Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 273 of 373
Found at i:92587673 original size:48 final size:48
Alignment explanation
Indices: 92587460--92587674 Score: 226
Period size: 46 Copynumber: 4.6 Consensus size: 48
92587450 TGATATGTGT
* * * * *
92587460 GCTAATGTAAGACATGTCTGGGACATGCATTGGCCAT-A-TTATGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATAT-ACAA
* * *
92587506 GCCAGTGTAAGACATGTTTGGGATATGCATCGGCCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
* * *
92587554 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAT-GA-AA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
92587600 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCT-AGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-TGAGATATACAA
* * * * *
92587648 GCTAATGAAAAACCTGTTTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
92587675 GCGTCATCTT
Statistics
Matches: 143, Mismatches: 20, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
46 71 0.50
47 5 0.03
48 67 0.47
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
Found at i:92587822 original size:49 final size:48
Alignment explanation
Indices: 92587465--92587822 Score: 220
Period size: 46 Copynumber: 7.6 Consensus size: 48
92587455 TGTGTGCTAA
* * *
92587465 TGTAAGACATGTCTGGGACATGCATTGGCCAT-AT-TATGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTTGATATATGAAAGCCAG
* * *
92587511 TGTAAGACATGTTTGGGATATGCATCGGCCTTGAGATAT-ACAAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTTGATATATGA-AAGCCAG
* * *
92587559 TGTAAGACATGTCTGGGACATGCATCGGCATTG--AGATGAAAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTTGATATATGAAAGCCAG
* * *
92587605 TGTAAGACATGTCTGGGACATGCATCGGCCTCTAGATATA--CAAGCTAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCT-T-GATATATGAAAGCCAG
* * * * * ** * * *
92587653 TGAAAAACCTGTTTGGGACATGGCGTC-ATCTTG-T-TGTG--TGTCAG
1 TGTAAGACATGTCTGGGACAT-GCATCGGCCTTGATATATGAAAGCCAG
** * * * * * * *
92587697 TGTAAGATTTGTCTAGGATATTGCATTGACAC-CGATAGATGAGAGCCAG
1 TGTAAGACATGTCTGGGACA-TGCATCGGC-CTTGATATATGAAAGCCAG
* * * *
92587746 TGTAAGACCTGTCTAGGACACAGCATCGGCCTTGATATATGAAAGTCAG
1 TGTAAGACATGTCTGGGACA-TGCATCGGCCTTGATATATGAAAGCCAG
* *
92587795 TGTAAGACCTGTCTAGGACATGACATCG
1 TGTAAGACATGTCTGGGACATG-CATCG
92587823 ACTTTGATGT
Statistics
Matches: 238, Mismatches: 54, Indels: 37
0.72 0.16 0.11
Matches are distributed among these distances:
44 19 0.08
45 4 0.02
46 70 0.29
47 7 0.03
48 67 0.28
49 69 0.29
50 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (48 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCTTGATATATGAAAGCCAG
Found at i:92587830 original size:49 final size:48
Alignment explanation
Indices: 92587735--92587872 Score: 138
Period size: 49 Copynumber: 2.9 Consensus size: 48
92587725 ACACCGATAG
* * *
92587735 ATGAGAGCCAGTGTAAGACCTGTCTAGGACA-CAGCATCGGCCTTGATAT
1 ATGAAAGCCAGTGTAAGACCTGTCTAGGACATGAGCATCGACCTTG--AT
* *
92587784 ATGAAAGTCAGTGTAAGACCTGTCTAGGACATGA-CATCGACTTTGAT
1 ATGAAAGCCAGTGTAAGACCTGTCTAGGACATGAGCATCGACCTTGAT
* ** * *
92587831 GTGCTAGCCAATGTAAGACCATGTCTAGGACATG-GCGTCGAC
1 ATGAAAGCCAGTGTAAGACC-TGTCTAGGACATGAGCATCGAC
92587873 ATCTTATCCC
Statistics
Matches: 75, Mismatches: 11, Indels: 7
0.81 0.12 0.08
Matches are distributed among these distances:
47 17 0.23
48 19 0.25
49 38 0.51
50 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (48 bp):
ATGAAAGCCAGTGTAAGACCTGTCTAGGACATGAGCATCGACCTTGAT
Found at i:92598899 original size:27 final size:27
Alignment explanation
Indices: 92598869--92599141 Score: 317
Period size: 27 Copynumber: 10.3 Consensus size: 27
92598859 GTAATGACCA
92598869 AAATACCCCCATAGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGATCG
*
92598896 AAATA-CCCCA-AGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGATCG
*
92598921 AAATA-CCCTATAGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGATCG
* *
92598947 AAATACCCACATAGGGTAAAAT-AACTG
1 AAATACCCCCATAGGGTAAAATGATC-G
* *
92598974 AAATACCCCTATAGGATAAAATGA-CTG
1 AAATACCCCCATAGGGTAAAATGATC-G
*
92599001 AAATACCCCCATAGGATAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGATCG
* * * * * * * *
92599028 AAATGCTCCAATATGATAAAATAACCA
1 AAATACCCCCATAGGGTAAAATGATCG
* *
92599055 AAATACCCCCATAGGG-AAAATGACCA
1 AAATACCCCCATAGGGTAAAATGATCG
92599081 AAATA-CCCCATAGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGATCG
*
92599107 AAATACCCCCATAGGGTAAAATGATCA
1 AAATACCCCCATAGGGTAAAATGATCG
92599134 AAATACCC
1 AAATACCC
92599142 TTGTAAGGTA
Statistics
Matches: 213, Mismatches: 26, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
25 33 0.15
26 53 0.25
27 125 0.59
28 2 0.01
ACGTcount: A:0.45, C:0.21, G:0.15, T:0.18
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGATCG
Found at i:92599540 original size:18 final size:18
Alignment explanation
Indices: 92599517--92599559 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
92599507 CGTTTACTGC
92599517 TACTGCACTGTATACCGT
1 TACTGCACTGTATACCGT
92599535 TACTGCACTGTATACCGT
1 TACTGCACTGTATACCGT
92599553 TACTGCA
1 TACTGCA
92599560 AAGGGCAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.33
Consensus pattern (18 bp):
TACTGCACTGTATACCGT
Found at i:92602675 original size:27 final size:27
Alignment explanation
Indices: 92602336--92602664 Score: 451
Period size: 27 Copynumber: 12.2 Consensus size: 27
92602326 GGGCCGAAGT
*
92602336 AATGACCGAAATACCCCCGTAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* * * *
92602363 AATAATCGAAGTACCCCTATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* *
92602390 AATGACCGAAGTACCCCTATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
92602417 AATGACCGAAATACCCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* * *
92602444 AATGATCAAAATACCCCCATAAGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
** *
92602471 AATGATTGAAATACCCCCATAAGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* * *
92602498 AATGATCGAAATTCTCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
*
92602525 AATGACCAAAATACCCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
* * *
92602552 AATGATCGAAATACCCCTATAGGATAA
1 AATGACCGAAATACCCCCATAGGGTAA
* *
92602579 AATGACCAAAATACCCCCATAGGATAA
1 AATGACCGAAATACCCCCATAGGGTAA
*
92602606 AATGACCGAAATACCCCTATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
92602633 AATGACCGAAATACCCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAA
92602660 AATGA
1 AATGA
92602665 TTGTAATACC
Statistics
Matches: 269, Mismatches: 33, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 269 1.00
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (27 bp):
AATGACCGAAATACCCCCATAGGGTAA
Found at i:92607543 original size:40 final size:41
Alignment explanation
Indices: 92607399--92607549 Score: 187
Period size: 41 Copynumber: 3.7 Consensus size: 41
92607389 AATCATTCCA
* * *
92607399 ATGCCATATTCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAATCTCATATCG
* * * *
92607441 ATGCCAATAGCCCAGCTATGGTCTTACATGATTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAATCTCATATCG
* * *
92607483 ATGCCATATCCCAGACATGGTCTTACACAAATCTCATAACG
1 ATGCCATATCCCAGATATGGTCTTACACGAATCTCATATCG
92607524 A-GCCATATCCCAGATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
92607550 TGTAAACTCA
Statistics
Matches: 94, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
40 24 0.26
41 30 0.32
42 21 0.22
43 19 0.20
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAATCTCATATCG
Found at i:92614218 original size:47 final size:46
Alignment explanation
Indices: 92614142--92614458 Score: 244
Period size: 47 Copynumber: 6.8 Consensus size: 46
92614132 AGGGTGTAAC
92614142 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-CATCAA
* * * *
92614189 GTCGATGCCATGTCCCAGACATGGACTTACACTGACT-ATCGAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC---ATC-AA
* * *
92614238 GCCAACGCCATGTCCCAGACATGGT-TTACACTAGCTC-TCA-CATATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATC--A-A
* * * *
92614284 CGTGCCAATGCCATATCCCAAACATGGTCTTACACTGGCACATC-TCATA
1 ---GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCA-A
* * *
92614333 GCTGATG-CATGTCCCAGAAAT-GTCTTACACTGGCTTACATC-TCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCATC-AA
* *
92614379 GCCGATG-CATGTCCCATACAT-GTCTTACACTAGCTC-TCATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCA--TCAA
92614424 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTGG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGG
92614459 TACACAAATA
Statistics
Matches: 218, Mismatches: 31, Indels: 42
0.75 0.11 0.14
Matches are distributed among these distances:
43 2 0.01
44 15 0.07
45 16 0.07
46 52 0.24
47 59 0.27
48 14 0.06
49 47 0.22
50 10 0.05
51 3 0.01
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCAA
Found at i:92614422 original size:145 final size:144
Alignment explanation
Indices: 92614146--92614458 Score: 346
Period size: 145 Copynumber: 2.2 Consensus size: 144
92614136 TGTAACGCCG
* * * *
92614146 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCGATGCCATGTCCCAGACAT
1 ATGCCATATCCCAAACATGGTCTTACACTGGCACATCCAT-AAGTCGATGCCATGTCCCAGAAAT
92614211 GGACTTACACTGACTATCGAAATCGAGGCCAACGCCATGTCCCAGACATGGTTTACACTAGCTCT
65 GGACTTACACTGACTATCGAAATCGAGGCCAACGCCATGTCCCAGACATGGTTTACACTAGCTCT
92614276 CACATATACGTGCCA
130 CACATATACGTGCCA
92614291 ATGCCATATCCCAAACATGGTCTTACACTGGCACATCTCAT-AG-CTGATG-CATGTCCCAGAAA
1 ATGCCATATCCCAAACATGGTCTTACACTGGCACATC-CATAAGTC-GATGCCATGTCCCAGAAA
* * ** * * *
92614353 T-GTCTTACACTGGCT-TAC-ATCTCGAGGCCGATG-CATGTCCCATACAT-GTCTTACACTAGC
64 TGGACTTACACTGACTAT-CGAAATCGAGGCCAACGCCATGTCCCAGACATGGT-TTACACTAGC
*
92614413 TCTCATC-TCA-A--TGCCG
127 TCTCA-CAT-ATACGTGCCA
* *
92614429 ATGCCATGTCCCAGACAT-GTCTTACACTGG
1 ATGCCATATCCCAAACATGGTCTTACACTGG
92614459 TACACAAATA
Statistics
Matches: 148, Mismatches: 14, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
137 12 0.08
138 20 0.14
139 2 0.01
140 30 0.20
141 14 0.09
142 13 0.09
143 14 0.09
144 6 0.04
145 34 0.23
146 3 0.02
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (144 bp):
ATGCCATATCCCAAACATGGTCTTACACTGGCACATCCATAAGTCGATGCCATGTCCCAGAAATG
GACTTACACTGACTATCGAAATCGAGGCCAACGCCATGTCCCAGACATGGTTTACACTAGCTCTC
ACATATACGTGCCA
Found at i:92622756 original size:6 final size:6
Alignment explanation
Indices: 92622735--92622767 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
92622725 TGATGTTTAA
92622735 TTTATT ATTT-TT TTTATT TTTATT TTTATT TTT
1 TTTATT -TTTATT TTTATT TTTATT TTTATT TTT
92622768 TTCATTTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
5 3 0.12
6 19 0.76
7 3 0.12
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:92622759 original size:15 final size:15
Alignment explanation
Indices: 92622734--92622800 Score: 57
Period size: 15 Copynumber: 4.4 Consensus size: 15
92622724 ATGATGTTTA
92622734 ATTTATTATTTTTTTT
1 ATTT-TTATTTTTTTT
92622750 ATTTTTATTTTTATTT
1 ATTTTTATTTTT-TTT
* * *
92622766 -TTTTCATTTCATTTC
1 ATTTTTATTT-TTTTT
*
92622781 A-TTTTATTTCTTTT
1 ATTTTTATTTTTTTT
92622795 ATTTTT
1 ATTTTT
92622801 TATATTACTT
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
14 4 0.10
15 29 0.71
16 8 0.20
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (15 bp):
ATTTTTATTTTTTTT
Found at i:92624786 original size:12 final size:13
Alignment explanation
Indices: 92624753--92624791 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
92624743 TGAGTAATCA
92624753 CACACGGGCGTGT
1 CACACGGGCGTGT
92624766 CACACGGGCGTG-
1 CACACGGGCGTGT
*
92624778 CACATGGGCGTGT
1 CACACGGGCGTGT
92624791 C
1 C
92624792 CCTACAGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 11 0.46
13 13 0.54
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:92635349 original size:40 final size:40
Alignment explanation
Indices: 92635277--92635462 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
92635267 GCTACTCGTT
* *
92635277 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
92635317 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
92635357 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
92635397 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
92635438 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
92635463 CATCATTCAA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 114 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:92643368 original size:40 final size:40
Alignment explanation
Indices: 92643331--92643423 Score: 134
Period size: 40 Copynumber: 2.3 Consensus size: 40
92643321 GCTACTCGTT
*
92643331 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCAGATT-TAGTAACTCGCA
* **
92643371 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCAGATTTAGTAACTCGCA
92643411 CAAATGCCTTCGG
1 CAAATGCCTTCGG
92643424 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 46 0.96
41 2 0.04
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCAGATTTAGTAACTCGCA
Found at i:92651989 original size:47 final size:47
Alignment explanation
Indices: 92651928--92652051 Score: 131
Period size: 47 Copynumber: 2.6 Consensus size: 47
92651918 GTGCGAATAA
* * ** * * * *
92651928 TACCTTGAGTTGGCTACGGGCCATGATTTAGGTATTTTGTGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGATATACATACTTCGGGAGAAGT
* * *
92651975 TACCTTGATTTGGCTATGGGCCATGGTATACATACTTCGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGATATACATACTTCGGGAGAAGT
* *
92652022 TACCTTGATTTGGCTACAGGCCATGGTATA
1 TACCTTGATTTGGCTACGGGCCATGATATA
92652052 GGTTCTTATC
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 64 1.00
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGATATACATACTTCGGGAGAAGT
Found at i:92653742 original size:46 final size:46
Alignment explanation
Indices: 92653589--92653749 Score: 186
Period size: 46 Copynumber: 3.5 Consensus size: 46
92653579 CATATGTAGC
* *
92653589 GACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCG
1 GACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCG
* * *
92653635 GACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-CGAACTCG
1 GACTCAACTCAACGAGCTCGGA---C-A-TTCGCATCCATAAGTGAACTCG
*
92653682 GACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCG
1 GACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCG
*
92653728 GACTCAACTCAACGAGTTCGGA
1 GACTCAACTCAACGAGCTCGGA
92653750 TGCCCAAATA
Statistics
Matches: 97, Mismatches: 9, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 50 0.52
47 28 0.29
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
GACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCG
Found at i:92653768 original size:46 final size:45
Alignment explanation
Indices: 92653625--92653755 Score: 140
Period size: 47 Copynumber: 2.8 Consensus size: 45
92653615 CGCATCCATA
* *
92653625 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-C
* * * * *
92653673 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCC
92653718 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA
92653756 AATATCCCAG
Statistics
Matches: 70, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
44 5 0.07
45 1 0.01
46 28 0.40
47 31 0.44
48 1 0.01
49 4 0.06
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCC
Found at i:92659220 original size:93 final size:93
Alignment explanation
Indices: 92659107--92659277 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
92659097 CCCATAAGGA
* *
92659107 AACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
92659172 GAGCTCGGATGCCTAGTTACATCTCACG
66 GAGCTCGGATGCCTAGTTACATCTCACG
* * *
92659200 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
*
92659265 GAGTTCGGATGCC
66 GAGCTCGGATGCC
92659278 CAAATATCCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCACG
Found at i:92659273 original size:46 final size:46
Alignment explanation
Indices: 92659098--92659273 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
92659088 TGTAACCCGC
* *
92659098 CCATAAG-GAAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTG-AACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
*
92659144 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * * *
92659194 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
92659237 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
92659274 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:92669024 original size:17 final size:16
Alignment explanation
Indices: 92669002--92669047 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
92668992 TAATTATATA
92669002 TATTAAATATATAAAAT
1 TATTAAATAT-TAAAAT
*
92669019 TATTAATTATTAAAAT
1 TATTAAATATTAAAAT
92669035 CTA-TAAA-ATTAAA
1 -TATTAAATATTAAA
92669048 CTTTAATGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 6 0.23
16 9 0.35
17 11 0.42
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (16 bp):
TATTAAATATTAAAAT
Found at i:92669156 original size:30 final size:30
Alignment explanation
Indices: 92669122--92669189 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
92669112 ATTAAATTTG
*
92669122 TATATTACTAATAC-ATAAAATAATAATATA
1 TATATTACTAATACTA-AAAATAATAATACA
* * *
92669152 TATATAACTATTACTAAAAATATTAATACA
1 TATATTACTAATACTAAAAATAATAATACA
92669182 TATGATTA
1 TAT-ATTA
92669190 GTATTAATAC
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
30 27 0.87
31 4 0.13
ACGTcount: A:0.53, C:0.07, G:0.01, T:0.38
Consensus pattern (30 bp):
TATATTACTAATACTAAAAATAATAATACA
Found at i:92669708 original size:22 final size:22
Alignment explanation
Indices: 92669687--92669733 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
92669677 TAATGAAATA
*
92669687 ATATAT-TTTATAAGTATTAAT
1 ATATATATTTATAACTATTAAT
*
92669708 ATATATATTTATAACTATTATT
1 ATATATATTTATAACTATTAAT
92669730 ATAT
1 ATAT
92669734 TATAGATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
ATATATATTTATAACTATTAAT
Found at i:92671951 original size:3 final size:3
Alignment explanation
Indices: 92671943--92671978 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
92671933 CACATATTTG
92671943 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
92671979 ATTTTTTTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:92676447 original size:47 final size:46
Alignment explanation
Indices: 92676394--92676656 Score: 240
Period size: 47 Copynumber: 5.6 Consensus size: 46
92676384 TGGGGTAAAG
92676394 TGCCGATGCTATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTC-A
1 TGCCGATGC-ATGTCCCAGACATGGTCTTACACT-GCTC-TCATCTCAA
* *
92676441 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTC-G
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTG-CTCTCATCTCAA
* *
92676488 TAGCCGATGCATGTCCCAGACAT-GTCTTACACTGACT-TCTGTCTCGA
1 T-GCCGATGCATGTCCCAGACATGGTCTTACACTG-CTCTC-ATCTCAA
* * * *
92676535 GGCCGATGCATGTCTCAGACAT-GTCTTACACTAGCACTCGTCTCAA
1 TGCCGATGCATGTCCCAGACATGGTCTTACACT-GCTCTCATCTCAA
*
92676581 TACCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCA--T-AA
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACT-GCTCTCATCTCAA
*
92676626 TGTGGCCGATGCATGTCTCAGACAT-GTCTTA
1 --T-GCCGATGCATGTCCCAGACATGGTCTTA
92676657 AAATAGCTCA
Statistics
Matches: 187, Mismatches: 16, Indels: 27
0.81 0.07 0.12
Matches are distributed among these distances:
45 4 0.02
46 70 0.37
47 84 0.45
48 29 0.16
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGGTCTTACACTGCTCTCATCTCAA
Found at i:92676641 original size:94 final size:91
Alignment explanation
Indices: 92676395--92676656 Score: 275
Period size: 94 Copynumber: 2.8 Consensus size: 91
92676385 GGGGTAAAGT
* * * *
92676395 GCCGATGCTATGTCCCAGACATGGTCTTACACTAG--CTCATATCTCATGCCGATGCCATGTCCC
1 GCCGATGC-ATGTCCCAGACATGGTCTTACACTGGCTCTCATATGT--GGCCGATG-CATGTCTC
*
92676458 AGACATGGTCTTACACTGACTATCATCTCGTA
62 AGACAT-GTCTTACACTGAC-ATCATCTCATA
* * * *
92676490 GCCGATGCATGTCCCAGACAT-GTCTTACACTGACT-TCTGTCTCGAGGCCGATGCATGTCTCAG
1 GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTC-ATAT-GTGGCCGATGCATGTCTCAG
*
92676553 ACATGTCTTACACT-AGCACTCGTCTCAATA
64 ACATGTCTTACACTGA-CA-TCATCTC-ATA
92676583 -CCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCTCAG
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATGTGGCCGATGCATGTCTCAG
92676647 ACATGTCTTA
64 ACATGTCTTA
92676657 AAATAGCTCA
Statistics
Matches: 142, Mismatches: 14, Indels: 23
0.79 0.08 0.13
Matches are distributed among these distances:
91 2 0.01
92 23 0.16
93 39 0.27
94 65 0.46
95 13 0.09
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (91 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGTGGCCGATGCATGTCTCAGAC
ATGTCTTACACTGACATCATCTCATA
Found at i:92676656 original size:140 final size:141
Alignment explanation
Indices: 92676395--92676656 Score: 379
Period size: 140 Copynumber: 1.9 Consensus size: 141
92676385 GGGGTAAAGT
* *
92676395 GCCGATGCTATGTCCCAGACATGGTCTTACACTAGCTCATATCTCATGCCGATGCCATGTCCCAG
1 GCCGATGCTATGTCCCAGACATGGTCTTACACTAGCACATATCTCATACCGATGCCATGTCCCAG
*
92676460 ACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGACT
66 ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGACT
92676525 TCTGTCTCGAG
131 TCTGTCTCGAG
* * *
92676536 GCCGATGC-ATGTCTCAGACAT-GTCTTACACTAGCAC-TCGTCTCAATACCGATGTCATGTCCC
1 GCCGATGCTATGTCCCAGACATGGTCTTACACTAGCACAT-ATCTC-ATACCGATGCCATGTCCC
* * * *
92676598 AGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCTCAGACATGTCTTA
64 AGACATGGTCTTACACTGACTATCAT-ATCGTAGCCGATGCATGTCCCAGACATGTCTTA
92676657 AAATAGCTCA
Statistics
Matches: 108, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
138 1 0.01
139 18 0.17
140 80 0.74
141 9 0.08
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (141 bp):
GCCGATGCTATGTCCCAGACATGGTCTTACACTAGCACATATCTCATACCGATGCCATGTCCCAG
ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGACT
TCTGTCTCGAG
Found at i:92678503 original size:21 final size:21
Alignment explanation
Indices: 92678478--92678544 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
92678468 ATTTTATGTA
92678478 ATTATATTATTATCATACATT
1 ATTATATTATTATCATACATT
* *
92678499 TTTATATTATT-TCAT-TATT
1 ATTATATTATTATCATACATT
* *
92678518 ATTATCATTATTATCATATAGT
1 ATTAT-ATTATTATCATACATT
92678540 ATTAT
1 ATTAT
92678545 TAATTGAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
19 7 0.18
20 10 0.26
21 14 0.36
22 8 0.21
ACGTcount: A:0.34, C:0.07, G:0.01, T:0.57
Consensus pattern (21 bp):
ATTATATTATTATCATACATT
Found at i:92692633 original size:94 final size:93
Alignment explanation
Indices: 92692498--92693106 Score: 593
Period size: 94 Copynumber: 6.5 Consensus size: 93
92692488 ATCAAAGTTT
92692498 CAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCCT
1 CAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCC-
* *
92692563 TGAAGTTGCAATAGTTTGAAATAAAATTA
65 TGAAGTTGCAATAGGTTGAAATGAAATTA
* * * * *
92692592 CAATAGCAAATCTTATCTCCCTAAAGTTGCAATGAAACAAGATGAAGCTACAAATCCTATATCCC
1 CAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA-CCC
* * * * * **
92692657 AGAAGTTGCAGT-GGGTCAGATTGAAGCTA
65 TGAAGTTGCAATAGGTTGA-AATGAAATTA
*
92692686 CAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGCTACAAAT-CTCATACCC
1 CAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCT-ATACCC
* * *
92692750 T-ATAGTTGCAGTGGGTTGGAATG-AATCTA
65 TGA-AGTTGCAATAGGTTGAAATGAAAT-TA
* ** * *
92692779 CAATAGTGAATCTTATCTCCCTGAAGTTATAGTGGAACAAGATTAAGCTACAAATCCTATACCAC
1 CAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACC-C
** *
92692844 TGAAGTTGCTGTAGG-TCAGAATG-AATCTA
65 TGAAGTTGCAATAGGTTGA-AATGAAAT-TA
** * * * * *
92692873 CCGTAGCGAATCTTATCTCTCTGAAGTTGTAGTGGAACAAGATAAAGCTACAAATTCTATACCCC
1 CAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA-CCC
* *
92692938 TGAAGTTTCAATAGGTTGGAATGAAATTA
65 TGAAGTTGCAATAGGTTGAAATGAAATTA
* * * * * * *
92692967 CAATGGCAAACCTTATCTCACTGAAGTTGCAATGGAGCAAGAAGAAGTTACAAATCCTATATCCC
1 CAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA-CCC
* * * *
92693032 TGAAGTTGCAAT-GGAATGGATTGAAACTA
65 TGAAGTTGCAATAGG-TTGAAATGAAATTA
** * * * *
92693061 CAATAGTAAATCTTATCTCCTTGAAGCTGCAATTGAGCAAGATGAA
1 CAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAA
92693107 ACTGTAACAC
Statistics
Matches: 427, Mismatches: 74, Indels: 28
0.81 0.14 0.05
Matches are distributed among these distances:
92 2 0.00
93 80 0.19
94 335 0.78
95 10 0.02
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.27
Consensus pattern (93 bp):
CAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCCT
GAAGTTGCAATAGGTTGAAATGAAATTA
Found at i:92692644 original size:50 final size:50
Alignment explanation
Indices: 92692590--92692738 Score: 134
Period size: 50 Copynumber: 3.1 Consensus size: 50
92692580 GAAATAAAAT
* *
92692590 TACAATAGCAAATCTTATCTCCCTAAAGTTGCAATGAAACAAGATGAAG-
1 TACAATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGAACAAGATGAAGC
* * **
92692639 --C--TA-CAAATCCTATATCCC-AGAAGTTGCAGTGGGTC-AGATTGAAGC
1 TACAATAGCAAATCTTATCTCCCTA-AAGTTGCAGTGGAACAAGA-TGAAGC
* * * *
92692684 TACAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATAAAGC
1 TACAATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGAACAAGATGAAGC
92692734 TACAA
1 TACAA
92692739 ATCTCATACC
Statistics
Matches: 77, Mismatches: 13, Indels: 19
0.71 0.12 0.17
Matches are distributed among these distances:
43 4 0.05
44 29 0.38
45 2 0.03
47 2 0.03
49 2 0.03
50 35 0.45
51 3 0.04
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (50 bp):
TACAATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGAACAAGATGAAGC
Found at i:92692984 original size:281 final size:282
Alignment explanation
Indices: 92692498--92693086 Score: 688
Period size: 281 Copynumber: 2.1 Consensus size: 282
92692488 ATCAAAGTTT
* * *
92692498 CAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCCT
1 CAATAGTGAATCTTATCTCCCTGAAGTTACAGTGGAACAAGATGAAGCTACAAATCCTATACCCT
**
92692563 TGAAGTTGCAATAGTTTGAAATAAAATTACAATAGCAAATCTTATCTCCCTAAAGTTGCAATGAA
66 TGAAGTTGCAATAGTCAGAAATAAAATTACAATAGCAAATCTTATCTCCCTAAAGTTGCAATGAA
* * * * * *
92692628 ACAAGATGAAGCTACAAATCCTATATCCCAGAAGTTGCAGTGGGTCAGATTGAAGCTACAATAGC
131 ACAAGATAAAGCTACAAATCCTATACCCCAGAAGTTGCAATAGGTCAGAATGAAACTACAATAGC
* * * *
92692693 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATA-AAGCTACAAAT-CTCATA-CCCT-ATA
196 AAACCTTATCTCACTGAAGTTGCAATGGAGCAAGA-AGAAGCTACAAATCCT-ATATCCCTGA-A
* ** *
92692754 GTTGCAGTGGGTTGGAATGAATCTA
258 GTTGCAATGGAATGGAATGAAACTA
* *
92692779 CAATAGTGAATCTTATCTCCCTGAAGTTATAGTGGAACAAGATTAAGCTACAAATCCTATACCAC
1 CAATAGTGAATCTTATCTCCCTGAAGTTACAGTGGAACAAGATGAAGCTACAAATCCTATACC-C
** * ** * * * * *
92692844 -TGAAGTTGCTGTAGGTCAG-AAT-GAATCTACCGTAGCGAATCTTATCTCTCTGAAGTTGTAGT
65 TTGAAGTTGCAATA-GTCAGAAATAAAAT-TACAATAGCAAATCTTATCTCCCTAAAGTTGCAAT
* * * * ** *
92692906 GGAACAAGATAAAGCTACAAATTCTATACCCCTGAAGTTTCAATAGGTTGGAATGAAATTACAAT
128 GAAACAAGATAAAGCTACAAATCCTATACCCCAGAAGTTGCAATAGGTCAGAATGAAACTACAAT
* *
92692971 GGCAAACCTTATCTCACTGAAGTTGCAATGGAGCAAGAAGAAGTTACAAATCCTATATCCCTGAA
193 AGCAAACCTTATCTCACTGAAGTTGCAATGGAGCAAGAAGAAGCTACAAATCCTATATCCCTGAA
*
92693036 GTTGCAATGGAATGGATTGAAACTA
258 GTTGCAATGGAATGGAATGAAACTA
* *
92693061 CAATAGTAAATCTTATCTCCTTGAAG
1 CAATAGTGAATCTTATCTCCCTGAAG
92693087 CTGCAATTGA
Statistics
Matches: 258, Mismatches: 43, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
280 4 0.02
281 198 0.77
282 55 0.21
283 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (282 bp):
CAATAGTGAATCTTATCTCCCTGAAGTTACAGTGGAACAAGATGAAGCTACAAATCCTATACCCT
TGAAGTTGCAATAGTCAGAAATAAAATTACAATAGCAAATCTTATCTCCCTAAAGTTGCAATGAA
ACAAGATAAAGCTACAAATCCTATACCCCAGAAGTTGCAATAGGTCAGAATGAAACTACAATAGC
AAACCTTATCTCACTGAAGTTGCAATGGAGCAAGAAGAAGCTACAAATCCTATATCCCTGAAGTT
GCAATGGAATGGAATGAAACTA
Found at i:92693039 original size:188 final size:188
Alignment explanation
Indices: 92692462--92693103 Score: 726
Period size: 188 Copynumber: 3.4 Consensus size: 188
92692452 AGTGACTCTC
* * * *
92692462 ATATCCCTGAAGATGCAGT-GGATCAG-ATCAAAGTTTCAATAGCGAATCTTATCTCCCTGAAGT
1 ATATCCCTGAAGTTGCAGTAGG-TCAGAAT-GAAGCTACAATAGCGAATCTTATCTCCCTGAAGT
* * * * * *
92692525 TGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCCTTGAAGTTGCAATAGTTTGAAATAAAAT
64 TGCAGTGGAGCAAGATAAAGCTACAAATTCTATACCCCTGAAGTTGCAATAGGTTGGAATGAAAT
* *
92692590 TACAATAGCAAATCTTATCTCCCTAAAGTTGCAATGAAACAAGATGAAGCTACAAATCCT
129 TACAATAGCAAATCTTATCTCCCTGAAGTTGCAATGGAACAAGATGAAGCTACAAATCCT
* * *
92692650 ATATCCCAGAAGTTGCAGTGGGTCAGATTGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTG
1 ATATCCCTGAAGTTGCAGTAGGTCAGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTG
* *
92692715 CAGTGGAGCAAGATAAAGCTACAAA-TCTCATA-CCCT-ATAGTTGCAGTGGGTTGGAATG-AAT
66 CAGTGGAGCAAGATAAAGCTACAAATTCT-ATACCCCTGA-AGTTGCAATAGGTTGGAATGAAAT
** ** * *
92692776 CTACAATAGTGAATCTTATCTCCCTGAAGTTATAGTGGAACAAGATTAAGCTACAAATCCT
129 -TACAATAGCAAATCTTATCTCCCTGAAGTTGCAATGGAACAAGATGAAGCTACAAATCCT
* * ** *
92692837 ATA-CCACTGAAGTTGCTGTAGGTCAGAATGAATCTACCGTAGCGAATCTTATCTCTCTGAAGTT
1 ATATCC-CTGAAGTTGCAGTAGGTCAGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTT
* * *
92692901 GTAGTGGAACAAGATAAAGCTACAAATTCTATACCCCTGAAGTTTCAATAGGTTGGAATGAAATT
65 GCAGTGGAGCAAGATAAAGCTACAAATTCTATACCCCTGAAGTTGCAATAGGTTGGAATGAAATT
* * * * * *
92692966 ACAATGGCAAACCTTATCTCACTGAAGTTGCAATGGAGCAAGAAGAAGTTACAAATCCT
130 ACAATAGCAAATCTTATCTCCCTGAAGTTGCAATGGAACAAGATGAAGCTACAAATCCT
* * * * ** * *
92693025 ATATCCCTGAAGTTGCAAT-GGAAT-GGATTGAAACTACAATAGTAAATCTTATCTCCTTGAAGC
1 ATATCCCTGAAGTTGCAGTAGG--TCAGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGT
* *
92693088 TGCAATTGAGCAAGAT
64 TGCAGTGGAGCAAGAT
92693104 GAAACTGTAA
Statistics
Matches: 378, Mismatches: 63, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
186 6 0.02
187 154 0.41
188 208 0.55
189 10 0.03
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.27
Consensus pattern (188 bp):
ATATCCCTGAAGTTGCAGTAGGTCAGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTG
CAGTGGAGCAAGATAAAGCTACAAATTCTATACCCCTGAAGTTGCAATAGGTTGGAATGAAATTA
CAATAGCAAATCTTATCTCCCTGAAGTTGCAATGGAACAAGATGAAGCTACAAATCCT
Found at i:92693802 original size:6 final size:6
Alignment explanation
Indices: 92693791--92693823 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
92693781 TTAAATTTCA
92693791 AAAAAT AAAAAT --AAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
92693824 ACAAAATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
4 4 0.16
6 21 0.84
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:92693810 original size:16 final size:16
Alignment explanation
Indices: 92693791--92693821 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
92693781 TTAAATTTCA
92693791 AAAAATAAAAATAAAT
1 AAAAATAAAAATAAAT
92693807 AAAAATAAAAATAAA
1 AAAAATAAAAATAAA
92693822 AAACAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (16 bp):
AAAAATAAAAATAAAT
Found at i:92693831 original size:12 final size:12
Alignment explanation
Indices: 92693791--92693823 Score: 52
Period size: 10 Copynumber: 2.9 Consensus size: 12
92693781 TTAAATTTCA
92693791 AAAAATAAAAAT
1 AAAAATAAAAAT
92693803 --AAATAAAAAT
1 AAAAATAAAAAT
92693813 AAAAATAAAAA
1 AAAAATAAAAA
92693824 ACAAAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 10 0.53
12 9 0.47
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAAATAAAAAT
Found at i:92694029 original size:21 final size:21
Alignment explanation
Indices: 92694004--92694070 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
92693994 ATTTTATGTA
92694004 ATTATATTATTATCATACATT
1 ATTATATTATTATCATACATT
* *
92694025 TTTATATTATT-TCAT-TATT
1 ATTATATTATTATCATACATT
* *
92694044 ATTATCATTATTATCATATAGT
1 ATTAT-ATTATTATCATACATT
92694066 ATTAT
1 ATTAT
92694071 TAATTGAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
19 7 0.18
20 10 0.26
21 14 0.36
22 8 0.21
ACGTcount: A:0.34, C:0.07, G:0.01, T:0.57
Consensus pattern (21 bp):
ATTATATTATTATCATACATT
Found at i:92696810 original size:33 final size:35
Alignment explanation
Indices: 92696750--92696820 Score: 85
Period size: 33 Copynumber: 2.1 Consensus size: 35
92696740 CTCGTAGTGC
* *
92696750 CATAACCCAGTTATGGTCTTTTCATTAAA-A-TGT
1 CATAACCCAGCTATGGTCTTTACATTAAATATTGT
*
92696783 CATATCCCAGCTATGGTC-TTACAATTAAATATTGT
1 CATAACCCAGCTATGGTCTTTAC-ATTAAATATTGT
92696818 CAT
1 CAT
92696821 GGTCCAACCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
32 3 0.09
33 22 0.69
34 1 0.03
35 6 0.19
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (35 bp):
CATAACCCAGCTATGGTCTTTACATTAAATATTGT
Found at i:92711719 original size:16 final size:16
Alignment explanation
Indices: 92711700--92711746 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
92711690 GATTTTATTC
92711700 CAATCAGATTGATTTT
1 CAATCAGATTGATTTT
**
92711716 CAATTTGATTTGATTTT
1 CAATCAGA-TTGATTTT
*
92711733 -ATTCAGATTGATTT
1 CAATCAGATTGATTT
92711747 AAAGGCTTCT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
15 7 0.28
16 10 0.40
17 8 0.32
ACGTcount: A:0.28, C:0.09, G:0.13, T:0.51
Consensus pattern (16 bp):
CAATCAGATTGATTTT
Found at i:92713945 original size:63 final size:63
Alignment explanation
Indices: 92713846--92713972 Score: 227
Period size: 63 Copynumber: 2.0 Consensus size: 63
92713836 GGTCAAACTA
**
92713846 GAGTGCTCATGGGCCGGGTCGGGCTCAACTAAAAATTTAGGCCTATTTTTTGGGCTCGGGCTG
1 GAGTGCTCATGGGCCGGGTCGGGCTCAACTAAAAATTTAGGCCTATTCATTGGGCTCGGGCTG
*
92713909 GAGTGCTCATGGGCCGGGTCGGGCTCAACTAAAAATTTAGGCTTATTCATTGGGCTCGGGCTG
1 GAGTGCTCATGGGCCGGGTCGGGCTCAACTAAAAATTTAGGCCTATTCATTGGGCTCGGGCTG
92713972 G
1 G
92713973 GCCGAGCCCA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.18, C:0.20, G:0.34, T:0.28
Consensus pattern (63 bp):
GAGTGCTCATGGGCCGGGTCGGGCTCAACTAAAAATTTAGGCCTATTCATTGGGCTCGGGCTG
Found at i:92714248 original size:30 final size:30
Alignment explanation
Indices: 92714214--92714273 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
92714204 ACTAAAATAG
*
92714214 CAAATACCTCTAAAT-TAATAACAAAATTAA
1 CAAATACAT-TAAATATAATAACAAAATTAA
* *
92714244 CAAATGCATTTAATATAATAACAAAATTAA
1 CAAATACATTAAATATAATAACAAAATTAA
92714274 TAATAAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 4 0.15
30 22 0.85
ACGTcount: A:0.57, C:0.13, G:0.02, T:0.28
Consensus pattern (30 bp):
CAAATACATTAAATATAATAACAAAATTAA
Found at i:92715510 original size:33 final size:33
Alignment explanation
Indices: 92715468--92715534 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
92715458 ACAACAACTT
92715468 TTCATCTCTATTAAAATAGTCATTAAATAAAAA
1 TTCATCTCTATTAAAATAGTCATTAAATAAAAA
92715501 TTCATCTCTATTAAAATAGTCATTAAATAAAAA
1 TTCATCTCTATTAAAATAGTCATTAAATAAAAA
92715534 T
1 T
92715535 AATAAATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.48, C:0.12, G:0.03, T:0.37
Consensus pattern (33 bp):
TTCATCTCTATTAAAATAGTCATTAAATAAAAA
Found at i:92715515 original size:17 final size:18
Alignment explanation
Indices: 92715468--92715523 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
92715458 ACAACAACTT
92715468 TTCATCTCTATTAAAATA
1 TTCATCTCTATTAAAATA
* * *
92715486 GTCAT-T-AAATAAAA-A
1 TTCATCTCTATTAAAATA
92715501 TTCATCTCTATTAAAATA
1 TTCATCTCTATTAAAATA
*
92715519 GTCAT
1 TTCAT
92715524 TAAATAAAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 6
0.68 0.17 0.15
Matches are distributed among these distances:
15 5 0.18
16 7 0.25
17 7 0.25
18 9 0.32
ACGTcount: A:0.43, C:0.14, G:0.04, T:0.39
Consensus pattern (18 bp):
TTCATCTCTATTAAAATA
Found at i:92715531 original size:16 final size:16
Alignment explanation
Indices: 92715479--92715532 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
92715469 TCATCTCTAT
92715479 TAAAATAGTCATTAAA
1 TAAAATAGTCATTAAA
* * *
92715495 TAAAA-ATTCATCTCTAT
1 TAAAATAGTCAT-T-AAA
92715512 TAAAATAGTCATTAAA
1 TAAAATAGTCATTAAA
92715528 TAAAA
1 TAAAA
92715533 ATAATAAATT
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
15 5 0.17
16 12 0.41
17 7 0.24
18 5 0.17
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (16 bp):
TAAAATAGTCATTAAA
Found at i:92715533 original size:17 final size:17
Alignment explanation
Indices: 92715480--92715535 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
92715470 CATCTCTATT
92715480 AAAATAGTCATTAAATA
1 AAAATAGTCATTAAATA
** *
92715497 AAAAT--TCATCTCTATT
1 AAAATAGTCAT-TAAATA
92715513 AAAATAGTCATTAAATA
1 AAAATAGTCATTAAATA
92715530 AAAATA
1 AAAATA
92715536 ATAAATTTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
15 4 0.13
16 8 0.27
17 14 0.47
18 4 0.13
ACGTcount: A:0.55, C:0.09, G:0.04, T:0.32
Consensus pattern (17 bp):
AAAATAGTCATTAAATA
Found at i:92717171 original size:67 final size:67
Alignment explanation
Indices: 92717063--92717197 Score: 261
Period size: 67 Copynumber: 2.0 Consensus size: 67
92717053 TGTGGCCAAA
*
92717063 AATAGGCCATTTGAAAAGCCAATTTGCCACCCTACTCTCAACCATACATTTCAACCAAATTGGTA
1 AATAGGCCATTTGAAAAGCCAATTTGCCACCCTACTCTCAACCATACATTGCAACCAAATTGGTA
92717128 CC
66 CC
92717130 AATAGGCCATTTGAAAAGCCAATTTGCCACCCTACTCTCAACCATACATTGCAACCAAATTGGTA
1 AATAGGCCATTTGAAAAGCCAATTTGCCACCCTACTCTCAACCATACATTGCAACCAAATTGGTA
92717195 CC
66 CC
92717197 A
1 A
92717198 TTTCAATACA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.35, C:0.30, G:0.11, T:0.24
Consensus pattern (67 bp):
AATAGGCCATTTGAAAAGCCAATTTGCCACCCTACTCTCAACCATACATTGCAACCAAATTGGTA
CC
Found at i:92718243 original size:43 final size:43
Alignment explanation
Indices: 92718093--92718260 Score: 162
Period size: 43 Copynumber: 3.9 Consensus size: 43
92718083 ATATAGCTTG
* * * *
92718093 TACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCA-CA
1 TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCATAA
* * * * * *
92718134 TATCGATGCCACTATCCCAGACAGGGCCTTACACGTAACCGATTA
1 TA-CAATGCCAATATCCCAGACATGGTCTTACACGTAATC-ATAA
* *
92718179 -ACAATGCCAATGTACCAGACATGGTCTTACACGTAATCATAA
1 TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCATAA
* * *
92718221 TACAATGCCAATTTCCCAGACATGGTATTACATGTAATCA
1 TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCA
92718261 CATCTCAGTA
Statistics
Matches: 101, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
41 2 0.02
42 9 0.09
43 87 0.86
44 2 0.02
45 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (43 bp):
TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCATAA
Found at i:92718252 original size:86 final size:85
Alignment explanation
Indices: 92718094--92718257 Score: 186
Period size: 86 Copynumber: 1.9 Consensus size: 85
92718084 TATAGCTTGT
* * * * * * *
92718094 ACAATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTATCCCAGACAGG
1 ACAATGCCATATACCAGACATGGTCTTACACGTAATCAAATATCAATGCCAATATCCCAGACAGG
*
92718159 GCCTTACACGTAACCGATTA
66 GCATTACACGTAACCGATTA
* *
92718179 ACAATGCCAATGTACCAGACATGGTCTTACACGTAATCATAATA-CAATGCCAATTTCCCAGACA
1 ACAATGCC-ATATACCAGACATGGTCTTACACGTAATCA-AATATCAATGCCAATATCCCAGACA
* * *
92718243 TGGTATTACATGTAA
64 GGGCATTACACGTAA
92718258 TCACATCTCA
Statistics
Matches: 64, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
85 8 0.12
86 53 0.83
87 3 0.05
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.26
Consensus pattern (85 bp):
ACAATGCCATATACCAGACATGGTCTTACACGTAATCAAATATCAATGCCAATATCCCAGACAGG
GCATTACACGTAACCGATTA
Found at i:92721158 original size:17 final size:16
Alignment explanation
Indices: 92721136--92721169 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
92721126 GGGGATGGTG
92721136 TTTGTTTGATGTTTATT
1 TTTGTTTG-TGTTTATT
*
92721153 TTTGTTTGTTTTTATT
1 TTTGTTTGTGTTTATT
92721169 T
1 T
92721170 AATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (16 bp):
TTTGTTTGTGTTTATT
Found at i:92725965 original size:20 final size:20
Alignment explanation
Indices: 92725940--92725981 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
92725930 GTATCAAATC
92725940 GACAAATTAAAAACATTCTT
1 GACAAATTAAAAACATTCTT
92725960 GACAAATTAAAAACATTCTT
1 GACAAATTAAAAACATTCTT
92725980 GA
1 GA
92725982 GAAGGTTGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (20 bp):
GACAAATTAAAAACATTCTT
Found at i:92733561 original size:19 final size:18
Alignment explanation
Indices: 92733533--92733594 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 18
92733523 CATTTTTCAT
* *
92733533 TTTTTCATTTTCTAATTA
1 TTTTTAATTTTTTAATTA
*
92733551 GTTTTTAATTTTTTAATATTT
1 -TTTTTAATTTTTT-A-ATTA
92733572 TTTTTGAATTTTTTAATTA
1 TTTTT-AATTTTTTAATTA
92733591 TTTT
1 TTTT
92733595 CTGACATGGC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
19 18 0.50
20 7 0.19
21 11 0.31
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (18 bp):
TTTTTAATTTTTTAATTA
Found at i:92733576 original size:21 final size:22
Alignment explanation
Indices: 92733552--92733594 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
92733542 TTCTAATTAG
92733552 TTTTT-AATTTTTTAA-TATTT
1 TTTTTGAATTTTTTAATTATTT
92733572 TTTTTGAATTTTTTAATTATTT
1 TTTTTGAATTTTTTAATTATTT
92733594 T
1 T
92733595 CTGACATGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 5 0.24
21 10 0.48
22 6 0.29
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTTGAATTTTTTAATTATTT
Found at i:92734475 original size:31 final size:31
Alignment explanation
Indices: 92734440--92734498 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
92734430 GTCATTGAAC
92734440 TATTCAAAAGTTTTCATTTAAGTCACTAAAA
1 TATTCAAAAGTTTTCATTTAAGTCACTAAAA
* *
92734471 TATTCAAAAGTTTTTATTTAAGTTACTA
1 TATTCAAAAGTTTTCATTTAAGTCACTA
92734499 GATTGTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.44
Consensus pattern (31 bp):
TATTCAAAAGTTTTCATTTAAGTCACTAAAA
Found at i:92738285 original size:25 final size:25
Alignment explanation
Indices: 92738254--92738321 Score: 93
Period size: 25 Copynumber: 2.7 Consensus size: 25
92738244 TGTAAACAGT
* *
92738254 AAGCTCATGGGAGCTGAATAACGGG
1 AAGCTCATGAGAGCTGAATAACGAG
92738279 AAGCTCA-GACGAGCTGAATAACGAG
1 AAGCTCATGA-GAGCTGAATAACGAG
*
92738304 AAGCTCATAAGAGCTGAA
1 AAGCTCATGAGAGCTGAA
92738322 ATCGGTGACC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
24 1 0.03
25 36 0.95
26 1 0.03
ACGTcount: A:0.38, C:0.18, G:0.29, T:0.15
Consensus pattern (25 bp):
AAGCTCATGAGAGCTGAATAACGAG
Found at i:92739839 original size:20 final size:22
Alignment explanation
Indices: 92739797--92739841 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
92739787 TTTTTTCCAT
92739797 AAAAATATTAACAAATTAGAAAA
1 AAAAATATTAACAAATTA-AAAA
*
92739820 AAAAATATTAA-ATATTAAAAA
1 AAAAATATTAACAAATTAAAAA
92739841 A
1 A
92739842 TGAAAATTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.24
22 5 0.24
23 11 0.52
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (22 bp):
AAAAATATTAACAAATTAAAAA
Found at i:92739895 original size:10 final size:10
Alignment explanation
Indices: 92739880--92739982 Score: 63
Period size: 10 Copynumber: 10.4 Consensus size: 10
92739870 ATCAAAATAT
*
92739880 AAAAATTCTA
1 AAAAATTATA
*
92739890 ATAAATTATA
1 AAAAATTATA
92739900 AAAAATTAT-
1 AAAAATTATA
92739909 -AAAATTAATA
1 AAAAATT-ATA
*
92739919 AAAAATATTTA
1 AAAAAT-TATA
*
92739930 AAATATT-TA
1 AAAAATTATA
**
92739939 AAATTTTAT-
1 AAAAATTATA
92739948 AAAAATGTAT-
1 AAAAAT-TATA
*
92739958 TAAAATTATA
1 AAAAATTATA
*
92739968 TAAAAATCATA
1 -AAAAATTATA
92739979 AAAA
1 AAAA
92739983 CTTTAACTAG
Statistics
Matches: 74, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
8 6 0.08
9 17 0.23
10 30 0.41
11 20 0.27
12 1 0.01
ACGTcount: A:0.62, C:0.02, G:0.01, T:0.35
Consensus pattern (10 bp):
AAAAATTATA
Found at i:92740507 original size:10 final size:9
Alignment explanation
Indices: 92740470--92740575 Score: 69
Period size: 9 Copynumber: 11.7 Consensus size: 9
92740460 AATATTTTAA
92740470 ATAA-TTTT
1 ATAATTTTT
*
92740478 ATCATTTATT
1 ATAATTT-TT
*
92740488 ATAATATTT
1 ATAATTTTT
92740497 ATAAATTTTT
1 AT-AATTTTT
92740507 ATAATTTTAT
1 ATAATTTT-T
92740517 ATCAA-TTTT
1 AT-AATTTTT
*
92740526 ATTATTTTT
1 ATAATTTTT
*
92740535 -TAGATATTT
1 ATA-ATTTTT
92740544 AT-ATTTTAT
1 ATAATTTT-T
*
92740553 ATTATTTTT
1 ATAATTTTT
*
92740562 CT-ATTTTT
1 ATAATTTTT
92740570 ATAATT
1 ATAATT
92740576 ATTTTTACAG
Statistics
Matches: 77, Mismatches: 10, Indels: 21
0.71 0.09 0.19
Matches are distributed among these distances:
8 16 0.21
9 32 0.42
10 27 0.35
11 2 0.03
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (9 bp):
ATAATTTTT
Found at i:92740525 original size:11 final size:10
Alignment explanation
Indices: 92740454--92740527 Score: 52
Period size: 9 Copynumber: 7.7 Consensus size: 10
92740444 TACGTTTTTT
*
92740454 ATTTTAAAT-
1 ATTTTATATA
*
92740463 ATTTTAAATA
1 ATTTTATATA
*
92740473 A-TTT-TATC
1 ATTTTATATA
92740481 A-TTTATTATA
1 ATTTTA-TATA
92740491 ATATTTATA-A
1 AT-TTTATATA
92740501 ATTTT-TATA
1 ATTTTATATA
92740510 ATTTTATATCA
1 ATTTTATAT-A
92740521 ATTTTAT
1 ATTTTAT
92740528 TATTTTTTAG
Statistics
Matches: 54, Mismatches: 3, Indels: 14
0.76 0.04 0.20
Matches are distributed among these distances:
8 8 0.15
9 21 0.39
10 11 0.20
11 10 0.19
12 4 0.07
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (10 bp):
ATTTTATATA
Found at i:92740525 original size:19 final size:18
Alignment explanation
Indices: 92740470--92740573 Score: 70
Period size: 19 Copynumber: 5.7 Consensus size: 18
92740460 AATATTTTAA
*
92740470 ATAATTTTAT-CATTTATT
1 ATAATTTTATAAATTT-TT
92740488 ATAATATTTATAAATTTTT
1 ATAAT-TTTATAAATTTTT
92740507 ATAATTTTATATCAA-TTTT
1 ATAATTTTATA--AATTTTT
* * * *
92740526 ATTATTTTTTAGATATTT
1 ATAATTTTATAAATTTTT
*
92740544 AT-ATTTTATATTATTTTT
1 ATAATTTTATA-AATTTTT
* *
92740562 CTATTTTTATAA
1 ATAATTTTATAA
92740574 TTATTTTTAC
Statistics
Matches: 68, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
17 8 0.12
18 22 0.32
19 32 0.47
20 6 0.09
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (18 bp):
ATAATTTTATAAATTTTT
Found at i:92740579 original size:36 final size:38
Alignment explanation
Indices: 92740494--92740579 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 38
92740484 TATTATAATA
92740494 TTTATAAATT-TTTATAATTTTATATCAATTTTATTATT
1 TTTAT-AATTATTTATAATTTTATATCAATTTTATTATT
*
92740532 TTT-TAGA-TATTTAT-ATTTTATAT-TATTTT-TCTATT
1 TTTATA-ATTATTTATAATTTTATATCAATTTTAT-TATT
92740567 TTTATAATTATTT
1 TTTATAATTATTT
92740580 TTACAGGAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
34 1 0.02
35 13 0.31
36 18 0.43
37 7 0.17
38 3 0.07
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.66
Consensus pattern (38 bp):
TTTATAATTATTTATAATTTTATATCAATTTTATTATT
Found at i:92746750 original size:22 final size:22
Alignment explanation
Indices: 92746717--92746760 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
92746707 AATTGAATTC
*
92746717 AAATTTTAAAATATGAAATATA
1 AAATTTTAAAATATCAAATATA
*
92746739 AAATTATT-AAATTTCAAATATA
1 AAATT-TTAAAATATCAAATATA
92746761 CAAAAAGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (22 bp):
AAATTTTAAAATATCAAATATA
Found at i:92747974 original size:21 final size:21
Alignment explanation
Indices: 92747949--92748013 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
92747939 TAGCCTTCAG
92747949 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
** * *
92747970 GCTT-CAATTAGC-CTT-CGG
1 GCTTCCGTTTAGCACTTATGT
*
92747988 GCTTCCGTTCAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
92748009 GCTTC
1 GCTTC
92748014 AGTTAGACTT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
18 5 0.16
19 8 0.25
20 9 0.28
21 10 0.31
ACGTcount: A:0.14, C:0.28, G:0.20, T:0.38
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTATGT
Found at i:92747981 original size:39 final size:39
Alignment explanation
Indices: 92747931--92748031 Score: 166
Period size: 39 Copynumber: 2.6 Consensus size: 39
92747921 GCTCTGGTGA
* *
92747931 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTCAGCACTTATGT
*
92747970 GCTTCAATTAGCCTTCGGGCTTCCGTTCAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTCAGCACTTATGT
*
92748009 GCTTCAGTTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
92748032 AGATCACGAT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.15, C:0.27, G:0.22, T:0.37
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTCAGCACTTATGT
Found at i:92748032 original size:18 final size:18
Alignment explanation
Indices: 92747931--92748033 Score: 62
Period size: 18 Copynumber: 5.4 Consensus size: 18
92747921 GCTCTGGTGA
* *
92747931 GCTTCAGTTAGCCTTCAG
1 GCTTCAGTTAGACTTCGG
* * *
92747949 GCTTCCGTTTAGCACTTATGT
1 GCTTCAG-TTAG-ACTT-CGG
* *
92747970 GCTTCAATTAGCCTTCGG
1 GCTTCAGTTAGACTTCGG
* * *
92747988 GCTTCCGTTCAGCACTTATGT
1 GCTTCAGTT-AG-ACTT-CGG
92748009 GCTTCAGTTAGACTTCGG
1 GCTTCAGTTAGACTTCGG
92748027 GCTTCAG
1 GCTTCAG
92748034 ATCACGATGT
Statistics
Matches: 61, Mismatches: 18, Indels: 12
0.67 0.20 0.13
Matches are distributed among these distances:
18 22 0.36
19 13 0.21
20 12 0.20
21 14 0.23
ACGTcount: A:0.16, C:0.26, G:0.22, T:0.36
Consensus pattern (18 bp):
GCTTCAGTTAGACTTCGG
Found at i:92757345 original size:23 final size:24
Alignment explanation
Indices: 92757254--92757347 Score: 86
Period size: 24 Copynumber: 3.9 Consensus size: 24
92757244 TTTAATAACA
*
92757254 TTGAATTTTAGAAT-TTTTATATTT
1 TTGAATTTTA-AATATTTTTTATTT
92757278 TT-ATATTTTTAAAATATTTTTTATTT
1 TTGA-A-TTTT-AAATATTTTTTATTT
* *
92757304 TTGAATTTTAAAGAGTTTTTATTT
1 TTGAATTTTAAATATTTTTTATTT
* *
92757328 TT-CATTTTATATATTTTTTA
1 TTGAATTTTAAATATTTTTTA
92757348 CAAATTATAA
Statistics
Matches: 58, Mismatches: 7, Indels: 11
0.76 0.09 0.14
Matches are distributed among these distances:
23 15 0.26
24 18 0.31
25 11 0.19
26 13 0.22
27 1 0.02
ACGTcount: A:0.29, C:0.01, G:0.05, T:0.65
Consensus pattern (24 bp):
TTGAATTTTAAATATTTTTTATTT
Found at i:92764510 original size:88 final size:87
Alignment explanation
Indices: 92764266--92764520 Score: 237
Period size: 91 Copynumber: 2.8 Consensus size: 87
92764256 ATTTAAAAAA
* * * **
92764266 AAAAAGAAAAAGTAATTAAGCCCCTATTTTTTTTACATTCAATTGGGTACTTGAACTTTTAAAAT
1 AAAAA-AAAAAGTAATTAAACCCCTATTTTTTTCAC-TT-AATTGAGTACTTGAACTACTAAAAT
* *
92764331 GCATAAAAAAATGCCCTTAAACTTTTT
63 GCATAAAAAAAAGCCCTCAAAC--TTT
* * * *
92764358 CAAAAAAAAAGTAATTAAACTTCTTCT-TTTTTTTCACTTAATT-AGGTACTTGAACTGCCAAAA
1 AAAAAAAAAAGTAATTAAAC--C-CCTATTTTTTTCACTTAATTGA-GTACTTGAACTACTAAAA
*
92764421 TGCATAAAAAAAAGAACTCTCAAAC-TT
62 TGCATAAAAAAAAG--CCCTCAAACTTT
* * * *
92764448 AAAAAAAAAAGCAATTAAACCCCTATTTTTTTCACTTAATTGAGTATTTAAACTACTAAAATGTA
1 AAAAAAAAAAGTAATTAAACCCCTATTTTTTTCACTTAATTGAGTACTTGAACTACTAAAATGCA
*
92764513 TTAAAAAA
66 TAAAAAAA
92764521 GGCTAGCGAC
Statistics
Matches: 135, Mismatches: 20, Indels: 20
0.77 0.11 0.11
Matches are distributed among these distances:
87 2 0.01
88 41 0.30
89 1 0.01
90 20 0.15
91 46 0.34
92 6 0.04
93 17 0.13
94 2 0.01
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.34
Consensus pattern (87 bp):
AAAAAAAAAAGTAATTAAACCCCTATTTTTTTCACTTAATTGAGTACTTGAACTACTAAAATGCA
TAAAAAAAAGCCCTCAAACTTT
Found at i:92766524 original size:27 final size:27
Alignment explanation
Indices: 92766486--92766540 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
92766476 ATGGGAACAC
92766486 ACACCTTGAATAATGCATATAGCTCAA
1 ACACCTTGAATAATGCATATAGCTCAA
92766513 ACACCTTGAATAATGCATATAGCTCAA
1 ACACCTTGAATAATGCATATAGCTCAA
92766540 A
1 A
92766541 AGTTGTCTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.42, C:0.22, G:0.11, T:0.25
Consensus pattern (27 bp):
ACACCTTGAATAATGCATATAGCTCAA
Found at i:92768702 original size:33 final size:38
Alignment explanation
Indices: 92768665--92768743 Score: 96
Period size: 39 Copynumber: 2.1 Consensus size: 38
92768655 ATTGTATTAG
92768665 TTATATTA-TATTT-TT-T-AA-AATATTTATTTATTTT
1 TTATATTATTATTTGTTGTCAATAATATTT-TTTATTTT
92768699 TATATATTATTATTTGTTGTCAATAATATTTTTTATTTT
1 T-TATATTATTATTTGTTGTCAATAATATTTTTTATTTT
92768738 TATATA
1 T-TATA
92768744 AAATTTAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
34 1 0.03
35 7 0.18
36 5 0.13
37 2 0.05
38 1 0.03
39 16 0.41
40 7 0.18
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.65
Consensus pattern (38 bp):
TTATATTATTATTTGTTGTCAATAATATTTTTTATTTT
Found at i:92768711 original size:20 final size:20
Alignment explanation
Indices: 92768668--92768744 Score: 68
Period size: 20 Copynumber: 3.9 Consensus size: 20
92768658 GTATTAGTTA
*
92768668 TATTATATTTTT-TAAAATATT
1 TATT-TATTTTTATATAATA-T
*
92768689 TATTTATTTTTATATATTAT
1 TATTTATTTTTATATAATAT
* * *
92768709 TATTTGTTGTCA-ATAATAT
1 TATTTATTTTTATATAATAT
*
92768728 TTTTTATTTTTATATAA
1 TATTTATTTTTATATAA
92768745 AATTTAAATT
Statistics
Matches: 44, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
19 14 0.32
20 21 0.48
21 9 0.20
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (20 bp):
TATTTATTTTTATATAATAT
Found at i:92768799 original size:23 final size:22
Alignment explanation
Indices: 92768747--92768803 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
92768737 TTATATAAAA
*
92768747 TTTAAATTTATTATTATATTTT
1 TTTAAATTTTTTATTATATTTT
*
92768769 TTAAAAATATTTTTA-TATATTTCT
1 TT-TAAAT-TTTTTATTATATTT-T
92768793 TTTAAATTTTT
1 TTTAAATTTTT
92768804 AGAGTTAGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
22 6 0.21
23 15 0.52
24 8 0.28
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (22 bp):
TTTAAATTTTTTATTATATTTT
Found at i:92776137 original size:37 final size:38
Alignment explanation
Indices: 92776052--92776213 Score: 211
Period size: 38 Copynumber: 4.2 Consensus size: 38
92776042 TCGAAATATG
92776052 ATATCCGGGCTTAAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATCCGGG-TT-AAATCCCGCAGGCTTCGTGCTGGTAAT
* *
92776092 ATAACCGGGTTAAATCCCGCAGGC-TC-TGTTTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTG-CTGGTAAT
*
92776129 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* * * *
92776167 ATATCCGGGTTAAATCTCGCAGGCCTAGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
*
92776205 ATATTCGGG
1 ATATCCGGG
92776214 CCTTTGAGCC
Statistics
Matches: 110, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
36 2 0.02
37 32 0.29
38 64 0.58
39 4 0.04
40 8 0.07
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
Found at i:92778147 original size:54 final size:54
Alignment explanation
Indices: 92778070--92778178 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
92778060 GGGTATTCAA
92778070 ATCATTTCATTTTGATACAGAAACAGTAACAATTTTCATCATTTCATTTATCAT
1 ATCATTTCATTTTGATACAGAAACAGTAACAATTTTCATCATTTCATTTATCAT
92778124 ATCATTTCATTTTGATACAGAAACAGTAACAATTTTCATCATTTCATTTATCAT
1 ATCATTTCATTTTGATACAGAAACAGTAACAATTTTCATCATTTCATTTATCAT
92778178 A
1 A
92778179 CATGCTAACA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.42
Consensus pattern (54 bp):
ATCATTTCATTTTGATACAGAAACAGTAACAATTTTCATCATTTCATTTATCAT
Found at i:92781696 original size:138 final size:137
Alignment explanation
Indices: 92781434--92781700 Score: 320
Period size: 138 Copynumber: 1.9 Consensus size: 137
92781424 ATCAAGAGCG
92781434 AAGCTCCAATAGTCATACTAAGGCTCAAAGGAAAAAAGCCGCAACCTCCAACACAATTAGCGAAA
1 AAGCTCCAATAGTCATACTAAGGCTCAAAGGAAAAAAGCCGCAACCTCCAACACAATTAGCGAAA
* * * * * * * *
92781499 ACAAAGCTCCCAGTTGTCAAACTAAGGTTTGCAGGCAAAGAGCCACAGCCTCTACCACAATTAGT
66 ACAAAGCTCCCAGCTGTCAAACTAAAGCTTACAAGCAAAGAGCCACAGCATCCAACACAATTAGT
92781564 GAGAGTA
131 GAGAGTA
* * ** * * *
92781571 AAGCTCCTAATTGTCATACTAAGGCTCACAGGCGAAGAGCCGCAGCCTCCAACACAATTAGCGAG
1 AAGCTCC-AATAGTCATACTAAGGCTCAAAGGAAAAAAGCCGCAACCTCCAACACAATTAGCGAA
** * * * *
92781636 AGTAAAGCTCTCAGCTGTCATACTAAAGCTTACAAG-AGAAGAGCCGCAGTATCCAACACAATTA
65 AACAAAGCTCCCAGCTGTCAAACTAAAGCTTACAAGCA-AAGAGCCACAGCATCCAACACAATTA
92781700 G
129 G
92781701 CAGAAGCAAA
Statistics
Matches: 107, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
137 8 0.07
138 99 0.93
ACGTcount: A:0.37, C:0.26, G:0.19, T:0.18
Consensus pattern (137 bp):
AAGCTCCAATAGTCATACTAAGGCTCAAAGGAAAAAAGCCGCAACCTCCAACACAATTAGCGAAA
ACAAAGCTCCCAGCTGTCAAACTAAAGCTTACAAGCAAAGAGCCACAGCATCCAACACAATTAGT
GAGAGTA
Found at i:92781720 original size:69 final size:69
Alignment explanation
Indices: 92781276--92781731 Score: 274
Period size: 69 Copynumber: 6.6 Consensus size: 69
92781266 CCACAGATTT
* * * * * * * * *
92781276 CAACACAGTCAGCGAGAGCAAAGCTTCCAGCTGTCATAATAAGGCTTGCAGGCGAAAAGCCGTAG
1 CAACACAATTAGCGAGAGCAAAGCTCCCAGCTGTCATACTAAAGCTTACAGGAGAAGAGCCGCAG
92781341 CCTC
66 CCTC
** * * * * * * * * * ** * *
92781345 CAACGTAGTTAGCAAAAGTAAAGCTCCTAACTATCACACTAAATCTTGTAGG-GAAAGAACTGCA
1 CAACACAATTAGCGAGAGCAAAGCTCCCAGCTGTCATACTAAAGCTTACAGGAG-AAGAGCCGCA
*
92781409 ACCTC
65 GCCTC
* * * * * * * * * * * *
92781414 CATCATAGTTATCAAGAGCGAAGCT-CCA-ATAGTCATACTAAGGCTCAAAGGAAAAAAGCCGCA
1 CAACACAATTAGCGAGAGCAAAGCTCCCAGCT-GTCATACTAAAGCTTACAGGAGAAGAGCCGCA
*
92781477 ACCTC
65 GCCTC
* * * * * * * *
92781482 CAACACAATTAGCGAAAACAAAGCTCCCAGTTGTCAAACTAAGGTTTGCAGGCA-AAGAGCCACA
1 CAACACAATTAGCGAGAGCAAAGCTCCCAGCTGTCATACTAAAGCTTACAGG-AGAAGAGCCGCA
92781546 GCCTC
65 GCCTC
* * * * * ** * * *
92781551 TACCACAATTAGTGAGAGTAAAGCTCCTAATTGTCATACTAAGGCTCACAGGCGAAGAGCCGCAG
1 CAACACAATTAGCGAGAGCAAAGCTCCCAGCTGTCATACTAAAGCTTACAGGAGAAGAGCCGCAG
92781616 CCTC
66 CCTC
* * *
92781620 CAACACAATTAGCGAGAGTAAAGCTCTCAGCTGTCATACTAAAGCTTACAAGAGAAGAGCCGCAG
1 CAACACAATTAGCGAGAGCAAAGCTCCCAGCTGTCATACTAAAGCTTACAGGAGAAGAGCCGCAG
**
92781685 TATC
66 CCTC
* *
92781689 CAACACAATTAGC-AGAAGCAAAGCTCCCAGCTGCCATATTAAA
1 CAACACAATTAGCGAG-AGCAAAGCTCCCAGCTGTCATACTAAA
92781732 ACTAGTAGGT
Statistics
Matches: 292, Mismatches: 87, Indels: 16
0.74 0.22 0.04
Matches are distributed among these distances:
67 1 0.00
68 47 0.16
69 242 0.83
70 2 0.01
ACGTcount: A:0.37, C:0.26, G:0.19, T:0.18
Consensus pattern (69 bp):
CAACACAATTAGCGAGAGCAAAGCTCCCAGCTGTCATACTAAAGCTTACAGGAGAAGAGCCGCAG
CCTC
Found at i:92781932 original size:57 final size:57
Alignment explanation
Indices: 92781804--92781950 Score: 170
Period size: 57 Copynumber: 2.6 Consensus size: 57
92781794 ACAATCCTCT
* * * *
92781804 AAAATTTTCTAAGAATAAAAAAGTCCGCAGAGTTACATTCCCAACTTGTTACTTTAG
1 AAAATTTTCTAAGTATAAAAAAGTTCGCAGAGTCACATTCCCAACTTATTACTTTAG
** * * *
92781861 AAAAACTTCTAAGTATAAAAAAGTTCGCAGAGTCACATTCCCAGCTTATTATTTTTG
1 AAAATTTTCTAAGTATAAAAAAGTTCGCAGAGTCACATTCCCAACTTATTACTTTAG
* * * *
92781918 AAAGTTTTCCAAGTATAAAATAGCTCGCA-AGTC
1 AAAATTTTCTAAGTATAAAAAAGTTCGCAGAGTC
92781951 CAAATTTGTA
Statistics
Matches: 75, Mismatches: 15, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
56 4 0.05
57 71 0.95
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (57 bp):
AAAATTTTCTAAGTATAAAAAAGTTCGCAGAGTCACATTCCCAACTTATTACTTTAG
Found at i:92797886 original size:27 final size:27
Alignment explanation
Indices: 92797848--92797905 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 27
92797838 CGAGGGAAAT
92797848 AAAAGTTTT-GGGGGAAAACAAAAGTAA
1 AAAAGTTTTGGGGGGAAAACAAAAG-AA
* *
92797875 AAATGTTTTGGGGGGAAAATAAAAGAA
1 AAAAGTTTTGGGGGGAAAACAAAAGAA
92797902 AAAA
1 AAAA
92797906 AAATGTTTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 13 0.48
28 14 0.52
ACGTcount: A:0.53, C:0.02, G:0.26, T:0.19
Consensus pattern (27 bp):
AAAAGTTTTGGGGGGAAAACAAAAGAA
Found at i:92798979 original size:50 final size:50
Alignment explanation
Indices: 92798921--92799017 Score: 149
Period size: 50 Copynumber: 1.9 Consensus size: 50
92798911 AACACAACAA
* *
92798921 AGGCTTTAGCCTCAGCATAAATAGAGCATTATGACACGTTAACAATTAGT
1 AGGCTTTAGACTCAGCATAAATAGAACATTATGACACGTTAACAATTAGT
* * *
92798971 AGGCTTTAGACTTATCATAAATAGAACATTATGACATGTTAACAATT
1 AGGCTTTAGACTCAGCATAAATAGAACATTATGACACGTTAACAATT
92799018 GACATTGTCA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (50 bp):
AGGCTTTAGACTCAGCATAAATAGAACATTATGACACGTTAACAATTAGT
Found at i:92801171 original size:53 final size:53
Alignment explanation
Indices: 92801090--92801190 Score: 125
Period size: 53 Copynumber: 1.9 Consensus size: 53
92801080 AATTTAGAAT
* *
92801090 AAATATTATATATATATAATAGTGTAAAATAACA-AAGTATATATAAAAACTCCA
1 AAATAATATATATATATAATAGTGTAAAATAA-ATAA-TACATATAAAAACTCCA
* * *
92801144 AAATAATA-ATATGTATGATAGTTTAAAATAAATAATACATATAAAAA
1 AAATAATATATATATATAATAGTGTAAAATAAATAATACATATAAAAA
92801191 TTAAAAAGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
52 12 0.29
53 22 0.54
54 7 0.17
ACGTcount: A:0.57, C:0.05, G:0.06, T:0.32
Consensus pattern (53 bp):
AAATAATATATATATATAATAGTGTAAAATAAATAATACATATAAAAACTCCA
Found at i:92803030 original size:45 final size:45
Alignment explanation
Indices: 92802868--92803285 Score: 162
Period size: 44 Copynumber: 9.7 Consensus size: 45
92802858 TTTCTTTCAG
* * *
92802868 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAAC
1 TCTGCCCCACTGCAACTTCAGAGAGATAAGACTTGTAGCTTCAAC
* * * *
92802913 T-TGCCCCACTGCAATTTTAGAGGGATAAGGACTCGTAGCTTCAAC
1 TCTGCCCCACTGCAACTTCAGAGAGATAA-GACTTGTAGCTTCAAC
* * * * * *
92802958 -CTACCCCACTACAACTTCAG-GGGATAAGATTTATAGCTTTAAC
1 TCTGCCCCACTGCAACTTCAGAGAGATAAGACTTGTAGCTTCAAC
* * * * * *
92803001 TCTGCTCTACTGCAATTTCAGAGAGATAAGATTTGCTATCTTCGA-
1 TCTGCCCCACTGCAACTTCAGAGAGATAAGACTTG-TAGCTTCAAC
* * * *
92803046 TCCGCTCCACTGCAA--T-----AG----GACTCGTAACTTCAAC
1 TCTGCCCCACTGCAACTTCAGAGAGATAAGACTTGTAGCTTCAAC
* * * * *
92803080 -CTGCCCTACTGCAACTTCAGGGAGGTAAGATTTGCTATCTTCAA-
1 TCTGCCCCACTGCAACTTCAGAGAGATAAGACTTG-TAGCTTCAAC
* * * * * * * * *
92803124 TCCGCTCCACTACAAATTCAGGGAGATAGGACTCGTAACTTTAAC
1 TCTGCCCCACTGCAACTTCAGAGAGATAAGACTTGTAGCTTCAAC
* * * * *
92803169 T-TGTCCCACTACAACTTCA-AGGGGATAAGA-TTGTTATCTTC-AG
1 TCTGCCCCACTGCAACTTCAGA-GAGATAAGACTTG-TAGCTTCAAC
* * * * ** *
92803212 TCTACTCTACTGTAACTTCAG-GAAGATAAGACTTGTAATTTCAGC
1 TCTGCCCCACTGCAACTTCAGAG-AGATAAGACTTGTAGCTTCAAC
* *
92803257 -CTGCTCCACTGCAACTTCAGGGAGATAAG
1 TCTGCCCCACTGCAACTTCAGAGAGATAAG
92803286 GTTTGTTTTG
Statistics
Matches: 272, Mismatches: 73, Indels: 57
0.68 0.18 0.14
Matches are distributed among these distances:
33 18 0.07
34 4 0.01
35 1 0.00
38 2 0.01
40 2 0.01
43 18 0.07
44 129 0.47
45 92 0.34
46 6 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (45 bp):
TCTGCCCCACTGCAACTTCAGAGAGATAAGACTTGTAGCTTCAAC
Found at i:92803653 original size:88 final size:87
Alignment explanation
Indices: 92803525--92803829 Score: 389
Period size: 88 Copynumber: 3.5 Consensus size: 87
92803515 GATTAGCTTT
* * * * * *
92803525 CTTCAATCTACTCCGCTGCAACTTTAGGGAGATAAG-ATTGTGGCTTCGAGCCGCTCCAATGCTA
1 CTTCGATCTACTCCGCTGGAACTTCAAGGAGATAAGAATTGTGGCTTCGAACCGCTCCAATGCCA
*
92803589 TTTCATGGAAAAGGGATTTGTAG
66 TTTCA-GGAAAAGAGATTTGTAG
* * * *
92803612 CTTCGATCTATTCCGCTGGAACTTCAATGAAATACGAATTGTGGCTTCGAACCGCTCCAATGCCA
1 CTTCGATCTACTCCGCTGGAACTTCAAGGAGATAAGAATTGTGGCTTCGAACCGCTCCAATGCCA
* *
92803677 TTTTAGGAAGAAGAAATTTGTAG
66 TTTCAGGAA-AAGAGATTTGTAG
* ** *
92803700 CTTCGATCTACTCCACTAAAACTTCAAGGAGATATA-AATTGTGGCTTCGAACCACTCCAATGCC
1 CTTCGATCTACTCCGCTGGAACTTCAAGGAGATA-AGAATTGTGGCTTCGAACCGCTCCAATGCC
92803764 ATTTCAGGGAAAAGAGATTTGTAG
65 ATTTCA-GGAAAAGAGATTTGTAG
* *
92803788 CTTCGATCTACTCTGCTGGAACTTTAAGGAGATAAGAATTGT
1 CTTCGATCTACTCCGCTGGAACTTCAAGGAGATAAGAATTGT
92803830 TTATTTCAAC
Statistics
Matches: 185, Mismatches: 28, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
87 33 0.18
88 148 0.80
89 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (87 bp):
CTTCGATCTACTCCGCTGGAACTTCAAGGAGATAAGAATTGTGGCTTCGAACCGCTCCAATGCCA
TTTCAGGAAAAGAGATTTGTAG
Found at i:92803703 original size:44 final size:44
Alignment explanation
Indices: 92803650--92803793 Score: 114
Period size: 44 Copynumber: 3.3 Consensus size: 44
92803640 GAAATACGAA
* * *
92803650 TTGTGGCTTCGAACCGCTCCAATGCCATTTTAGGAAGAAGAAAT
1 TTGTAGCTTCGAACCACTCCAATGCCATTTAAGGAAGAAGAAAT
* * * *** * *
92803694 TTGTAGCTTCGATCTACTCCACTAAAACTTCAAGG-AGATATAAA-
1 TTGTAGCTTCGAACCACTCCAATGCCA-TTTAAGGAAGA-AGAAAT
* * *
92803738 TTGTGGCTTCGAACCACTCCAATGCCATTTCAGGGAA-AAGAGAT
1 TTGTAGCTTCGAACCACTCCAATGCCATTT-AAGGAAGAAGAAAT
92803782 TTGTAGCTTCGA
1 TTGTAGCTTCGA
92803794 TCTACTCTGC
Statistics
Matches: 72, Mismatches: 23, Indels: 10
0.69 0.22 0.10
Matches are distributed among these distances:
43 5 0.07
44 57 0.79
45 10 0.14
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (44 bp):
TTGTAGCTTCGAACCACTCCAATGCCATTTAAGGAAGAAGAAAT
Found at i:92804007 original size:130 final size:130
Alignment explanation
Indices: 92803847--92804665 Score: 980
Period size: 130 Copynumber: 6.3 Consensus size: 130
92803837 AACCCGCTCT
* *
92803847 ACTACTAC-TAGGGAGATAGGATGGTAGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGAT
1 ACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGAT
***** * * * * * *
92803911 TTGTTATATTTGATCTGCTCCACTACTGCTTAAGGAGACAGGACCTACAATCTTTAGCCTACTCC
66 TCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAGCCTACTCC
* *
92803976 ACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTATTGCTTAGGGAGACAAGAT
1 ACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGAT
* * ** * *
92804041 TCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATATTTAGTCTACTCC
66 TCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAGCCTACTCC
* * *
92804106 ACTACTGCTTAGGGAGATAGGATGGTGACTTAAATCCGCTCCACTACTGTTTAGGGAGACAAGAT
1 ACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGAT
* * **
92804171 TCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTTAGCCTACTCC
66 TCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAGCCTACTCC
*
92804236 ACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTACTTAGGGAGACAAGAT
1 ACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGAT
* * * * * * *
92804301 TCACCGTCTTCGATCTGCTCTACTATTGCTTAGGGAGATAAAATCTACAATTTTTAGCTTGCTCT
66 TCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAGCCTACTCC
* * * * * * * * *
92804366 ACTGCTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTTCC-CTATTACCTCT-GGAAG-TA
1 ACTACTGCTTAGGGAGA-TAGGATGGTGGCTTAAATCTGC-TCCACTACT-GCT-TAGGGAGACA
* * * * ** *
92804428 AGATTCACCATCTTCGATCTGCTCTACTATTACTTAGGGAGATAAGATCTGTAATCTTCAGCCTA
62 AGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAGCCTA
92804493 CTCC
127 CTCC
* *
92804497 ACTACTACTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTACTTAGGGAGACAAGAT
1 ACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGAT
* * * * * *
92804562 TCACTGTCTTCGATTTGCTCTACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTGCTCT
66 TCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAGCCTACTCC
* * * * *
92804627 ACTGCTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTG
1 ACTACTGCTTAGGGAGA-TAGGATGGTGGCTTAAATCTG
92804666 TTTCCGTACT
Statistics
Matches: 596, Mismatches: 85, Indels: 16
0.86 0.12 0.02
Matches are distributed among these distances:
128 1 0.00
129 16 0.03
130 454 0.76
131 115 0.19
132 9 0.02
133 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (130 bp):
ACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGAT
TCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAGCCTACTCC
Found at i:92804273 original size:86 final size:86
Alignment explanation
Indices: 92803923--92804301 Score: 300
Period size: 86 Copynumber: 4.4 Consensus size: 86
92803913 GTTATATTTG
* * * *
92803923 ATCTGCTCCACTACTGCTTAAGGAGACAGGACCTACAATCTTTAGCCTACTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGA-TTGCAATCTTTAGCCTACTCCACTACTGCTTAG
*
92803988 GGAGATAGGAT-GGTGGCTTAA
65 GGAGATAAGATCGGTGGCTTAA
* * ** * * *
92804009 ATCTACTCCACTATTGCTTAGGGAGACAAGATTCGCCGTC-TTCGATCTGCTCCACTACTGCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATT-GCAATCTTTAG-CCTACTCCACTACTGCTTA
* * *** *
92804073 GAGAGATAAGATCTGTAATATTTA
64 GGGAGATAAGATCGGT-GGCTTAA
* * * * * ** * * * *
92804097 GTCTACTCCACTACTGCTTAGGGAGATAGGATGGTGA-CTTAAATCC-GCTCCACTACTGTTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATTGCAATCTT-TAGCCTACTCCACTACTGCTTAG
* ** * **
92804160 GGAGACAAGATTCGCCGTCTTCG
65 GGAGATAAGA-TCGGTGGCTTAA
* * *
92804183 ATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTTAGCCTACTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGAT-TGCAATCTTTAGCCTACTCCACTACTGCTTAG
*
92804248 GGAGATAGGAT-GGTGGCTTAA
65 GGAGATAAGATCGGTGGCTTAA
*
92804269 ATCTGCTCCACTACTACTTAGGGAGACAAGATT
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATT
92804302 CACCGTCTTC
Statistics
Matches: 223, Mismatches: 60, Indels: 21
0.73 0.20 0.07
Matches are distributed among these distances:
85 5 0.02
86 147 0.66
87 14 0.06
88 57 0.26
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (86 bp):
ATCTGCTCCACTACTGCTTAGGGAGACAAGATTGCAATCTTTAGCCTACTCCACTACTGCTTAGG
GAGATAAGATCGGTGGCTTAA
Found at i:92804331 original size:86 final size:87
Alignment explanation
Indices: 92803972--92804341 Score: 295
Period size: 86 Copynumber: 4.3 Consensus size: 87
92803962 CTTTAGCCTA
* *
92803972 CTCCACTACTGCTTAGGGAGATAGGAT-GGTGGCTTAAATCTACTCCACTATTGCTTAGGGAGAC
1 CTCCACTACTGCTTAGGGAGATAAGATCGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGAC
*
92804036 AAGATTCGCCGTCTTCGATCTG
66 AAGATTCACCGTCTTCGATCTG
* * *** * *
92804058 CTCCACTACTGCTTAGAGAGATAAGATCTGTAATATTTAGTCTACTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGATCGGT-GGCTTAAATCTACTCCACTACTGCTTAGGGAGA
* * *** * ** *
92804123 TAGGA-T-GGTGACTTAAATCCG
65 CAAGATTCACCGTCTTCGATCTG
* * ** * ** * *
92804144 CTCCACTACTGTTTAGGGAGACAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGA-TCGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGA
* * * * * *
92804209 TAAGATCTGTA--ATCTT-TAGCCTA
65 CAAGAT-T-CACCGTCTTCGA-TCTG
* * *
92804232 CTCCACTACTGCTTAGGGAGATAGGAT-GGTGGCTTAAATCTGCTCCACTACTACTTAGGGAGAC
1 CTCCACTACTGCTTAGGGAGATAAGATCGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGAC
92804296 AAGATTCACCGTCTTCGATCTG
66 AAGATTCACCGTCTTCGATCTG
* *
92804318 CTCTACTATTGCTTAGGGAGATAA
1 CTCCACTACTGCTTAGGGAGATAA
92804342 AATCTACAAT
Statistics
Matches: 216, Mismatches: 57, Indels: 22
0.73 0.19 0.07
Matches are distributed among these distances:
84 1 0.00
85 1 0.00
86 148 0.69
87 8 0.04
88 58 0.27
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (87 bp):
CTCCACTACTGCTTAGGGAGATAAGATCGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGAC
AAGATTCACCGTCTTCGATCTG
Found at i:92804333 original size:44 final size:44
Alignment explanation
Indices: 92803874--92804605 Score: 284
Period size: 44 Copynumber: 16.8 Consensus size: 44
92803864 AGGATGGTAG
* * * ***
92803874 CTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGTTAT
1 CTTAGATCTGCTCCACTACTGCTTAGGGAGATAAGATTCGCCGT
* * * * * * * **
92803918 ATTTGATCTGCTCCACTACTGCTTAAGGAGACAGGA-CCTACAAT
1 CTTAGATCTGCTCCACTACTGCTTAGGGAGATAAGATTC-GCCGT
* * * ** *
92803962 CTTTAG-CCTACTCCACTACTGCTTAGGGAGATAGGA-T-GGTGG
1 C-TTAGATCTGCTCCACTACTGCTTAGGGAGATAAGATTCGCCGT
* * * *
92804004 CTTAAATCTACTCCACTATTGCTTAGGGAGACAAGATTCGCCGT
1 CTTAGATCTGCTCCACTACTGCTTAGGGAGATAAGATTCGCCGT
* * ***
92804048 CTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGA-TCTGTAAT
1 CTTAGATCTGCTCCACTACTGCTTAGGGAGATAAGATTC-GCCGT
* * * ** *
92804092 ATTTAG-TCTACTCCACTACTGCTTAGGGAGATAGGA-T-GGTGA
1 -CTTAGATCTGCTCCACTACTGCTTAGGGAGATAAGATTCGCCGT
* * * *
92804134 CTTAAATCCGCTCCACTACTGTTTAGGGAGACAAGATTCGCCGT
1 CTTAGATCTGCTCCACTACTGCTTAGGGAGATAAGATTCGCCGT
* * ***
92804178 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGA-TCTGTAAT
1 CTTAGATCTGCTCCACTACTGCTTAGGGAGATAAGATTC-GCCGT
* * * ** *
92804222 CTTTAG-CCTACTCCACTACTGCTTAGGGAGATAGGA-T-GGTGG
1 C-TTAGATCTGCTCCACTACTGCTTAGGGAGATAAGATTCGCCGT
* * * *
92804264 CTTAAATCTGCTCCACTACTACTTAGGGAGACAAGATTCACCGT
1 CTTAGATCTGCTCCACTACTGCTTAGGGAGATAAGATTCGCCGT
* * * * ***
92804308 CTTCGATCTGCTCTACTATTGCTTAGGGAGATAAAATCTAC-AATT
1 CTTAGATCTGCTCCACTACTGCTTAGGGAGATAAGAT-T-CGCCGT
* * * * * * ** * * *
92804353 TTTAGCT-TGCTCTACTGCTGCTCAGGGAGACAAGGCTAG-TGG
1 CTTAGATCTGCTCCACTACTGCTTAGGGAGATAAGATTCGCCGT
* * * * * *
92804395 CTTAAATCTGCTTCC-CTATTACCTCT-GGAAG-TAAGATTCACCAT
1 CTTAGATCTGC-TCCACTACT-GCT-TAGGGAGATAAGATTCGCCGT
* * * * ***
92804439 CTTCGATCTGCTCTACTATTACTTAGGGAGATAAGA-TCTGTAAT
1 CTTAGATCTGCTCCACTACTGCTTAGGGAGATAAGATTC-GCCGT
* * * * ** *
92804483 CTTCAG-CCTACTCCACTACTACTTAGGGAGATAGGA-T-GGTGG
1 CTT-AGATCTGCTCCACTACTGCTTAGGGAGATAAGATTCGCCGT
* * * * *
92804525 CTTAAATCTGCTCCACTACTACTTAGGGAGACAAGATTCACTGT
1 CTTAGATCTGCTCCACTACTGCTTAGGGAGATAAGATTCGCCGT
* * *
92804569 CTTCGATTTGCTCTACTACTGCTTAGGGAGATAAGAT
1 CTTAGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
92804606 CTACAATCTT
Statistics
Matches: 498, Mismatches: 159, Indels: 62
0.69 0.22 0.09
Matches are distributed among these distances:
41 10 0.02
42 115 0.23
43 29 0.06
44 327 0.66
45 16 0.03
46 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.31
Consensus pattern (44 bp):
CTTAGATCTGCTCCACTACTGCTTAGGGAGATAAGATTCGCCGT
Found at i:92804532 original size:261 final size:262
Alignment explanation
Indices: 92803922--92804742 Score: 1098
Period size: 261 Copynumber: 3.1 Consensus size: 262
92803912 TGTTATATTT
* * * * * * **
92803922 GATCTGCTCCACTACTGCTTAAGGAGACAGGACCTACAATCTTTAGCCTACTCCACTACTGCTTA
1 GATCTGCTCCACTATTACTTAGGGAGATAAGATCTGTAATCTTTAGCCTACTCCACTACTGCTTA
* * * *
92803987 GGGAGATAGGATGGTGGCTTAAATCTACTCCACTATTGCTTAGGGAGACAAGATTCGCCGTCTTC
66 GGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTACTTAGGGAGACAAGATTCACCGTCTTC
* * ** * * * *
92804052 GATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATATTTAG-TCTACTCCACTACTGCTT
131 GATCTGCTCTACTACTGCTTAGGGAGATAAGATCTACAATATTTAGCT-TGCTCTACTGCTGCTC
* * * * * * * * * *
92804116 AGGGAGA-TAGGATGGTGACTTAAATCCGC-T-CC-ACTACTGTTTAGGGAGACAAGATTCGCCG
195 AGGGAGACAAGGCTAGTGGCTTAAATCTGCTTCCCTACTAC-CTCT-GGAAGATAAGATTCGCCA
92804177 TCTTC
258 TCTTC
*
92804182 GATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTTAGCCTACTCCACTACTGCTTA
1 GATCTGCTCCACTATTACTTAGGGAGATAAGATCTGTAATCTTTAGCCTACTCCACTACTGCTTA
92804247 GGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTACTTAGGGAGACAAGATTCACCGTCTTC
66 GGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTACTTAGGGAGACAAGATTCACCGTCTTC
* * *
92804312 GATCTGCTCTACTATTGCTTAGGGAGATAAAATCTACAATTTTTAGCTTGCTCTACTGCTGCTCA
131 GATCTGCTCTACTACTGCTTAGGGAGATAAGATCTACAATATTTAGCTTGCTCTACTGCTGCTCA
* *
92804377 GGGAGACAAGGCTAGTGGCTTAAATCTGCTTCCCTATTACCTCTGGAAG-TAAGATTCACCATCT
196 GGGAGACAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCTGGAAGATAAGATTCGCCATCT
92804441 TC
261 TC
* * *
92804443 GATCTGCTCTACTATTACTTAGGGAGATAAGATCTGTAATCTTCAGCCTACTCCACTACTACTTA
1 GATCTGCTCCACTATTACTTAGGGAGATAAGATCTGTAATCTTTAGCCTACTCCACTACTGCTTA
*
92804508 GGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTACTTAGGGAGACAAGATTCACTGTCTTC
66 GGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTACTTAGGGAGACAAGATTCACCGTCTTC
* * * *
92804573 GATTTGCTCTACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTGCTCTACTGCTGCTCA
131 GATCTGCTCTACTACTGCTTAGGGAGATAAGATCTACAATATTTAGCTTGCTCTACTGCTGCTCA
* * *
92804638 GGGAGACAAGGCTAGTGGCTTAAATCTGTTTCCGTACTACCTCTGAAAGATAAGATTCGCCATCT
196 GGGAGACAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCTGGAAGATAAGATTCGCCATCT
92804703 TC
261 TC
* * *
92804705 GATCTGCTCCATTGA-TACCTCATGGAGATAAGATCTGT
1 GATCTGCTCCACT-ATTA-CTTAGGGAGATAAGATCTGT
92804743 GAATTTACCG
Statistics
Matches: 499, Mismatches: 54, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
260 177 0.35
261 261 0.52
262 34 0.07
263 23 0.05
264 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (262 bp):
GATCTGCTCCACTATTACTTAGGGAGATAAGATCTGTAATCTTTAGCCTACTCCACTACTGCTTA
GGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTACTTAGGGAGACAAGATTCACCGTCTTC
GATCTGCTCTACTACTGCTTAGGGAGATAAGATCTACAATATTTAGCTTGCTCTACTGCTGCTCA
GGGAGACAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCTGGAAGATAAGATTCGCCATCT
TC
Found at i:92804616 original size:44 final size:44
Alignment explanation
Indices: 92804532--92804647 Score: 119
Period size: 44 Copynumber: 2.6 Consensus size: 44
92804522 TGGCTTAAAT
* * ** *
92804532 CTGCTCCACTACTACTTAGGGAGACAAGATTCACTGTCTTC-GAT
1 CTGCTCTACTACTGCTTAGGGAGACAAGATTCACAATCTTCAG-C
* *
92804576 TTGCTCTACTACTGCTTAGGGAGATAAGA-TCTACAATCTTCAGC
1 CTGCTCTACTACTGCTTAGGGAGACAAGATTC-ACAATCTTCAGC
* *
92804620 CTGCTCTACTGCTGCTCAGGGAGACAAG
1 CTGCTCTACTACTGCTTAGGGAGACAAG
92804648 GCTAGTGGCT
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
43 2 0.03
44 56 0.95
45 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (44 bp):
CTGCTCTACTACTGCTTAGGGAGACAAGATTCACAATCTTCAGC
Found at i:92805970 original size:19 final size:19
Alignment explanation
Indices: 92805948--92805990 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
92805938 CAACCTTTCC
* *
92805948 TTTTCTTTTCTTTTTTCTTT
1 TTTTATTTT-TTTTCTCTTT
92805968 TTTTATTTTTTTTCTCTTT
1 TTTTATTTTTTTTCTCTTT
92805987 TTTT
1 TTTT
92805991 TGTGAAGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.86
Consensus pattern (19 bp):
TTTTATTTTTTTTCTCTTT
Found at i:92811493 original size:31 final size:28
Alignment explanation
Indices: 92811427--92811507 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
92811417 AATATGAAGA
* *
92811427 AATTTAACATAAATAATATATGAAAAAT
1 AATTTAAAATAAATAATATATGAAAAAC
*
92811455 AAGTTTAAAATAAATAATATATATATATAAAC
1 AA-TTTAAAATAAATAATATAT-GA-A-AAAC
* *
92811487 AATTTAATATAAGTAATATAT
1 AATTTAAAATAAATAATATAT
92811508 CTGAAATCCT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
28 2 0.05
29 18 0.41
30 1 0.02
31 18 0.41
32 5 0.11
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (28 bp):
AATTTAAAATAAATAATATATGAAAAAC
Found at i:92811724 original size:25 final size:25
Alignment explanation
Indices: 92811695--92811757 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
92811685 TGTATGATAG
92811695 TTTAAAATAAACAATACATATTAAAA
1 TTTAAAATAAACAATA-ATATTAAAA
* *
92811721 -TTAAAA-AGAATAATAGTATTAAAA
1 TTTAAAATA-AACAATAATATTAAAA
92811745 TTGTAAAATAAAC
1 TT-TAAAATAAAC
92811758 TTAAAACACA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
24 9 0.30
25 13 0.43
26 7 0.23
27 1 0.03
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (25 bp):
TTTAAAATAAACAATAATATTAAAA
Found at i:92813147 original size:17 final size:17
Alignment explanation
Indices: 92813122--92813163 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
92813112 ACATCAAGTT
* *
92813122 TATTTATTTCATGAAAA
1 TATTAATTTAATGAAAA
92813139 TATTAATTTTAATGAAAA
1 TATTAA-TTTAATGAAAA
92813157 TA-TAATT
1 TATTAATT
92813164 AAAATATTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 2 0.09
17 8 0.36
18 12 0.55
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (17 bp):
TATTAATTTAATGAAAA
Found at i:92814704 original size:12 final size:12
Alignment explanation
Indices: 92814671--92814708 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
92814661 TTCAAAATTT
*
92814671 ATATTTTTTAAA
1 ATATTTTTAAAA
*
92814683 A-ATTTATAAAA
1 ATATTTTTAAAA
92814694 ATATTTTTAAAA
1 ATATTTTTAAAA
92814706 ATA
1 ATA
92814709 AAGAAAGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
11 9 0.41
12 13 0.59
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
ATATTTTTAAAA
Found at i:92818651 original size:46 final size:46
Alignment explanation
Indices: 92818456--92818760 Score: 214
Period size: 46 Copynumber: 6.5 Consensus size: 46
92818446 GGCCAACGCG
* * *
92818456 ATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCG-TGCCGATGCC
1 ATGTCCCAGACAT-GTCTTACACTGGCTCT--CATCT-CGAGGCCGATG-C
* * * * **
92818506 ATGTCCTAGACATGGTCTTACACTGACACCTCTAT-ACG-TTCCGATGCC
1 ATGTCCCAGACAT-GTCTTACACTGGC-TCTC-ATCTCGAGGCCGATG-C
* * * *
92818554 ATGT-CCAGACATGGTCTTACACT-G-ACACATTTC-ATAGCCGATGC
1 ATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCGA-GGCCGATGC
92818598 ATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGGCCGATGC
* * * * * *
92818644 ATATCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCAGATGCC
1 ATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCGATG-C
* * *
92818691 ATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATGC
1 ATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGCCGATGC
92818738 ATGTCCCAGACATGTCTTACACT
1 ATGTCCCAGACATGTCTTACACT
92818761 AGCACACAAA
Statistics
Matches: 210, Mismatches: 31, Indels: 32
0.77 0.11 0.12
Matches are distributed among these distances:
43 2 0.01
44 18 0.09
45 15 0.07
46 60 0.29
47 47 0.22
48 38 0.18
49 2 0.01
50 26 0.12
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
ATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCGATGC
Found at i:92818737 original size:94 final size:94
Alignment explanation
Indices: 92818353--92818763 Score: 328
Period size: 94 Copynumber: 4.4 Consensus size: 94
92818343 GGTACAATGT
* * * ** *
92818353 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CATCAAGTTGATGCCATATCCC-GA
1 CGATG-CATGTCCCAGACATGGTCTTACACTAGCTC-TCATATCATGCCGATGCCATGTCCCAG-
* * * *
92818416 ACATGGTCTTACATTGACTATCGA-AATTGAGGC
63 ACATGGTCTTACACTGGCTCTC-ATAA-TGTGGC
* * * *
92818449 CAACGCGATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTGCCGATGCCATGTCCTA
1 CGATGC-ATGTCCCAGACATGGTCTTACACTAGCTCT--CATAT-CATGCCGATGCCATGTCCCA
* * * *
92818514 GACATGGTCTTACACTGACACCTC-TATACGT-TC
62 GACATGGTCTTACACTGGC-TCTCATA-ATGTGGC
* * *
92818547 CGATGCCATGT-CCAGACATGGTCTTACACT-G-ACACATTTCATAGCCGATG-CATGTCCCAGA
1 CGATG-CATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAT-GCCGATGCCATGTCCCAGA
* *
92818608 CAT-GTCTTACACTGGCT-TACAT-CTCGAGGC
64 CATGGTCTTACACTGGCTCT-CATAAT-GTGGC
* * * *
92818638 CGATGCATATCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAATGCAGATGCCATGTCCCAGAC
1 CGATGCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-ATGCCGATGCCATGTCCCAGAC
92818702 ATGGTCTTACACTGGCTCTCATAATGTGGC
65 ATGGTCTTACACTGGCTCTCATAATGTGGC
*
92818732 TGATGCATGTCCCAGACAT-GTCTTACACTAGC
1 CGATGCATGTCCCAGACATGGTCTTACACTAGC
92818764 ACACAAATAA
Statistics
Matches: 253, Mismatches: 39, Indels: 48
0.74 0.11 0.14
Matches are distributed among these distances:
89 1 0.00
90 16 0.06
91 28 0.11
92 26 0.10
93 27 0.11
94 51 0.20
95 5 0.02
96 32 0.13
97 20 0.08
98 10 0.04
99 33 0.13
100 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (94 bp):
CGATGCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCTCTCATAATGTGGC
Found at i:92818741 original size:47 final size:47
Alignment explanation
Indices: 92818353--92818760 Score: 251
Period size: 47 Copynumber: 8.7 Consensus size: 47
92818343 GGTACAATGT
92818353 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA-GT--
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-CAT-AATGTGC
* * * * * *
92818400 TGATGCCATATCCC-GAACATGGTCTTACATTGACTATCGA-AATTGAGGC
1 CGATGCCATGTCCCAG-ACATGGTCTTACACTGGCTCTC-ATAA-TG-TGC
* * * * *
92818449 CAACGCGATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT--GTGC
* * * * *
92818499 CGATGCCATGTCCTAGACATGGTCTTACACTGACACCTC-TATACGTTC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATA-ATGTGC
* * * * *
92818547 CGATGCCATGT-CCAGACATGGTCTTACACTGACACAT-TTCAT-AGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGTGC
* *
92818592 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-G-TGC
* * *
92818638 CGATG-CATATCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAA--TGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC--AT-AATGTGC
*
92818684 AGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT-GC
*
92818732 TGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
92818761 AGCACACAAA
Statistics
Matches: 283, Mismatches: 47, Indels: 63
0.72 0.12 0.16
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 20 0.07
45 17 0.06
46 57 0.20
47 81 0.29
48 38 0.13
49 29 0.10
50 35 0.12
51 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGC
Found at i:92821797 original size:11 final size:11
Alignment explanation
Indices: 92821781--92821810 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
92821771 TGATTAGTAT
92821781 AGATTATTTTA
1 AGATTATTTTA
92821792 AGATTA-TTTA
1 AGATTATTTTA
92821802 AGATTATTT
1 AGATTATTT
92821811 GACCTACGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (11 bp):
AGATTATTTTA
Found at i:92828134 original size:53 final size:53
Alignment explanation
Indices: 92828051--92828155 Score: 131
Period size: 53 Copynumber: 2.0 Consensus size: 53
92828041 TGCCCGTGTG
* * *
92828051 ACCCATACACCCAAATTGGCCTCACTCGTGTGGCCCACAAGGCTTAACTCAAA
1 ACCCACACACCCAAATTGGCCTCACCCGTGTGGCCCACAAGGCTAAACTCAAA
* * * *
92828104 ACCCACACGCCCAACTTGGCCT-AGCCCGTGTGGCCTACACGGCTAAACTCAA
1 ACCCACACACCCAAATTGGCCTCA-CCCGTGTGGCCCACAAGGCTAAACTCAA
92828156 GCCACCACAT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
52 1 0.02
53 43 0.98
ACGTcount: A:0.28, C:0.38, G:0.17, T:0.17
Consensus pattern (53 bp):
ACCCACACACCCAAATTGGCCTCACCCGTGTGGCCCACAAGGCTAAACTCAAA
Found at i:92832393 original size:29 final size:29
Alignment explanation
Indices: 92832360--92832417 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
92832350 CCTATAAAGC
92832360 TTATTAACCCGAACAAACTACCCTAACAG
1 TTATTAACCCGAACAAACTACCCTAACAG
92832389 TTATTAACCCGAACAAACTACCCTAACAG
1 TTATTAACCCGAACAAACTACCCTAACAG
92832418 ACTCAATATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.31, G:0.07, T:0.21
Consensus pattern (29 bp):
TTATTAACCCGAACAAACTACCCTAACAG
Found at i:92834363 original size:16 final size:16
Alignment explanation
Indices: 92834342--92834384 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
92834332 AAACAGTTTG
*
92834342 TATTTTTAGAAAACCT
1 TATTTTTAGAAAACCA
92834358 TA-TTTTAGTAAAACCA
1 TATTTTTAG-AAAACCA
92834374 TAGTTTTTAGA
1 TA-TTTTTAGA
92834385 GATCAGATAC
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
15 6 0.26
16 10 0.43
17 1 0.04
18 6 0.26
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.44
Consensus pattern (16 bp):
TATTTTTAGAAAACCA
Found at i:92847568 original size:41 final size:40
Alignment explanation
Indices: 92847496--92847652 Score: 113
Period size: 41 Copynumber: 3.8 Consensus size: 40
92847486 GTGATATTCG
* * * *
92847496 GGCTTTAAGCCTAGCAAGCATTGTGCTGGTGAATGTAATTG
1 GGCTTTAAGCCTAGCAGGC-TTTTGCCGGTGAATGTAATTA
* * *
92847537 GGCTTTATGCCTAGCAGGCTTATTGCCGGTGAATATAAAATCA
1 GGCTTTAAGCCTAGCAGGCTT-TTGCCGGTGAATGT--AATTA
* * **
92847580 GACTTTAAGTCTAGCAGGCCTTAAGCCGGTG--TGTAATTCA
1 GGCTTTAAGCCTAGCAGG-CTTTTGCCGGTGAATGTAATT-A
**
92847620 GGC-TTATTCCTAGCAGGCTTTATGCCGGTGAAT
1 GGCTTTAAGCCTAGCAGGCTTT-TGCCGGTGAAT
92847653 TATTAAAAGT
Statistics
Matches: 88, Mismatches: 20, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
38 3 0.03
39 21 0.24
40 5 0.06
41 31 0.35
43 25 0.28
44 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.31
Consensus pattern (40 bp):
GGCTTTAAGCCTAGCAGGCTTTTGCCGGTGAATGTAATTA
Found at i:92850103 original size:19 final size:18
Alignment explanation
Indices: 92850076--92850133 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 18
92850066 TTTTTTAAAT
92850076 AATTTTAACTTGATTGAA
1 AATTTTAACTTGATTGAA
*
92850094 AATGTTTAACTCGATTGAA
1 AAT-TTTAACTTGATTGAA
92850113 ATCATTTTAACTTGATT-AA
1 A--ATTTTAACTTGATTGAA
92850132 AA
1 AA
92850134 GTTGATTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
17 1 0.03
18 3 0.09
19 18 0.51
20 11 0.31
21 2 0.06
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (18 bp):
AATTTTAACTTGATTGAA
Found at i:92850566 original size:31 final size:32
Alignment explanation
Indices: 92850528--92850661 Score: 129
Period size: 31 Copynumber: 4.4 Consensus size: 32
92850518 AATATATAGC
*
92850528 TTGGGTGACCAAAATGAAAGTGA-CTTAAAAT
1 TTGGGTGACCAAAATGAAAGTGACCCTAAAAT
92850559 TTGGGTGACCAAAATGAAAGT-ACCCTAAAAT
1 TTGGGTGACCAAAATGAAAGTGACCCTAAAAT
* * * *
92850590 TTAGGTGACCAAAATG--AG-AACACCT-TATT
1 TTGGGTGACCAAAATGAAAGTGAC-CCTAAAAT
* * * *
92850619 TTGGGTGACCAGAATGAAAGCG-TCCTAAAAG
1 TTGGGTGACCAAAATGAAAGTGACCCTAAAAT
92850650 TTGGGTGACCAA
1 TTGGGTGACCAA
92850662 CTAAGTAGTT
Statistics
Matches: 84, Mismatches: 12, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
29 20 0.24
30 7 0.08
31 57 0.68
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (32 bp):
TTGGGTGACCAAAATGAAAGTGACCCTAAAAT
Found at i:92851410 original size:66 final size:66
Alignment explanation
Indices: 92851297--92851426 Score: 165
Period size: 66 Copynumber: 2.0 Consensus size: 66
92851287 TGAAGAAGTT
* *
92851297 GCTGGAGTGCATCATATTTTCTTGTTGCCTCTACTTCCCTCACTGCTGCCTCCGTTTTAAGTTGT
1 GCTGAAGTGCATCATATTTTCTTGTAGCCTCTACTTCCCTCACTGCTGCCTCCGTTTTAAGTTGT
92851362 A
66 A
* * * * *
92851363 GCTGAAGTTCATCATATTTTCTT-TGAGCCTTTGCTTCTCTC-CATGCTGCCTTCGTTTTAAGTT
1 GCTGAAGTGCATCATATTTTCTTGT-AGCCTCTACTTCCCTCAC-TGCTGCCTCCGTTTTAAGTT
92851426 G
64 G
92851427 AGCAATTTGC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
65 2 0.04
66 53 0.96
ACGTcount: A:0.14, C:0.25, G:0.18, T:0.43
Consensus pattern (66 bp):
GCTGAAGTGCATCATATTTTCTTGTAGCCTCTACTTCCCTCACTGCTGCCTCCGTTTTAAGTTGT
A
Found at i:92852203 original size:194 final size:194
Alignment explanation
Indices: 92851874--92852263 Score: 744
Period size: 194 Copynumber: 2.0 Consensus size: 194
92851864 GCAGCTTCAG
*
92851874 TACTCATATGAGATACATCTTCCTTTCTATGTTTAATGTCAAAAAGCTAAAGGCGTCCAACTTTT
1 TACTCATATGAGATACATCTTCCTTTCTATATTTAATGTCAAAAAGCTAAAGGCGTCCAACTTTT
92851939 TGACCAGATGACAGTTCCTATAATATAGTATAAAAAATATTATTTAGTAGAAAATAATTAATATT
66 TGACCAGATGACAGTTCCTATAATATAGTATAAAAAATATTATTTAGTAGAAAATAATTAATATT
*
92852004 TGACACAATTAATAAATTCAAAATACTTCGTCATCAGCTACACAAGCAAACTTTTCGACCTAGC
131 TGACACAATTAATAAATTCAAAATACCTCGTCATCAGCTACACAAGCAAACTTTTCGACCTAGC
* *
92852068 TACTCATATGAGATATATCTTTCTTTCTATATTTAATGTCAAAAAGCTAAAGGCGTCCAACTTTT
1 TACTCATATGAGATACATCTTCCTTTCTATATTTAATGTCAAAAAGCTAAAGGCGTCCAACTTTT
92852133 TGACCAGATGACAGTTCCTATAATATAGTATAAAAAATATTATTTAGTAGAAAATAATTAATATT
66 TGACCAGATGACAGTTCCTATAATATAGTATAAAAAATATTATTTAGTAGAAAATAATTAATATT
92852198 TGACACAATTAATAAATTCAAAATACCTCGTCATCAGCTACACAAGCAAACTTTTCGACCTAGC
131 TGACACAATTAATAAATTCAAAATACCTCGTCATCAGCTACACAAGCAAACTTTTCGACCTAGC
92852262 TA
1 TA
92852264 TCTGTGTGAA
Statistics
Matches: 192, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
194 192 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (194 bp):
TACTCATATGAGATACATCTTCCTTTCTATATTTAATGTCAAAAAGCTAAAGGCGTCCAACTTTT
TGACCAGATGACAGTTCCTATAATATAGTATAAAAAATATTATTTAGTAGAAAATAATTAATATT
TGACACAATTAATAAATTCAAAATACCTCGTCATCAGCTACACAAGCAAACTTTTCGACCTAGC
Found at i:92858230 original size:23 final size:22
Alignment explanation
Indices: 92858178--92858230 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
92858168 TCCACGTCTT
*
92858178 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
92858200 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
92858223 TTTCTTTT
1 TTTCTTTT
92858231 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:92863873 original size:21 final size:21
Alignment explanation
Indices: 92863849--92863888 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
92863839 ATAAACTTTT
*
92863849 CAATTGATTGTATAAAACAAA
1 CAATAGATTGTATAAAACAAA
*
92863870 CAATAGGTTGTATAAAACA
1 CAATAGATTGTATAAAACA
92863889 GTATACTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.28
Consensus pattern (21 bp):
CAATAGATTGTATAAAACAAA
Found at i:92864602 original size:25 final size:25
Alignment explanation
Indices: 92864565--92864612 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
92864555 AAAAACTTAC
92864565 ATGGCAATACAGCAGAGGACTATCA
1 ATGGCAATACAGCAGAGGACTATCA
* *
92864590 ATGGCGATGCAGCAGAGGACTAT
1 ATGGCAATACAGCAGAGGACTAT
92864613 TGACAACGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.19, G:0.29, T:0.17
Consensus pattern (25 bp):
ATGGCAATACAGCAGAGGACTATCA
Found at i:92864665 original size:20 final size:21
Alignment explanation
Indices: 92864633--92864683 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
92864623 GCAGTAGATG
92864633 TTGGGGAAAAAAATAAGGGAT
1 TTGGGGAAAAAAATAAGGGAT
92864654 TTGGGGAAAAAAATAAGGGAT
1 TTGGGGAAAAAAATAAGGGAT
*
92864675 TTCGGGAAA
1 TTGGGGAAA
92864684 CTGATTTGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.45, C:0.02, G:0.33, T:0.20
Consensus pattern (21 bp):
TTGGGGAAAAAAATAAGGGAT
Found at i:92864820 original size:41 final size:39
Alignment explanation
Indices: 92864775--92864940 Score: 113
Period size: 42 Copynumber: 4.0 Consensus size: 39
92864765 AAATGCCACA
*
92864775 ATTGCTTTAGCTTTAGCGGCGTTTATGAAAAAAA-CACTGCT
1 ATTGCTTTA-CTTTTGCGGCGTTTATGAAAAAAAGC-C-GCT
* *
92864816 ATTGCTTTACTGTTTGTGGCATTTATGAGAAAAAAGCCGCT
1 ATTGCTTTACT-TTTGCGGCGTTTATGA-AAAAAAGCCGCT
* * *
92864857 ATAGTTTTAACCTTTTGCGGCGTTTATGAGAAAAATA-CCACT
1 ATTGCTTT-A-CTTTTGCGGCGTTTATGA-AAAAA-AGCCGCT
* * * *
92864899 ATAG-TTATAACCTTTTGCGGCGTTTATGCATAAACGCCGCT
1 ATTGCTT-T-A-CTTTTGCGGCGTTTATGAAAAAAAGCCGCT
92864940 A
1 A
92864941 CTATTTTACA
Statistics
Matches: 105, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
40 2 0.02
41 42 0.40
42 57 0.54
43 4 0.04
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (39 bp):
ATTGCTTTACTTTTGCGGCGTTTATGAAAAAAAGCCGCT
Found at i:92864883 original size:42 final size:41
Alignment explanation
Indices: 92864785--92864926 Score: 155
Period size: 42 Copynumber: 3.4 Consensus size: 41
92864775 ATTGCTTTAG
* * *
92864785 CTTTAGCGGCGTTTATGA-AAAAAACACTGCTATTGCTTT-A-
1 CTTTTGCGGCGTTTATGAGAAAAAAC-C-GCTATAGTTTTAAC
* *
92864825 CTGTTTGTGGCATTTATGAGAAAAAAGCCGCTATAGTTTTAAC
1 CT-TTTGCGGCGTTTATGAGAAAAAA-CCGCTATAGTTTTAAC
* *
92864868 CTTTTGCGGCGTTTATGAGAAAAATACCACTATAGTTATAAC
1 CTTTTGCGGCGTTTATGAGAAAAA-ACCGCTATAGTTTTAAC
92864910 CTTTTGCGGCGTTTATG
1 CTTTTGCGGCGTTTATG
92864927 CATAAACGCC
Statistics
Matches: 87, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
40 2 0.02
41 22 0.25
42 59 0.68
43 4 0.05
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (41 bp):
CTTTTGCGGCGTTTATGAGAAAAAACCGCTATAGTTTTAAC
Found at i:92873860 original size:40 final size:34
Alignment explanation
Indices: 92873815--92873899 Score: 100
Period size: 34 Copynumber: 2.4 Consensus size: 34
92873805 CCAAAATTAT
92873815 TATTTTAGAAAATTTTTAAAATATTAACTTTATATATATA
1 TATTTTAG-AAATTTTTAAAAT-TT-A---TATATATATA
*
92873855 TATTTTAGAATTTTTTAAAATTTATATATATATA
1 TATTTTAGAAATTTTTAAAATTTATATATATATA
92873889 TATTTTA-AAAT
1 TATTTTAGAAAT
92873900 ATAAATTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
33 3 0.07
34 17 0.40
37 1 0.02
38 2 0.05
39 12 0.28
40 8 0.19
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (34 bp):
TATTTTAGAAATTTTTAAAATTTATATATATATA
Found at i:92873887 original size:38 final size:40
Alignment explanation
Indices: 92873815--92873891 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 40
92873805 CCAAAATTAT
*
92873815 TATTTTAGAAAATTTTTAAAATATTAACTTTATATATATA
1 TATTTTAGAAAATTTTTAAAATATTAACTATATATATATA
*
92873855 TATTTTAG-AATTTTTTAAAAT-TT-A-TATATATATATA
1 TATTTTAGAAAATTTTTAAAATATTAACTATATATATATA
92873891 T
1 T
92873892 TTTAAAATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 12 0.34
37 1 0.03
38 2 0.06
39 12 0.34
40 8 0.23
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (40 bp):
TATTTTAGAAAATTTTTAAAATATTAACTATATATATATA
Found at i:92888316 original size:13 final size:14
Alignment explanation
Indices: 92888278--92888318 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
92888268 ATAGGGGTAG
92888278 GATTCTGTATATCT
1 GATTCTGTATATCT
* *
92888292 G-TTCAGTTTATCT
1 GATTCTGTATATCT
92888305 GATTCTG-ATATCT
1 GATTCTGTATATCT
92888318 G
1 G
92888319 TATCTATTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.20, C:0.15, G:0.17, T:0.49
Consensus pattern (14 bp):
GATTCTGTATATCT
Found at i:92888551 original size:17 final size:19
Alignment explanation
Indices: 92888514--92888552 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
92888504 AAAGAACTAT
*
92888514 TTTATTTTAGTAATAATGG
1 TTTATTTTAGAAATAATGG
92888533 TTTATTTTA-AAAT-ATGG
1 TTTATTTTAGAAATAATGG
92888550 TTT
1 TTT
92888553 TGTTAGAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 3 0.16
19 9 0.47
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56
Consensus pattern (19 bp):
TTTATTTTAGAAATAATGG
Found at i:92908689 original size:12 final size:11
Alignment explanation
Indices: 92908670--92908713 Score: 70
Period size: 11 Copynumber: 3.9 Consensus size: 11
92908660 GTTATACAAG
92908670 TCAAAAAAAAT
1 TCAAAAAAAAT
*
92908681 TCGAAAAAAGAT
1 TC-AAAAAAAAT
92908693 TCAAAAAAAAT
1 TCAAAAAAAAT
92908704 TCAAAAAAAA
1 TCAAAAAAAA
92908714 ATCTGAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 20 0.67
12 10 0.33
ACGTcount: A:0.70, C:0.09, G:0.05, T:0.16
Consensus pattern (11 bp):
TCAAAAAAAAT
Found at i:92908696 original size:23 final size:24
Alignment explanation
Indices: 92908670--92908726 Score: 80
Period size: 23 Copynumber: 2.4 Consensus size: 24
92908660 GTTATACAAG
* *
92908670 TCAAAAAAAATTCGAAAAAAGAT-
1 TCAAAAAAAATTCAAAAAAAAATC
92908693 TCAAAAAAAATTCAAAAAAAAATC
1 TCAAAAAAAATTCAAAAAAAAATC
*
92908717 TGAAAAAAAA
1 TCAAAAAAAA
92908727 GTGTTTAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 21 0.70
24 9 0.30
ACGTcount: A:0.70, C:0.09, G:0.05, T:0.16
Consensus pattern (24 bp):
TCAAAAAAAATTCAAAAAAAAATC
Found at i:92908714 original size:12 final size:12
Alignment explanation
Indices: 92908672--92908726 Score: 67
Period size: 12 Copynumber: 4.6 Consensus size: 12
92908662 TATACAAGTC
*
92908672 AAAAAAAATTCG
1 AAAAAAAATTCA
*
92908684 AAAAAAGATTC-
1 AAAAAAAATTCA
92908695 AAAAAAAATTCA
1 AAAAAAAATTCA
*
92908707 AAAAAAAATCTGA
1 AAAAAAAAT-TCA
92908720 AAAAAAA
1 AAAAAAA
92908727 GTGTTTAATG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
11 10 0.26
12 19 0.50
13 9 0.24
ACGTcount: A:0.73, C:0.07, G:0.05, T:0.15
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:92920495 original size:40 final size:40
Alignment explanation
Indices: 92920448--92920651 Score: 268
Period size: 40 Copynumber: 5.1 Consensus size: 40
92920438 CGGGCTTTAA
** * *
92920448 CCGGATATAGCCACTCACTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** *
92920488 CCGGATATAGTAGTTTGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
92920528 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
92920568 CCGGA-ATTAGTAACTCGCACAAATTCCTTCGGTACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
92920608 CC-GAAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
92920648 CCGG
1 CCGG
92920652 TTATCATCCG
Statistics
Matches: 145, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 3 0.02
40 141 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:92928473 original size:40 final size:39
Alignment explanation
Indices: 92928426--92928629 Score: 284
Period size: 40 Copynumber: 5.1 Consensus size: 39
92928416 CGGGCTTTAA
*
92928426 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-CACTCGCACAAATGCCTTCGGGACTTAGC
* *
92928466 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGCA-CTCGCACAAATGCCTTCGGGACTTAGC
*
92928506 CCGGATATAGTACTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGCAC-TCGCACAAATGCCTTCGGGACTTAGC
* *
92928546 CCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-CACTCGCACAAATGCCTTCGGGACTTAGC
*
92928586 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAG-CACTCGCACAAATGCCTTCGGGACTTAGC
92928626 CCGG
1 CCGG
92928630 TTATCATCTG
Statistics
Matches: 151, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
39 2 0.01
40 147 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
CCGGATATAGCACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:92932700 original size:15 final size:15
Alignment explanation
Indices: 92932680--92932713 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
92932670 TCAAAACCTT
92932680 TTTCCATGGTGACAC
1 TTTCCATGGTGACAC
92932695 TTTCCATGGTGACAC
1 TTTCCATGGTGACAC
92932710 TTTC
1 TTTC
92932714 AAAAATACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.38
Consensus pattern (15 bp):
TTTCCATGGTGACAC
Found at i:92942637 original size:6 final size:5
Alignment explanation
Indices: 92942611--92942693 Score: 58
Period size: 6 Copynumber: 14.8 Consensus size: 5
92942601 ATATATTTTC
* * *
92942611 AAAAT AAAAT AAAATT GAAAT GAAAAT AAAAAT CAAAAGA AAAAGA AAAAT
1 AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAA-T AAAAT
92942662 AAAAT AAAAT AAGAAT AAGAAT AAGAAT AAAA
1 AAAAT AAAAT AA-AAT AA-AAT AA-AAT AAAA
92942694 AAATAGGAGG
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
5 24 0.35
6 44 0.65
ACGTcount: A:0.75, C:0.01, G:0.08, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:92942652 original size:17 final size:17
Alignment explanation
Indices: 92942609--92942673 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
92942599 AGATATATTT
* *
92942609 TCAAAATAAAATAAAAT
1 TCAAAAGAAAATAAAAA
* *
92942626 TGAAATGAAAATAAAAA
1 TCAAAAGAAAATAAAAA
*
92942643 TCAAAAGAAAAAGAAAAA
1 TCAAAAG-AAAATAAAAA
*
92942661 T-AAAATAAAATAA
1 TCAAAAGAAAATAA
92942674 GAATAAGAAT
Statistics
Matches: 38, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
16 6 0.16
17 22 0.58
18 10 0.26
ACGTcount: A:0.74, C:0.03, G:0.06, T:0.17
Consensus pattern (17 bp):
TCAAAAGAAAATAAAAA
Done.