Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 271 of 373
Found at i:92033779 original size:29 final size:29
Alignment explanation
Indices: 92033740--92033818 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
92033730 CTTAATAATC
*
92033740 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
92033770 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
92033799 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
92033819 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:92033861 original size:43 final size:43
Alignment explanation
Indices: 92033800--92033902 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
92033790 TGCATTTCAA
92033800 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
92033843 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
92033886 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
92033903 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:92035817 original size:37 final size:37
Alignment explanation
Indices: 92035767--92035846 Score: 115
Period size: 37 Copynumber: 2.2 Consensus size: 37
92035757 CTTATTACGA
* * *
92035767 AGTCTTACCCGGACATAATCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
*
92035804 AGTCTTACCCGGACAAAATCCCCACACGCAGTCATCG
1 AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
*
92035841 GGTCTT
1 AGTCTT
92035847 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.23
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
Found at i:92036075 original size:47 final size:47
Alignment explanation
Indices: 92035964--92036280 Score: 571
Period size: 47 Copynumber: 6.7 Consensus size: 47
92035954 GCCCTTCGGG
*
92035964 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
92036014 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
92036061 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
92036108 ACTTTCACATTCATCAAATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
92036155 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
92036202 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
92036249 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
92036281 ATACTATCAT
Statistics
Matches: 262, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
47 224 0.85
49 34 0.13
50 4 0.02
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:92036195 original size:22 final size:23
Alignment explanation
Indices: 92036162--92036242 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 23
92036152 TACACTTTCA
92036162 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
**** ***
92036185 CATT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
92036209 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
92036232 CATT-ATCACAT
1 CATTCATCACAT
92036243 ATATACACTT
Statistics
Matches: 41, Mismatches: 14, Indels: 7
0.66 0.23 0.11
Matches are distributed among these distances:
22 14 0.34
23 12 0.29
24 8 0.20
25 7 0.17
ACGTcount: A:0.31, C:0.28, G:0.10, T:0.31
Consensus pattern (23 bp):
CATTCATCACATCGGCCATTAGG
Found at i:92041842 original size:31 final size:31
Alignment explanation
Indices: 92041754--92041844 Score: 78
Period size: 31 Copynumber: 2.9 Consensus size: 31
92041744 GATGGGATGT
*
92041754 AAATTTTATCCCG-GGATTC-TCGAGTTTTCAG
1 AAATTTTATCCCGAGG-TTCTTAG-GTTTTCAG
* ** ** *
92041785 AAACTTTATCCTAAATTTCTCAGGTTTTCAG
1 AAATTTTATCCCGAGGTTCTTAGGTTTTCAG
*
92041816 AAATTTTATCCCGAGGTTCTTTGGTTTTC
1 AAATTTTATCCCGAGGTTCTTAGGTTTTC
92041845 GGAATTCAAT
Statistics
Matches: 44, Mismatches: 14, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
31 43 0.98
32 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.15, T:0.43
Consensus pattern (31 bp):
AAATTTTATCCCGAGGTTCTTAGGTTTTCAG
Found at i:92050949 original size:18 final size:17
Alignment explanation
Indices: 92050917--92050954 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
92050907 AATTTTTCAA
92050917 TAAATAAAAATATATAT
1 TAAATAAAAATATATAT
*
92050934 TAAATTAAAATA-ATA-
1 TAAATAAAAATATATAT
92050949 TAAATA
1 TAAATA
92050955 TATATTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 5 0.26
16 3 0.16
17 11 0.58
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
TAAATAAAAATATATAT
Found at i:92058316 original size:17 final size:16
Alignment explanation
Indices: 92058287--92058339 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
92058277 TTTGGTTAGC
92058287 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
92058303 TGTATTGAGATTAGAGG
1 TGTATTG-GATTAGAGG
92058320 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
92058336 TGTA
1 TGTA
92058340 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.26, C:0.00, G:0.36, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:92058404 original size:44 final size:45
Alignment explanation
Indices: 92058320--92058410 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
92058310 AGATTAGAGG
* * *
92058320 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
92058365 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
92058409 TG
1 TG
92058411 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:92058596 original size:18 final size:17
Alignment explanation
Indices: 92058575--92058609 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
92058565 TTATTATTAA
*
92058575 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
92058593 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
92058610 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:92058836 original size:18 final size:17
Alignment explanation
Indices: 92058815--92058849 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
92058805 TTATTATTAA
*
92058815 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
92058833 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
92058850 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:92059556 original size:18 final size:17
Alignment explanation
Indices: 92059533--92059569 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
92059523 AATTATTATT
92059533 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
92059549 AAATATATGATTTAATA
1 AAATATATGATTTAATA
92059566 AAAT
1 AAAT
92059570 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:92059579 original size:120 final size:120
Alignment explanation
Indices: 92058558--92059570 Score: 1787
Period size: 120 Copynumber: 8.4 Consensus size: 120
92058548 ATCATATTTA
92058558 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
92058623 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
92058678 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAACTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
92058743 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
92058798 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
92058863 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
92058918 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
92058983 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
92059038 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
92059103 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
92059158 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
92059223 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
92059278 AACATATTTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* * *
92059343 TATTCTTATATTAATTTACTAAAATCATAATATATGATACTATAAAATATAATTT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* * * * *
92059398 GAA-ATAATTATTATTAAATAAAATTTAATTAAAATATATGATTTAATAAAATTTTTAATAATCA
1 -AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
* * * *
92059462 ATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAATTT
65 ATATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
92059518 GAA-ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 -AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
92059571 TAAAATAATT
Statistics
Matches: 864, Mismatches: 28, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
120 862 1.00
121 2 0.00
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:92059654 original size:15 final size:15
Alignment explanation
Indices: 92059611--92059664 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 15
92059601 TATGAATTTG
92059611 TATAATTTAA-AATA
1 TATAATTTAATAATA
* *
92059625 -ATTA-TTATTAA-A
1 TATAATTTAATAATA
92059637 TATAATTTAATAATA
1 TATAATTTAATAATA
*
92059652 TATAATTTCATAA
1 TATAATTTAATAA
92059665 AATTCTTGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
12 4 0.13
13 8 0.26
14 6 0.19
15 13 0.42
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
TATAATTTAATAATA
Found at i:92059697 original size:71 final size:73
Alignment explanation
Indices: 92059616--92059751 Score: 231
Period size: 71 Copynumber: 1.9 Consensus size: 73
92059606 ATTTGTATAA
*
92059616 TTTAAAATAATTATTATTAAATATAATTTAAT-A-ATATATAATTTCATAAAATTCTTGATAATA
1 TTTAAAATAATTAATATTAAATATAATTTAATAAGATATATAATTTCATAAAATTCTTGATAATA
92059679 AATTTTCT
66 AATTTTCT
*
92059687 TTTAGAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTGATAAT
1 TTTAAAATAATTAATATTAAATATAATTTAATAA-GATATATAATTTCATAAAATTCTTGATAAT
92059752 TTAATCATGA
Statistics
Matches: 60, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
71 30 0.50
72 1 0.02
74 29 0.48
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (73 bp):
TTTAAAATAATTAATATTAAATATAATTTAATAAGATATATAATTTCATAAAATTCTTGATAATA
AATTTTCT
Found at i:92064213 original size:41 final size:42
Alignment explanation
Indices: 92064168--92064247 Score: 101
Period size: 41 Copynumber: 1.9 Consensus size: 42
92064158 ATGCAGGGGA
*
92064168 CACACGGCCT-ATCAACATACCCGTGTG-CAAGCCGTGTGTCT
1 CACACGGCCTGATC-ACACACCCGTGTGACAAGCCGTGTGTCT
* * *
92064209 CACACGGTCTGATCACACGCCCGTGTGACATGCCGTGTG
1 CACACGGCCTGATCACACACCCGTGTGACAAGCCGTGTG
92064248 GATTCAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
41 20 0.61
42 13 0.39
ACGTcount: A:0.20, C:0.34, G:0.25, T:0.21
Consensus pattern (42 bp):
CACACGGCCTGATCACACACCCGTGTGACAAGCCGTGTGTCT
Found at i:92066053 original size:17 final size:17
Alignment explanation
Indices: 92066023--92066066 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
92066013 AAATTATATA
*
92066023 ATATAATATAATTTACT
1 ATATATTATAATTTACT
*
92066040 ATATATTATTATTTACT
1 ATATATTATAATTTACT
*
92066057 -TATATAATAA
1 ATATATTATAA
92066067 GTAAGTACAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATATTATAATTTACT
Found at i:92082712 original size:17 final size:18
Alignment explanation
Indices: 92082692--92082732 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
92082682 ATATAATTTT
*
92082692 AAAATATAT-AATACATC
1 AAAATATATAAAAACATC
92082709 AAAA-ATATCAAAAACATC
1 AAAATATAT-AAAAACATC
92082727 AAAATA
1 AAAATA
92082733 AATATTTCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 4 0.20
17 4 0.20
18 11 0.55
19 1 0.05
ACGTcount: A:0.66, C:0.12, G:0.00, T:0.22
Consensus pattern (18 bp):
AAAATATATAAAAACATC
Found at i:92082857 original size:30 final size:30
Alignment explanation
Indices: 92082813--92082872 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
92082803 ACTTAACAAG
*
92082813 CAAATGCCTATAAAATAATAACCAAATTAA
1 CAAATGCCTATAAAATAATAACAAAATTAA
* * *
92082843 CAAATGTCTTTAAAATAATAATAAAATTAA
1 CAAATGCCTATAAAATAATAACAAAATTAA
92082873 TAATAAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.57, C:0.12, G:0.03, T:0.28
Consensus pattern (30 bp):
CAAATGCCTATAAAATAATAACAAAATTAA
Found at i:92082875 original size:12 final size:12
Alignment explanation
Indices: 92082853--92082881 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
92082843 CAAATGTCTT
92082853 TAAAA-TAATAA
1 TAAAATTAATAA
92082864 TAAAATTAATAA
1 TAAAATTAATAA
92082876 TAAAAT
1 TAAAAT
92082882 AAGTTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
TAAAATTAATAA
Found at i:92083488 original size:19 final size:19
Alignment explanation
Indices: 92083464--92083502 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
92083454 AGAAGAAAAG
92083464 ACCCTTTAGAACAATCGTT
1 ACCCTTTAGAACAATCGTT
92083483 ACCCTTTAGAACAATCGTT
1 ACCCTTTAGAACAATCGTT
92083502 A
1 A
92083503 AACCTTGCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.26, G:0.10, T:0.31
Consensus pattern (19 bp):
ACCCTTTAGAACAATCGTT
Found at i:92085496 original size:15 final size:15
Alignment explanation
Indices: 92085455--92085506 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 15
92085445 GTTATATTAT
*
92085455 AAGTTAAATAATAATA
1 AAGTTAAA-AATAAGA
*
92085471 AAGTAAATAAAATAAGTA
1 AAGT-TA-AAAATAAG-A
92085489 AAGTTAAAAATAAGA
1 AAGTTAAAAATAAGA
92085504 AAG
1 AAG
92085507 CATAAAGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
15 4 0.13
16 12 0.40
17 7 0.23
18 7 0.23
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.23
Consensus pattern (15 bp):
AAGTTAAAAATAAGA
Found at i:92089070 original size:47 final size:47
Alignment explanation
Indices: 92089008--92089133 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 47
92088998 CTTTACATAA
* * * * *
92089008 TGATGCCATAGCCCAGCTATGATCTTACAC-GTAATCACATATCTCAC
1 TGATGCCATATCCCAGATATGGTCTTACACAGT-AGCACATATCACAC
* * *
92089055 TGATGTCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 TGATGCCATATCCCAGATATGGTCTTACACAGTAGCACATATCACAC
* *
92089102 CGATGCCATATCCCAGATATGGTCTTATACAG
1 TGATGCCATATCCCAGATATGGTCTTACACAG
92089134 AAATCACTTG
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
47 66 0.97
48 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (47 bp):
TGATGCCATATCCCAGATATGGTCTTACACAGTAGCACATATCACAC
Found at i:92089192 original size:31 final size:31
Alignment explanation
Indices: 92089157--92089363 Score: 290
Period size: 31 Copynumber: 6.7 Consensus size: 31
92089147 CTTGTCACTT
* *
92089157 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* ** *
92089188 GTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
92089219 GTAGCTGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
92089250 GTAGCCGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
92089281 GTAGCAGAAGCTACCAC-TTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
92089311 GTAGCTGAAACTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
92089342 GTAGCTGAAGCTACCACTTTTC
1 GTAGCCGAAGCTACCACTTTTC
92089364 GGTTGTCATT
Statistics
Matches: 159, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
30 27 0.17
31 132 0.83
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:92089340 original size:92 final size:93
Alignment explanation
Indices: 92089157--92089363 Score: 317
Period size: 92 Copynumber: 2.2 Consensus size: 93
92089147 CTTGTCACTT
* * * ** *
92089157 GTAGCCAAAGCTACCACTATTCACTGATCAGGTAGCTGGTGCTACCATTTTTCACTGATCAGGTA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCATCTTTCACTGATCAGGTA
* *
92089222 GCTGGAGCTACCACTTTTCACTGATCAG
66 GCTGAAACTACCACTTTTCACTGATCAG
*
92089250 GTAGCCGAAGCTACCACTTTTCACTGATTAGGTAGCAGAAGCTACCA-CTTTCACTGATCAGGTA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCATCTTTCACTGATCAGGTA
92089314 GCTGAAACTACCACTTTTCACTGATCAG
66 GCTGAAACTACCACTTTTCACTGATCAG
*
92089342 GTAGCTGAAGCTACCACTTTTC
1 GTAGCCGAAGCTACCACTTTTC
92089364 GGTTGTCATT
Statistics
Matches: 104, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 63 0.61
93 41 0.39
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (93 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAGGTAGCAGAAGCTACCATCTTTCACTGATCAGGTA
GCTGAAACTACCACTTTTCACTGATCAG
Found at i:92089438 original size:50 final size:51
Alignment explanation
Indices: 92089342--92089470 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
92089332 CACTGATCAG
* * * **
92089342 GTAGCTGAAGCTACCACTTTTCGGTTGTCATTTGCCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGCCATTGATCAGATAAGT
92089393 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCC-TTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTG-CCATTGATCAGATAAGT
92089443 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
92089471 TTCCATGGTC
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 47 0.66
51 24 0.34
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGCCATTGATCAGATAAGT
Found at i:92092117 original size:24 final size:24
Alignment explanation
Indices: 92092082--92092146 Score: 76
Period size: 28 Copynumber: 2.5 Consensus size: 24
92092072 ATCACAAAAC
92092082 ACAAAGTGCAAATAATGATAAGCA
1 ACAAAGTGCAAATAATGATAAGCA
*
92092106 ACTAAGTGCAAAATAATAATGATAAGCA
1 ACAAAGTGC---A-AATAATGATAAGCA
*
92092134 CCAAAGTGCAAAT
1 ACAAAGTGCAAAT
92092147 TTTTACAACG
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
24 11 0.32
25 1 0.03
27 1 0.03
28 21 0.62
ACGTcount: A:0.52, C:0.14, G:0.15, T:0.18
Consensus pattern (24 bp):
ACAAAGTGCAAATAATGATAAGCA
Found at i:92092128 original size:28 final size:28
Alignment explanation
Indices: 92092092--92092145 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
92092082 ACAAAGTGCA
*
92092092 AATAATGATAAGCAACTAAGTGCAAAAT
1 AATAATGATAAGCAACAAAGTGCAAAAT
*
92092120 AATAATGATAAGCACCAAAGTGCAAA
1 AATAATGATAAGCAACAAAGTGCAAA
92092146 TTTTTACAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.54, C:0.13, G:0.15, T:0.19
Consensus pattern (28 bp):
AATAATGATAAGCAACAAAGTGCAAAAT
Found at i:92093404 original size:44 final size:44
Alignment explanation
Indices: 92093354--92093441 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
92093344 CATTCCTTTC
92093354 TACTACCACTATGTATCTTCTAACTTTCTAAATTCCTACTTCTA
1 TACTACCACTATGTATCTTCTAACTTTCTAAATTCCTACTTCTA
*
92093398 TACTACCACTATGTATCTTTTAACTTTCTAAATTCCTACTTCTA
1 TACTACCACTATGTATCTTCTAACTTTCTAAATTCCTACTTCTA
92093442 CCATAACAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.27, C:0.26, G:0.02, T:0.44
Consensus pattern (44 bp):
TACTACCACTATGTATCTTCTAACTTTCTAAATTCCTACTTCTA
Found at i:92097796 original size:10 final size:10
Alignment explanation
Indices: 92097781--92097840 Score: 88
Period size: 10 Copynumber: 6.0 Consensus size: 10
92097771 TAATTTTAGG
92097781 ATTTAT-TTT
1 ATTTATCTTT
92097790 CATTTATCTTT
1 -ATTTATCTTT
92097801 ATTTATCTTT
1 ATTTATCTTT
92097811 ATTTATCTTT
1 ATTTATCTTT
92097821 ATTTAT-TTGT
1 ATTTATCTT-T
92097831 ATTTATCTTT
1 ATTTATCTTT
92097841 TAGAATTTTA
Statistics
Matches: 47, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
9 2 0.04
10 40 0.85
11 5 0.11
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:92097825 original size:14 final size:15
Alignment explanation
Indices: 92097782--92097840 Score: 52
Period size: 16 Copynumber: 3.9 Consensus size: 15
92097772 AATTTTAGGA
92097782 TTTATTT-TCATTTAT
1 TTTATTTATC-TTTAT
92097797 CTTTATTTATCTTTA-
1 -TTTATTTATCTTTAT
*
92097812 TTTATCTT-TATTTAT
1 TTTAT-TTATCTTTAT
92097827 TTGTATTTATCTTT
1 TT-TATTTATCTTT
92097841 TAGAATTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 10 0.28
15 6 0.17
16 18 0.50
17 2 0.06
ACGTcount: A:0.19, C:0.08, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTATTTATCTTTAT
Found at i:92099362 original size:13 final size:13
Alignment explanation
Indices: 92099344--92099373 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
92099334 TTCCTGTAAA
92099344 CATTTCATACAAC
1 CATTTCATACAAC
*
92099357 CATTTCATATAAC
1 CATTTCATACAAC
92099370 CATT
1 CATT
92099374 CCATCTTACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (13 bp):
CATTTCATACAAC
Found at i:92099534 original size:46 final size:46
Alignment explanation
Indices: 92099459--92099716 Score: 374
Period size: 46 Copynumber: 5.6 Consensus size: 46
92099449 GATGTCATAA
* * *
92099459 TATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATGG
1 TATCTTTCAACCATGGTCTTACTC-ATTTCATGTCATGTTGCCATGG
* **
92099505 TATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATGG
1 TATCTTTCAACCATGGTCTTACTCA-TTTCATGTCATGTTGCCATGG
*
92099552 TATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATGG
1 TATCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGG
* *
92099598 TATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGG
1 TATCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGG
* * *
92099644 TATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGG
1 TATCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGG
*
92099690 TATCTTTCAACCATGGTCTTACACATT
1 TATCTTTCAACCATGGTCTTACTCATT
92099717 CCATATCAGA
Statistics
Matches: 197, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
46 158 0.80
47 39 0.20
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
TATCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGG
Found at i:92106562 original size:11 final size:11
Alignment explanation
Indices: 92106546--92106570 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
92106536 TTATATATAC
92106546 TAATAAAATAA
1 TAATAAAATAA
92106557 TAATAAAATAA
1 TAATAAAATAA
92106568 TAA
1 TAA
92106571 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:92109196 original size:19 final size:19
Alignment explanation
Indices: 92109172--92109209 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
92109162 TACAAATATA
92109172 ATTAATAAAATTATTATTT
1 ATTAATAAAATTATTATTT
*
92109191 ATTAATAAACTTATTATTT
1 ATTAATAAAATTATTATTT
92109210 TAACATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTAATAAAATTATTATTT
Found at i:92109217 original size:19 final size:19
Alignment explanation
Indices: 92109175--92109218 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
92109165 AAATATAATT
*
92109175 AATAAAATTATTATTTATT
1 AATAAAATTATTATTTATA
*
92109194 AATAAACTTATTATTT-TA
1 AATAAAATTATTATTTATA
92109212 ACATAAA
1 A-ATAAA
92109219 TAAAAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 2 0.09
19 20 0.91
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (19 bp):
AATAAAATTATTATTTATA
Found at i:92119974 original size:9 final size:9
Alignment explanation
Indices: 92119957--92119993 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
92119947 TGAGTTTTCG
92119957 AATTCGAAT
1 AATTCGAAT
*
92119966 AACTCGAAT
1 AATTCGAAT
92119975 AATTCGAAT
1 AATTCGAAT
92119984 AATTCGAAT
1 AATTCGAAT
92119993 A
1 A
92119994 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:92120069 original size:21 final size:21
Alignment explanation
Indices: 92120027--92120069 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
92120017 TTACCCCAAA
* *
92120027 CTCTCAAACCTTTTGACTTTT
1 CTCTCAAAACTTATGACTTTT
92120048 CTCTCAAAACTTAT-ACTCTTT
1 CTCTCAAAACTTATGACT-TTT
92120069 C
1 C
92120070 CCACTTTCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.23, C:0.30, G:0.02, T:0.44
Consensus pattern (21 bp):
CTCTCAAAACTTATGACTTTT
Found at i:92120235 original size:19 final size:20
Alignment explanation
Indices: 92120195--92120235 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
92120185 CAAAAACCCT
*
92120195 CAAAACTTTTTATTTCCCCC
1 CAAAACTTTTTATCTCCCCC
92120215 CAAAA-TTTTTA-CTCCCTCC
1 CAAAACTTTTTATCTCCC-CC
92120234 CA
1 CA
92120236 CTTTCCCCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 4 0.21
19 10 0.53
20 5 0.26
ACGTcount: A:0.27, C:0.37, G:0.00, T:0.37
Consensus pattern (20 bp):
CAAAACTTTTTATCTCCCCC
Found at i:92120241 original size:30 final size:31
Alignment explanation
Indices: 92120207--92120266 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
92120197 AAACTTTTTA
*
92120207 TTTCCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTCCCCCCAAAACTTTTACTCCCTTCCCAC
*
92120237 TTTCCCCCTAAAACTTTTACTCCCTTCCCA
1 TTTCCCCCCAAAACTTTTACTCCCTTCCCA
92120267 TCCCACCTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.45, G:0.00, T:0.35
Consensus pattern (31 bp):
TTTCCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:92120539 original size:41 final size:41
Alignment explanation
Indices: 92120494--92120591 Score: 187
Period size: 41 Copynumber: 2.4 Consensus size: 41
92120484 ATATATACTA
92120494 TTTATATTATTAAATTAAATTAAATTTCACATTTTATATTT
1 TTTATATTATTAAATTAAATTAAATTTCACATTTTATATTT
92120535 TTTATATTATTAAATTAAATTAAATTTCACATTTTATATTT
1 TTTATATTATTAAATTAAATTAAATTTCACATTTTATATTT
*
92120576 TTTATATTATTGAATT
1 TTTATATTATTAAATT
92120592 GTTTAGTCAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.38, C:0.04, G:0.01, T:0.57
Consensus pattern (41 bp):
TTTATATTATTAAATTAAATTAAATTTCACATTTTATATTT
Found at i:92121063 original size:20 final size:20
Alignment explanation
Indices: 92121038--92121077 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
92121028 GATAAAATAT
92121038 GATTCACCAACTTGATTAAC
1 GATTCACCAACTTGATTAAC
92121058 GATTCACCAACTTGATTAAC
1 GATTCACCAACTTGATTAAC
92121078 TCGAAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.30
Consensus pattern (20 bp):
GATTCACCAACTTGATTAAC
Found at i:92121425 original size:22 final size:24
Alignment explanation
Indices: 92121379--92121425 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
92121369 AGGTTATATA
*
92121379 TTATTTTTATAATATTATATATTT
1 TTATTTTTATAATATTACATATTT
*
92121403 TTATTTTTATTA-ATT-CATATTT
1 TTATTTTTATAATATTACATATTT
92121425 T
1 T
92121426 AATAATATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 7 0.33
23 3 0.14
24 11 0.52
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (24 bp):
TTATTTTTATAATATTACATATTT
Found at i:92121552 original size:26 final size:25
Alignment explanation
Indices: 92121467--92121553 Score: 70
Period size: 26 Copynumber: 3.4 Consensus size: 25
92121457 AATATATTAT
92121467 TTTATTAAATTATATTTAATACA-AA
1 TTTATTAAATTATATTTAATA-ATAA
* * * * *
92121492 TTATGTTAAAATATGATTAAATTATTTA
1 TT-TATTAAATTAT-ATTTAA-TAATAA
92121520 TTT-TTAAATTATATTTAATAATAA
1 TTTATTAAATTATATTTAATAATAA
92121544 TCTTATTAAA
1 T-TTATTAAA
92121554 ATTTAATAAC
Statistics
Matches: 47, Mismatches: 9, Indels: 11
0.70 0.13 0.16
Matches are distributed among these distances:
24 5 0.11
25 9 0.19
26 22 0.47
27 6 0.13
28 5 0.11
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (25 bp):
TTTATTAAATTATATTTAATAATAA
Found at i:92121553 original size:52 final size:53
Alignment explanation
Indices: 92121392--92121555 Score: 145
Period size: 52 Copynumber: 2.9 Consensus size: 53
92121382 TTTTTATAAT
* * * * * *
92121392 ATTATATATTTTTATTTTTATTAATTCATATTTTAATAATATTTCTATTAAGAATGTT
1 ATTAAATATATTTATTTTTA--AATT-ATA-TTTAATAATAATTATATTAA-AATATG
*
92121450 ATTAAATAATATATTATTTTATTAAATTATATTTAATACA-AATTATGTTAAAATATG
1 ATTAAAT-ATAT-TTA-TTT-TTAAATTATATTTAATA-ATAATTATATTAAAATATG
92121507 ATTAAAT-TATTTATTTTTAAATTATATTTAATAATAATCT-TATTAAAAT
1 ATTAAATATATTTATTTTTAAATTATATTTAATAATAAT-TATATTAAAAT
92121556 TTAATAACAA
Statistics
Matches: 91, Mismatches: 8, Indels: 20
0.76 0.07 0.17
Matches are distributed among these distances:
51 1 0.01
52 28 0.31
53 4 0.04
54 3 0.03
55 3 0.03
57 11 0.12
58 21 0.23
59 7 0.08
60 7 0.08
61 3 0.03
62 3 0.03
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (53 bp):
ATTAAATATATTTATTTTTAAATTATATTTAATAATAATTATATTAAAATATG
Found at i:92121748 original size:16 final size:16
Alignment explanation
Indices: 92121724--92121758 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
92121714 ATTACTGATA
*
92121724 ACAGCTCTATTCTATT
1 ACAGCTCTATTCCATT
*
92121740 ACAGTTCTATTCCATT
1 ACAGCTCTATTCCATT
92121756 ACA
1 ACA
92121759 ACCCTATCCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.26, G:0.06, T:0.40
Consensus pattern (16 bp):
ACAGCTCTATTCCATT
Found at i:92128060 original size:39 final size:39
Alignment explanation
Indices: 92128006--92128084 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
92127996 TCACCGTTCA
**
92128006 TGGAATTAGAATTCTGAATTTTTTGTATGATTTCTCCAT
1 TGGAATTAGAATTCTGAATTTTGCGTATGATTTCTCCAT
92128045 TGGAATTAGAATTCTGAATTTTGCGTATGATTTCTCCAT
1 TGGAATTAGAATTCTGAATTTTGCGTATGATTTCTCCAT
92128084 T
1 T
92128085 CCCGATGGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.25, C:0.11, G:0.16, T:0.47
Consensus pattern (39 bp):
TGGAATTAGAATTCTGAATTTTGCGTATGATTTCTCCAT
Found at i:92133794 original size:49 final size:49
Alignment explanation
Indices: 92133685--92134143 Score: 358
Period size: 49 Copynumber: 9.7 Consensus size: 49
92133675 AGGGTACGAT
* * * * * *
92133685 GCCGATGCCATGTTCCAAACATGGTCTTACACTGG--CTCACACATCTAA
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATATATCGAG
* ** *
92133733 GTCGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGAG
* * *
92133782 GCCGATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCTG-T
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATC-GAG
* * *
92133831 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGAG
* * * * * *
92133880 GTCGATGCCATGT-CTAGACAGGTCTTATACTAGCTCTCATCTATCGGG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGAG
* * * * * * *
92133928 GTCGATGCCATGTCCTAGATAGGTCTTACACT-G---ACACATGTC-AA
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGAG
* * * *
92133972 GCCGATGCCATGTCCCAGACAGGTTTTATACTAGCT-TGCATATCTCGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCT-CATATATCGAG
* * * * * * * * *
92134021 GCTGATG-CATGTGCTAGACATGTCTTATACTGGCTCT--TGTCTCAAT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGAG
* *
92134067 GCCGATG-CATGTCCCAGACATGTCTTACACTGGCTCTCATA-AT-GCG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGAG
* *
92134113 GCCGATG-CATGTCACAGACATGTCTTACACT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACT
92134144 AACGCACATA
Statistics
Matches: 332, Mismatches: 66, Indels: 28
0.78 0.15 0.07
Matches are distributed among these distances:
44 27 0.08
45 6 0.02
46 69 0.21
47 12 0.04
48 91 0.27
49 126 0.38
50 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGAG
Found at i:92133925 original size:146 final size:144
Alignment explanation
Indices: 92133685--92134143 Score: 431
Period size: 141 Copynumber: 3.2 Consensus size: 144
92133675 AGGGTACGAT
* * * * * * *
92133685 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGC--TCACACATCTAAGTCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGACTTTCATATATCGAGGTCGATGCCATGTCC
* * * *
92133748 CAGACAGGTCTTACACTAACTTTCATATATCGAGGCCGATGCCATGTCCCAGATAGGTCTTACAC
65 TAGACAGGTCTTATACTAGCTCTCATATATCGAGGCCGATGCCATGTCCCAGATAGGTCTTACAC
92133813 TGGCTCTCATCTATCTG
130 TGGCTCTCAT-TATC-G
*
92133830 TGTCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTCGATGCCATGT-C
1 -GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTCGATGCCATGTCC
* * * *
92133894 TAGACAGGTCTTATACTAGCTCTCATCTATCGGGGTCGATGCCATGTCCTAGATAGGTCTTACAC
65 TAGACAGGTCTTATACTAGCTCTCATATATCGAGGCCGATGCCATGTCCCAGATAGGTCTTACAC
* * * *
92133959 T-G-ACACA-TGTCAA
130 TGGCTCTCATTATC-G
* * * * *
92133972 GCCGATGCCATGTCCCAGACAGGTTTTATACT-AGCTTGCATATCTCGAGG-CTGATG-CATGTG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTTCATATATCGAGGTC-GATGCCATGTC
* * * * * * * *
92134034 CTAGACATGTCTTATACTGGCTCT--TGTCTCAATGCCGATG-CATGTCCCAGACATGTCTTACA
64 CTAGACAGGTCTTATACTAGCTCTCATATATCGAGGCCGATGCCATGTCCCAGATAGGTCTTACA
*
92134096 CTGGCTCTCATAATGCG
129 CTGGCTCTCATTAT-CG
* *
92134113 GCCGATG-CATGTCACAGACATGTCTTACACT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACT
92134144 AACGCACATA
Statistics
Matches: 258, Mismatches: 46, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
138 21 0.08
139 11 0.04
140 30 0.12
141 77 0.30
142 4 0.02
144 3 0.01
145 14 0.05
146 77 0.30
147 21 0.08
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (144 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTCGATGCCATGTCCT
AGACAGGTCTTATACTAGCTCTCATATATCGAGGCCGATGCCATGTCCCAGATAGGTCTTACACT
GGCTCTCATTATCG
Found at i:92133960 original size:97 final size:98
Alignment explanation
Indices: 92133685--92134143 Score: 394
Period size: 97 Copynumber: 4.8 Consensus size: 98
92133675 AGGGTACGAT
* * * * ***
92133685 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACA-C-ATCTAAGTCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTAGCTCTCATCTATCGGGGTCGATGCCATGTCC
*
92133748 CAGACAGGTCTTACACTAACTTTCATATATCGAG
65 CAGACAGGTCTTACACTGACTTTCATATATCGAG
* * * *
92133782 GCCGATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCTGTGTCGATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATCTATCGGGGTCGATGCCATGTCCC
92133847 AGACAGGTCTTACACTGACTTTCATATATCGAG
66 AGACAGGTCTTACACTGACTTTCATATATCGAG
* * * *
92133880 GTCGATGCCATGT-CTAGACAGGTCTTATACTAGCTCTCATCTATCGGGGTCGATGCCATGTCCT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATCTATCGGGGTCGATGCCATGTCCC
* * * *
92133944 AGATAGGTCTTACACTGA----CACATGTC-AA
66 AGACAGGTCTTACACTGACTTTCATATATCGAG
* * * * * *
92133972 GCCGATGCCATGTCCCAGACAGGTTTTATACTAGCT-TGCATATCTCGAGG-CTGATG-CATGTG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCT-CATCTATCGGGGTC-GATGCCATGTC
* * * * * * * * *
92134034 CTAGACATGTCTTATACTGGC--TCTTGTCTCAAT
64 CCAGACAGGTCTTACACTGACTTTCATATATCGAG
* * * * * *
92134067 GCCGATG-CATGTCCCAGACATGTCTTACACTGGCTCTCAT-AAT-GCGGCCGATG-CATGTCAC
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATCTATCGGGGTCGATGCCATGTCCC
*
92134128 AGACATGTCTTACACT
66 AGACAGGTCTTACACT
92134144 AACGCACATA
Statistics
Matches: 306, Mismatches: 46, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
92 63 0.21
93 41 0.13
94 31 0.10
95 9 0.03
96 18 0.06
97 80 0.26
98 64 0.21
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (98 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATCTATCGGGGTCGATGCCATGTCCC
AGACAGGTCTTACACTGACTTTCATATATCGAG
Found at i:92134046 original size:92 final size:95
Alignment explanation
Indices: 92133734--92134143 Score: 306
Period size: 92 Copynumber: 4.3 Consensus size: 95
92133724 CACATCTAAG
* * * ** * *
92133734 TCGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGCCGATGCCATGTCCCA
1 TCGATGCCATGTCCTAGACAGGTCTTACACTGAC--ACAT-GCTCAATGCCGATGCCATGTCCCA
* * * * *
92133799 GATAGGTCTTACACTGGCTCTCATCTATCTGTG-
63 GACAGGTCTTATACTAGCTCTCATATATC-GGGC
* * ** * * * *
92133832 TCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTCGATGCCATGT-CTA
1 TCGATGCCATGTCCTAGACAGGTCTTACACTGAC--ACAT-GCTCAATGCCGATGCCATGTCCCA
* *
92133896 GACAGGTCTTATACTAGCTCTCATCTATCGGGG
63 GACAGGTCTTATACTAGCTCTCATATATCGGGC
*
92133929 TCGATGCCATGTCCTAGATAGGTCTTACACTGACACATG-TCAA-GCCGATGCCATGTCCCAGAC
1 TCGATGCCATGTCCTAGACAGGTCTTACACTGACACATGCTCAATGCCGATGCCATGTCCCAGAC
* *
92133992 AGGTTTTATACTAGCT-TGCATATCTCGAGGC
66 AGGTCTTATACTAGCTCT-CATATATCG-GGC
* * * * * *
92134023 T-GATG-CATGTGCTAGACATGTCTTATACTGGCTCTTGTCTCAATGCCGATG-CATGTCCCAGA
1 TCGATGCCATGTCCTAGACAGGTCTTACACTGACACATG-CTCAATGCCGATGCCATGTCCCAGA
* * *
92134085 CATGTCTTACACTGGCTCTCATA-AT-GCGGC
65 CAGGTCTTATACTAGCTCTCATATATCG-GGC
*
92134115 -CGATG-CATGTCAC-AGACATGTCTTACACT
1 TCGATGCCATGTC-CTAGACAGGTCTTACACT
92134144 AACGCACATA
Statistics
Matches: 269, Mismatches: 33, Indels: 26
0.82 0.10 0.08
Matches are distributed among these distances:
92 66 0.25
93 36 0.13
94 35 0.13
95 11 0.04
96 2 0.01
97 60 0.22
98 59 0.22
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (95 bp):
TCGATGCCATGTCCTAGACAGGTCTTACACTGACACATGCTCAATGCCGATGCCATGTCCCAGAC
AGGTCTTATACTAGCTCTCATATATCGGGC
Found at i:92134086 original size:46 final size:45
Alignment explanation
Indices: 92133968--92134139 Score: 148
Period size: 46 Copynumber: 3.7 Consensus size: 45
92133958 CTGACACATG
* * * *
92133968 TCAAGCCGATGCCATGTCCCAGACAGGTTTTATACTAGCTTGCATATC
1 TCAAGCCGATG-CATGTCCCAGACATGTCTTATACTGGC-T-CTTATC
* * * * *
92134016 TCGAGGCTGATGCATGTGCTAGACATGTCTTATACTGGCTCTTGTC
1 TC-AAGCCGATGCATGTCCCAGACATGTCTTATACTGGCTCTTATC
* * *
92134062 TCAATGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAA
1 TCAA-GCCGATGCATGTCCCAGACATGTCTTATACTGGCTCTTAT-C
* *
92134109 TGC-GGCCGATGCATGTCACAGACATGTCTTA
1 T-CAAGCCGATGCATGTCCCAGACATGTCTTA
92134140 CACTAACGCA
Statistics
Matches: 101, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
45 1 0.01
46 66 0.65
47 2 0.02
48 25 0.25
49 7 0.07
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.30
Consensus pattern (45 bp):
TCAAGCCGATGCATGTCCCAGACATGTCTTATACTGGCTCTTATC
Found at i:92134117 original size:141 final size:142
Alignment explanation
Indices: 92133685--92134143 Score: 409
Period size: 146 Copynumber: 3.2 Consensus size: 142
92133675 AGGGTACGAT
* * * * * * *
92133685 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGC-T-CACACATCTAAGTCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGACTTGCATATATCGAGGTCGATGCCATGT-C
* * * * * *
92133748 CAGACAGGTCTTACACTAACTTTCATATATCGAGGCCGATGCCATGTCCCAGATAGGTCTTACAC
64 TAGACAGGTCTTATACTAGCTCT-ATCTATCAAGGCCGATGCCATGTCCCAGATAGGTCTTACAC
*
92133813 TGGCTCTCATCTATCTG
128 TGGCTCTCA--TATCAG
* *
92133830 TGTCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTCGATGCCATGTCT
1 -GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTGCATATATCGAGGTCGATGCCATGTCT
** * *
92133895 AGACAGGTCTTATACTAGCTCTCATCTATCGGGGTCGATGCCATGTCCTAGATAGGTCTTACACT
65 AGACAGGTCTTATACTAGCTCT-ATCTATCAAGGCCGATGCCATGTCCCAGATAGGTCTTACACT
* * * *
92133960 -G-ACACATGTCAA
129 GGCTCTCATATCAG
* * *
92133972 GCCGATGCCATGTCCCAGACAGGTTTTATACT-AGCTTGCATATCTCGAGG-CTGATG-CATGTG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTGCATATATCGAGGTC-GATGCCATGT-
* * * * * * *
92134034 CTAGACATGTCTTATACTGGCTCT-TGTCTCAATGCCGATG-CATGTCCCAGACATGTCTTACAC
63 CTAGACAGGTCTTATACTAGCTCTATCTATCAAGGCCGATGCCATGTCCCAGATAGGTCTTACAC
92134097 TGGCTCTCATAATGC-G
128 TGGCTCTCAT-AT-CAG
* *
92134113 GCCGATG-CATGTCACAGACATGTCTTACACT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACT
92134144 AACGCACATA
Statistics
Matches: 259, Mismatches: 45, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
138 21 0.08
139 11 0.04
140 31 0.12
141 77 0.30
142 4 0.02
144 3 0.01
145 14 0.05
146 78 0.30
147 20 0.08
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (142 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTGCATATATCGAGGTCGATGCCATGTCTA
GACAGGTCTTATACTAGCTCTATCTATCAAGGCCGATGCCATGTCCCAGATAGGTCTTACACTGG
CTCTCATATCAG
Found at i:92134830 original size:20 final size:20
Alignment explanation
Indices: 92134805--92134843 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
92134795 AAAATTTCAA
92134805 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
92134825 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
92134844 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:92136427 original size:212 final size:212
Alignment explanation
Indices: 92136060--92136484 Score: 796
Period size: 212 Copynumber: 2.0 Consensus size: 212
92136050 ACCACTTGAA
92136060 TACGGAAGGACATTTGGGATTATCATACACCAAATAGGGTGCCAAAGCCATGTCCTAGACATGGT
1 TACGGAAGGACATTTGGGATTATCATACACCAAATAGGGTGCCAAAGCCATGTCCTAGACATGGT
*
92136125 GTCACATGGAACTACACATTGATGCCATATCCCAGATATGGTCTTATACAAAGTCTCGATTTAGT
66 GTCACATGGAACTACACATTGATGCCATATCCCAGATATGGTCTTATACAAAGTCTCGATTCAGT
* * *
92136190 GTCGACGCCATGTCCTAGACATGGTCTTATATGGGACCTCATATCGATGCCATGTCCCAAACATG
131 GTCGACGCCATGTCCCAGACATGGTCTTATACGGGACCTCATATCGATGCAATGTCCCAAACATG
92136255 GTCTTATACGAAATCAC
196 GTCTTATACGAAATCAC
92136272 TACGGAAGGACATTTGGGATTATCATACACCAAATAGGGTGCCAAAGCCATGTCCTAGACATGGT
1 TACGGAAGGACATTTGGGATTATCATACACCAAATAGGGTGCCAAAGCCATGTCCTAGACATGGT
92136337 GTCACATGGAACTACACATTGATGCCATATCCCAGATATGGTCTTATACAAAGTCTCGATTCAGT
66 GTCACATGGAACTACACATTGATGCCATATCCCAGATATGGTCTTATACAAAGTCTCGATTCAGT
**
92136402 GTCGACGTTATGTCCCAGACATGGTCTTATACGGGACCTCATATCGATGCAATGTCCCAAACATG
131 GTCGACGCCATGTCCCAGACATGGTCTTATACGGGACCTCATATCGATGCAATGTCCCAAACATG
92136467 GTCTTATACGAAATCAC
196 GTCTTATACGAAATCAC
92136484 T
1 T
92136485 TAACGATACC
Statistics
Matches: 207, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
212 207 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (212 bp):
TACGGAAGGACATTTGGGATTATCATACACCAAATAGGGTGCCAAAGCCATGTCCTAGACATGGT
GTCACATGGAACTACACATTGATGCCATATCCCAGATATGGTCTTATACAAAGTCTCGATTCAGT
GTCGACGCCATGTCCCAGACATGGTCTTATACGGGACCTCATATCGATGCAATGTCCCAAACATG
GTCTTATACGAAATCAC
Found at i:92138297 original size:37 final size:37
Alignment explanation
Indices: 92138244--92138334 Score: 137
Period size: 37 Copynumber: 2.5 Consensus size: 37
92138234 AGGAGTTATG
* *
92138244 ATCTTAAATCAACTAACTTAAAGATGAATAGGTTGCA
1 ATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGCA
* **
92138281 ATCTTAAATCGGCTAACTCAAAGATGAATAGGTTGTG
1 ATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGCA
92138318 ATCTTAAATCAGCTAAC
1 ATCTTAAATCAGCTAAC
92138335 CCTTATAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (37 bp):
ATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGCA
Found at i:92143717 original size:91 final size:91
Alignment explanation
Indices: 92143599--92144008 Score: 291
Period size: 91 Copynumber: 4.5 Consensus size: 91
92143589 CTTGAAAACT
* * * * *
92143599 TCAATTTACAACATTTAAACACTTCAATTTGCAGCCCTTCAACACTTCAATTTGCAGCACTTTAA
1 TCAATTCACAACATTAAAACAC-TCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAAA
* *
92143664 CA-TCTCAATTAACAACATTTATACTCC
65 CACT-TCAATTAACAACATTTAAACACC
** * *
92143691 TCAATT-ACAGTGA-TAAAACATCTCAATTTCCAGCAAC-TAAACACTTCAATTTGCAGTACTTA
1 TCAATTCACA-ACATTAAAACA-CTCAATTTGCAGC-ACTTAAACACTTCAATTTGCAGCACTTA
* *
92143753 AACACTTCAATTTACAACATTTAAACACT
63 AACACTTCAATTAACAACATTTAAACACC
* * ** *
92143782 TCAATTCACAACATTCAAACACTCCAATTTGCAGCACTTTAACACTTCAATTTATAGCATTTAAA
1 TCAATTCACAACATTAAAACACT-CAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAAA
** * *
92143847 CACTTCAATTTGC-TCACTTT-AACATC
65 CACTTCAATTAACAACA-TTTAAACACC
* * * * * * *
92143873 TCAATTAACAACATTTATACACCTCAA-TTACAGCGA-TAAAACA-TCTCAAATTCCAGCAAC-T
1 TCAATTCACAACATTAAAACA-CTCAATTTGCAGC-ACTTAAACACT-TCAATTTGCAGC-ACTT
** * * *
92143934 AAACACTTCAATTTGCAATACTTAAAACACT
62 AAACACTTCAATTAACAACA-TTTAAACACC
* * * *
92143965 TCAATTTACAACATTTAAACACTTCAATTTACAGCATTTAAACA
1 TCAATTCACAACATTAAAACAC-TCAATTTGCAGCACTTAAACA
92144009 GCAGCAACCA
Statistics
Matches: 257, Mismatches: 43, Indels: 35
0.77 0.13 0.10
Matches are distributed among these distances:
89 1 0.00
90 37 0.14
91 110 0.43
92 96 0.37
93 13 0.05
ACGTcount: A:0.39, C:0.25, G:0.04, T:0.32
Consensus pattern (91 bp):
TCAATTCACAACATTAAAACACTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAAAC
ACTTCAATTAACAACATTTAAACACC
Found at i:92143878 original size:160 final size:158
Alignment explanation
Indices: 92143556--92143856 Score: 419
Period size: 160 Copynumber: 1.9 Consensus size: 158
92143546 AGATAAACTA
92143556 AATTTCAGCAACTAAACAATTCAATTTGCAGTACTTGAAAACTTCAATTTACAACATTTAAACAC
1 AATTTCAGCAACTAAACAATTCAATTTGCAGTACTTGAAAACTTCAATTTACAACATTTAAACAC
** * * * *
92143621 TTCAATTTGCAGCCCTTCAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTAT
66 TTCAATTCACAGACATTCAACACTCCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTAA
* *
92143686 ACTCCTCAATTACAGTGATAAAACATCTC
131 ACACCTCAATTACA-TCATAAAACATCTC
*
92143715 AATTTCCAGCAACTAAACACTTCAATTTGCAGTACTT-AAACACTTCAATTTACAACATTTAAAC
1 AATTT-CAGCAACTAAACAATTCAATTTGCAGTACTTGAAA-ACTTCAATTTACAACATTTAAAC
* * *
92143779 ACTTCAATTCACA-ACATTCAAACACTCCAATTTGCAGCACTTTAACA-CTTCAATTTATAGCAT
64 ACTTCAATTCACAGACATTC-AACACTCCAATTTGCAGCACTTTAACATC-TCAATTAACAACAT
*
92143842 TTAAACACTTCAATT
127 TTAAACACCTCAATT
92143857 TGCTCACTTT
Statistics
Matches: 126, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
159 13 0.10
160 113 0.90
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.32
Consensus pattern (158 bp):
AATTTCAGCAACTAAACAATTCAATTTGCAGTACTTGAAAACTTCAATTTACAACATTTAAACAC
TTCAATTCACAGACATTCAACACTCCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTAA
ACACCTCAATTACATCATAAAACATCTC
Found at i:92144006 original size:23 final size:23
Alignment explanation
Indices: 92143568--92144008 Score: 278
Period size: 23 Copynumber: 19.3 Consensus size: 23
92143558 TTTCAGCAAC
* * *
92143568 TAAACAATTCAATTTGCAGTACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
92143592 GAAA-ACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
* **
92143614 TAAACACTTCAATTTGCAGCCCT
1 TAAACACTTCAATTTACAGCATT
* *
92143637 TCAACACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
92143661 T-AACA-TCTCAATTAACAACATT
1 TAAACACT-TCAATTTACAGCATT
* * * *
92143683 TATACTCCTCAA-TTACAGTGA-T
1 TAAACACTTCAATTTACAG-CATT
* * **
92143705 AAAACA-TCTCAATTTCCAGCAAC
1 TAAACACT-TCAATTTACAGCATT
* * *
92143728 TAAACACTTCAATTTGCAGTACT
1 TAAACACTTCAATTTACAGCATT
*
92143751 TAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
* *
92143774 TAAACACTTCAATTCACAACATT
1 TAAACACTTCAATTTACAGCATT
* * *
92143797 CAAACACTCCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCA-TT
*
92143821 T-AACACTTCAATTTATAGCATT
1 TAAACACTTCAATTTACAGCATT
* *
92143843 TAAACACTTCAATTTGC-TCACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
92143866 T-AACA-TCTCAATTAACAACATT
1 TAAACACT-TCAATTTACAGCATT
* *
92143888 TATACACCTCAA-TTACAGCGA-T
1 TAAACACTTCAATTTACAGC-ATT
* * * **
92143910 AAAACA-TCTCAAATTCCAGCAAC
1 TAAACACT-TCAATTTACAGCATT
* **
92143933 TAAACACTTCAATTTGCAATACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
92143957 AAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
92143980 TAAACACTTCAATTTACAGCATT
1 TAAACACTTCAATTTACAGCATT
92144003 TAAACA
1 TAAACA
92144009 GCAGCAACCA
Statistics
Matches: 319, Mismatches: 75, Indels: 47
0.72 0.17 0.11
Matches are distributed among these distances:
21 1 0.00
22 56 0.18
23 235 0.74
24 27 0.08
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (23 bp):
TAAACACTTCAATTTACAGCATT
Found at i:92147194 original size:15 final size:15
Alignment explanation
Indices: 92147174--92147239 Score: 100
Period size: 15 Copynumber: 4.5 Consensus size: 15
92147164 GGACTAAAAT
92147174 CATAAATATTAATTA
1 CATAAATATTAATTA
92147189 CATAAATATTAATTA
1 CATAAATATTAATTA
*
92147204 CA-AACT-TATAATTA
1 CATAAATAT-TAATTA
92147218 CATAAATATTAATTA
1 CATAAATATTAATTA
92147233 CATAAAT
1 CATAAAT
92147240 GGAATTAACA
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
13 1 0.02
14 11 0.24
15 33 0.72
16 1 0.02
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (15 bp):
CATAAATATTAATTA
Found at i:92147781 original size:13 final size:13
Alignment explanation
Indices: 92147708--92147781 Score: 58
Period size: 13 Copynumber: 5.7 Consensus size: 13
92147698 CTCAAAATTT
*
92147708 TCAAAAGCACCTC
1 TCAAAAGCACTTC
*
92147721 TTAAAAGCACTTC
1 TCAAAAGCACTTC
* *
92147734 TAAAAAGCACTTT
1 TCAAAAGCACTTC
* * *
92147747 TCCACAGCACATC
1 TCAAAAGCACTTC
* *
92147760 TCAAGAGCACTTT
1 TCAAAAGCACTTC
*
92147773 TTAAAAGCA
1 TCAAAAGCA
92147782 ATGAAAAACT
Statistics
Matches: 46, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
13 46 1.00
ACGTcount: A:0.39, C:0.27, G:0.09, T:0.24
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:92147781 original size:26 final size:26
Alignment explanation
Indices: 92147710--92147781 Score: 72
Period size: 26 Copynumber: 2.8 Consensus size: 26
92147700 CAAAATTTTC
* * *
92147710 AAAAGCACCTCTTAAAAGCACTTCTA
1 AAAAGCACTTTTTAAAAGCACATCTA
** * *
92147736 AAAAGCACTTTTCCACAGCACATCTC
1 AAAAGCACTTTTTAAAAGCACATCTA
*
92147762 AAGAGCACTTTTTAAAAGCA
1 AAAAGCACTTTTTAAAAGCA
92147782 ATGAAAAACT
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.40, C:0.26, G:0.10, T:0.24
Consensus pattern (26 bp):
AAAAGCACTTTTTAAAAGCACATCTA
Found at i:92149136 original size:19 final size:19
Alignment explanation
Indices: 92149108--92149147 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
92149098 GGAAAAAAAA
92149108 TTAGGGATTTGGGGAAATT
1 TTAGGGATTTGGGGAAATT
*
92149127 TTAGGTATTTGGGGAAATT
1 TTAGGGATTTGGGGAAATT
92149146 TT
1 TT
92149148 TTAGGGGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.33, T:0.42
Consensus pattern (19 bp):
TTAGGGATTTGGGGAAATT
Found at i:92150009 original size:14 final size:14
Alignment explanation
Indices: 92149986--92150039 Score: 63
Period size: 14 Copynumber: 3.7 Consensus size: 14
92149976 CTCAAACACC
92149986 AACCATTAAACCATA
1 AACCA-TAAACCATA
92150001 AACCATAAACCATA
1 AACCATAAACCATA
* *
92150015 ATCCCTAAACCTATA
1 AACCATAAACC-ATA
*
92150030 ATCCATAAAC
1 AACCATAAAC
92150040 TTTAAAATAG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
14 18 0.51
15 17 0.49
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (14 bp):
AACCATAAACCATA
Found at i:92150032 original size:15 final size:14
Alignment explanation
Indices: 92149992--92150039 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
92149982 CACCAACCAT
*
92149992 TAAACCATAAACCA
1 TAAACCATAATCCA
*
92150006 TAAACCATAATCCC
1 TAAACCATAATCCA
92150020 TAAACCTATAATCCA
1 TAAACC-ATAATCCA
92150035 TAAAC
1 TAAAC
92150040 TTTAAAATAG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
14 18 0.60
15 12 0.40
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAACCATAATCCA
Found at i:92150683 original size:40 final size:40
Alignment explanation
Indices: 92150520--92150683 Score: 125
Period size: 40 Copynumber: 4.2 Consensus size: 40
92150510 TTTCAACGGT
* * * * * * *
92150520 GTTTTTCAAAAAGCGCCACTAATGGTCGACCTATAGTGGT
1 GTTTTTCAAAAAGCACCGCTAATGCTCAATCTATAGCGGC
* *** * *
92150560 GTTTTTTAAAAAGTGTCGTTAAT-CTCGATCTATAGCGGC
1 GTTTTTCAAAAAGCACCGCTAATGCTCAATCTATAGCGGC
*** * **
92150599 G-TTTTCAAAAAGCGTTGCTAATGCTCTATCTATAGCATC
1 GTTTTTCAAAAAGCACCGCTAATGCTCAATCTATAGCGGC
* *
92150638 ATTTTTCAAAAAGCACCGCTAATGCTCAATTTATAGCGGC
1 GTTTTTCAAAAAGCACCGCTAATGCTCAATCTATAGCGGC
92150678 GTTTTT
1 GTTTTT
92150684 TATCCAAACG
Statistics
Matches: 97, Mismatches: 25, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
38 17 0.18
39 26 0.27
40 54 0.56
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (40 bp):
GTTTTTCAAAAAGCACCGCTAATGCTCAATCTATAGCGGC
Found at i:92152216 original size:12 final size:12
Alignment explanation
Indices: 92152199--92152223 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92152189 TTCAAGTTAT
92152199 AATATATATATA
1 AATATATATATA
92152211 AATATATATATA
1 AATATATATATA
92152223 A
1 A
92152224 TTAAAAGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AATATATATATA
Found at i:92153739 original size:19 final size:20
Alignment explanation
Indices: 92153707--92153754 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 20
92153697 TTAACTAAGT
**
92153707 TTAATTAATTTAATCATAC-
1 TTAATTAACCTAATCATACA
* *
92153726 TTAATTAACCTAATCCTTCA
1 TTAATTAACCTAATCATACA
92153746 TTAATTAAC
1 TTAATTAAC
92153755 ATATAAGTGG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 15 0.62
20 9 0.38
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.44
Consensus pattern (20 bp):
TTAATTAACCTAATCATACA
Found at i:92162331 original size:5 final size:6
Alignment explanation
Indices: 92162314--92162347 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
92162304 GCTATTGGCC
92162314 TCTTTT TCTTTT TCTTTT TCTTATT T-TTTT TCTT
1 TCTTTT TCTTTT TCTTTT TCTT-TT TCTTTT TCTT
92162348 GAAGTTCTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 3 0.12
6 20 0.77
7 3 0.12
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (6 bp):
TCTTTT
Found at i:92164755 original size:26 final size:27
Alignment explanation
Indices: 92164720--92164771 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
92164710 TATTATTACT
*
92164720 TTTTTTTAAAATAAT-AAAATATACAA
1 TTTTATTAAAATAATAAAAATATACAA
92164746 TTTTATTAAAATAATAAAAATATACA
1 TTTTATTAAAATAATAAAAATATACA
92164772 TTTAAATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 14 0.58
27 10 0.42
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (27 bp):
TTTTATTAAAATAATAAAAATATACAA
Found at i:92164786 original size:27 final size:26
Alignment explanation
Indices: 92164726--92164779 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
92164716 TACTTTTTTT
* *
92164726 TAAAATAATAAAATATACAATTTTAT
1 TAAAATAATAAAATATACAATTTAAA
92164752 TAAAATAATAAAAATATAC-ATTTAAA
1 TAAAATAAT-AAAATATACAATTTAAA
92164778 TA
1 TA
92164780 TATATAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (26 bp):
TAAAATAATAAAATATACAATTTAAA
Found at i:92164826 original size:34 final size:33
Alignment explanation
Indices: 92164773--92164842 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 33
92164763 AAATATACAT
92164773 TTAAATATATATAAATATATAAATAACAATATA
1 TTAAATATATATAAATATATAAATAACAATATA
* **
92164806 TTAAAT-TATATAATATTATATTAATATTAATATA
1 TTAAATATATATAA-A-TATATAAATAACAATATA
92164840 TTA
1 TTA
92164843 TTAAAATGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 7 0.22
33 7 0.22
34 18 0.56
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (33 bp):
TTAAATATATATAAATATATAAATAACAATATA
Found at i:92164987 original size:21 final size:20
Alignment explanation
Indices: 92164962--92165003 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
92164952 AAATAATAAA
*
92164962 ATATATTTTTTATTAATATTT
1 ATATATTTTATATTAA-ATTT
92164983 ATATATTTTATATTAAATTT
1 ATATATTTTATATTAAATTT
92165003 A
1 A
92165004 AATAAAAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
ATATATTTTATATTAAATTT
Found at i:92173851 original size:18 final size:18
Alignment explanation
Indices: 92173824--92173860 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
92173814 TTGATTTTCG
*
92173824 AATTCAAATAAATCGAAT
1 AATTCAAATAAACCGAAT
*
92173842 AATTCGAATAAACCGAAT
1 AATTCAAATAAACCGAAT
92173860 A
1 A
92173861 CCAAACTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.14, G:0.08, T:0.24
Consensus pattern (18 bp):
AATTCAAATAAACCGAAT
Found at i:92173933 original size:19 final size:21
Alignment explanation
Indices: 92173896--92173939 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
92173886 ACCCCAAACT
*
92173896 CCCAAACCTCTTTACTTTCCA
1 CCCAAAACTCTTTACTTTCCA
*
92173917 CCCAAAACT-TTTA-TTTCCT
1 CCCAAAACTCTTTACTTTCCA
92173936 CCCA
1 CCCA
92173940 CTTTCCCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 9 0.43
20 4 0.19
21 8 0.38
ACGTcount: A:0.25, C:0.41, G:0.00, T:0.34
Consensus pattern (21 bp):
CCCAAAACTCTTTACTTTCCA
Found at i:92175993 original size:18 final size:18
Alignment explanation
Indices: 92175968--92176018 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
92175958 AAATGACAAA
*
92175968 AAATGAGAAATGAATATG
1 AAATGAGAAATGAATACG
*
92175986 AGATGAGAAATGAAATACG
1 AAATGAGAAATG-AATACG
92176005 AAATGATGAAATGA
1 AAATGA-GAAATGA
92176019 GATGTGAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 11 0.39
19 11 0.39
20 6 0.21
ACGTcount: A:0.55, C:0.02, G:0.24, T:0.20
Consensus pattern (18 bp):
AAATGAGAAATGAATACG
Found at i:92178855 original size:18 final size:19
Alignment explanation
Indices: 92178832--92178901 Score: 74
Period size: 18 Copynumber: 3.7 Consensus size: 19
92178822 ACATTAGGCA
92178832 TAATTTTA-GTAAAATGTG
1 TAATTTTATGTAAAATGTG
*
92178850 TAATTTTATGTAATTAA-GTAT
1 TAATTTTATGTAA--AATGT-G
*
92178871 TAAATTTA-GTAAAATGTG
1 TAATTTTATGTAAAATGTG
92178889 TAATTTTATGTAA
1 TAATTTTATGTAA
92178902 TTAAGTATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
18 17 0.40
19 10 0.24
20 6 0.14
21 9 0.21
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (19 bp):
TAATTTTATGTAAAATGTG
Found at i:92178888 original size:39 final size:39
Alignment explanation
Indices: 92178836--92178917 Score: 155
Period size: 39 Copynumber: 2.1 Consensus size: 39
92178826 TAGGCATAAT
92178836 TTTAGTAAAATGTGTAATTTTATGTAATTAAGTATTAAA
1 TTTAGTAAAATGTGTAATTTTATGTAATTAAGTATTAAA
*
92178875 TTTAGTAAAATGTGTAATTTTATGTAATTAAGTATTAAT
1 TTTAGTAAAATGTGTAATTTTATGTAATTAAGTATTAAA
92178914 TTTA
1 TTTA
92178918 CATAATTTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.49
Consensus pattern (39 bp):
TTTAGTAAAATGTGTAATTTTATGTAATTAAGTATTAAA
Found at i:92178913 original size:21 final size:21
Alignment explanation
Indices: 92178850--92178917 Score: 81
Period size: 21 Copynumber: 3.4 Consensus size: 21
92178840 GTAAAATGTG
92178850 TAATTTTATGTAATTAAGTAT
1 TAATTTTATGTAATTAAGTAT
* *
92178871 TAAATTTA-GTAA--AATGT-G
1 TAATTTTATGTAATTAA-GTAT
92178889 TAATTTTATGTAATTAAGTAT
1 TAATTTTATGTAATTAAGTAT
92178910 TAATTTTA
1 TAATTTTA
92178918 CATAATTTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
18 9 0.24
19 6 0.16
20 6 0.16
21 17 0.45
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (21 bp):
TAATTTTATGTAATTAAGTAT
Found at i:92179803 original size:19 final size:19
Alignment explanation
Indices: 92179779--92179818 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
92179769 AAAATCATTC
92179779 ATGTTATTCATGCATTAAA
1 ATGTTATTCATGCATTAAA
92179798 ATGTTATTCATGCATTAAA
1 ATGTTATTCATGCATTAAA
92179817 AT
1 AT
92179819 ATGTTCGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (19 bp):
ATGTTATTCATGCATTAAA
Found at i:92182812 original size:44 final size:44
Alignment explanation
Indices: 92182749--92182839 Score: 146
Period size: 44 Copynumber: 2.1 Consensus size: 44
92182739 AACTCTATTT
92182749 TTAGTTTCCCACTTAAACTCTAATTAGTATAAGTTATTTTAATA
1 TTAGTTTCCCACTTAAACTCTAATTAGTATAAGTTATTTTAATA
* * * *
92182793 TTAGTTTCCCACTTAAACTCTGATTATTTTAGGTTATTTTAATA
1 TTAGTTTCCCACTTAAACTCTAATTAGTATAAGTTATTTTAATA
92182837 TTA
1 TTA
92182840 TTTGACCTAC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.31, C:0.13, G:0.08, T:0.48
Consensus pattern (44 bp):
TTAGTTTCCCACTTAAACTCTAATTAGTATAAGTTATTTTAATA
Found at i:92184474 original size:43 final size:42
Alignment explanation
Indices: 92184413--92184558 Score: 134
Period size: 43 Copynumber: 3.4 Consensus size: 42
92184403 ACCCGAGCTC
* * * *
92184413 GTTGAGCGGTCCGAGTTCGTGATATGTATGAG-ATTTCGAACTT
1 GTTGAGTGGTCCGAGTTCGTGAGATATATG-GCA-TCCGAACTT
* *
92184456 GTTGAGTGGTCCAAGTTCGTGAGATATATGGCATCCGAGCTT
1 GTTGAGTGGTCCGAGTTCGTGAGATATATGGCATCCGAACTT
* * * ** *
92184498 GTTGAGTGGTCCGAGTTCATTATG-GATGCGAGCATCCGAACTC
1 GTTGAGTGGTCCGAGTTCGTGA-GATATATG-GCATCCGAACTT
92184541 GTTGAGTGGTCCGAGTTC
1 GTTGAGTGGTCCGAGTTC
92184559 ATTGTGGATG
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
42 30 0.35
43 56 0.65
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.32
Consensus pattern (42 bp):
GTTGAGTGGTCCGAGTTCGTGAGATATATGGCATCCGAACTT
Found at i:92184508 original size:42 final size:43
Alignment explanation
Indices: 92184405--92184515 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 43
92184395 ATTAAGTAAC
* * * *
92184405 CCGAGCTCGTTGAGCGGTCCGAGTTCGTGATATGTATGAGATT
1 CCGAGCTTGTTGAGTGGTCCGAGTTCGTGAGATATATGAGATT
* * *
92184448 TCGAACTTGTTGAGTGGTCCAAGTTCGTGAGATATATG-GCA-T
1 CCGAGCTTGTTGAGTGGTCCGAGTTCGTGAGATATATGAG-ATT
92184490 CCGAGCTTGTTGAGTGGTCCGAGTTC
1 CCGAGCTTGTTGAGTGGTCCGAGTTC
92184516 ATTATGGATG
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
42 25 0.44
43 32 0.56
ACGTcount: A:0.19, C:0.18, G:0.32, T:0.32
Consensus pattern (43 bp):
CCGAGCTTGTTGAGTGGTCCGAGTTCGTGAGATATATGAGATT
Found at i:92184559 original size:43 final size:43
Alignment explanation
Indices: 92184486--92184571 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
92184476 GAGATATATG
* *
92184486 GCATCCGAGCTTGTTGAGTGGTCCGAGTTCATTATGGATGCGA
1 GCATCCGAACTCGTTGAGTGGTCCGAGTTCATTATGGATGCGA
*
92184529 GCATCCGAACTCGTTGAGTGGTCCGAGTTCATTGTGGATGCGA
1 GCATCCGAACTCGTTGAGTGGTCCGAGTTCATTATGGATGCGA
92184572 TGCCTGTGAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.19, C:0.20, G:0.33, T:0.29
Consensus pattern (43 bp):
GCATCCGAACTCGTTGAGTGGTCCGAGTTCATTATGGATGCGA
Found at i:92189109 original size:17 final size:16
Alignment explanation
Indices: 92189062--92189109 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
92189052 GGCCTAAAAT
*
92189062 ATTTGAATAGATTATTG
1 ATTTG-ATAGATTATTA
*
92189079 ATTTGATAAAATTAGTTA
1 ATTTGAT-AGATTA-TTA
92189097 ATTTGATAGATTA
1 ATTTGATAGATTA
92189110 ACTAATTAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 2 0.08
17 15 0.58
18 9 0.35
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.46
Consensus pattern (16 bp):
ATTTGATAGATTATTA
Found at i:92190116 original size:13 final size:13
Alignment explanation
Indices: 92190098--92190143 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
92190088 TTCTTTCGAA
92190098 TCTTTTTTTTCTT
1 TCTTTTTTTTCTT
*
92190111 TCTTTTTTTTGTGT
1 TCTTTTTTTTCT-T
*
92190125 TGTTTTTTTTTCTT
1 T-CTTTTTTTTCTT
92190139 TCTTT
1 TCTTT
92190144 ATATATACAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
13 14 0.52
14 4 0.15
15 9 0.33
ACGTcount: A:0.00, C:0.11, G:0.07, T:0.83
Consensus pattern (13 bp):
TCTTTTTTTTCTT
Found at i:92190207 original size:17 final size:17
Alignment explanation
Indices: 92190185--92190217 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
92190175 CAGCCACCGT
*
92190185 GGGCGGTGGCCGACGAC
1 GGGCGGCGGCCGACGAC
92190202 GGGCGGCGGCCGACGA
1 GGGCGGCGGCCGACGA
92190218 TCGACCGGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.30, G:0.55, T:0.03
Consensus pattern (17 bp):
GGGCGGCGGCCGACGAC
Found at i:92190521 original size:22 final size:23
Alignment explanation
Indices: 92190476--92190531 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
92190466 TATATTAGTG
* **
92190476 TATATTTTATGTACATATGTATA
1 TATATATTATGTACATATCAATA
92190499 TATATATT-TGTACATATCAATA
1 TATATATTATGTACATATCAATA
*
92190521 TTTTATATTAT
1 -TATATATTAT
92190532 TGTTGTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 12 0.44
23 14 0.52
24 1 0.04
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (23 bp):
TATATATTATGTACATATCAATA
Found at i:92200778 original size:67 final size:69
Alignment explanation
Indices: 92200607--92200778 Score: 215
Period size: 70 Copynumber: 2.5 Consensus size: 69
92200597 CTTTTCAAGG
* * *
92200607 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTAATTTTTGT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTAATTTATGT
92200672 TTTCA
66 TTT-A
* * * *
92200677 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTTAGTTTATG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTA-TTTTAATTTATG
92200741 -TTT-
65 TTTTA
** *
92200744 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
92200779 TTTAATTTTT
Statistics
Matches: 90, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
67 31 0.34
69 15 0.17
70 44 0.49
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTAATTTATGT
TTTA
Found at i:92200899 original size:72 final size:71
Alignment explanation
Indices: 92200778--92200943 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
92200768 GAGTTAAGCC
** * *
92200778 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
92200842 TGAGGTA
65 TGAGGTA
*
92200849 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
92200914 TGAGGTA
65 TGAGGTA
* *
92200921 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
92200944 ACGTTGTTCA
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:92201471 original size:138 final size:139
Alignment explanation
Indices: 92200876--92201489 Score: 1132
Period size: 137 Copynumber: 4.4 Consensus size: 139
92200866 TTAATTTCAA
92200876 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTG-TTTCAA
92200941 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
65 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
92201006 TC-AAATCAG
130 TCAAAATCAG
92201015 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTTCAATTTCTGTTTTCA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTA-TTTTCAATTTCTG-TTTCA
92201080 ATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTT
64 ATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTT
92201145 TTCAAAATCAG
129 TTCAAAATCAG
92201156 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCT-AGGTA-TTTCAATTTCTGTTTCAAT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTCAAT
*
92201219 TTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTTT
66 TTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
92201284 CAAAATCAG
131 CAAAATCAG
92201293 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTCAAT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTCAAT
92201358 TTA-GTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTAC-TTTT
66 TTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
92201421 CAAAATCAG
131 CAAAATCAG
92201430 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACATGCTGAGGTATTTTCAATTTCTGT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC--GCTGAGGTATTTTCAATTTCTGT
92201490 CTTTCAAAAA
Statistics
Matches: 467, Mismatches: 2, Indels: 13
0.97 0.00 0.03
Matches are distributed among these distances:
136 6 0.01
137 161 0.34
138 95 0.20
139 67 0.14
140 92 0.20
141 46 0.10
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (139 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTCAAT
TTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
CAAAATCAG
Found at i:92201739 original size:72 final size:71
Alignment explanation
Indices: 92201622--92201774 Score: 200
Period size: 72 Copynumber: 2.1 Consensus size: 71
92201612 TTTCAATTTC
* *
92201622 TGAGCCTCAAGACATGCTGAGGTATTTCATTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGA
1 TGAGCCTCAAGACACGCTGAGGTATTTCATTCTGTTTGTCAAAAAAATCAACTCATA-TGCGAGA
*
92201687 GGTGAGT
65 GGCGAGT
* * ** *
92201694 TGAGCCTTAGGACACGCTGAGGTATTTCAATTTCTG-TTGTCAAAAAAATCAACTTGTATGTGAG
1 TGAGCCTCAAGACACGCTGAGGTATTTC-A-TTCTGTTTGTCAAAAAAATCAACTCATATGCGAG
92201758 AGGCGAGT
64 AGGCGAGT
92201766 TGAGCCTCA
1 TGAGCCTCA
92201775 GGTCACCGCC
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
72 45 0.64
73 20 0.29
74 5 0.07
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (71 bp):
TGAGCCTCAAGACACGCTGAGGTATTTCATTCTGTTTGTCAAAAAAATCAACTCATATGCGAGAG
GCGAGT
Found at i:92201791 original size:72 final size:72
Alignment explanation
Indices: 92201622--92201802 Score: 199
Period size: 72 Copynumber: 2.5 Consensus size: 72
92201612 TTTCAATTTC
* * * *
92201622 TGAGCCTCAAGACATGCTGAGGTATTTCATTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGA
1 TGAGCCTCAGGACACGCCGAGGTATTTCATTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGA
*
92201687 GGTGAGT
66 GGCGAGT
* * ** *
92201694 TGAGCCTTAGGACACGCTGAGGTATTTCAATTTCTG-TTGTCAAAAAAATCAACTTGTA-TGTGA
1 TGAGCCTCAGGACACGCCGAGGTATTTC-A-TTCTGTTTGTCAAAAAAATCAACTCATATTGCGA
92201757 GAGGCGAGT
64 GAGGCGAGT
*
92201766 TGAGCCTCAGGTCACCGCCGA-GTATTTTCATTC-GTTT
1 TGAGCCTCAGGACA-CGCCGAGGTA-TTTCATTCTGTTT
92201803 TTCATTCTGC
Statistics
Matches: 93, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
70 1 0.01
71 5 0.05
72 53 0.57
73 29 0.31
74 5 0.05
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (72 bp):
TGAGCCTCAGGACACGCCGAGGTATTTCATTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGA
GGCGAGT
Found at i:92212684 original size:30 final size:30
Alignment explanation
Indices: 92212648--92212762 Score: 144
Period size: 30 Copynumber: 3.8 Consensus size: 30
92212638 ACTTTTCTCA
*
92212648 ACTAGCCACACCTT-TTCCACCACCAACTCC
1 ACTAGCCACA-CTTGCTCCACCACCAACTCC
*
92212678 ACTAGCCACACCTT-CTCCACCACCAAATCC
1 ACTAGCCACA-CTTGCTCCACCACCAACTCC
** *
92212708 ACTAGCCACACTTGCTCCATTACCTACTCC
1 ACTAGCCACACTTGCTCCACCACCAACTCC
*
92212738 ACTAACCACACTTGCTCCACCACCA
1 ACTAGCCACACTTGCTCCACCACCA
92212763 CTTGTACCTA
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 3 0.04
30 71 0.96
ACGTcount: A:0.28, C:0.48, G:0.04, T:0.20
Consensus pattern (30 bp):
ACTAGCCACACTTGCTCCACCACCAACTCC
Found at i:92213381 original size:25 final size:25
Alignment explanation
Indices: 92213353--92213496 Score: 87
Period size: 25 Copynumber: 5.6 Consensus size: 25
92213343 ATATTACGTA
* *
92213353 TATATATATTTTATACTATTTTATT
1 TATATATATTTAATACTATATTATT
* *
92213378 TATATATCTTTAATATTATATTATT
1 TATATATATTTAATACTATATTATT
* * *
92213403 TATATATATATT-TTTCTACATGTTATCT
1 TATATATAT-TTAATACT--ATATTAT-T
*
92213431 TATGTATATATCTT-A-ACTATATTATG
1 TA--TATATAT-TTAATACTATATTATT
* * *
92213457 TATATATTTTTAACACTATATTATG
1 TATATATATTTAATACTATATTATT
* *
92213482 TACATATTTTTAATA
1 TATATATATTTAATA
92213497 TTATCACGTA
Statistics
Matches: 94, Mismatches: 17, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
23 2 0.02
24 7 0.07
25 55 0.59
26 4 0.04
27 12 0.13
28 3 0.03
29 2 0.02
30 9 0.10
ACGTcount: A:0.34, C:0.07, G:0.03, T:0.56
Consensus pattern (25 bp):
TATATATATTTAATACTATATTATT
Found at i:92213678 original size:7 final size:8
Alignment explanation
Indices: 92213643--92213694 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
92213633 TAATTATTAT
*
92213643 TATTCTAA
1 TATTTTAA
*
92213651 TATTTTGA
1 TATTTTAA
92213659 TATTTTAA
1 TATTTTAA
92213667 TATTTT-A
1 TATTTTAA
92213674 TATTTTATA
1 TATTTTA-A
*
92213683 TATTTTAT
1 TATTTTAA
92213691 TATT
1 TATT
92213695 CACATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:92213685 original size:16 final size:15
Alignment explanation
Indices: 92213643--92213690 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
92213633 TAATTATTAT
*
92213643 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
92213659 TATTTTAATATTTTA
1 TATTTTAATATTTTA
92213674 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
92213690 T
1 T
92213691 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:92223608 original size:71 final size:69
Alignment explanation
Indices: 92223510--92223678 Score: 223
Period size: 71 Copynumber: 2.4 Consensus size: 69
92223500 TTTTAAAGGG
* *
92223510 AAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
92223574 GTTTT
65 GTTTT
** * *
92223579 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
92223644 TGTTTT
64 TGTTTT
** *
92223650 AAATTGACTCATATTGCGAGAGGTGAGTT
1 AAATCAACTCATATTGCGAGAAGTGAGTT
92223679 AAGTCTTTTA
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
69 26 0.30
71 60 0.68
72 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.35
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTT
Found at i:92223805 original size:72 final size:71
Alignment explanation
Indices: 92223684--92223849 Score: 217
Period size: 72 Copynumber: 2.3 Consensus size: 71
92223674 GAGTTAAGTC
** * * *
92223684 TTTT-AATTTTTGTTTTTCAAAATCAACTTATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACGC
*
92223748 TTAGGTA
65 TGAGGTA
* *
92223755 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTCATGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACGC
92223820 TGAGGTA
65 TGAGGTA
* *
92223827 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
92223850 ACGTTGTTCA
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
71 12 0.14
72 67 0.81
73 4 0.05
ACGTcount: A:0.23, C:0.14, G:0.20, T:0.43
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:92223953 original size:140 final size:140
Alignment explanation
Indices: 92223782--92224409 Score: 1132
Period size: 140 Copynumber: 4.5 Consensus size: 140
92223772 TTAATTTCAA
* *
92223782 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTCATGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
92223847 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
92223912 TCAAAATCAG
131 TCAAAATCAG
*
92223922 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTTAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
92223987 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
92224052 TCAAAATCAG
131 TCAAAATCAG
*
92224062 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* * *
92224127 TTTATGTTGTTCAAGAATCAACTCATATTGTGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
92224192 TCAAAATCAG
131 TCAAAATCAG
92224202 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
92224267 TTTACGTTGTTCAAGAATCAACTCATATTGCAAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
92224332 TCAAAATCAG
131 TCAAAATCAG
92224342 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
92224406 TCAA
62 TCAA
92224410 AAAAAAAATT
Statistics
Matches: 471, Mismatches: 13, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
139 2 0.00
140 440 0.93
142 23 0.05
143 6 0.01
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:92224125 original size:13 final size:13
Alignment explanation
Indices: 92224107--92224140 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
92224097 CGCTAAGGTA
*
92224107 TTTTCAATTTCTG
1 TTTTCAATTTATG
92224120 TTTTCAATTTATG
1 TTTTCAATTTATG
92224133 TTGTTCAA
1 TT-TTCAA
92224141 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:92224493 original size:49 final size:49
Alignment explanation
Indices: 92224436--92224531 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
92224426 ATATTGCGAG
*
92224436 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
92224485 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
92224532 TTCAAAATTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:92224736 original size:75 final size:75
Alignment explanation
Indices: 92224488--92225435 Score: 678
Period size: 77 Copynumber: 12.2 Consensus size: 75
92224478 CTGTTCAAAA
* * *
92224488 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTCATA
1 TGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
**
92224550 TTGCGAGAAA
66 TTGCGAGAGG
** * * *
92224560 TTTGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTTTGTTTTTCAAAAAAAAATCAACTCA
1 TGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTC--AAAAAAATCAACTCA
* **
92224625 TATTGTGAGAAA
64 TATTGCGAGAGG
* *
92224637 TGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
1 TGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
92224702 TTGCGAGAGG
66 TTGCGAGAGG
* * * **
92224712 TGAGTTGAGCCTTAGGACACGCTGAGGTAATTTCAATTTCTG-TTGTC-AAAAAATCAACTTGTA
1 TGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
*
92224775 TTGTGAGAGG
66 TTGCGAGAGG
* *
92224785 CGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT-TCGTTTTTCAATTTCTGCCTTTC
1 TGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATTTCT-GTTTTTCAA------------
* * * *
92224849 AAAAA-AAATTCA-ACT-C-ATATTGCG
51 AAAAATCAACTCATATTGCGAGA--G-G
* * * * * * * * *
92224873 AGAGGTGAG-TTGA-GCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTC-AAAAAAT
1 TGAGTTGAGCCTCAGGAC---ACGC------TGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAT
92224935 CAACTCATATTGCGAGAGG
57 CAACTCATATTGCGAGAGG
* * * * *
92224954 TGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTTCAATTTATATTTTTC-AAAAAATCAAC
1 TGAGTTGAGCCTCAG--GACACGCTGAGGTA---TTTTCAATTTCTGTTTTTCAAAAAAATCAAC
* * *
92225018 TCACATTGTGAGATG
61 TCATATTGCGAGAGG
* * **
92225033 TGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCAAAATCTGTTTTTCAGATTCTGTTTTCA
1 TGAGTTGAGCCTCAGG--ACACGCT-GAGGTATTTTCAATTTCTGTTTTTCA-A----------A
*
92225097 AAAATCAACTCATATTGCGAGAAG
52 AAAATCAACTCATATTGCGAGAGG
* * * *
92225121 TGAGTTGAGCCT-TGGCTCACATGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTC
1 TGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
92225185 ATATTGCGAGAGG
63 ATATTGCGAGAGG
* * * *
92225198 TGAGTTGAGCCTCGGGACACACTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTCATA
1 TGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
**
92225260 TTGCGAGAAA
66 TTGCGAGAGG
* * *
92225270 TGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG-TTTTCAAAAAAATCAACTTATA
1 TGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
92225334 TTGCGAGAGG
66 TTGCGAGAGG
* *
92225344 TGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTC
1 TGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
92225408 ATATTGCGAGAGG
63 ATATTGCGAGAGG
*
92225421 TGAGTTGAGCTTCAG
1 TGAGTTGAGCCTCAG
92225436 ATCACACACT
Statistics
Matches: 702, Mismatches: 103, Indels: 136
0.75 0.11 0.14
Matches are distributed among these distances:
72 101 0.14
73 43 0.06
74 43 0.06
75 106 0.15
76 49 0.07
77 147 0.21
78 5 0.01
79 61 0.09
80 5 0.01
81 13 0.02
82 8 0.01
83 1 0.00
84 3 0.00
85 3 0.00
86 1 0.00
87 10 0.01
88 74 0.11
89 6 0.01
92 1 0.00
93 21 0.03
94 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (75 bp):
TGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
TTGCGAGAGG
Found at i:92224928 original size:93 final size:92
Alignment explanation
Indices: 92224759--92224929 Score: 220
Period size: 93 Copynumber: 1.8 Consensus size: 92
92224749 TTCTGTTGTC
** * *
92224759 AAAAAATCAACTTGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAAT
*
92224824 TTTCGTTTTTCAATTTCTGCCTTTCAA
66 TTTCGTCTTTCAATTTCTGCCTTTCAA
* * * *
92224851 AAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAA-TCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCA
92224915 A-TTTCTGTCTTTCAA
64 ATTTTC-GTCTTTCAA
92224930 AAAATCAACT
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
92 12 0.18
93 55 0.82
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (92 bp):
AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAAT
TTTCGTCTTTCAATTTCTGCCTTTCAA
Found at i:92225139 original size:243 final size:236
Alignment explanation
Indices: 92224612--92225639 Score: 1036
Period size: 223 Copynumber: 4.3 Consensus size: 236
92224602 TTTTTCAAAA
* ** **
92224612 AAAAATCAACTCATATTGTGAGAAATGAGTTGAGCC-T--CAAGACATGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACATGCTGAGGTATTTTCAAT
* * *
92224674 TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-AG-GACACGCTGA
65 TTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGTCACACACTGA
* * ** * * *
92224737 GGTAATTTCAATTTCTGTTGTCAAAAAATCAACTTGTATTGTGAGAGGCGAGTTGAGCCTCAGGT
129 GGTAATTTCAATTTATGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGT
* * *
92224802 CACACGCCGAGGTATTTTC-AATTTTCGTTTTTCAATTTCTGCCTTTC
194 CACACGTCGAGGTATTTTCAAAATCT-GTTTTTCAA--TCTG--TTTC
** *
92224849 AAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTC
1 ---AAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTC
92224914 AATTTCTGTCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACAC
62 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG-TCACACAC
* * * * *
92224978 TGAGGTATTTTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGTGAGATGTGAGTTGAGC
126 TGAGGTA---ATTTCAATTTAT-GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
** *
92225043 CTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAGATTCTGTTTTC
187 CTCAAGTCACACGTCGAGGTATTTTCAAAATCTGTTTTTCA-A-TCTG-TTTC
*
92225096 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTCAATT
* * **
92225161 TTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGACACACTGAGG
66 TCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGTCACACACTGAGG
* * **
92225225 TAATTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--A
131 TAATTTCAATTTATGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCA
* **
92225287 CACGTTGAGGTATTTTCAATTTCTG-TTTTCAA--------
196 CACGTCGAGGTATTTTCAAAATCTGTTTTTCAATCTGTTTC
* * *
92225319 AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTCAATT
*
92225384 TCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGTG
66 TCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG-TCACACACTGAG
* * * * * * * *
92225449 GTATTTTTTTCAATTTAT-ATTGCGAAAGGTAAGTTGAGCTTTTTAATTTCTGCGAGAGGTGAGT
130 GTA---ATTTCAATTTATGTTTTC-AAA---AA-ATCAAC----TCATAT-TGCGAGAGGTGAGT
* * * * **
92225513 TGAGCCTCGAGTCACATGTCGAGGTATTTTGAAAATCTGCTTTTCAAGATAAGTTTC
182 TGAGCCTCAAGTCACACGTCGAGGTATTTTCAAAATCTGTTTTTC-A-ATCTGTTTC
* * *
92225570 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCTATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTCAATT
92225635 TCTGT
66 TCTGT
92225640 TTTTAATGTC
Statistics
Matches: 666, Mismatches: 79, Indels: 75
0.81 0.10 0.09
Matches are distributed among these distances:
223 109 0.16
224 1 0.00
225 12 0.02
227 3 0.00
228 10 0.02
229 2 0.00
232 2 0.00
233 5 0.01
234 6 0.01
235 22 0.03
237 38 0.06
238 27 0.04
239 10 0.02
240 26 0.04
241 36 0.05
242 52 0.08
243 95 0.14
244 56 0.08
247 14 0.02
248 71 0.11
249 5 0.01
251 64 0.10
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (236 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTCAATT
TCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGTCACACACTGAGG
TAATTTCAATTTATGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCA
CACGTCGAGGTATTTTCAAAATCTGTTTTTCAATCTGTTTC
Found at i:92225197 original size:486 final size:469
Alignment explanation
Indices: 92224612--92225639 Score: 1304
Period size: 486 Copynumber: 2.1 Consensus size: 469
92224602 TTTTTCAAAA
* * **
92224612 AAAAATCAACTCATATTGTGAGAAATGAGTTGAGCC-T--CAAGACATGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGC-TCACATGCTGAGGTATTTTCAAT
* * *
92224674 TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCTGAGG
65 TTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGG
** * ** *
92224739 TAATTTCAATTTCTGTTGTCAAAAAATCAACTTGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCA
130 TAATTTCAATTTCTGTTGTC-AAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAG--A
92224804 CACGCCGAGGTATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTCAAAAAAAATTCAACTCATAT
192 CACGCCGAGG-----T--A-------TTTTCAATTTCTG-CTTTC-AAAAAAA-TCAACTCATAT
* *
92224869 TGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTC-AAAAA
240 TGCGAGAGGTGAGTTGAGCCTCGGCTCACACGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAA
92224933 ATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTTCAATTT
305 ATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTTCAATTT
* * * *
92224998 ATATTTTTC-AAA-AA-ATCAAC-TCACA-T-TGTGAGATGTGAGTTGAGCCTCGGGTCACATGT
370 ATA--TTGCGAAAGAAGATCAACTTCA-ATTCTGCGAGAGGTGAGTTGAGCCTCGAGTCACATGT
* **
92225057 CGAGGTATTTTCAAAATCTGTTTTTC-AGATTCTGTTTTC
432 CGAGGTATTTTCAAAATCTGCTTTTCAAGA-TAAG-TTTC
92225096 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTCAATT
* *
92225161 TTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGT
66 TCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGT
* * *
92225226 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
131 AATTTCAATTTCTGTTGTCAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAGACACG
** * *
92225291 TTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT
196 CCGAGGTATTTTCAATTTCTGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* * *
92225356 CGGTTCACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGG
261 CGGCTCACACGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGG
* * *
92225421 TGAGTTGAGCTTCAGATCACACACTGTGGTATTTTTTTCAATTTATATTGCGAAAGGTAAGTTGA
326 TGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTTCAATTTATATTGCGAAA-G-AAGATCA
* * *
92225486 GCTTTTTAATTTCTGCGAGAGGTGAGTTGAGCCTCGAGTCACATGTCGAGGTATTTTGAAAATCT
389 AC--TTCAA-TTCTGCGAGAGGTGAGTTGAGCCTCGAGTCACATGTCGAGGTATTTTCAAAATCT
92225551 GCTTTTCAAGATAAGTTTC
451 GCTTTTCAAGATAAGTTTC
* * * *
92225570 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCTATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTCAATT
92225635 TCTGT
66 TCTGT
92225640 TTTTAATGTC
Statistics
Matches: 483, Mismatches: 45, Indels: 42
0.85 0.08 0.07
Matches are distributed among these distances:
465 3 0.01
466 67 0.14
467 79 0.16
468 4 0.01
469 15 0.03
470 3 0.01
472 1 0.00
473 2 0.00
474 70 0.14
475 56 0.12
476 4 0.01
478 1 0.00
483 9 0.02
484 34 0.07
485 34 0.07
486 100 0.21
487 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (469 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTCAATT
TCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGT
AATTTCAATTTCTGTTGTCAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAGACACG
CCGAGGTATTTTCAATTTCTGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
CGGCTCACACGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGG
TGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTTCAATTTATATTGCGAAAGAAGATCAAC
TTCAATTCTGCGAGAGGTGAGTTGAGCCTCGAGTCACATGTCGAGGTATTTTCAAAATCTGCTTT
TCAAGATAAGTTTC
Found at i:92226661 original size:14 final size:13
Alignment explanation
Indices: 92226629--92226669 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
92226619 TTCTTTCGAA
92226629 TCTTTTTTTTCTT
1 TCTTTTTTTTCTT
*
92226642 TCTTTTTTTTGTGT
1 TCTTTTTTTTCT-T
*
92226656 TGTTTTTTTTCTT
1 TCTTTTTTTTCTT
92226669 T
1 T
92226670 ATATATACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.00, C:0.10, G:0.07, T:0.83
Consensus pattern (13 bp):
TCTTTTTTTTCTT
Found at i:92226903 original size:24 final size:23
Alignment explanation
Indices: 92226871--92226915 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
92226861 TATATATTTC
*
92226871 TTATGTATATATTCTTAAATACTA
1 TTATATATATATT-TTAAATACTA
92226895 TTATATATATATTTTAAATAC
1 TTATATATATATTTTAAATAC
92226916 CATATTGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.40, C:0.07, G:0.02, T:0.51
Consensus pattern (23 bp):
TTATATATATATTTTAAATACTA
Found at i:92226904 original size:39 final size:39
Alignment explanation
Indices: 92226832--92226908 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
92226822 TTTATATATA
* * *
92226832 TTATGTATATATTTTTTAATGCCATTAGTTATATATTTC
1 TTATGTATATATTCTTAAATACCATTAGTTATATATTTC
*
92226871 TTATGTATATATTCTTAAATACTATTA-TATATATATTT
1 TTATGTATATATTCTTAAATACCATTAGT-TATATATTT
92226909 TAAATACCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.03
39 32 0.97
ACGTcount: A:0.32, C:0.06, G:0.05, T:0.56
Consensus pattern (39 bp):
TTATGTATATATTCTTAAATACCATTAGTTATATATTTC
Found at i:92227882 original size:21 final size:21
Alignment explanation
Indices: 92227856--92227901 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
92227846 AGGGTGGATT
*
92227856 AGCTCTTACGAGCTTCTGTTC
1 AGCTCTTACGAGCATCTGTTC
92227877 AGCTCTTACGAGCATCTGTTC
1 AGCTCTTACGAGCATCTGTTC
92227898 AGCT
1 AGCT
92227902 TTTGAGCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.28, G:0.20, T:0.35
Consensus pattern (21 bp):
AGCTCTTACGAGCATCTGTTC
Found at i:92228121 original size:14 final size:14
Alignment explanation
Indices: 92228102--92228132 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
92228092 TGACAGAGAG
92228102 TTTTTCTTGGATGA
1 TTTTTCTTGGATGA
*
92228116 TTTTTCTTGTATGA
1 TTTTTCTTGGATGA
92228130 TTT
1 TTT
92228133 ATTATAGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.06, G:0.16, T:0.65
Consensus pattern (14 bp):
TTTTTCTTGGATGA
Found at i:92229454 original size:44 final size:43
Alignment explanation
Indices: 92229391--92229480 Score: 146
Period size: 44 Copynumber: 2.1 Consensus size: 43
92229381 AACTCTATTT
92229391 TTAGTTTCTCACTTAAACTCTAATTAGTGTAGGTTATTTTAATA
1 TTAGTTTCTCACTTAAACTCTAATTAGTGTAGG-TATTTTAATA
*
92229435 TTAGTTTC-CAACTTAAACTCTGATTAGTGTAGGTATTTTAATA
1 TTAGTTTCTC-ACTTAAACTCTAATTAGTGTAGGTATTTTAATA
92229478 TTA
1 TTA
92229481 TTTGACCTAC
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
43 14 0.32
44 30 0.68
ACGTcount: A:0.30, C:0.11, G:0.12, T:0.47
Consensus pattern (43 bp):
TTAGTTTCTCACTTAAACTCTAATTAGTGTAGGTATTTTAATA
Found at i:92229588 original size:22 final size:22
Alignment explanation
Indices: 92229532--92229581 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 22
92229522 TCCTAGAAAG
*
92229532 ATAACCCATTACACATTTAGGT
1 ATAACCCTTTACACATTTAGGT
92229554 ATAACCCTTTACACATTTAGGT
1 ATAACCCTTTACACATTTAGGT
92229576 ACTAAC
1 A-TAAC
92229582 TTTTACAAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 22 0.85
23 4 0.15
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (22 bp):
ATAACCCTTTACACATTTAGGT
Found at i:92233973 original size:14 final size:14
Alignment explanation
Indices: 92233954--92233980 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
92233944 TCTCAAACCT
92233954 AATGATATATGTAG
1 AATGATATATGTAG
92233968 AATGATATATGTA
1 AATGATATATGTA
92233981 TTTATTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.37
Consensus pattern (14 bp):
AATGATATATGTAG
Found at i:92242842 original size:41 final size:41
Alignment explanation
Indices: 92242781--92242863 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
92242771 AAGTAATTTT
* *
92242781 ACAGATCCATTAACTGAAATCAGCCCCTAATATTCCATAGA
1 ACAGATCCATTAACTAAAATCAACCCCTAATATTCCATAGA
*
92242822 ACAGATCCATTAACTAAAATCAACCCTTAATATTCCATAGA
1 ACAGATCCATTAACTAAAATCAACCCCTAATATTCCATAGA
92242863 A
1 A
92242864 TAGACACCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.42, C:0.25, G:0.07, T:0.25
Consensus pattern (41 bp):
ACAGATCCATTAACTAAAATCAACCCCTAATATTCCATAGA
Found at i:92245311 original size:91 final size:89
Alignment explanation
Indices: 92245205--92245376 Score: 245
Period size: 91 Copynumber: 1.9 Consensus size: 89
92245195 AGTTAAGCTT
* * * * *
92245205 TTTTTTTTTACTCAATTGAGCATTTGAACTTTCAAAATGCATCAAAAAAACCTTCAAACTTTTTT
1 TTTTTTTTCACTCAATTGAGCACTTAAACTTTCAAAATGCATCAAAAAAACCCTCAAA-TATTTT
92245270 AAAAAAAGCAATTAAGCCCTTGCTCC
65 AAAAAAA-CAATTAAGCCCTTGCTCC
* * * *
92245296 TTTTTTTTCACTCAATTGGGTACTTAAACTTTCAAAATGCATCAAAAAGACCCTCAAATATTTTC
1 TTTTTTTTCACTCAATTGAGCACTTAAACTTTCAAAATGCATCAAAAAAACCCTCAAATATTTTA
92245361 AAAAAACAATTAAGCC
66 AAAAAACAATTAAGCC
92245377 ACCGCTCTTA
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
89 10 0.14
90 11 0.15
91 51 0.71
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.35
Consensus pattern (89 bp):
TTTTTTTTCACTCAATTGAGCACTTAAACTTTCAAAATGCATCAAAAAAACCCTCAAATATTTTA
AAAAAACAATTAAGCCCTTGCTCC
Found at i:92245457 original size:19 final size:18
Alignment explanation
Indices: 92245424--92245478 Score: 58
Period size: 18 Copynumber: 3.0 Consensus size: 18
92245414 ATAAAAAGAA
*
92245424 TAAATTTTAGA-AAAATTAT
1 TAAATTTTA-ATAAAAAT-T
92245443 TAAATTTTAATAAAAATT
1 TAAATTTTAATAAAAATT
* *
92245461 TAAAATTTATTAAAAATT
1 TAAATTTTAATAAAAATT
92245479 AGATTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 18 0.56
19 14 0.44
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
TAAATTTTAATAAAAATT
Found at i:92245506 original size:10 final size:10
Alignment explanation
Indices: 92245487--92245538 Score: 54
Period size: 10 Copynumber: 5.3 Consensus size: 10
92245477 TTAGATTTTT
92245487 TTAT-AAAAA
1 TTATAAAAAA
*
92245496 TTGTAAAAAA
1 TTATAAAAAA
*
92245506 -TAAAAAAAA
1 TTATAAAAAA
92245515 TTTATAAAAAA
1 -TTATAAAAAA
*
92245526 TCATAAAAAA
1 TTATAAAAAA
92245536 TTA
1 TTA
92245539 ACAACCCTAG
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
9 10 0.29
10 16 0.47
11 8 0.24
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (10 bp):
TTATAAAAAA
Found at i:92245514 original size:20 final size:20
Alignment explanation
Indices: 92245491--92245538 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
92245481 ATTTTTTTAT
*
92245491 AAAAATTGTAAAAAATAAAA
1 AAAAATTATAAAAAATAAAA
* * *
92245511 AAAATTTATAAAAAATCATA
1 AAAAATTATAAAAAATAAAA
92245531 AAAAATTA
1 AAAAATTA
92245539 ACAACCCTAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (20 bp):
AAAAATTATAAAAAATAAAA
Found at i:92245673 original size:12 final size:10
Alignment explanation
Indices: 92245660--92245773 Score: 55
Period size: 10 Copynumber: 11.9 Consensus size: 10
92245650 TTTTGGTATA
92245660 ATAA-TTTTT
1 ATAATTTTTT
92245669 ATAATTTTTT
1 ATAATTTTTT
*
92245679 AT-A-TTTCT
1 ATAATTTTTT
* *
92245687 AT-GTATTTT
1 ATAATTTTTT
92245696 ATAATTTTTT
1 ATAATTTTTT
**
92245706 ACGA-TTTTT
1 ATAATTTTTT
**
92245715 ATAAAATTTT
1 ATAATTTTTT
*
92245725 A-CATTTTTT
1 ATAATTTTTT
*
92245734 AT--TTTTTA
1 ATAATTTTTT
*
92245742 AGAATTTTATAT
1 ATAATTTT-T-T
92245754 ATATATTTTTT
1 ATA-ATTTTTT
92245765 ATAATTTTT
1 ATAATTTTT
92245774 AATATTTTAA
Statistics
Matches: 77, Mismatches: 18, Indels: 19
0.68 0.16 0.17
Matches are distributed among these distances:
8 12 0.16
9 23 0.30
10 29 0.38
11 5 0.06
12 3 0.04
13 5 0.06
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (10 bp):
ATAATTTTTT
Done.