTTTTCAAA
91210337 AATCAACTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.59
Consensus pattern (15 bp):
TTTCTGTTTTTCAAA
Found at i:91210427 original size:89 final size:87
Alignment explanation
Indices: 91210246--91210499 Score: 291
Period size: 89 Copynumber: 2.9 Consensus size: 87
91210236 CAATTTATAG
* * * *
91210246 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCGCATGCTGAGGTATTTTCAGTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--CACACGCTGAGGTAATTTCAATTT
91210311 CTGTTTTTCAAATTTCTGTTTTCA
64 CTGTTTTTCAAATTTCTGTTTTCA
*
91210335 AAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACACGCTGAGGTAATTTCAATTTC
*
91210399 TGTTTTT-TAATTTCTGCTTTTCAAA
65 TGTTTTTCAAATTTCTG-TTTTC--A
* * * *
91210424 AAAATCAACTCATATTG-GGGAAGGTGAGTTGAGCTTTGGCTCACACGCTGAGGT-ATTTTAAGT
1 AAAATCAACTCATATTGCGAG-AGGTGAGTTGAGCCTCGG--CACACGCTGAGGTAATTTCAA-T
*
91210487 TTCTGTTTGTCAA
62 TTCTGTTTTTCAA
91210500 GAATCAACTC
Statistics
Matches: 142, Mismatches: 13, Indels: 17
0.83 0.08 0.10
Matches are distributed among these distances:
86 8 0.06
87 32 0.23
88 4 0.03
89 67 0.47
90 8 0.06
91 22 0.15
92 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (87 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGAGGTAATTTCAATTTCT
GTTTTTCAAATTTCTGTTTTCA
Found at i:91210527 original size:75 final size:75
Alignment explanation
Indices: 91210426--91210569 Score: 202
Period size: 75 Copynumber: 1.9 Consensus size: 75
91210416 TTTTCAAAAA
* * *
91210426 AATCAACTCATATTGGGGAAGGTGAGTTGAGCTTTGGCTCACACGCTGAGGTATTTT-AAGTTTC
1 AATCAACTCATATTGGAGAAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAA-TTTC
91210490 TGTTTGTCAAG
65 TGTTTGTCAAG
* **
91210501 AATCAACTCATCTTGCGAGAA-GTGAGTTGAGCCTTGGCTCATGCGCTGAGCTATTTTCAATTTC
1 AATCAACTCATATTG-GAGAAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAATTTC
91210565 TGTTT
65 TGTTT
91210570 TTAATGTCTG
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
75 55 0.90
76 6 0.10
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.35
Consensus pattern (75 bp):
AATCAACTCATATTGGAGAAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAATTTCT
GTTTGTCAAG
Found at i:91211866 original size:16 final size:16
Alignment explanation
Indices: 91211821--91211867 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
91211811 TGGCCGGATT
*
91211821 CCCTCCCTTCTTTCTC
1 CCCTCTCTTCTTTCTC
* *
91211837 CCCTTTCTCCTTTCTC
1 CCCTCTCTTCTTTCTC
*
91211853 CCCTCTCTTTTTTCT
1 CCCTCTCTTCTTTCT
91211868 TTTTTTTTCT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (16 bp):
CCCTCTCTTCTTTCTC
Found at i:91212535 original size:12 final size:11
Alignment explanation
Indices: 91212504--91212563 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 11
91212494 TGTTATATAC
91212504 GTATATATT-T
1 GTATATATTAT
91212514 -TATATATTAT
1 GTATATATTAT
91212524 GTATATTATTAT
1 GTATA-TATTAT
*
91212536 -T-TTTATTA-
1 GTATATATTAT
*
91212544 -TACATATTAT
1 GTATATATTAT
91212554 GTATATATTA
1 GTATATATTA
91212564 AATATCGTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
8 1 0.03
9 18 0.45
10 2 0.05
11 13 0.32
12 6 0.15
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (11 bp):
GTATATATTAT
Found at i:91212976 original size:16 final size:16
Alignment explanation
Indices: 91212950--91212989 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
91212940 TTATACGTGT
*
91212950 ATATATATTTTTATATA
1 ATAT-TATTTTCATATA
*
91212967 GTATTATTTTCATATA
1 ATATTATTTTCATATA
91212983 ATATTAT
1 ATATTAT
91212990 ACTCATTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 17 0.85
17 3 0.15
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (16 bp):
ATATTATTTTCATATA
Found at i:91213174 original size:21 final size:21
Alignment explanation
Indices: 91213141--91213187 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 21
91213131 ATATATATTG
91213141 TATATGTTCATTTATACTATGTA
1 TATATGTTCA-TT-TACTATGTA
*
91213164 TATATG-T-ATTTAGTATGTA
1 TATATGTTCATTTACTATGTA
91213183 TATAT
1 TATAT
91213188 TTAGTATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 13 0.57
20 2 0.09
21 1 0.04
22 1 0.04
23 6 0.26
ACGTcount: A:0.32, C:0.04, G:0.11, T:0.53
Consensus pattern (21 bp):
TATATGTTCATTTACTATGTA
Found at i:91213179 original size:15 final size:15
Alignment explanation
Indices: 91213161--91213194 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
91213151 TTTATACTAT
*
91213161 GTATATATGTATTTA
1 GTATATATATATTTA
*
91213176 GTATGTATATATTTA
1 GTATATATATATTTA
91213191 GTAT
1 GTAT
91213195 TATTACACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (15 bp):
GTATATATATATTTA
Found at i:91215375 original size:131 final size:131
Alignment explanation
Indices: 91215204--91215460 Score: 388
Period size: 131 Copynumber: 2.0 Consensus size: 131
91215194 TTAGAGAGTA
* * * *
91215204 TGAGTGAAATTCTAAAGGAATCTTCAATCATTTTGGACAAACTAGAAATTGCAACCCAGCACGAT
1 TGAGTAAAATTCTAAAGGAACCTTCAATCATTTTGAACAAACGAGAAATTGCAACCCAGCACGAT
* * * *
91215269 AGGGCCCGATTCTGCAAATTGCCAAATATCGAACATCGCCTTTGTTTAAAGAATTTTTAAAAGAC
66 AGGGCACGATTCCGCAAATTGCCAAATATCGAACATCGCCTTCGCTTAAAGAATTTTTAAAAGAC
91215334 G
131 G
* * * *
91215335 TGAGTAAAATTCTAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCATGAT
1 TGAGTAAAATTCTAAAGGAACCTTCAATCATTTTGAACAAACGAGAAATTGCAACCCAGCACGAT
**
91215400 AGGGCACGATTCCGTGAATTGCCAAATATCGAACATCGCCTTCGCTTAAAGAATTTTTAAA
66 AGGGCACGATTCCGCAAATTGCCAAATATCGAACATCGCCTTCGCTTAAAGAATTTTTAAA
91215461 TGAATAATTA
Statistics
Matches: 112, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
131 112 1.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (131 bp):
TGAGTAAAATTCTAAAGGAACCTTCAATCATTTTGAACAAACGAGAAATTGCAACCCAGCACGAT
AGGGCACGATTCCGCAAATTGCCAAATATCGAACATCGCCTTCGCTTAAAGAATTTTTAAAAGAC
G
Found at i:91219513 original size:28 final size:28
Alignment explanation
Indices: 91219473--91219551 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
91219463 GCAATCAAAT
* * *
91219473 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
91219501 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* * *
91219529 ATGACACGTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
91219552 CGAATGATTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.28
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:91221432 original size:28 final size:28
Alignment explanation
Indices: 91221401--91221612 Score: 190
Period size: 28 Copynumber: 7.5 Consensus size: 28
91221391 GTGAACATAG
*
91221401 GCACTGTGTGTGTGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* ****
91221429 GCACTGTGTGTGCGAGATCCGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* * *
91221457 GGCACTATGTGTACGAGTTCTGTAACCGA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
* * ****
91221486 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
*
91221514 GCCACTGTGTGTGCGAGTTCCGTAACCAA
1 G-CACTGTGTGTGCGAGTTCCGTAACCGA
* * ****
91221543 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
*
91221571 GGCACTGTGTGTGCGAGTTCTGTAACCGA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
91221600 GCACTGTGTGTGC
1 GCACTGTGTGTGC
91221613 AAGATCGGTT
Statistics
Matches: 139, Mismatches: 42, Indels: 6
0.74 0.22 0.03
Matches are distributed among these distances:
28 76 0.55
29 63 0.45
ACGTcount: A:0.17, C:0.20, G:0.34, T:0.29
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCGA
Found at i:91221468 original size:29 final size:29
Alignment explanation
Indices: 91221429--91221642 Score: 164
Period size: 29 Copynumber: 7.4 Consensus size: 29
91221419 CCGTAACCGA
*
91221429 GCACTGTGTGTGCGAGATCCGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * * * ****
91221458 GCACTATGTGTACGAGTTCTGTAACCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
91221486 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * * **** *
91221515 CCACTGTGTGTGCGAGTTCCG-TAACCAA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
91221543 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * ****
91221572 GCACTGTGTGTGCGAGTTCTGTAACCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* *
91221600 GCACTGTGTGTGCAAGATCGGTTGTTGGG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
91221629 GCACTAAGTGTGTG
1 GCACT--GTGTGTG
91221643 AAATGAGATC
Statistics
Matches: 134, Mismatches: 46, Indels: 8
0.71 0.24 0.04
Matches are distributed among these distances:
28 60 0.45
29 67 0.50
31 7 0.05
ACGTcount: A:0.17, C:0.18, G:0.35, T:0.29
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:91221468 original size:57 final size:57
Alignment explanation
Indices: 91221399--91221642 Score: 380
Period size: 57 Copynumber: 4.2 Consensus size: 57
91221389 AAGTGAACAT
* *
91221399 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCCGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * *
91221456 AGGCACTATGTGTACGAGTTCTGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
91221513 AGCCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
91221570 AGGCACTGTGTGTGCGAGTTCTGTAACCGAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
91221627 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
91221643 AAATGAGATC
Statistics
Matches: 170, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
57 163 0.96
59 7 0.04
ACGTcount: A:0.18, C:0.18, G:0.35, T:0.29
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:91225997 original size:28 final size:28
Alignment explanation
Indices: 91225957--91226035 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
91225947 GCAATCAAAT
* * *
91225957 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
91225985 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
91226013 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
91226036 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:91227784 original size:133 final size:133
Alignment explanation
Indices: 91227517--91227768 Score: 396
Period size: 133 Copynumber: 1.9 Consensus size: 133
91227507 GGGTGTTACA
* * * * *
91227517 GAAACGAGATCTACAATCTTCAACCTACTCCACTACAGCTTTAGGGAGCTAGGATGATGGTTTAA
1 GAAACAAGATCAACAATCTTCAACCTACTCCACTACAACTTTAGGAAGCTAGGATGATGGCTTAA
* *
91227582 ATCTGCTTTACTGCAACTTCAGAAAGACCAGATTCGCCGTCTTCGATCTGCTCCACTACAACTTC
66 ATCTGCTTCACTGCAACTTCAGAAAGACCAGATTCGCCGTCTTCGATCTACTCCACTACAACTTC
91227647 AGG
131 AGG
* *
91227650 GAAACAAGATCAACAATCTTCAGCCTACTCCACTACAACTTTAGGAAGCTAGGATGGTGGCTTAA
1 GAAACAAGATCAACAATCTTCAACCTACTCCACTACAACTTTAGGAAGCTAGGATGATGGCTTAA
* * *
91227715 ATCTGCTTCACTGCAACTTCAGAAAGGCTAGATTCGCCGTCTTTGATCTACTCC
66 ATCTGCTTCACTGCAACTTCAGAAAGACCAGATTCGCCGTCTTCGATCTACTCC
91227769 GCTGTAACTT
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
133 107 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (133 bp):
GAAACAAGATCAACAATCTTCAACCTACTCCACTACAACTTTAGGAAGCTAGGATGATGGCTTAA
ATCTGCTTCACTGCAACTTCAGAAAGACCAGATTCGCCGTCTTCGATCTACTCCACTACAACTTC
AGG
Found at i:91232212 original size:17 final size:17
Alignment explanation
Indices: 91232190--91232245 Score: 69
Period size: 17 Copynumber: 3.4 Consensus size: 17
91232180 TTGTATGGTA
91232190 TCATTCATAATCTACTT
1 TCATTCATAATCTACTT
* * * *
91232207 TCATTCTTCAT-TAATA
1 TCATTCATAATCTACTT
91232223 TCATTCATAATCTACTT
1 TCATTCATAATCTACTT
91232240 TCATTC
1 TCATTC
91232246 TTCATTGATA
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
16 12 0.40
17 18 0.60
ACGTcount: A:0.29, C:0.23, G:0.00, T:0.48
Consensus pattern (17 bp):
TCATTCATAATCTACTT
Found at i:91232230 original size:33 final size:33
Alignment explanation
Indices: 91232188--91232267 Score: 151
Period size: 33 Copynumber: 2.4 Consensus size: 33
91232178 ATTTGTATGG
91232188 TATCATTCATAATCTACTTTCATTCTTCATTAA
1 TATCATTCATAATCTACTTTCATTCTTCATTAA
*
91232221 TATCATTCATAATCTACTTTCATTCTTCATTGA
1 TATCATTCATAATCTACTTTCATTCTTCATTAA
91232254 TATCATTCATAATC
1 TATCATTCATAATC
91232268 ATTGAGCCAC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.30, C:0.21, G:0.01, T:0.47
Consensus pattern (33 bp):
TATCATTCATAATCTACTTTCATTCTTCATTAA
Found at i:91232249 original size:20 final size:20
Alignment explanation
Indices: 91232193--91232250 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
91232183 TATGGTATCA
91232193 TTCATAATCTACTTTCATTC
1 TTCATAATCTACTTTCATTC
91232213 TTCATTAA--TA---TCA---
1 TTCA-TAATCTACTTTCATTC
91232226 TTCATAATCTACTTTCATTC
1 TTCATAATCTACTTTCATTC
91232246 TTCAT
1 TTCAT
91232251 TGATATCATT
Statistics
Matches: 29, Mismatches: 0, Indels: 18
0.62 0.00 0.38
Matches are distributed among these distances:
12 3 0.10
13 4 0.14
14 2 0.07
16 3 0.10
17 3 0.10
19 2 0.07
20 9 0.31
21 3 0.10
ACGTcount: A:0.28, C:0.22, G:0.00, T:0.50
Consensus pattern (20 bp):
TTCATAATCTACTTTCATTC
Found at i:91239674 original size:131 final size:131
Alignment explanation
Indices: 91239502--91239759 Score: 410
Period size: 131 Copynumber: 2.0 Consensus size: 131
91239492 TTTAGAGAGT
* * *
91239502 ATGAGTGAAATTCTAAAGGAATCTTCGATCATTTTGGACAAACGAGAAATTGCAACCCAGCACGA
1 ATGAGTGAAATTCTAAAGGAACCTTCGATCATTTTGAACAAACGAGAAATTGCAACCCAACACGA
* * *
91239567 TAGGGCACGAT-TCCGTGAATTGCCAAATATCGAACATCGCCTTCGTTTAAAGAATTTTTAAAAG
66 TAGGGCACGATCT-CGCGAATTGCCAAATATCGAACATCGCATTCGCTTAAAGAATTTTTAAAAG
91239631 AC
130 AC
* * *
91239633 ATGAGTGAAATTCTAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCTAACACGA
1 ATGAGTGAAATTCTAAAGGAACCTTCGATCATTTTGAACAAACGAGAAATTGCAACCCAACACGA
*
91239698 TAGGGCACGATCTCGCGAATTGCCAAATATCGAACATCGCATTTGCTTAAAGAATTTTTAAA
66 TAGGGCACGATCTCGCGAATTGCCAAATATCGAACATCGCATTCGCTTAAAGAATTTTTAAA
91239760 TGAATAATTA
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
131 115 0.99
132 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (131 bp):
ATGAGTGAAATTCTAAAGGAACCTTCGATCATTTTGAACAAACGAGAAATTGCAACCCAACACGA
TAGGGCACGATCTCGCGAATTGCCAAATATCGAACATCGCATTCGCTTAAAGAATTTTTAAAAGA
C
Found at i:91242831 original size:10 final size:10
Alignment explanation
Indices: 91242812--91242859 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
91242802 TATAAAATGC
*
91242812 ATAAATATAT
1 ATAAAAATAT
*
91242822 TTAAAAATAT
1 ATAAAAATAT
91242832 AATAAAAA-AT
1 -ATAAAAATAT
91242842 -TAAAAATAT
1 ATAAAAATAT
91242851 ATAAAAATA
1 ATAAAAATA
91242860 AAAAATTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
8 6 0.19
9 2 0.06
10 18 0.56
11 6 0.19
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
ATAAAAATAT
Found at i:91242858 original size:17 final size:19
Alignment explanation
Indices: 91242822--91242857 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
91242812 ATAAATATAT
91242822 TTAAAAATATAATAAAAAA
1 TTAAAAATATAATAAAAAA
91242841 TTAAAAATAT-ATAAAAA
1 TTAAAAATATAATAAAAA
91242858 TAAAAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (19 bp):
TTAAAAATATAATAAAAAA
Found at i:91242863 original size:17 final size:19
Alignment explanation
Indices: 91242824--91242865 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
91242814 AAATATATTT
*
91242824 AAAAATATAATAAAAAATT
1 AAAAATATAATAAAAAATA
91242843 AAAAATAT-AT-AAAAATA
1 AAAAATATAATAAAAAATA
91242860 AAAAAT
1 AAAAAT
91242866 TTATTGTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 12 0.55
18 2 0.09
19 8 0.36
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAAATATAATAAAAAATA
Found at i:91245016 original size:30 final size:31
Alignment explanation
Indices: 91244980--91245046 Score: 111
Period size: 29 Copynumber: 2.2 Consensus size: 31
91244970 TTATTATAAA
*
91244980 TTTAAAAAATATTTATTTATTTTTATAT-TT
1 TTTAAAAAATATTTATCTATTTTTATATATT
91245010 TTT-AAAAATATTTATCTATTTTTATATATT
1 TTTAAAAAATATTTATCTATTTTTATATATT
91245040 TTTAAAA
1 TTTAAAA
91245047 TTTATTGTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 23 0.68
30 8 0.24
31 3 0.09
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (31 bp):
TTTAAAAAATATTTATCTATTTTTATATATT
Found at i:91245033 original size:10 final size:10
Alignment explanation
Indices: 91244991--91245043 Score: 54
Period size: 10 Copynumber: 5.4 Consensus size: 10
91244981 TTAAAAAATA
*
91244991 TTTATTTATT
1 TTTATATATT
91245001 TTTATAT-TT
1 TTTATATATT
* * *
91245010 TTTAAAAATA
1 TTTATATATT
*
91245020 TTTATCTATT
1 TTTATATATT
91245030 TTTATATATT
1 TTTATATATT
91245040 TTTA
1 TTTA
91245044 AAATTTATTG
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
9 7 0.21
10 26 0.79
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTATATATT
Found at i:91245041 original size:29 final size:29
Alignment explanation
Indices: 91244973--91245047 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
91244963 AAATTAATTA
* * *
91244973 TTATAAATTTAAAAAATATTTATTTATTT
1 TTATATATTTTAAAAATATTTATCTATTT
*
91245002 TTATATTTTTTAAAAATATTTATCTATTT
1 TTATATATTTTAAAAATATTTATCTATTT
*
91245031 TTATATATTTTTAAAAT
1 TTATATATTTTAAAAAT
91245048 TTATTGTTGT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (29 bp):
TTATATATTTTAAAAATATTTATCTATTT
Found at i:91252303 original size:22 final size:22
Alignment explanation
Indices: 91252275--91252326 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
91252265 TGGATTTTAC
91252275 TTTTATTTTATTTTCCATCGTA
1 TTTTATTTTATTTTCCATCGTA
*
91252297 TTTTATTTTATTTTCCATCGTG
1 TTTTATTTTATTTTCCATCGTA
91252319 TTTTATTT
1 TTTTATTT
91252327 AAATAAGAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.15, C:0.12, G:0.06, T:0.67
Consensus pattern (22 bp):
TTTTATTTTATTTTCCATCGTA
Found at i:91262737 original size:23 final size:22
Alignment explanation
Indices: 91262685--91262739 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
91262675 CCTAAATTTA
*
91262685 AAACCCAAAACATTACAAACCC
1 AAACCCAAAACAATACAAACCC
*
91262707 AAACCCAAAACTAATA-AAACCTT
1 AAACCCAAAAC-AATACAAACC-C
91262730 AAACCCAAAA
1 AAACCCAAAA
91262740 AGGCCCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 16 0.55
23 13 0.45
ACGTcount: A:0.58, C:0.31, G:0.00, T:0.11
Consensus pattern (22 bp):
AAACCCAAAACAATACAAACCC
Found at i:91265128 original size:127 final size:128
Alignment explanation
Indices: 91264896--91265133 Score: 324
Period size: 127 Copynumber: 1.9 Consensus size: 128
91264886 CTGTTTGCCC
*
91264896 AAATAATCAAATATTCCTTTGAAATTTCATCCGTACTTTGAAAATTCCTTAAAACTAAGGCAATG
1 AAATAATCAAATATTCCTTTGAAATTTCATCCGTA-TTTCAAAATT-CTTAAAACTAAGGCAATG
* * *
91264961 TTCAATGTTTGGAAATTCAGGGAACCGTGTCCTATTGTGCTGGGTTGCAATTTCCCGTTTGTTCG
64 TTCAATGTTTAGAAATTCAGGGAACCGTGCCCTACTGTGCTGGGTTGCAATTTCCCGTTTGTTCG
* *
91265026 AAATAATCAAATATTCCTTT-AGAATTTCACTCATGT-TTTCTAAATT-TTAAAAC-AAGGCAAT
1 AAATAATCAAATATTCCTTTGA-AATTTCA-TC-CGTATTTCAAAATTCTTAAAACTAAGGCAAT
*
91265087 GTTCAATGTTTAGAAATTC-GAGGAATCGTGCCCTACTGTGCTGGGTT
63 GTTCAATGTTTAGAAATTCAG-GGAACCGTGCCCTACTGTGCTGGGTT
91265134 TCGATTTTTC
Statistics
Matches: 97, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
126 1 0.01
127 49 0.51
128 7 0.07
129 1 0.01
130 35 0.36
131 2 0.02
132 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (128 bp):
AAATAATCAAATATTCCTTTGAAATTTCATCCGTATTTCAAAATTCTTAAAACTAAGGCAATGTT
CAATGTTTAGAAATTCAGGGAACCGTGCCCTACTGTGCTGGGTTGCAATTTCCCGTTTGTTCG
Found at i:91274237 original size:36 final size:36
Alignment explanation
Indices: 91274197--91274295 Score: 85
Period size: 36 Copynumber: 2.8 Consensus size: 36
91274187 GTCTAACTGA
91274197 AAATAAGTGCGCCCTACACTGGTCGGTAAAACCAAC
1 AAATAAGTGCGCCCTACACTGGTCGGTAAAACCAAC
* * * * * *
91274233 AAATATGTGTG-CCTAACATTGGTCGATATAACCGAC
1 AAATAAGTGCGCCCT-ACACTGGTCGGTAAAACCAAC
* * * *
91274269 -AATAAATGCACCCTGCGCTGGTCGGTA
1 AAATAAGTGCGCCCTACACTGGTCGGTA
91274296 GAATGGACAA
Statistics
Matches: 47, Mismatches: 14, Indels: 5
0.71 0.21 0.08
Matches are distributed among these distances:
35 18 0.38
36 29 0.62
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.22
Consensus pattern (36 bp):
AAATAAGTGCGCCCTACACTGGTCGGTAAAACCAAC
Found at i:91274273 original size:71 final size:71
Alignment explanation
Indices: 91274022--91274314 Score: 177
Period size: 71 Copynumber: 4.2 Consensus size: 71
91274012 GGTAGGACTG
* * * * *
91274022 ACAAATATGTGTGCCCAGCACTGGTCGATATAACCGAAAATAAAT--A--C-ACGCTAGTTGGTA
1 ACAAATATGTGTGTCCAACACTGGTCGATATAACCGAAAATAAATGCACCCTACACTGGTCGGTA
* *
91274082 AAACCG
66 AAATCA
* * * * **** ** * * *
91274088 ATAAATATGTGTG-CCTAGCACTAGTCAATATAGGTTAAAATAAAATGTGCGCTGCATTGGTCGG
1 ACAAATATGTGTGTCC-AACACTGGTCGATATAACCGAAAAT-AAATGCACCCTACACTGGTCGG
91274152 TAAAATCA
64 TAAAATCA
* * * * * * * * *
91274160 ATAGATATGTGTGTCCAACCCTGGTTGGTCTAACTGAAAATAAGTGCGCCCTACACTGGTCGGTA
1 ACAAATATGTGTGTCCAACACTGGTCGATATAACCGAAAATAAATGCACCCTACACTGGTCGGTA
*
91274225 AAACCA
66 AAATCA
* * * *
91274231 ACAAATATGTGTG-CCTAACATTGGTCGATATAACCGACAATAAATGCACCCTGCGCTGGTCGGT
1 ACAAATATGTGTGTCC-AACACTGGTCGATATAACCGAAAATAAATGCACCCTACACTGGTCGGT
* **
91274295 AGAATGG
65 AAAATCA
91274302 ACAAATATGTGTG
1 ACAAATATGTGTG
91274315 AAGACATTTC
Statistics
Matches: 169, Mismatches: 49, Indels: 13
0.73 0.21 0.06
Matches are distributed among these distances:
65 2 0.01
66 31 0.18
67 4 0.02
70 2 0.01
71 89 0.53
72 39 0.23
73 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (71 bp):
ACAAATATGTGTGTCCAACACTGGTCGATATAACCGAAAATAAATGCACCCTACACTGGTCGGTA
AAATCA
Done.