Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 269 of 373
Found at i:91279047 original size:42 final size:42
Alignment explanation
Indices: 91278922--91279048 Score: 109
Period size: 42 Copynumber: 3.0 Consensus size: 42
91278912 TAGGATTTCG
* *
91278922 GTATGTGATTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATC
1 GTATATGATTTCGTGTAAGACC-CTGTCTGAGACAG-TGGCATC
* * * *
91278964 G-ATTTGAGATTTACGTGTAAAACCATGTCT-AGGACATTGGCATC
1 GTATAT--GATTT-CGTGTAAGACCCTGTCTGA-GACAGTGGCATC
*
91279008 GTATATGATTTCGTGTAAGACCCTATCTGAGACAGTGGCAT
1 GTATATGATTTCGTGTAAGACCCTGTCTGAGACAGTGGCAT
91279049 TGATATTTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
41 3 0.04
42 25 0.37
43 11 0.16
44 25 0.37
45 3 0.04
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (42 bp):
GTATATGATTTCGTGTAAGACCCTGTCTGAGACAGTGGCATC
Found at i:91300268 original size:15 final size:15
Alignment explanation
Indices: 91300250--91300282 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
91300240 AAAAAAATCA
91300250 TAATT-AAAACATATT
1 TAATTAAAAACA-ATT
91300265 TAATTAAAAACAATT
1 TAATTAAAAACAATT
91300280 TAA
1 TAA
91300283 ATATAAATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (15 bp):
TAATTAAAAACAATT
Found at i:91304106 original size:16 final size:18
Alignment explanation
Indices: 91304087--91304119 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
91304077 CATACAAATT
91304087 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
91304103 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
91304120 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:91304751 original size:43 final size:43
Alignment explanation
Indices: 91304697--91304799 Score: 163
Period size: 43 Copynumber: 2.4 Consensus size: 43
91304687 CCGACATTAC
*
91304697 GCCTGCTAGGCTCGAAGCAC-GATATTAATTCACCAGCATTATA
1 GCCTGCTAGGCTCGAAGC-CTGATATTAACTCACCAGCATTATA
* *
91304740 GCCTGCTAGGCTCGAAGCCTGATATTAACTCACCGGTATTATA
1 GCCTGCTAGGCTCGAAGCCTGATATTAACTCACCAGCATTATA
91304783 GCCTGCTAGGCTCGAAG
1 GCCTGCTAGGCTCGAAG
91304800 GCTCGAATAG
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
42 1 0.02
43 55 0.98
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (43 bp):
GCCTGCTAGGCTCGAAGCCTGATATTAACTCACCAGCATTATA
Found at i:91314467 original size:29 final size:31
Alignment explanation
Indices: 91314420--91314486 Score: 75
Period size: 29 Copynumber: 2.2 Consensus size: 31
91314410 GTATTTTAAA
** * *
91314420 AAAAGTTTGTTTTTTATTTGAGCACTTT-G-
1 AAAAGTTTGACTTTCATTTAAGCACTTTAGT
*
91314449 AAAAGTTTGACTTTCATTTAAGCATTTTAGT
1 AAAAGTTTGACTTTCATTTAAGCACTTTAGT
91314480 AAAAGTT
1 AAAAGTT
91314487 AAGCATTTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 23 0.74
30 1 0.03
31 7 0.23
ACGTcount: A:0.31, C:0.07, G:0.15, T:0.46
Consensus pattern (31 bp):
AAAAGTTTGACTTTCATTTAAGCACTTTAGT
Found at i:91314502 original size:17 final size:19
Alignment explanation
Indices: 91314466--91314503 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
91314456 TGACTTTCAT
91314466 TTAAGCATTTTAGTAAAAG
1 TTAAGCATTTTAGTAAAAG
91314485 TTAAGCATTTT-G-AAAAG
1 TTAAGCATTTTAGTAAAAG
91314502 TT
1 TT
91314504 TGACCCTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 1 0.05
19 11 0.58
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.39
Consensus pattern (19 bp):
TTAAGCATTTTAGTAAAAG
Found at i:91314541 original size:29 final size:29
Alignment explanation
Indices: 91314497--91314565 Score: 120
Period size: 29 Copynumber: 2.3 Consensus size: 29
91314487 AAGCATTTTG
91314497 AAAAGTTTGACCCTTACATGCATAATTCCTT
1 AAAAG-TT-ACCCTTACATGCATAATTCCTT
91314528 AAAAGTTACCCTTACATGCATAATTCCTT
1 AAAAGTTACCCTTACATGCATAATTCCTT
91314557 AAAAGTTAC
1 AAAAGTTAC
91314566 ATCTCAATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
29 31 0.82
30 2 0.05
31 5 0.13
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.33
Consensus pattern (29 bp):
AAAAGTTACCCTTACATGCATAATTCCTT
Found at i:91322433 original size:22 final size:23
Alignment explanation
Indices: 91322408--91322453 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
91322398 ATAATTGCTT
91322408 TTATAGATATATACATATA-TTA
1 TTATAGATATATACATATACTTA
* * *
91322430 TTATATATTTCTACATATACTTA
1 TTATAGATATATACATATACTTA
91322453 T
1 T
91322454 ACACATTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (23 bp):
TTATAGATATATACATATACTTA
Found at i:91322461 original size:22 final size:22
Alignment explanation
Indices: 91322419--91322461 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
91322409 TATAGATATA
* *
91322419 TACATATATTATTATATATTTC
1 TACATATATTATTACACATTTC
91322441 TACATATACTTA-TACACATTT
1 TACATATA-TTATTACACATTT
91322462 TTTTTGTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.37, C:0.14, G:0.00, T:0.49
Consensus pattern (22 bp):
TACATATATTATTACACATTTC
Found at i:91324811 original size:19 final size:20
Alignment explanation
Indices: 91324771--91324814 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
91324761 GTCTCTTTAG
* *
91324771 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
91324790 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
91324809 GCATTA
1 GCATTA
91324815 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:91329199 original size:43 final size:43
Alignment explanation
Indices: 91329151--91329284 Score: 116
Period size: 43 Copynumber: 3.1 Consensus size: 43
91329141 AAAACAAAGC
91329151 CTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGAT
1 CTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGAT
* ** * * * ** *
91329194 CTTGCCTTCCA--GCGTTAACAACGAAGCAGATCGAA-AA-CA-AGC
1 CTTGCCTT-CATTG-GTT-GCAGTGGAGCTGGTTAAAGAAGCAGA-T
91329236 CTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGAT
1 CTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGAT
91329279 CTTGCC
1 CTTGCC
91329285 CTCCTGCATT
Statistics
Matches: 64, Mismatches: 18, Indels: 18
0.64 0.18 0.18
Matches are distributed among these distances:
41 13 0.20
42 16 0.25
43 22 0.34
44 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (43 bp):
CTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGAT
Found at i:91329281 original size:85 final size:85
Alignment explanation
Indices: 91329137--91329416 Score: 407
Period size: 85 Copynumber: 3.2 Consensus size: 85
91329127 ATCAGTGAAC
91329137 ATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTT
1 ATCGAAAACAAA-CCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTT
* * *
91329202 CCAGCGTTAACAACGAAGCAG
65 CCTGCATTAACAGCGAAGCAG
* *
91329223 ATCGAAAACAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGCCCTC
1 ATCGAAAACAAACCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTTC
*
91329288 CTGCATTAATAGCGAAGCAG
66 CTGCATTAACAGCGAAGCAG
* * * * * *
91329308 ATCGAAAATAAAACCTTGCCTCCATTGGTTGCAATGGAGCTGTTTAAAGATAGCAGATCCTGCAT
1 ATCGAAAA-CAAACCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGA-AGCAGATCTTGCCT
91329373 TCCTGCATTAACAGCGAAGCAG
64 TCCTGCATTAACAGCGAAGCAG
91329395 ATCGAAGACACAAACCTTGCCT
1 ATCGAA-A-ACAAACCTTGCCT
91329417 CTCTCGGGTT
Statistics
Matches: 174, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
85 76 0.44
86 47 0.27
87 38 0.22
88 12 0.07
89 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.24
Consensus pattern (85 bp):
ATCGAAAACAAACCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGCCTTC
CTGCATTAACAGCGAAGCAG
Found at i:91329586 original size:88 final size:88
Alignment explanation
Indices: 91329436--91329596 Score: 223
Period size: 88 Copynumber: 1.8 Consensus size: 88
91329426 TGCAGAGCTC
* * *
91329436 TCTCGGTTGTGGTGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGTATTGACAGCGAAGCAG
1 TCTCGGTTGTAGTGGAGCTAGTTGAAGACAACAGATCTTGCCTTCCTGTACTGACAGCGAAGCAG
*
91329501 GTCGAAGACACAAACCTCGCCTT
66 ATCGAAGACACAAACCTCGCCTT
* * *** * *
91329524 TCTCGGTTGTAGTGGAGCTAGTTGTAGATAGTGGATCTTGCCTTCCTGTACTGACGGTGAAGCAG
1 TCTCGGTTGTAGTGGAGCTAGTTGAAGACAACAGATCTTGCCTTCCTGTACTGACAGCGAAGCAG
91329589 ATCGAAGA
66 ATCGAAGA
91329597 AACCAGATCT
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
88 62 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (88 bp):
TCTCGGTTGTAGTGGAGCTAGTTGAAGACAACAGATCTTGCCTTCCTGTACTGACAGCGAAGCAG
ATCGAAGACACAAACCTCGCCTT
Found at i:91329633 original size:44 final size:43
Alignment explanation
Indices: 91329584--91329677 Score: 115
Period size: 40 Copynumber: 2.3 Consensus size: 43
91329574 CTGACGGTGA
* *
91329584 AGCAGATCGAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGG
1 AGCAGATCGAAGAAACAAG-TCTTATCTCCCTAAGCAGCAGTGG
* *
91329628 AGCAGATC---GCATCAAGTCTTATCTCCCTAAGCAGCAGTGG
1 AGCAGATCGAAGAAACAAGTCTTATCTCCCTAAGCAGCAGTGG
91329668 AGCAGA-CGAA
1 AGCAGATCGAA
91329678 AGAATAAATC
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
39 1 0.02
40 29 0.67
41 5 0.12
44 8 0.19
ACGTcount: A:0.33, C:0.24, G:0.23, T:0.19
Consensus pattern (43 bp):
AGCAGATCGAAGAAACAAGTCTTATCTCCCTAAGCAGCAGTGG
Found at i:91331157 original size:22 final size:23
Alignment explanation
Indices: 91331132--91331177 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
91331122 ATAATTGCTT
91331132 TTATAGATATATACATATA-TTA
1 TTATAGATATATACATATACTTA
* * *
91331154 TTATATATTTCTACATATACTTA
1 TTATAGATATATACATATACTTA
91331177 T
1 T
91331178 ACACATTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (23 bp):
TTATAGATATATACATATACTTA
Found at i:91331185 original size:22 final size:22
Alignment explanation
Indices: 91331143--91331185 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
91331133 TATAGATATA
* *
91331143 TACATATATTATTATATATTTC
1 TACATATATTATTACACATTTC
91331165 TACATATACTTA-TACACATTT
1 TACATATA-TTATTACACATTT
91331186 TTTTTGTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.37, C:0.14, G:0.00, T:0.49
Consensus pattern (22 bp):
TACATATATTATTACACATTTC
Found at i:91332756 original size:32 final size:34
Alignment explanation
Indices: 91332690--91332759 Score: 85
Period size: 32 Copynumber: 2.1 Consensus size: 34
91332680 TGATTTTTAA
*
91332690 AATTAAATAATAAAATTTAATATAGTATTTAAAT
1 AATTAAATAATAAAATTTAATATAGTATTAAAAT
91332724 AATT-AATAAT-AAATTTAA-ATATGT-TTAAAAAT
1 AATTAAATAATAAAATTTAATATA-GTATT-AAAAT
91332756 AATT
1 AATT
91332760 TATCAAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
31 5 0.15
32 18 0.55
33 6 0.18
34 4 0.12
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (34 bp):
AATTAAATAATAAAATTTAATATAGTATTAAAAT
Found at i:91337054 original size:19 final size:20
Alignment explanation
Indices: 91337007--91337054 Score: 53
Period size: 23 Copynumber: 2.3 Consensus size: 20
91336997 GGTAATGGTA
91337007 ATATACATTTGTAATAAATAC
1 ATATACATTTGTAAT-AATAC
*
91337028 ATGCATACATTTGTAAT-ATAT
1 AT--ATACATTTGTAATAATAC
91337049 ATATAC
1 ATATAC
91337055 TTACTTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 4 0.17
21 7 0.29
23 13 0.54
ACGTcount: A:0.44, C:0.10, G:0.06, T:0.40
Consensus pattern (20 bp):
ATATACATTTGTAATAATAC
Found at i:91337088 original size:5 final size:5
Alignment explanation
Indices: 91337078--91337147 Score: 113
Period size: 5 Copynumber: 13.4 Consensus size: 5
91337068 AAGAAAATAT
91337078 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
91337128 TTATTA TTATTA TTATTA TA
1 -TATTA -TATTA -TATTA TA
91337148 ATTAAAACAA
Statistics
Matches: 64, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
5 47 0.73
6 17 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:91341209 original size:17 final size:17
Alignment explanation
Indices: 91341188--91341231 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
91341178 ATGGAATTAG
91341188 AATTTAGTTGAGAAAATT
1 AATTTAGTT-AGAAAATT
* *
91341206 -ATTTAATTATAAAATT
1 AATTTAGTTAGAAAATT
91341222 AATTTAGTTA
1 AATTTAGTTA
91341232 ATTTAATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (17 bp):
AATTTAGTTAGAAAATT
Found at i:91343617 original size:18 final size:16
Alignment explanation
Indices: 91343575--91343617 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 16
91343565 ATTGTAATTT
91343575 TTTAAAAAATAAAAAA
1 TTTAAAAAATAAAAAA
91343591 TTATGAAAAAATAAAAACTA
1 TT-T-AAAAAATAAAAA--A
91343611 TTTAAAA
1 TTTAAAA
91343618 TTCAAAGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 2 0.09
17 1 0.04
18 16 0.70
19 1 0.04
20 3 0.13
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (16 bp):
TTTAAAAAATAAAAAA
Found at i:91343648 original size:20 final size:19
Alignment explanation
Indices: 91343625--91343677 Score: 63
Period size: 18 Copynumber: 2.7 Consensus size: 19
91343615 AAATTCAAAG
* *
91343625 TTAAAAATAAAAATTATTTT
1 TTAAAAATATAAATTA-ATT
91343645 TTAAAAAATATAAA-TAATT
1 TT-AAAAATATAAATTAATT
91343664 TTAAAAATATAAAT
1 TTAAAAATATAAAT
91343678 ATAAATTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 11 0.38
19 4 0.14
20 4 0.14
21 10 0.34
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
TTAAAAATATAAATTAATT
Found at i:91343671 original size:18 final size:19
Alignment explanation
Indices: 91343643--91343678 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
91343633 AAAAATTATT
91343643 TTTTAAAAAATATAAATAA
1 TTTTAAAAAATATAAATAA
91343662 TTTT-AAAAATATAAATA
1 TTTTAAAAAATATAAATA
91343679 TAAATTACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TTTTAAAAAATATAAATAA
Found at i:91343681 original size:20 final size:20
Alignment explanation
Indices: 91343625--91343681 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
91343615 AAATTCAAAG
* *
91343625 TTAAAAATAAAAAT-TATTTT
1 TTAAAAATATAAATATA-ATT
91343645 TTAAAAA-ATATAA-ATAATT
1 TTAAAAATATA-AATATAATT
91343664 TTAAAAATATAAATATAA
1 TTAAAAATATAAATATAA
91343682 ATTACAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
19 13 0.42
20 18 0.58
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
TTAAAAATATAAATATAATT
Found at i:91343690 original size:20 final size:18
Alignment explanation
Indices: 91343648--91343690 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
91343638 TTATTTTTTA
**
91343648 AAAAATATAAATAATTTT
1 AAAAATATAAATAAAATT
91343666 AAAAATATAAATATAAATT
1 AAAAATATAAATA-AAATT
91343685 ACAAAA
1 A-AAAA
91343691 CTCAATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 13 0.62
19 4 0.19
20 4 0.19
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (18 bp):
AAAAATATAAATAAAATT
Found at i:91344156 original size:26 final size:24
Alignment explanation
Indices: 91344127--91344181 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 24
91344117 AATAAATTTT
91344127 AAAAAATTTTAAAACTAAAAAAGA
1 AAAAAATTTTAAAACTAAAAAAGA
* * *
91344151 TAAAAAATATTTAAAATTCAAAAATA
1 -AAAAAAT-TTTAAAACTAAAAAAGA
91344177 AAAAA
1 AAAAA
91344182 GAATTATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 12 0.46
26 14 0.54
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.24
Consensus pattern (24 bp):
AAAAAATTTTAAAACTAAAAAAGA
Found at i:91344173 original size:25 final size:24
Alignment explanation
Indices: 91344126--91344181 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 24
91344116 AAATAAATTT
91344126 TAAAAAATTTTAAAACTAAAAAAGA
1 TAAAAAATTTTAAAACTAAAAAA-A
**
91344151 TAAAAAATATTTAAAA-TTCAAAAA
1 TAAAAAAT-TTTAAAACTAAAAAAA
91344175 TAAAAAA
1 TAAAAAA
91344182 GAATTATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 8 0.29
25 13 0.46
26 7 0.25
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.25
Consensus pattern (24 bp):
TAAAAAATTTTAAAACTAAAAAAA
Found at i:91346734 original size:40 final size:40
Alignment explanation
Indices: 91346646--91346723 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
91346636 GTAAGATTAT
*
91346646 ACTGAAAGATGTTATTACATCATAAATGAGTAAGACCACA
1 ACTGAAAGATGTTATGACATCATAAATGAGTAAGACCACA
*
91346686 ACTGAAAGATGTTATGACATTATAAATGAGTAAGACCA
1 ACTGAAAGATGTTATGACATCATAAATGAGTAAGACCA
91346724 TAGTTGAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.45, C:0.13, G:0.17, T:0.26
Consensus pattern (40 bp):
ACTGAAAGATGTTATGACATCATAAATGAGTAAGACCACA
Found at i:91347403 original size:40 final size:40
Alignment explanation
Indices: 91347348--91347451 Score: 163
Period size: 40 Copynumber: 2.6 Consensus size: 40
91347338 AAATTTAAAT
* * **
91347348 ATGAGTGAGATCATAGCTGAAAGATGTTATGGTATCATAA
1 ATGAGTAAGACCATAGCTGAAAGATGTTATGACATCATAA
*
91347388 ATGAGTAAGACCATAGCTAAAAGATGTTATGACATCATAA
1 ATGAGTAAGACCATAGCTGAAAGATGTTATGACATCATAA
91347428 ATGAGTAAGACCATAGCTGAAAGA
1 ATGAGTAAGACCATAGCTGAAAGA
91347452 CACCATGGCA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.42, C:0.11, G:0.22, T:0.25
Consensus pattern (40 bp):
ATGAGTAAGACCATAGCTGAAAGATGTTATGACATCATAA
Found at i:91348026 original size:717 final size:716
Alignment explanation
Indices: 91346628--91348030 Score: 2067
Period size: 717 Copynumber: 2.0 Consensus size: 716
91346618 GCTATACACC
* * *
91346628 AAATATGAGTAAGATTATACTGAAAGATGTTATTACATCATAAATGAGTAAGACCACAACTGAAA
1 AAATATGAGTAAGATCATACTGAAAGATGTTATGACATCATAAATGAGTAAGACCACAACTAAAA
* *
91346693 GATGTTATGACATTATAAATGAGTAAGACCATAGTTGAAAGACACCATAACATCCTCTGATAGTC
66 GATGTTATGACATCATAAATGAGTAAGACCATAGCTGAAAGACACCATAACATCCTCTGATAGTC
* * * * *
91346758 CATCGAGACAGTAAACACGAGATTATATCGTGTAAGACCATAGATGAAAGACGCTATAGCATCGT
131 CATCGAAACAGTAAACACGAGATTATATCATGTAAGACCATAGATAAAAGACGCCATAGCATCCT
* *
91346823 AGATAGTCCGTCGGGACAACAAACACGGGATAATCCACCGAGACAATAATCATGGGACAATTCGC
196 AGATAATCCATCGGGACAACAAACACGGGATAATCCACCGAGACAATAATCATGGGACAATTCGC
* * *
91346888 CAAGACAGAAAGGGTGGTAACATCCACCAAGACAATTAGCTTGGAAAGAAAGAGTGAAAGACGAT
261 CAAGACAGAAAGCGTGGTAACATCCACCAAGACAATTAGCTTAGAAAGAAAGAGTGAAAGACCAT
** * * *
91346953 AAATCAGTTATGGCATCATGAAGACTTAATCGATAAGGTGAACATGAGAGTTTAAAAGGTGTAAA
326 AAATCAGTTATAACATCATGAAGACTCAACCGATAAGGTGAACACGAGAGTTTAAAAGGTGTAAA
* *
91347018 TTCTAGGCTCGTTGATAGAGGTTGGTAAAGATCATTGAATGAAGTGGACTTTAAGGCTTATTGAA
391 TTCTAGGCTCGGTGATAGAGGTTGGTAAAGATCACTGAATGAAGTGGACTTTAAGGCTTATTGAA
* * *
91347083 CAAGATGATATATTTAATCAAGGACCGAGACTTAAGAGTCTGCGGATAAAGGGGGGAATTAAGGG
456 CAAGAGGATATATTTAATCAAGGACCGAGACTTAAGAGTCTGCAGACAAAGGGGGGAATTAAGGG
* * * *
91347148 TGATTATGTCCATCGAGGTTATACGGGGCTAAGTCACCTGGGTTGGCAAAAGAAGGAATCTGTTA
521 CGATTATGTCCATCAAGGTTATACGGGGCTAAGTCACCCGGGTTGGCAAAAGAAGAAATCTGTTA
* * * *
91347213 AAGACTAACTTGGGGCGGGTAGTCTACCAGGAAATATAGGGGATAAAAATTTGAAACCTAAGGAA
586 AAGACTAACCTGGGGCGGGCAGTCTACCAAGAAATATAGGGGATAAAAATTTAAAACCTAAGGAA
*
91347278 ATAAATGTCAGACAACCAATGACCGACATTGGGTCTTCCGATATATGTTGTGAGAGAAAAAAATT
651 ATAAATGTCAGACAACCAATGACCAACATTGGGTCTTCCGATATATGTTGTGAGAGAAAAAAATT
91347343 T
716 T
* ** * *
91347344 AAATATGAGTGAGATCATAGCTGAAAGATGTTATGGTATCATAAATGAGTAAGACCATAGCTAAA
1 AAATATGAGTAAGATCATA-CTGAAAGATGTTATGACATCATAAATGAGTAAGACCACAACTAAA
** *
91347409 AGATGTTATGACATCATAAATGAGTAAGACCATAGCTGAAAGACACCATGGCATCCTTTGATAGT
65 AGATGTTATGACATCATAAATGAGTAAGACCATAGCTGAAAGACACCATAACATCCTCTGATAGT
* * * * * *
91347474 TCGTCGAAATAGTAAACACGAGGTTATATCATGTAAGACCATAGCTAAAAGATGCCATAGCATCC
130 CCATCGAAACAGTAAACACGAGATTATATCATGTAAGACCATAGATAAAAGACGCCATAGCATCC
* * * * * *
91347539 TAGATAATTCATCGGGATAATAAACACGGGATAATCTATCGAGACAATAATCATGGGGCAATTCG
195 TAGATAATCCATCGGGACAACAAACACGGGATAATCCACCGAGACAATAATCATGGGACAATTCG
* * *
91347604 CCAAGACAGAAAGCGTGTTAACATCTACCAAGACAATTTGCTTAGAAAGAAAGAGTGAAAGACCA
260 CCAAGACAGAAAGCGTGGTAACATCCACCAAGACAATTAGCTTAGAAAGAAAGAGTGAAAGACCA
91347669 TAAATCAGTTATAACATCATGAAGACTCAACCGATAAGGTGAACACGAGAGTTTAAAAGGTGTAA
325 TAAATCAGTTATAACATCATGAAGACTCAACCGATAAGGTGAACACGAGAGTTTAAAAGGTGTAA
* * * * ** *
91347734 ATTCTAGGTTCGGTGGTGGTGGTTGGTAAAGATTGCTGAATGGAGTGGA-TTCTAAGGCTTATTG
390 ATTCTAGGCTCGGTGATAGAGGTTGGTAAAGATCACTGAATGAAGTGGACTT-TAAGGCTTATTG
* * * * *
91347798 AACAAGAGGATATATTTAATCAAGGACCGATACTTAAGGATTC-GTAGACAAATGGGGTAATTAA
454 AACAAGAGGATATATTTAATCAAGGACCGAGACTTAA-GAGTCTGCAGACAAAGGGGGGAATTAA
* * *
91347862 GGGCGGTTATGTCCATCAAGGTTATATGGGGCTAAGTCACCCGGGTTGGTAAAAGAAGAAATCTG
518 GGGCGATTATGTCCATCAAGGTTATACGGGGCTAAGTCACCCGGGTTGGCAAAAGAAGAAATCTG
* *
91347927 TTAAGGACTAACCTGGGGCGGGCAGTGC-ACCAAGAAATA-GGGGCGATAAAAATTTAAAACCTA
583 TTAAAGACTAACCTGGGGCGGGCAGT-CTACCAAGAAATATAGGG-GATAAAAATTTAAAACCTA
91347990 AGGAAATAAATGTCAGACAACCAATGACCAACATTGGGTCT
646 AGGAAATAAATGTCAGACAACCAATGACCAACATTGGGTCT
91348031 CCCATTCAAG
Statistics
Matches: 608, Mismatches: 74, Indels: 9
0.88 0.11 0.01
Matches are distributed among these distances:
716 22 0.04
717 581 0.96
718 5 0.01
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (716 bp):
AAATATGAGTAAGATCATACTGAAAGATGTTATGACATCATAAATGAGTAAGACCACAACTAAAA
GATGTTATGACATCATAAATGAGTAAGACCATAGCTGAAAGACACCATAACATCCTCTGATAGTC
CATCGAAACAGTAAACACGAGATTATATCATGTAAGACCATAGATAAAAGACGCCATAGCATCCT
AGATAATCCATCGGGACAACAAACACGGGATAATCCACCGAGACAATAATCATGGGACAATTCGC
CAAGACAGAAAGCGTGGTAACATCCACCAAGACAATTAGCTTAGAAAGAAAGAGTGAAAGACCAT
AAATCAGTTATAACATCATGAAGACTCAACCGATAAGGTGAACACGAGAGTTTAAAAGGTGTAAA
TTCTAGGCTCGGTGATAGAGGTTGGTAAAGATCACTGAATGAAGTGGACTTTAAGGCTTATTGAA
CAAGAGGATATATTTAATCAAGGACCGAGACTTAAGAGTCTGCAGACAAAGGGGGGAATTAAGGG
CGATTATGTCCATCAAGGTTATACGGGGCTAAGTCACCCGGGTTGGCAAAAGAAGAAATCTGTTA
AAGACTAACCTGGGGCGGGCAGTCTACCAAGAAATATAGGGGATAAAAATTTAAAACCTAAGGAA
ATAAATGTCAGACAACCAATGACCAACATTGGGTCTTCCGATATATGTTGTGAGAGAAAAAAATT
T
Found at i:91349552 original size:20 final size:20
Alignment explanation
Indices: 91349523--91349573 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
91349513 TTAACTTTAT
*
91349523 ATTAAAAAATAAAAAAAATA
1 ATTAATAAATAAAAAAAATA
* *
91349543 ATTAATAAATAATAAATATA
1 ATTAATAAATAAAAAAAATA
**
91349563 AAAAATAAATA
1 ATTAATAAATA
91349574 TACGATGGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (20 bp):
ATTAATAAATAAAAAAAATA
Found at i:91349569 original size:13 final size:13
Alignment explanation
Indices: 91349529--91349575 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
91349519 TTATATTAAA
*
91349529 AAATAAAAAAAAT
1 AAATATAAAAAAT
* *
91349542 AATTAATAAATAAT
1 AAAT-ATAAAAAAT
91349556 AAATATAAAAAAT
1 AAATATAAAAAAT
91349569 AAATATA
1 AAATATA
91349576 CGATGGGATT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
13 18 0.64
14 10 0.36
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
AAATATAAAAAAT
Found at i:91350268 original size:31 final size:31
Alignment explanation
Indices: 91350233--91350304 Score: 76
Period size: 31 Copynumber: 2.3 Consensus size: 31
91350223 TAAAAAAAAC
*
91350233 AATTTAACT-TTTTCGAAAAA-GTTAAAGATCA
1 AATTTAACTCTTTT--AAAAAGGTTAAAGACCA
* * *
91350264 AATTTATCTCTTTTAAAAAGGTTGATGACCA
1 AATTTAACTCTTTTAAAAAGGTTAAAGACCA
91350295 AATTTAACTC
1 AATTTAACTC
91350305 AAGAAAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
30 5 0.15
31 25 0.74
32 4 0.12
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (31 bp):
AATTTAACTCTTTTAAAAAGGTTAAAGACCA
Found at i:91359429 original size:10 final size:10
Alignment explanation
Indices: 91359416--91359475 Score: 50
Period size: 10 Copynumber: 6.0 Consensus size: 10
91359406 TATAATTATT
91359416 TTATATTAAA
1 TTATATTAAA
*
91359426 TTATATGAAA
1 TTATATTAAA
* * **
91359436 ATATTTTTATT
1 TTA-TATTAAA
91359447 TTATATTAAA
1 TTATATTAAA
91359457 TTATATTAAA
1 TTATATTAAA
*
91359467 ATAT-TTAAA
1 TTATATTAAA
91359476 AAAATTTACT
Statistics
Matches: 38, Mismatches: 11, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
9 5 0.13
10 28 0.74
11 5 0.13
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (10 bp):
TTATATTAAA
Found at i:91359439 original size:31 final size:31
Alignment explanation
Indices: 91359404--91359470 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
91359394 AAACATCCTT
91359404 AATATAATTATTTTATATTAAATTATATGAA
1 AATATAATTATTTTATATTAAATTATATGAA
** *
91359435 AATATTTTTATTTTATATTAAATTATATTAA
1 AATATAATTATTTTATATTAAATTATATGAA
91359466 AATAT
1 AATAT
91359471 TTAAAAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.52
Consensus pattern (31 bp):
AATATAATTATTTTATATTAAATTATATGAA
Found at i:91359471 original size:31 final size:31
Alignment explanation
Indices: 91359411--91359472 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
91359401 CTTAATATAA
91359411 TTATTTTATATTAAATTATATGAAAATATTT
1 TTATTTTATATTAAATTATATGAAAATATTT
*
91359442 TTATTTTATATTAAATTATATTAAAATATTT
1 TTATTTTATATTAAATTATATGAAAATATTT
91359473 AAAAAAATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (31 bp):
TTATTTTATATTAAATTATATGAAAATATTT
Found at i:91363959 original size:28 final size:28
Alignment explanation
Indices: 91363928--91363983 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
91363918 TTTAAGAAAG
* *
91363928 CAAAGGCAGAATATTAATCAATATAAAA
1 CAAAGGCAAAATATTAATCAATAAAAAA
91363956 CAAAGGCAAAATATTAATCAATAAAAAA
1 CAAAGGCAAAATATTAATCAATAAAAAA
91363984 AGTATTATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.61, C:0.11, G:0.09, T:0.20
Consensus pattern (28 bp):
CAAAGGCAAAATATTAATCAATAAAAAA
Found at i:91367782 original size:47 final size:47
Alignment explanation
Indices: 91367661--91367793 Score: 189
Period size: 46 Copynumber: 2.9 Consensus size: 47
91367651 ATAATCTCAC
* *
91367661 CCATAATGAACTCGGAACGCAACTCAACGAGCTCGGGTG-TTCGCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCGCAT
* * *
91367707 CCATAATGAACTCGAAACACAAATCAACGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCGCAT
*
91367753 CCATAGGTGAACTCGGAACGCAACTCAACGAGTTCGGATGC
1 CCATA-ATGAACTCGGAACGCAACTCAACGAGTTCGGATGC
91367794 CTCATAATTC
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
46 43 0.57
47 33 0.43
ACGTcount: A:0.32, C:0.26, G:0.23, T:0.20
Consensus pattern (47 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCGCAT
Found at i:91370340 original size:10 final size:10
Alignment explanation
Indices: 91370307--91370332 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
91370297 ATTTTAGCTT
91370307 TTATCTTTAA
1 TTATCTTTAA
91370317 TTATCTTTAA
1 TTATCTTTAA
91370327 TTATCT
1 TTATCT
91370333 GTATTTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:91371306 original size:28 final size:27
Alignment explanation
Indices: 91371243--91371306 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 27
91371233 CTTCAGAATA
91371243 CAGTCAAATATAGTTTGGGCTTGAGCC
1 CAGTCAAATATAGTTTGGGCTTGAGCC
*
91371270 CATTACAAAT-TCAGTTTGGGGCCTT-AGCC
1 CAGT-CAAATAT-AGTTT-GGG-CTTGAGCC
91371299 CAGTCAAA
1 CAGTCAAA
91371307 CACAGCCTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
27 4 0.13
28 14 0.45
29 10 0.32
30 3 0.10
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (27 bp):
CAGTCAAATATAGTTTGGGCTTGAGCC
Found at i:91376649 original size:16 final size:16
Alignment explanation
Indices: 91376624--91376661 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
91376614 TAGAGCAATC
*
91376624 TTGTTTAGAATAGTTG
1 TTGTTCAGAATAGTTG
*
91376640 TTGTTCAGAATATTTG
1 TTGTTCAGAATAGTTG
91376656 TTGTTC
1 TTGTTC
91376662 GAAAATAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.21, C:0.05, G:0.21, T:0.53
Consensus pattern (16 bp):
TTGTTCAGAATAGTTG
Found at i:91380521 original size:43 final size:44
Alignment explanation
Indices: 91380473--91380578 Score: 126
Period size: 43 Copynumber: 2.5 Consensus size: 44
91380463 TTACCGAGAA
* * *
91380473 GTGATTACATGTAATACCATGTCTAGGACATTGGCATTG-TATT
1 GTGATTACATGTAAAACCATGTCTAGGACAGTGGCATCGATATT
** *
91380516 GTGATTATGTGTAAAACCATGTCTGGGACAGTGGCATCGATATT
1 GTGATTACATGTAAAACCATGTCTAGGACAGTGGCATCGATATT
* *
91380560 -TGATAACATGTAAGACCAT
1 GTGATTACATGTAAAACCAT
91380579 ATTTGGGATA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 48 0.92
44 4 0.08
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (44 bp):
GTGATTACATGTAAAACCATGTCTAGGACAGTGGCATCGATATT
Found at i:91382778 original size:34 final size:34
Alignment explanation
Indices: 91382726--91382815 Score: 119
Period size: 34 Copynumber: 2.7 Consensus size: 34
91382716 TACAATGTTA
* * *
91382726 TTTGGTGAGTTGGATGGATTAACTCATATGAGTT
1 TTTGGTGTGTTAGATGGATTAACTCATACGAGTT
* *
91382760 TTTGGTGTGTTAGTTGGATTAGCTCATACGAGTT
1 TTTGGTGTGTTAGATGGATTAACTCATACGAGTT
*
91382794 TTTGGTGTGTTGGATGG-TTAAC
1 TTTGGTGTGTTAGATGGATTAAC
91382816 CGTATACTTG
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
33 4 0.08
34 44 0.92
ACGTcount: A:0.19, C:0.07, G:0.31, T:0.43
Consensus pattern (34 bp):
TTTGGTGTGTTAGATGGATTAACTCATACGAGTT
Found at i:91384594 original size:4 final size:4
Alignment explanation
Indices: 91384585--91384618 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
91384575 AAGTTTTATT
91384585 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
91384619 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:91384626 original size:22 final size:22
Alignment explanation
Indices: 91384568--91384627 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
91384558 AAGTGGCCCA
*
91384568 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
91384592 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
91384613 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
91384628 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:91388304 original size:4 final size:4
Alignment explanation
Indices: 91388295--91388332 Score: 58
Period size: 4 Copynumber: 9.0 Consensus size: 4
91388285 AAGTTTTATT
91388295 TTTA TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
91388333 AATTTTTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 24 0.75
5 8 0.25
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:91388312 original size:12 final size:13
Alignment explanation
Indices: 91388289--91388332 Score: 63
Period size: 12 Copynumber: 3.3 Consensus size: 13
91388279 GTTGTAAAGT
91388289 TTTATTTTTATTTA
1 TTTA-TTTTATTTA
91388303 TTTA-TTTATTTA
1 TTTATTTTATTTA
91388315 TTTATTTTATTTA
1 TTTATTTTATTTA
91388328 GTTTA
1 -TTTA
91388333 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.43
13 8 0.29
14 8 0.29
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:91388340 original size:26 final size:26
Alignment explanation
Indices: 91388289--91388341 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
91388279 GTTGTAAAGT
*
91388289 TTTATTTTTATTTATTTATTTATTTA
1 TTTATTTTTATTTATTTAATTATTTA
91388315 TTTA-TTTTATTTAGTTTAAATT-TTTA
1 TTTATTTTTATTTA-TTT-AATTATTTA
91388341 T
1 T
91388342 ATTCAGTCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 9 0.38
26 12 0.50
27 3 0.12
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (26 bp):
TTTATTTTTATTTATTTAATTATTTA
Found at i:91392453 original size:13 final size:13
Alignment explanation
Indices: 91392437--91392465 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
91392427 TAATAATTAA
91392437 AAAAGACTAAAAT
1 AAAAGACTAAAAT
91392450 AAAAGACTAAAAT
1 AAAAGACTAAAAT
91392463 AAA
1 AAA
91392466 TTTTTTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.72, C:0.07, G:0.07, T:0.14
Consensus pattern (13 bp):
AAAAGACTAAAAT
Found at i:91397649 original size:14 final size:11
Alignment explanation
Indices: 91397618--91397647 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
91397608 AGAATAATAA
91397618 GAGAAGAAATG
1 GAGAAGAAATG
91397629 GAGAAGAAATG
1 GAGAAGAAATG
91397640 GAGAAGAA
1 GAGAAGAA
91397648 GAGGAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.37, T:0.07
Consensus pattern (11 bp):
GAGAAGAAATG
Found at i:91399869 original size:20 final size:19
Alignment explanation
Indices: 91399844--91399897 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
91399834 AAAATATAAT
91399844 ATAAATTTTAAAATAAATAC
1 ATAAATTTTAAAAT-AATAC
* * *
91399864 ATAAATATATAAAGTAATAT
1 ATAAAT-TTTAAAATAATAC
91399884 ATAATATTTTAAAA
1 ATAA-ATTTTAAAA
91399898 ATATCAAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
20 19 0.70
21 8 0.30
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (19 bp):
ATAAATTTTAAAATAATAC
Found at i:91399896 original size:28 final size:28
Alignment explanation
Indices: 91399865--91399919 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
91399855 AATAAATACA
*
91399865 TAAATATAT-AAAGTAATATATAATATTT
1 TAAAAATATCAAAGTAATATA-AATATTT
* *
91399893 TAAAAATATCAAATTTATATAAATATT
1 TAAAAATATCAAAGTAATATAAATATT
91399920 AATAATTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 14 0.61
29 9 0.39
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (28 bp):
TAAAAATATCAAAGTAATATAAATATTT
Found at i:91400128 original size:23 final size:23
Alignment explanation
Indices: 91400102--91400148 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
91400092 TTGGCTTCAA
*
91400102 TTTCT-AATTTGATATCTGAGTTT
1 TTTCTCAATTTGATACCT-AGTTT
91400125 TTTCTCCAATTTGATACCTAGTTT
1 TTTCT-CAATTTGATACCTAGTTT
91400149 GGTTTCAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 5 0.24
24 5 0.24
25 11 0.52
ACGTcount: A:0.21, C:0.15, G:0.11, T:0.53
Consensus pattern (23 bp):
TTTCTCAATTTGATACCTAGTTT
Found at i:91400212 original size:34 final size:34
Alignment explanation
Indices: 91400169--91400238 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
91400159 ATCACTTTAG
91400169 TACCCTAGTTTTTTAATTTAATACTTGATTTTTT
1 TACCCTAGTTTTTTAATTTAATACTTGATTTTTT
91400203 TACCCTAGTTTTTTAATTTAATACTTGATTTTTT
1 TACCCTAGTTTTTTAATTTAATACTTGATTTTTT
91400237 TA
1 TA
91400239 ATCTAGTTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.24, C:0.11, G:0.06, T:0.59
Consensus pattern (34 bp):
TACCCTAGTTTTTTAATTTAATACTTGATTTTTT
Found at i:91400245 original size:34 final size:34
Alignment explanation
Indices: 91400172--91400246 Score: 132
Period size: 34 Copynumber: 2.2 Consensus size: 34
91400162 ACTTTAGTAC
*
91400172 CCTAGTTTTTTAATTTAATACTTGATTTTTTTAC
1 CCTAGTTTTTTAATTTAATACTTGATTTTTTTAA
91400206 CCTAGTTTTTTAATTTAATACTTGATTTTTTTAA
1 CCTAGTTTTTTAATTTAATACTTGATTTTTTTAA
*
91400240 TCTAGTT
1 CCTAGTT
91400247 AATTATTTGG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.24, C:0.11, G:0.07, T:0.59
Consensus pattern (34 bp):
CCTAGTTTTTTAATTTAATACTTGATTTTTTTAA
Found at i:91400968 original size:8 final size:9
Alignment explanation
Indices: 91400950--91400979 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
91400940 AAATAATTCT
91400950 AATAGAAAAA
1 AATA-AAAAA
91400960 AATAAAAAA
1 AATAAAAAA
91400969 AATAAAAAA
1 AATAAAAAA
91400978 AA
1 AA
91400980 AATTATTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 16 0.80
10 4 0.20
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.10
Consensus pattern (9 bp):
AATAAAAAA
Found at i:91401098 original size:28 final size:27
Alignment explanation
Indices: 91401050--91401128 Score: 95
Period size: 28 Copynumber: 2.9 Consensus size: 27
91401040 TGTTTTAGAG
* * *
91401050 ATTAAATGAAGGAAAAGGCATTAATAA
1 ATTAAATGTAGGAAAAAGCATTAAGAA
*
91401077 ATTAAATGTAGGGAAAAAGCATTAAGAT
1 ATTAAATGTA-GGAAAAAGCATTAAGAA
*
91401105 ATTAAATGTATGAAAAAGCCATTA
1 ATTAAATGTAGGAAAAAG-CATTA
91401129 GGCATTAAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 16 0.36
28 29 0.64
ACGTcount: A:0.52, C:0.05, G:0.18, T:0.25
Consensus pattern (27 bp):
ATTAAATGTAGGAAAAAGCATTAAGAA
Found at i:91401147 original size:28 final size:28
Alignment explanation
Indices: 91401050--91401147 Score: 94
Period size: 28 Copynumber: 3.6 Consensus size: 28
91401040 TGTTTTAGAG
* * * *
91401050 ATTAAATG-AAGGAAAAGGCATTAATAA
1 ATTAAATGTAGGGAAAAAGCATTAAGAC
*
91401077 ATTAAATGTAGGGAAAAAGCATTAAGAT
1 ATTAAATGTAGGGAAAAAGCATTAAGAC
* *
91401105 ATTAAATGTA-TGAAAAAGCCATT-AGGC
1 ATTAAATGTAGGGAAAAAG-CATTAAGAC
*
91401132 ATTAAATGCAGGGAAA
1 ATTAAATGTAGGGAAA
91401148 TGACTTATTG
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 26 0.44
28 33 0.56
ACGTcount: A:0.50, C:0.06, G:0.20, T:0.23
Consensus pattern (28 bp):
ATTAAATGTAGGGAAAAAGCATTAAGAC
Found at i:91406482 original size:24 final size:24
Alignment explanation
Indices: 91406451--91406499 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
91406441 AGAACATTAT
*
91406451 TGAGTTAGTATTAAAGTTTTGTTA
1 TGAGTTAGTATTAAAGTTTCGTTA
91406475 TGAGTTAGTATTAAAGTTTCGTTA
1 TGAGTTAGTATTAAAGTTTCGTTA
91406499 T
1 T
91406500 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.02, G:0.20, T:0.49
Consensus pattern (24 bp):
TGAGTTAGTATTAAAGTTTCGTTA
Found at i:91407704 original size:21 final size:21
Alignment explanation
Indices: 91407680--91407743 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
91407670 CAAATTAACC
91407680 CTTTTGGGTTTCAGTTCAGCT
1 CTTTTGGGTTTCAGTTCAGCT
* * * *
91407701 CTTTTGAGCTTCAGTTTAGCC
1 CTTTTGGGTTTCAGTTCAGCT
* *
91407722 CTTATGGGTTTCCGTTCAGCT
1 CTTTTGGGTTTCAGTTCAGCT
91407743 C
1 C
91407744 CTATGAGATT
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.11, C:0.23, G:0.22, T:0.44
Consensus pattern (21 bp):
CTTTTGGGTTTCAGTTCAGCT
Found at i:91410854 original size:47 final size:47
Alignment explanation
Indices: 91410785--91410890 Score: 176
Period size: 47 Copynumber: 2.3 Consensus size: 47
91410775 TCATTTTGGG
91410785 AATAGATTGGTTGACAAAGCATGACGCTATAGTAAATTATAGAGAAA
1 AATAGATTGGTTGACAAAGCATGACGCTATAGTAAATTATAGAGAAA
* * *
91410832 AATAGATTGGTTGACGAAGCATGATGCTATAGTAAATTGTAGAGAAA
1 AATAGATTGGTTGACAAAGCATGACGCTATAGTAAATTATAGAGAAA
*
91410879 AAAAGATTGGTT
1 AATAGATTGGTT
91410891 TGAAATGTCA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.42, C:0.07, G:0.24, T:0.27
Consensus pattern (47 bp):
AATAGATTGGTTGACAAAGCATGACGCTATAGTAAATTATAGAGAAA
Found at i:91415434 original size:42 final size:42
Alignment explanation
Indices: 91415375--91415491 Score: 137
Period size: 42 Copynumber: 2.8 Consensus size: 42
91415365 GAGTTTTAGA
* * *
91415375 TTAACCCTT-TGGGGTTTCGGTTTAGCTCTTTTGAGCTTCAGT
1 TTAACCCTTAT-GGGTTTCCGTTTAGCTCCTATGAGCTTCAGT
* * * *
91415417 TTAACCCTTATGGGTTTCTGTTCATCTCCTATGAGCTTCTGT
1 TTAACCCTTATGGGTTTCCGTTTAGCTCCTATGAGCTTCAGT
* *
91415459 TTAACCCTTACGGGTTTCCGTTTAGCACCTATG
1 TTAACCCTTATGGGTTTCCGTTTAGCTCCTATG
91415492 TGCATCTGTG
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 62 0.98
43 1 0.02
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.43
Consensus pattern (42 bp):
TTAACCCTTATGGGTTTCCGTTTAGCTCCTATGAGCTTCAGT
Found at i:91419833 original size:41 final size:41
Alignment explanation
Indices: 91419788--91419880 Score: 150
Period size: 41 Copynumber: 2.3 Consensus size: 41
91419778 ATTATTGTAT
*
91419788 AATTGCACATACGTGCCCCTATTTGTACTTTGATACCCCTG
1 AATTGCACATACGTGCCCCTATTTGTACTTTGATACCCCTA
* *
91419829 AATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTA
1 AATTGCACATACGTGCCCCTATTTGTACTTTGATACCCCTA
*
91419870 AATTACACATA
1 AATTGCACATA
91419881 TGTGACTCGG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (41 bp):
AATTGCACATACGTGCCCCTATTTGTACTTTGATACCCCTA
Found at i:91419849 original size:21 final size:21
Alignment explanation
Indices: 91419788--91419849 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
91419778 ATTATTGTAT
91419788 AATTGCACATACGTGCCCCT-
1 AATTGCACATACGTGCCCCTG
* * ** *
91419808 ATTTGTAC-TTTGATACCCCTG
1 AATTGCACATACG-TGCCCCTG
91419829 AATTGCACATACGTGCCCCTG
1 AATTGCACATACGTGCCCCTG
91419850 TTTGTACTTT
Statistics
Matches: 29, Mismatches: 10, Indels: 5
0.66 0.23 0.11
Matches are distributed among these distances:
19 2 0.07
20 12 0.41
21 13 0.45
22 2 0.07
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.31
Consensus pattern (21 bp):
AATTGCACATACGTGCCCCTG
Found at i:91419894 original size:41 final size:41
Alignment explanation
Indices: 91419788--91419903 Score: 124
Period size: 41 Copynumber: 2.8 Consensus size: 41
91419778 ATTATTGTAT
* * ** * *
91419788 AATTGCACATACGTGCCCCTATTTGTACTTTGATACCCCTG
1 AATTACACATACGTGACCCGGTTTGTACTTTGGTACCCCTA
* * *
91419829 AATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTA
1 AATTACACATACGTGACCCGGTTTGTACTTTGGTACCCCTA
* * *
91419870 AATTACACATATGTGACTCGGTTTGTATTTTGGT
1 AATTACACATACGTGACCCGGTTTGTACTTTGGT
91419904 GCTCCTGAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 66 1.00
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (41 bp):
AATTACACATACGTGACCCGGTTTGTACTTTGGTACCCCTA
Found at i:91427832 original size:55 final size:55
Alignment explanation
Indices: 91427748--91427859 Score: 197
Period size: 55 Copynumber: 2.0 Consensus size: 55
91427738 ATGATATGGG
* * *
91427748 TTAATTTGTAAAATTGTTAAATGTTGAGGGTTATGCTATGAATGTTCTTGAATGA
1 TTAATTTGTAAAAATATTAAAGGTTGAGGGTTATGCTATGAATGTTCTTGAATGA
91427803 TTAATTTGTAAAAATATTAAAGGTTGAGGGTTATGCTATGAATGTTCTTGAATGA
1 TTAATTTGTAAAAATATTAAAGGTTGAGGGTTATGCTATGAATGTTCTTGAATGA
91427858 TT
1 TT
91427860 TTTTATGTTA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.32, C:0.04, G:0.21, T:0.43
Consensus pattern (55 bp):
TTAATTTGTAAAAATATTAAAGGTTGAGGGTTATGCTATGAATGTTCTTGAATGA
Found at i:91432489 original size:13 final size:13
Alignment explanation
Indices: 91432471--91432500 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
91432461 TTTATTATAT
*
91432471 ATATTCAACACTA
1 ATATTCAAAACTA
91432484 ATATTCAAAACTA
1 ATATTCAAAACTA
91432497 ATAT
1 ATAT
91432501 ATATTTAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (13 bp):
ATATTCAAAACTA
Found at i:91432547 original size:28 final size:28
Alignment explanation
Indices: 91432467--91432547 Score: 83
Period size: 28 Copynumber: 2.8 Consensus size: 28
91432457 ACATTTTATT
* *
91432467 ATATATATTCAACACTAATATTCAAAACTA
1 ATATATATTTAATAC-AA-ATTCAAAACTA
** *
91432497 ATATATATTTAATGTATATTCAAAACTA
1 ATATATATTTAATACAAATTCAAAACTA
91432525 ATATATATTTAA-ACAAATGTCAA
1 ATATATATTTAATACAAAT-TCAA
91432548 TACATATACA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
27 3 0.07
28 27 0.64
29 1 0.02
30 11 0.26
ACGTcount: A:0.49, C:0.11, G:0.02, T:0.37
Consensus pattern (28 bp):
ATATATATTTAATACAAATTCAAAACTA
Found at i:91440900 original size:22 final size:22
Alignment explanation
Indices: 91440875--91440917 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
91440865 AAGCCCAAGC
91440875 CAATACCAAACAAACCCAAACT
1 CAATACCAAACAAACCCAAACT
* *
91440897 CAATGCCAATCAAACCCAAAC
1 CAATACCAAACAAACCCAAAC
91440918 CTAAGCCAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.51, C:0.37, G:0.02, T:0.09
Consensus pattern (22 bp):
CAATACCAAACAAACCCAAACT
Found at i:91441188 original size:17 final size:17
Alignment explanation
Indices: 91441159--91441196 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
91441149 ATATTATTAA
*
91441159 ATTA-ATATATTATGTT
1 ATTATATATATTATATT
*
91441175 ATTATATATTTTATATT
1 ATTATATATATTATATT
91441192 ATTAT
1 ATTAT
91441197 CAAATTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
ATTATATATATTATATT
Found at i:91441196 original size:8 final size:8
Alignment explanation
Indices: 91441143--91441196 Score: 51
Period size: 8 Copynumber: 7.0 Consensus size: 8
91441133 TATAACACCA
*
91441143 ATTATCAT
1 ATTATTAT
*
91441151 ATTATTAA
1 ATTATTAT
*
91441159 ATTAATAT
1 ATTATTAT
91441167 ATTATGT-T
1 ATTAT-TAT
91441175 ATTA-TAT
1 ATTATTAT
91441182 ATT-TTAT
1 ATTATTAT
91441189 ATTATTAT
1 ATTATTAT
91441197 CAAATTTAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
6 1 0.03
7 10 0.27
8 25 0.68
9 1 0.03
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (8 bp):
ATTATTAT
Found at i:91448772 original size:20 final size:20
Alignment explanation
Indices: 91448747--91448798 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
91448737 TCATGTCTCG
91448747 AACTCACACTGAGCTCGTGT
1 AACTCACACTGAGCTCGTGT
*
91448767 AACTCATACTGAGCTCGTGT
1 AACTCACACTGAGCTCGTGT
*
91448787 AGCTCACACTGA
1 AACTCACACTGA
91448799 TATTGTTTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (20 bp):
AACTCACACTGAGCTCGTGT
Found at i:91464273 original size:14 final size:14
Alignment explanation
Indices: 91464235--91464303 Score: 64
Period size: 14 Copynumber: 5.5 Consensus size: 14
91464225 TTCGTAGATC
*
91464235 AAATAAATTATGCT
1 AAATATATTATGCT
91464249 -AATA-A--ATGCT
1 AAATATATTATGCT
91464259 AAATATATTATGCT
1 AAATATATTATGCT
*
91464273 AAATATATTATACT
1 AAATATATTATGCT
91464287 -AATA-A--ATGCT
1 AAATATATTATGCT
91464297 AAATATA
1 AAATATA
91464304 CTAATAAATA
Statistics
Matches: 47, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
10 9 0.19
11 8 0.17
12 4 0.09
13 8 0.17
14 18 0.38
ACGTcount: A:0.51, C:0.07, G:0.06, T:0.36
Consensus pattern (14 bp):
AAATATATTATGCT
Found at i:91464303 original size:19 final size:19
Alignment explanation
Indices: 91464281--91464319 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
91464271 CTAAATATAT
*
91464281 TATACTAATAAATGCTAAA
1 TATACTAATAAATACTAAA
91464300 TATACTAATAAATACTAAA
1 TATACTAATAAATACTAAA
91464319 T
1 T
91464320 CTTCTAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.54, C:0.10, G:0.03, T:0.33
Consensus pattern (19 bp):
TATACTAATAAATACTAAA
Found at i:91467003 original size:24 final size:24
Alignment explanation
Indices: 91466976--91467027 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
91466966 TTAGTAAGTC
*
91466976 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
91467000 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
91467024 AAAT
1 AAAT
91467028 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:91468971 original size:24 final size:24
Alignment explanation
Indices: 91468944--91468995 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
91468934 TTAGTAAGTC
*
91468944 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
91468968 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
91468992 AAAT
1 AAAT
91468996 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:91469214 original size:42 final size:40
Alignment explanation
Indices: 91469168--91469247 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 40
91469158 TATATCCATT
* *
91469168 TTTTATAATTAATAGAAAATAATATTTTAAAATTATAATATA
1 TTTTAAAATTAATAGAAAAT-A-ATCTTAAAATTATAATATA
* *
91469210 TTTTAAAATTAATTGAAGATAATCTTAAAATTATAATA
1 TTTTAAAATTAATAGAAAATAATCTTAAAATTATAATA
91469248 ATTAGATGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 16 0.47
41 1 0.03
42 17 0.50
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (40 bp):
TTTTAAAATTAATAGAAAATAATCTTAAAATTATAATATA
Found at i:91469768 original size:17 final size:17
Alignment explanation
Indices: 91469746--91469778 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
91469736 TTTTACCATT
91469746 TAAAT-ATTACAAATTAA
1 TAAATAATTA-AAATTAA
91469763 TAAATAATTAAAATTA
1 TAAATAATTAAAATTA
91469779 TATTTTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (17 bp):
TAAATAATTAAAATTAA
Found at i:91475526 original size:28 final size:30
Alignment explanation
Indices: 91475494--91475557 Score: 78
Period size: 31 Copynumber: 2.2 Consensus size: 30
91475484 ATTTATATAC
* *
91475494 ATTATTT-GTAATAATTATA-TATTTTCTT
1 ATTATTTAGTAATAATTATATTATTATATT
*
91475522 ATTATTTAAGTAATTATTATATTATTATATT
1 ATTATTT-AGTAATAATTATATTATTATATT
91475553 ATTAT
1 ATTAT
91475558 AATTAAAACA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 7 0.23
30 11 0.37
31 12 0.40
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (30 bp):
ATTATTTAGTAATAATTATATTATTATATT
Found at i:91475547 original size:8 final size:8
Alignment explanation
Indices: 91475534--91475558 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
91475524 TATTTAAGTA
91475534 ATTATTAT
1 ATTATTAT
91475542 ATTATTAT
1 ATTATTAT
91475550 ATTATTAT
1 ATTATTAT
91475558 A
1 A
91475559 ATTAAAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
ATTATTAT
Found at i:91475590 original size:13 final size:13
Alignment explanation
Indices: 91475569--91475617 Score: 71
Period size: 13 Copynumber: 3.5 Consensus size: 13
91475559 ATTAAAACAT
91475569 AAAGTAAATAAATA
1 AAAG-AAATAAATA
91475583 AAAGAAATAAATA
1 AAAGAAATAAATA
91475596 AAAGAAATGAAATA
1 AAAGAAAT-AAATA
91475610 GAAAGAAA
1 -AAAGAAA
91475618 CAAAAAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
13 17 0.52
14 9 0.27
15 7 0.21
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.14
Consensus pattern (13 bp):
AAAGAAATAAATA
Found at i:91477931 original size:19 final size:20
Alignment explanation
Indices: 91477894--91477931 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
91477884 AGCGGGACAA
*
91477894 TATGATTAAATTATGATGTG
1 TATGATTAAATGATGATGTG
*
91477914 TATG-TTAAATGATTATGT
1 TATGATTAAATGATGATGT
91477932 AAATGTTCGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.47
Consensus pattern (20 bp):
TATGATTAAATGATGATGTG
Found at i:91484673 original size:17 final size:17
Alignment explanation
Indices: 91484662--91484696 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
91484652 ACCCAATACC
91484662 AACCCAATCCCAAAACA
1 AACCCAATCCCAAAACA
91484679 AACCCAATTACCCAAAAC
1 AACCCAA-T-CCCAAAAC
91484697 CCAAACAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 1 0.06
19 8 0.50
ACGTcount: A:0.51, C:0.40, G:0.00, T:0.09
Consensus pattern (17 bp):
AACCCAATCCCAAAACA
Found at i:91488977 original size:17 final size:17
Alignment explanation
Indices: 91488951--91488985 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
91488941 ACAAAATTCA
91488951 AATTTAATTTATAATTT
1 AATTTAATTTATAATTT
* *
91488968 AATTTTATTTATGATTT
1 AATTTAATTTATAATTT
91488985 A
1 A
91488986 TATAATTGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (17 bp):
AATTTAATTTATAATTT
Found at i:91496611 original size:36 final size:30
Alignment explanation
Indices: 91496571--91496669 Score: 81
Period size: 33 Copynumber: 3.0 Consensus size: 30
91496561 ATAATTTATT
91496571 ATAAAATATTATTTCCAAATTTTTGAAAATATAAAA
1 ATAAAATATT-TTT--AAATTTTT---AATATAAAA
*
91496607 ATAAAATATTTTTAACTTTTTAATATAAAA
1 ATAAAATATTTTTAAATTTTTAATATAAAA
* * *
91496637 ATAAAAAATCTTATAATATAATTTAATATAAAA
1 ATAAAATAT-TTTTAA-AT-TTTTAATATAAAA
91496670 TATTATTTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
30 17 0.31
31 5 0.09
32 1 0.02
33 19 0.35
35 3 0.05
36 10 0.18
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (30 bp):
ATAAAATATTTTTAAATTTTTAATATAAAA
Found at i:91508519 original size:23 final size:22
Alignment explanation
Indices: 91508488--91508540 Score: 81
Period size: 23 Copynumber: 2.4 Consensus size: 22
91508478 TCTAAATCCG
91508488 AAAAGTAAATATACTAAATTCCTT
1 AAAA-TAAATATACTAAATT-CTT
91508512 AAAATAAATATACTAAATTCTT
1 AAAATAAATATACTAAATTCTT
91508534 -AAATAAA
1 AAAATAAA
91508541 AAAACTAAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
21 7 0.24
22 3 0.10
23 15 0.52
24 4 0.14
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.32
Consensus pattern (22 bp):
AAAATAAATATACTAAATTCTT
Found at i:91508547 original size:21 final size:21
Alignment explanation
Indices: 91508500--91508565 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 21
91508490 AAGTAAATAT
* *
91508500 ACTAAATTCCTTAAAATAAATAT
1 ACTAAATT-CTT-AAATAAAAAA
91508523 ACTAAATTCTTAAATAAAAAA
1 ACTAAATTCTTAAATAAAAAA
* *
91508544 ACTAAGTT-TTAAGTATAAAAA
1 ACTAAATTCTTAAATA-AAAAA
91508565 A
1 A
91508566 TACACGAGCT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
20 6 0.16
21 21 0.55
22 3 0.08
23 8 0.21
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.32
Consensus pattern (21 bp):
ACTAAATTCTTAAATAAAAAA
Found at i:91509153 original size:101 final size:107
Alignment explanation
Indices: 91508953--91509169 Score: 374
Period size: 101 Copynumber: 2.1 Consensus size: 107
91508943 TATTTGTTCA
91508953 AATTAAGTTTTCACGAATGACAACTTCCCTAATCCGTTTCAACGACAAGCACATTTCCGCTGCTC
1 AATTAAGTTTTCACGAATGACAACTTCCCTAATCCGTTTCAACGACAAGCACATTTCCGCTGCTC
91509018 AAGCAGTAATGGTAAGAAGAAAATTTAATTTTCGTTATTTTC
66 AAGCAGTAATGGTAAGAAGAAAATTTAATTTTCGTTATTTTC
*
91509060 AATTAAGTTTTCACGAATGACAACTT-CCTAAT-CGTTTCAATGACAA-CACATTT-CGC-GCTC
1 AATTAAGTTTTCACGAATGACAACTTCCCTAATCCGTTTCAACGACAAGCACATTTCCGCTGCTC
*
91509120 AAGCA-TAATGGTAAGAAGAAATTTTAATTTTCGTTATTTTC
66 AAGCAGTAATGGTAAGAAGAAAATTTAATTTTCGTTATTTTC
91509161 AATTAAGTT
1 AATTAAGTT
91509170 AAATTTAAAT
Statistics
Matches: 108, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
101 44 0.41
102 9 0.08
103 3 0.03
104 7 0.06
105 13 0.12
106 6 0.06
107 26 0.24
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (107 bp):
AATTAAGTTTTCACGAATGACAACTTCCCTAATCCGTTTCAACGACAAGCACATTTCCGCTGCTC
AAGCAGTAATGGTAAGAAGAAAATTTAATTTTCGTTATTTTC
Found at i:91510099 original size:169 final size:175
Alignment explanation
Indices: 91509781--91510126 Score: 634
Period size: 169 Copynumber: 2.0 Consensus size: 175
91509771 TGTTATACTA
91509781 AGAGTTGTGTTAGGCTACGGAACCAGATAAGATGTCAATCGGTGATTATCTGCTTCTACTGCAGT
1 AGAGTTGTGTTAGGCTACGGAACCAGATAAGATGTCAATCGGTGATTATCTGCTTCTACTGCAGT
91509846 TGTGAGTCTGGTGGCAGCTACCATTTTTACATCCCCGAGTGAACACGACTCATACATGTTTCTTT
66 TGTGAGTCTGGTGGCAGCTACCATTTTTACATCCCCGAGTGAACACGACTCATACATGTTTCTTT
91509911 TGATGATAAGGTAAAAACCATTTATTAATAAATACGTAGTTTATAC
131 TGATGATAAGGTAAAAACCATTTATTAATAAATACGTAGTTT-TAC
91509957 AGAGTTGTGTTAGGCTACGGAACCAGATAAGATGTCAATC-GTGATTATCTGCTTCTACTGCAGT
1 AGAGTTGTGTTAGGCTACGGAACCAGATAAGATGTCAATCGGTGATTATCTGCTTCTACTGCAGT
91510021 TGTGAGTCT-GTGGCA-CTACCA-TTTTA-ATCCCCGAGTG-A-ACGACTCATACATGTTTCTTT
66 TGTGAGTCTGGTGGCAGCTACCATTTTTACATCCCCGAGTGAACACGACTCATACATGTTTCTTT
91510080 TGATGATAAGGTAAAAACCATTTATTAATAAATACGTAGTTTTAC
131 TGATGATAAGGTAAAAACCATTTATTAATAAATACGTAGTTTTAC
91510125 AG
1 AG
91510127 TAAATGTTTT
Statistics
Matches: 170, Mismatches: 0, Indels: 8
0.96 0.00 0.04
Matches are distributed among these distances:
168 5 0.03
169 63 0.37
170 1 0.01
171 11 0.06
172 5 0.03
173 6 0.04
174 6 0.04
175 33 0.19
176 40 0.24
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33
Consensus pattern (175 bp):
AGAGTTGTGTTAGGCTACGGAACCAGATAAGATGTCAATCGGTGATTATCTGCTTCTACTGCAGT
TGTGAGTCTGGTGGCAGCTACCATTTTTACATCCCCGAGTGAACACGACTCATACATGTTTCTTT
TGATGATAAGGTAAAAACCATTTATTAATAAATACGTAGTTTTAC
Found at i:91515800 original size:6 final size:6
Alignment explanation
Indices: 91515791--91515827 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
91515781 TTATTTAATT
91515791 TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA T
1 TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA T
91515828 ATATAGTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (6 bp):
TTAAAA
Found at i:91516196 original size:16 final size:16
Alignment explanation
Indices: 91516172--91516205 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
91516162 TTAATTTTCG
91516172 AAATAATAAAGATATA
1 AAATAATAAAGATATA
*
91516188 AAATTATAAAGATATA
1 AAATAATAAAGATATA
91516204 AA
1 AA
91516206 TACATTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (16 bp):
AAATAATAAAGATATA
Found at i:91516550 original size:17 final size:18
Alignment explanation
Indices: 91516524--91516557 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
91516514 AGGTTTAATA
91516524 ATATT-AAAAAAATAAAT
1 ATATTAAAAAAAATAAAT
*
91516541 ATATTTAAAAAAATAAA
1 ATATTAAAAAAAATAAA
91516558 AATTTGTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
ATATTAAAAAAAATAAAT
Found at i:91519700 original size:34 final size:35
Alignment explanation
Indices: 91519637--91519704 Score: 104
Period size: 34 Copynumber: 2.0 Consensus size: 35
91519627 ATACCTTTTT
91519637 AAGCTTGGTAAGTTGCCTTCCTCTTTCTTAGGTTC
1 AAGCTTGGTAAGTTGCCTTCCTCTTTCTTAGGTTC
*
91519672 AAGCTTGGT-AGTTGCCTTGCT-TTCTCTTAGGTT
1 AAGCTTGGTAAGTTGCCTTCCTCTT-TCTTAGGTT
91519705 TTCCATAGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
33 2 0.06
34 20 0.65
35 9 0.29
ACGTcount: A:0.13, C:0.21, G:0.22, T:0.44
Consensus pattern (35 bp):
AAGCTTGGTAAGTTGCCTTCCTCTTTCTTAGGTTC
Found at i:91527932 original size:13 final size:13
Alignment explanation
Indices: 91527914--91527940 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
91527904 GGGGACACAT
91527914 GGCCGGACAACAC
1 GGCCGGACAACAC
91527927 GGCCGGACAACAC
1 GGCCGGACAACAC
91527940 G
1 G
91527941 CCCATGGGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.37, G:0.33, T:0.00
Consensus pattern (13 bp):
GGCCGGACAACAC
Found at i:91528788 original size:47 final size:49
Alignment explanation
Indices: 91528719--91528982 Score: 167
Period size: 46 Copynumber: 5.6 Consensus size: 49
91528709 ATAATGCTAG
* *
91528719 TGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CATC-AAGTCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCGAAGCCGA
* *
91528766 TGCCATGTCCCAGACATGGTCTTACACTGACT-ATCAAAATCGAGGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-AAATCGAAGCCGA
** * ** *
91528815 CACCATGTCCCAGACATGGTCTTACACTAGCTC-TCCCGTATCCG-TGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCAT--CAAAT-CGAAGCCGA
* * * * * * * *
91528865 TGCTATATCCTAGACATTGTCTTACTCTGACACATC---TCGTAGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCGAAGCCGA
* * * ** * **
91528911 TG-CATGCCCCAGACA-CGTCTTACACTGGCTTA-CATCTCGAGGAGGA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCGAAGCCGA
91528957 TG-CATGTCCCAGACAT-GTCTTACACT
1 TGCCATGTCCCAGACATGGTCTTACACT
91528983 AGTACACAAA
Statistics
Matches: 168, Mismatches: 36, Indels: 27
0.73 0.16 0.12
Matches are distributed among these distances:
43 1 0.01
44 12 0.07
45 11 0.07
46 41 0.24
47 31 0.18
48 3 0.02
49 35 0.21
50 30 0.18
51 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (49 bp):
TGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCGAAGCCGA
Found at i:91528840 original size:49 final size:47
Alignment explanation
Indices: 91528721--91528842 Score: 156
Period size: 49 Copynumber: 2.6 Consensus size: 47
91528711 AATGCTAGTG
* * * **
91528721 CCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGCCGACA
*
91528768 CCATGTCCCAGACATGGTCTTACACTGACT-ATCAAAATCGAGGCCGACA
1 CCATGTCCCAGACATGGTCTTACACTGACTCATC--AATC-AAGCCGACA
91528817 CCATGTCCCAGACATGGTCTTACACT
1 CCATGTCCCAGACATGGTCTTACACT
91528843 AGCTCTCCCG
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
46 3 0.05
47 29 0.44
48 3 0.05
49 31 0.47
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (47 bp):
CCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGCCGACA
Found at i:91533079 original size:8 final size:8
Alignment explanation
Indices: 91533066--91533090 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
91533056 TACAATTTAC
91533066 AAAAATAA
1 AAAAATAA
91533074 AAAAATAA
1 AAAAATAA
91533082 AAAAATAA
1 AAAAATAA
91533090 A
1 A
91533091 TGAATAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAATAA
Found at i:91541612 original size:40 final size:40
Alignment explanation
Indices: 91541550--91541732 Score: 226
Period size: 40 Copynumber: 4.6 Consensus size: 40
91541540 CTCAATCAAT
* * *
91541550 CATAC-TTTCACTAGAATT-AGTAGGTAAGGCTCGATAGCG
1 CATACATTTCAGTAG-ATTCAGTAGGTATGGCTCGAAAGCG
* * *
91541589 CATACATTTCAGTGGAATCAGTAGGTATGGCTCGAAAGTG
1 CATACATTTCAGTAGATTCAGTAGGTATGGCTCGAAAGCG
* * *
91541629 CATACATTTTAGTAGATTCTGTAGGTATGGCTCAAAAGCG
1 CATACATTTCAGTAGATTCAGTAGGTATGGCTCGAAAGCG
** *
91541669 CATACATTTCAGTAGATTTTGTAGGTATGGCTCGAAAGCA
1 CATACATTTCAGTAGATTCAGTAGGTATGGCTCGAAAGCG
*
91541709 CATACATTTTAGTAGATTCAGTAG
1 CATACATTTCAGTAGATTCAGTAG
91541733 TAACAGCCCG
Statistics
Matches: 123, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
39 7 0.06
40 116 0.94
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (40 bp):
CATACATTTCAGTAGATTCAGTAGGTATGGCTCGAAAGCG
Found at i:91546118 original size:13 final size:13
Alignment explanation
Indices: 91546102--91546127 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
91546092 ACAACTCTAT
91546102 AAATATTGAATAA
1 AAATATTGAATAA
91546115 AAATATTGAATAA
1 AAATATTGAATAA
91546128 CCACTTGGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (13 bp):
AAATATTGAATAA
Found at i:91549234 original size:59 final size:59
Alignment explanation
Indices: 91549142--91549260 Score: 193
Period size: 59 Copynumber: 2.0 Consensus size: 59
91549132 AATGAAAATG
** *
91549142 AGTTAGATTTGACCAATCAATATCACACTATCACAAGTTTATATGGCATGTACTTTCTA
1 AGTTAGATCAGACCAATCAATATCACACTATCACAAGTTTATATGGCATATACTTTCTA
* *
91549201 AGTTAGATCAGACCAATCAATATCACACTATCACAGGTTTATATGTCATATACTTTCTA
1 AGTTAGATCAGACCAATCAATATCACACTATCACAAGTTTATATGGCATATACTTTCTA
91549260 A
1 A
91549261 TCTTTCAATA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.34
Consensus pattern (59 bp):
AGTTAGATCAGACCAATCAATATCACACTATCACAAGTTTATATGGCATATACTTTCTA
Found at i:91550724 original size:40 final size:40
Alignment explanation
Indices: 91550618--91550890 Score: 241
Period size: 40 Copynumber: 6.8 Consensus size: 40
91550608 CTCGATAAAG
* *
91550618 CATAC-TTTCAGTAGAATT-AGTAGGTAAGGCTCGATAGC-
1 CATACGTTTCAGTA-AATTCAGTAGGTATGGCTCGAAAGCA
** * * * * *
91550656 CATAAATTTCAATAGAA-TCAATATGTATGGCTCAAAAGCG
1 CATACGTTTCAGTA-AATTCAGTAGGTATGGCTCGAAAGCA
* *
91550696 CATACGTTTCAGTAAATTTAGTAGGTATGGCTTTGAAAGCA
1 CATACGTTTCAGTAAATTCAGTAGGTATGGC-TCGAAAGCA
* *
91550737 CATACGTTTCAGTAGATTCAGTAGGTGTGGCTCGAAAGCA
1 CATACGTTTCAGTAAATTCAGTAGGTATGGCTCGAAAGCA
* *
91550777 CATACGTTTCAGTAAATTCAGTAGGTATGGATTGAAAGCA
1 CATACGTTTCAGTAAATTCAGTAGGTATGGCTCGAAAGCA
* * * * *
91550817 CATATGTTTCAATAGATACTA-TAGGTATGGCTCAAAAGCA
1 CATACGTTTCAGTAAATTC-AGTAGGTATGGCTCGAAAGCA
* * * * * *
91550857 CATAAGTTTCAATAGATTCAATAGATATCGCTCG
1 CATACGTTTCAGTAAATTCAGTAGGTATGGCTCG
91550891 TCTGAGCACC
Statistics
Matches: 192, Mismatches: 36, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
38 5 0.03
39 28 0.15
40 124 0.65
41 35 0.18
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (40 bp):
CATACGTTTCAGTAAATTCAGTAGGTATGGCTCGAAAGCA
Found at i:91550781 original size:81 final size:79
Alignment explanation
Indices: 91550618--91550867 Score: 290
Period size: 81 Copynumber: 3.1 Consensus size: 79
91550608 CTCGATAAAG
* * * * * *
91550618 CATAC-TTTCAGTAGAA-TTAGTAGGTAAGGCTCGATAGC-CATAAATTTCAATAGAATCAATAT
1 CATACGTTTCAGTA-AATTTAGTAGGTATGGCTTGAAAGCACATAAGTTTCAATAGATTC-ATAG
*
91550680 GTATGGCTCAAAAGCG
64 GTATGGCTCAAAAGCA
* *
91550696 CATACGTTTCAGTAAATTTAGTAGGTATGGCTTTGAAAGCACATACGTTTCAGTAGATTCAGTAG
1 CATACGTTTCAGTAAATTTAGTAGGTATGGC-TTGAAAGCACATAAGTTTCAATAGATTCA-TAG
* *
91550761 GTGTGGCTCGAAAGCA
64 GTATGGCTCAAAAGCA
* * * *
91550777 CATACGTTTCAGTAAATTCAGTAGGTATGGATTGAAAGCACATATGTTTCAATAGATACTATAGG
1 CATACGTTTCAGTAAATTTAGTAGGTATGGCTTGAAAGCACATAAGTTTCAATAGATTC-ATAGG
91550842 TATGGCTCAAAAGCA
65 TATGGCTCAAAAGCA
*
91550857 CATAAGTTTCA
1 CATACGTTTCA
91550868 ATAGATTCAA
Statistics
Matches: 147, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
78 7 0.05
79 21 0.14
80 59 0.40
81 60 0.41
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (79 bp):
CATACGTTTCAGTAAATTTAGTAGGTATGGCTTGAAAGCACATAAGTTTCAATAGATTCATAGGT
ATGGCTCAAAAGCA
Found at i:91550855 original size:80 final size:79
Alignment explanation
Indices: 91550618--91550876 Score: 274
Period size: 80 Copynumber: 3.3 Consensus size: 79
91550608 CTCGATAAAG
* * * * *
91550618 CATAC-TTTCAGTAGAATT-AGTAGGTAAGGCTCGATAGC-CATAAATTTCAATAGA-ATCAATA
1 CATACGTTTCAGTA-AATTCAGTAGGTATGGATTGAAAGCACATAAGTTTCAATAGATA-C-ATA
* *
91550679 TGTATGGCTCAAAAGCG
63 GGTATGGCTCAAAAGCA
* * * * *
91550696 CATACGTTTCAGTAAATTTAGTAGGTATGGCTTTGAAAGCACATACGTTTCAGTAGATTCAGTAG
1 CATACGTTTCAGTAAATTCAGTAGGTATGG-ATTGAAAGCACATAAGTTTCAATAGATACA-TAG
* *
91550761 GTGTGGCTCGAAAGCA
64 GTATGGCTCAAAAGCA
*
91550777 CATACGTTTCAGTAAATTCAGTAGGTATGGATTGAAAGCACATATGTTTCAATAGATACTATAGG
1 CATACGTTTCAGTAAATTCAGTAGGTATGGATTGAAAGCACATAAGTTTCAATAGATAC-ATAGG
91550842 TATGGCTCAAAAGCA
65 TATGGCTCAAAAGCA
* * *
91550857 CATAAGTTTCAATAGATTCA
1 CATACGTTTCAGTAAATTCA
91550877 ATAGATATCG
Statistics
Matches: 152, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
78 9 0.06
79 18 0.12
80 66 0.43
81 59 0.39
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (79 bp):
CATACGTTTCAGTAAATTCAGTAGGTATGGATTGAAAGCACATAAGTTTCAATAGATACATAGGT
ATGGCTCAAAAGCA
Found at i:91552440 original size:5 final size:5
Alignment explanation
Indices: 91552430--91552466 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
91552420 TCTATTAGCA
91552430 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TT
91552467 TCTCATTAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:91557054 original size:6 final size:6
Alignment explanation
Indices: 91557045--91557079 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
91557035 ATTATTTAGT
* *
91557045 TTTATA TTTATT TTTATA TTTATT TTTATA TTTAT
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTAT
91557080 TTTTTGTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (6 bp):
TTTATA
Found at i:91557054 original size:12 final size:12
Alignment explanation
Indices: 91557037--91557083 Score: 85
Period size: 12 Copynumber: 3.9 Consensus size: 12
91557027 CCAGTGACAT
*
91557037 TATTTAGTTTTA
1 TATTTATTTTTA
91557049 TATTTATTTTTA
1 TATTTATTTTTA
91557061 TATTTATTTTTA
1 TATTTATTTTTA
91557073 TATTTATTTTT
1 TATTTATTTTT
91557084 TGTTATGTGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (12 bp):
TATTTATTTTTA
Found at i:91557108 original size:12 final size:11
Alignment explanation
Indices: 91557036--91557108 Score: 65
Period size: 12 Copynumber: 6.2 Consensus size: 11
91557026 ACCAGTGACA
91557036 TTATTTAGTTTT
1 TTATTTA-TTTT
*
91557048 ATATTTATTTT
1 TTATTTATTTT
91557059 TATATTTATTTT
1 T-TATTTATTTT
91557071 TATATTTATTTT
1 T-TATTTATTTT
* *
91557083 TTGTTATGTGTTT
1 TTATT-TAT-TTT
*
91557096 TTATTTAATTT
1 TTATTTATTTT
91557107 TT
1 TT
91557109 CGGACTTATA
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
11 12 0.24
12 32 0.63
13 7 0.14
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (11 bp):
TTATTTATTTT
Found at i:91560685 original size:27 final size:27
Alignment explanation
Indices: 91560637--91560795 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
91560627 GCGAGGCTGC
* *
91560637 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
* *
91560664 TAGATATTATGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
91560690 CAGATATATGTGGCAAAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
91560717 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
91560744 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
91560771 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
91560796 GACGCTTCCT
Statistics
Matches: 112, Mismatches: 12, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
26 9 0.08
27 98 0.88
28 5 0.04
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:91560731 original size:54 final size:54
Alignment explanation
Indices: 91560673--91560795 Score: 219
Period size: 54 Copynumber: 2.3 Consensus size: 54
91560663 ATAGATATTA
*
91560673 TGGCAGAGCCACCAGAACAGATATATGTGGCAAAGCCACCAGATCAGATAATCG
1 TGGCATAGCCACCAGAACAGATATATGTGGCAAAGCCACCAGATCAGATAATCG
* *
91560727 TGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTG
1 TGGCATAGCCACCAGAACAGATATATGTGGCAAAGCCACCAGATCAGATAATCG
91560781 TGGCATAGCCACCAG
1 TGGCATAGCCACCAG
91560796 GACGCTTCCT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.16
Consensus pattern (54 bp):
TGGCATAGCCACCAGAACAGATATATGTGGCAAAGCCACCAGATCAGATAATCG
Found at i:91560963 original size:28 final size:26
Alignment explanation
Indices: 91560901--91560974 Score: 85
Period size: 28 Copynumber: 2.8 Consensus size: 26
91560891 AAATTAACCC
** * *
91560901 TAGGGGTATAACGGTAATTTTGCACT
1 TAGGGGTATAATAGTAATTTTCCACA
91560927 TAGGGGTATAATAGTAATTTTCCATACA
1 TAGGGGTATAATAGTAATTTTCC--ACA
*
91560955 TAGGGGTATTATAGTAATTT
1 TAGGGGTATAATAGTAATTT
91560975 AGCTACTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
26 20 0.49
28 21 0.51
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (26 bp):
TAGGGGTATAATAGTAATTTTCCACA
Found at i:91562456 original size:26 final size:26
Alignment explanation
Indices: 91562421--91562528 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
91562411 TGAAATGCCC
* *
91562421 ATCATAGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
91562447 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
91562473 ATCACGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
91562499 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
91562525 ATCA
1 ATCA
91562529 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:91566925 original size:46 final size:46
Alignment explanation
Indices: 91566873--91567034 Score: 236
Period size: 46 Copynumber: 3.5 Consensus size: 46
91566863 AGTGTGCTTT
*
91566873 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
91566919 CTGATATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
91566965 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
91567011 ATGACA-GAAAATGAGTAAGACCAT
1 CTGATATG-AAATGAGTAAGACCAT
91567035 AACTGAAAGA
Statistics
Matches: 105, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
45 1 0.01
46 104 0.99
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:91567042 original size:92 final size:92
Alignment explanation
Indices: 91566874--91567054 Score: 238
Period size: 92 Copynumber: 2.0 Consensus size: 92
91566864 GTGTGCTTTC
*** * * *
91566874 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGA
1 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGA
* *** *
91566939 CTATGGTTGAAAGATACCATGGCAACG
66 CCATAACTGAAAGACACCATGGCAACG
91566966 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAG
1 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAG
*
91567030 ACCATAACTGAAAGACACTATGGCA
65 ACCATAACTGAAAGACACCATGGCA
91567055 TCATGTCAAA
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
91 1 0.01
92 75 0.99
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (92 bp):
TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGA
CCATAACTGAAAGACACCATGGCAACG
Found at i:91575089 original size:28 final size:28
Alignment explanation
Indices: 91575057--91575116 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
91575047 AAAAATGATA
91575057 TTTTTAAATATTTATGAAATTAGGTCAT
1 TTTTTAAATATTTATGAAATTAGGTCAT
* **
91575085 TTTTTTAATATTTATGGGATTAGGTCAT
1 TTTTTAAATATTTATGAAATTAGGTCAT
91575113 TTTT
1 TTTT
91575117 CTTTTTTTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.03, G:0.13, T:0.55
Consensus pattern (28 bp):
TTTTTAAATATTTATGAAATTAGGTCAT
Found at i:91575283 original size:22 final size:22
Alignment explanation
Indices: 91575256--91575302 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
91575246 TCTTAACCAA
* *
91575256 TTTAGGGTTTTTCTTTTAGGGT
1 TTTAGGGTATTTCTTTTAGGAT
*
91575278 TTTAGGGTATTTGTTTTAGGAT
1 TTTAGGGTATTTCTTTTAGGAT
91575300 TTT
1 TTT
91575303 TAAAAGACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.13, C:0.02, G:0.26, T:0.60
Consensus pattern (22 bp):
TTTAGGGTATTTCTTTTAGGAT
Found at i:91585950 original size:163 final size:163
Alignment explanation
Indices: 91585773--91586090 Score: 476
Period size: 163 Copynumber: 2.0 Consensus size: 163
91585763 ATTTCGTTCT
* * * *
91585773 TCTATTATTATTTTTTATTTGCAAATGACTATTAAAACTAATAAAATTTGCTTTGGGA-TTTTTC
1 TCTATTATTATTTTTTATTTCCAAATGAATATTAAAACTAATAAAATCTGCTTTGAGATTTTTTC
* * * *
91585837 CAACTGTTTAATAGATTTTATTCGATTTTGTTTCCAAATTAAAAGTAAATAAAATTCGTTTCGAA
66 C-ACCGTTTAACAGATTTTATTCAATTTTGTTTCCAAATTAAAAGTAAATAAAATCCGTTTCGAA
* *
91585902 ATTTATTCTTGCCGTTCAACAGATTTCTTTTTCC
130 ATTTATTCTCGCCCTTCAACAGATTTCTTTTTCC
*
91585936 TCTATTATTATTTTTTATTTCCAAATGAATATTAAAACTAATAAAATCTGTTTTGAGATTTTTTC
1 TCTATTATTATTTTTTATTTCCAAATGAATATTAAAACTAATAAAATCTGCTTTGAGATTTTTTC
* **
91586001 CGCCGTTTAACAGATTTTATTCAATTTTGTTTCCAAATTAAAAGTAAATAAAATCCGTTTCGGGA
66 CACCGTTTAACAGATTTTATTCAATTTTGTTTCCAAATTAAAAGTAAATAAAATCCGTTTCGAAA
* *
91586066 TTTGTTCTCGCCCTTCAACGGATTT
131 TTTATTCTCGCCCTTCAACAGATTT
91586091 TATTGTATTA
Statistics
Matches: 138, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
163 131 0.95
164 7 0.05
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.45
Consensus pattern (163 bp):
TCTATTATTATTTTTTATTTCCAAATGAATATTAAAACTAATAAAATCTGCTTTGAGATTTTTTC
CACCGTTTAACAGATTTTATTCAATTTTGTTTCCAAATTAAAAGTAAATAAAATCCGTTTCGAAA
TTTATTCTCGCCCTTCAACAGATTTCTTTTTCC
Found at i:91586384 original size:74 final size:73
Alignment explanation
Indices: 91586138--91586430 Score: 344
Period size: 74 Copynumber: 4.0 Consensus size: 73
91586128 TAAAGGTAAA
* * *
91586138 TAAAATGTGTTTCGGAATTGATTC-T-CACGTTCAACGATTTTATTCC-AA-TTTTTTTATTTCC
1 TAAAATCTGTTTTGGGATTGATTCTTGC-CGTTCAACGATTTTATTCCAAATTTTTTTTATTTCC
91586199 AAAAATGAG
65 AAAAATGAG
* * * * *
91586208 TAAAATCTGCTTCGAGATTGATTTTTGCCGTTCAACGATTTTATTCTAAATTTTTTTTATTTCCA
1 TAAAATCTGTTTTGGGATTGATTCTTGCCGTTCAACGATTTTATTCCAAATTTTTTTTATTTCCA
*
91586273 AAAATGAA
66 AAAATGAG
*
91586281 TAAAATCTGTTTCT-GGATTGATTCCTGCCGTTCAACGATTTTATTCCAAATTTTGTTTTATTTC
1 TAAAATCTGTTT-TGGGATTGATTCTTGCCGTTCAACGATTTTATTCCAAATTTT-TTTTATTTC
** *
91586345 CGTAAACGAG
64 CAAAAATGAG
* * ** *
91586355 TAAAATTTGTTTTGGGATTTATTCTTGCCGTTCAATAATTTTATTTCAAATTTTGTTTTATTTCC
1 TAAAATCTGTTTTGGGATTGATTCTTGCCGTTCAACGATTTTATTCCAAATTTT-TTTTATTTCC
*
91586420 AAAACTGAG
65 AAAAATGAG
91586429 TA
1 TA
91586431 TTTAAACTAA
Statistics
Matches: 189, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
70 19 0.10
71 19 0.10
72 3 0.02
73 69 0.37
74 79 0.42
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.45
Consensus pattern (73 bp):
TAAAATCTGTTTTGGGATTGATTCTTGCCGTTCAACGATTTTATTCCAAATTTTTTTTATTTCCA
AAAATGAG
Found at i:91586386 original size:147 final size:144
Alignment explanation
Indices: 91586136--91586423 Score: 377
Period size: 147 Copynumber: 2.0 Consensus size: 144
91586126 ATTAAAGGTA
*
91586136 AATAAAATGTGTTTCGGAATTGATTCTCACGTTCAACGATTTTATTCCAATTTTTTTATTTCCAA
1 AATAAAATCTGTTTCGGAATTGATTCTCACGTTCAACGATTTTATTCCAATTTTTTTATTTCCAA
* * *
91586201 AAATGAGTAAAATCTGCTTCGAGATTGATTTTTGCCGTTCAACGATTTTA-TTCTAAATTTT-TT
66 AAACGAGTAAAATCTGCTTCGAGATTGATTCTTGCCGTTCAACAATTTTATTTC-AAATTTTGTT
91586264 TTATTTCCAAAAATG
130 TTATTTCCAAAAATG
91586279 AATAAAATCTGTTTCTGG-ATTGATTCCTGC-CGTTCAACGATTTTATTCCAAATTTTGTTTTAT
1 AATAAAATCTGTTTC-GGAATTGATT-CT-CACGTTCAACGATTTTATTCC-AA-TTT-TTTTAT
** * * * * * *
91586342 TTCCGTAAACGAGTAAAATTTGTTTTGGGATTTATTCTTGCCGTTCAATAATTTTATTTCAAATT
60 TTCCAAAAACGAGTAAAATCTGCTTCGAGATTGATTCTTGCCGTTCAACAATTTTATTTCAAATT
91586407 TTGTTTTATTTCCAAAA
125 TTGTTTTATTTCCAAAA
91586424 CTGAGTATTT
Statistics
Matches: 125, Mismatches: 12, Indels: 11
0.84 0.08 0.07
Matches are distributed among these distances:
143 21 0.17
144 23 0.18
145 3 0.02
146 3 0.02
147 58 0.46
148 17 0.14
ACGTcount: A:0.28, C:0.14, G:0.12, T:0.45
Consensus pattern (144 bp):
AATAAAATCTGTTTCGGAATTGATTCTCACGTTCAACGATTTTATTCCAATTTTTTTATTTCCAA
AAACGAGTAAAATCTGCTTCGAGATTGATTCTTGCCGTTCAACAATTTTATTTCAAATTTTGTTT
TATTTCCAAAAATG
Found at i:91586693 original size:84 final size:84
Alignment explanation
Indices: 91586523--91586744 Score: 308
Period size: 84 Copynumber: 2.7 Consensus size: 84
91586513 AAGAAATTAA
* * *
91586523 AAATTAAATAAAATATATTTCGGGATTTATTCCTG-TCATTTAACAAGA--TTATTTTATTTTAT
1 AAATTAAATAAAATATGTTTCGGGATTTATTCCTGCT-GTTTAACAAGATTTTATTTGATTTTAT
*
91586585 TTTGTTTCCAAATTAGAATG
65 TTTGTTTCCAAATTAGAATC
* * * *
91586605 AAATTAAATAAAATCTGTTTCTGGATTTATTCTTGCTGTTTAATAAGATTTTATTTGATTTTATT
1 AAATTAAATAAAATATGTTTCGGGATTTATTCCTGCTGTTTAACAAGATTTTATTTGATTTTATT
91586670 TTGTTTCCAAATTAGAATC
66 TTGTTTCCAAATTAGAATC
* *
91586689 AAATTAAATAAAAAAATGTTTCGGGATTTATTCCCGCTGTTTAACAAG-TTTTATTT
1 AAATTAAAT-AAAATATGTTTCGGGATTTATTCCTGCTGTTTAACAAGATTTTATTT
91586745 TGATATAATT
Statistics
Matches: 122, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
82 40 0.33
83 1 0.01
84 49 0.40
85 32 0.26
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.46
Consensus pattern (84 bp):
AAATTAAATAAAATATGTTTCGGGATTTATTCCTGCTGTTTAACAAGATTTTATTTGATTTTATT
TTGTTTCCAAATTAGAATC
Found at i:91590413 original size:18 final size:19
Alignment explanation
Indices: 91590390--91590430 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
91590380 TATTTTAAAG
91590390 TTTATAG-T-TTAATTTTAT
1 TTTATAGCTATTAATTTT-T
91590408 TTTATAGCTATTAATTTTT
1 TTTATAGCTATTAATTTTT
91590427 TTTA
1 TTTA
91590431 AGATATTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.33
19 6 0.29
20 8 0.38
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (19 bp):
TTTATAGCTATTAATTTTT
Done.