Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 276 of 373
Found at i:93502580 original size:173 final size:173
Alignment explanation
Indices: 93502291--93502643 Score: 697
Period size: 173 Copynumber: 2.0 Consensus size: 173
93502281 TGTATAGGAA
93502291 ACTTGGTCATTTGGTGATATGTGTCGTGTTATTTGGCCAATTTGTGAAGGCCTATGATACTGATG
1 ACTTGGTCATTTGGTGATATGTGTCGTGTTATTTGGCCAATTTGTGAAGGCCTATGATACTGATG
93502356 ATTCATTTTGTAATGGCCATGTGATATGGCTCATACTTGATCATTTGGGTTGTAATCTAATTACC
66 ATTCATTTTGTAATGGCCATGTGATATGGCTCATACTTGATCATTTGGGTTGTAATCTAATTACC
93502421 CATGCATGCATGTGCTCGTGTTTTGATGGTAGGACATGTTATT
131 CATGCATGCATGTGCTCGTGTTTTGATGGTAGGACATGTTATT
93502464 ACTTGGTCATTTGGTGATATGTGTCGTGTTATTTGGCCAATTTGTGAAGGCCTATGATACTGATG
1 ACTTGGTCATTTGGTGATATGTGTCGTGTTATTTGGCCAATTTGTGAAGGCCTATGATACTGATG
93502529 ATTCATTTTGTAATGGCCATGTGATATGGCTCATACTTGATCATTTGGGTTGTAATCTAATTACC
66 ATTCATTTTGTAATGGCCATGTGATATGGCTCATACTTGATCATTTGGGTTGTAATCTAATTACC
93502594 CATGCATGCATGTGCTCGTGTTTTGATGGTAGGACATGTTATT
131 CATGCATGCATGTGCTCGTGTTTTGATGGTAGGACATGTTATT
*
93502637 GCTTGGT
1 ACTTGGT
93502644 GAATGCATGA
Statistics
Matches: 179, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
173 179 1.00
ACGTcount: A:0.21, C:0.14, G:0.25, T:0.41
Consensus pattern (173 bp):
ACTTGGTCATTTGGTGATATGTGTCGTGTTATTTGGCCAATTTGTGAAGGCCTATGATACTGATG
ATTCATTTTGTAATGGCCATGTGATATGGCTCATACTTGATCATTTGGGTTGTAATCTAATTACC
CATGCATGCATGTGCTCGTGTTTTGATGGTAGGACATGTTATT
Found at i:93506539 original size:19 final size:20
Alignment explanation
Indices: 93506515--93506552 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
93506505 GGTACCACCA
93506515 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
93506534 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
93506553 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:93506893 original size:93 final size:93
Alignment explanation
Indices: 93506782--93506952 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
93506772 GCCCCAAAGT
* * * *
93506782 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCAGCCTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
93506847 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
93506875 GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
93506940 CGAGTTCGGATGC
66 CGAGTTCGGATGC
93506953 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:93506949 original size:46 final size:46
Alignment explanation
Indices: 93506778--93506949 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
93506768 ACCCGCCCCA
* * * * *
93506778 AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT
1 AAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCAT
* * * *
93506824 AAATGAACTCAGCCTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T
1 AAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCAT
* *
93506872 CA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCAT
1 AAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCAT
*
93506917 AAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 AAGTGAACTCAGACTCAACTCAACGAGTTCGGA
93506950 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 56 0.55
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
AAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCAT
Found at i:93509210 original size:49 final size:48
Alignment explanation
Indices: 93508968--93509227 Score: 229
Period size: 46 Copynumber: 5.5 Consensus size: 48
93508958 AGATATGTGT
*
93508968 GCTAGTGTAAGACATGTCTGGGACATGCATCAGACA-C-ATTG-TGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GACATCAATAGATGAGA
* * * * *
93509014 GCCAGTGTAAGACATGCCTAGGACATGCATTGAC--CACAT-TATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATCA-ATAGATGAGA
* * *
93509060 GCTAGTGTAAGACATGTCTGGGACATGTATTGGCAT---TGAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATCAAT-AGATGAGA
* * * *
93509106 GCTAGTGTAAGACATGTTTGGGACATGCATC-AGCCTCGAGATATA-CA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGA-CATC-A-ATAGATGAGA
*
93509154 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACATCAATAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGACATCAATAGATGAGA
* *
93509203 GCTAGTGTAAGACCTATCTGGGACA
1 GCTAGTGTAAGACATGTCTGGGACA
93509228 CGACATTGGC
Statistics
Matches: 173, Mismatches: 24, Indels: 31
0.76 0.11 0.14
Matches are distributed among these distances:
44 2 0.01
45 3 0.02
46 99 0.57
47 4 0.02
48 27 0.16
49 34 0.20
50 3 0.02
51 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACATCAATAGATGAGA
Found at i:93509282 original size:98 final size:97
Alignment explanation
Indices: 93509098--93509286 Score: 256
Period size: 98 Copynumber: 1.9 Consensus size: 97
93509088 ATTGGCATTG
* * *
93509098 AGATGAGAGCTAGTGTAAGACATGTTTGGGACATGCATCAGCCTCGAGATATACAAGCTAGTGTA
1 AGATGAGAGCTAGTGTAAGACATATCTGGGACACGCATCAGCCTCGAGATATACAAGCTAGTGTA
*
93509163 AGACCTGTCTGGGACATGGCATCGACATCAAT
66 AGACCTATCTGGGACATGGCATCGACATCAAT
* ** * *
93509195 AGATGAGAGCTAGTGTAAGACCTATCTGGGACACGACATTGGCCTTGATG-TATGA-AAGTTAGT
1 AGATGAGAGCTAGTGTAAGACATATCTGGGACACG-CATCAGCCTCGA-GATAT-ACAAGCTAGT
93509258 GTAAGACCTATCTGGGACATGGCATCGAC
63 GTAAGACCTATCTGGGACATGGCATCGAC
93509287 TTTGATGTGC
Statistics
Matches: 80, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
97 31 0.39
98 47 0.59
99 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (97 bp):
AGATGAGAGCTAGTGTAAGACATATCTGGGACACGCATCAGCCTCGAGATATACAAGCTAGTGTA
AGACCTATCTGGGACATGGCATCGACATCAAT
Found at i:93509292 original size:49 final size:49
Alignment explanation
Indices: 93509053--93509294 Score: 185
Period size: 49 Copynumber: 5.0 Consensus size: 49
93509043 TTGACCACAT
* * * * * *
93509053 TATGAGAGCTAGTGTAAGACATGTCTGGGACAT-GTATTGGCATTGA-G
1 TATGAAAGCTAGTGTAAGACCTATCTGGGACATGGCATCGACATTGATG
* * * * * *
93509100 -ATGAGAGCTAGTGTAAGACATGTTTGGGACAT-GCATC-AGCCTCGA-G
1 TATGAAAGCTAGTGTAAGACCTATCTGGGACATGGCATCGA-CATTGATG
* **
93509146 ATAT-ACAAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACATCAATAG
1 -TATGA-AAGCTAGTGTAAGACCTATCTGGGACATGGCATCGACATTGAT-G
* * * * * *
93509197 -ATGAGAGCTAGTGTAAGACCTATCTGGGACACGACATTGGCCTTGATG
1 TATGAAAGCTAGTGTAAGACCTATCTGGGACATGGCATCGACATTGATG
* *
93509245 TATGAAAGTTAGTGTAAGACCTATCTGGGACATGGCATCGACTTTGATG
1 TATGAAAGCTAGTGTAAGACCTATCTGGGACATGGCATCGACATTGATG
93509294 T
1 T
93509295 GCTAGCCAGT
Statistics
Matches: 158, Mismatches: 27, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
46 39 0.25
47 1 0.01
48 28 0.18
49 87 0.55
50 2 0.01
51 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (49 bp):
TATGAAAGCTAGTGTAAGACCTATCTGGGACATGGCATCGACATTGATG
Found at i:93512446 original size:3 final size:3
Alignment explanation
Indices: 93512398--93512428 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
93512388 GTATCTCCAT
93512398 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
93512429 ACCAACTAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:93513347 original size:32 final size:32
Alignment explanation
Indices: 93513294--93513363 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
93513284 TACATCCACA
* *
93513294 TGAATTTGGACAAATGGTTATTTAGGTTCA-CT
1 TGAATTTGGACAAAT-GTTATTCAAGTTCATCT
93513326 TGAATTTGGACAACCAT-TTATTCAAGTTCATCT
1 TGAATTTGGACAA--ATGTTATTCAAGTTCATCT
93513359 TGAAT
1 TGAAT
93513364 GTGGTTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
32 24 0.73
33 7 0.21
34 2 0.06
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (32 bp):
TGAATTTGGACAAATGTTATTCAAGTTCATCT
Found at i:93513473 original size:29 final size:29
Alignment explanation
Indices: 93513430--93513490 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
93513420 ATTTATTTTA
*
93513430 AAATTATAAATAATTA-TATCAAATTAGTT
1 AAATTATAAATAATTACT-TAAAATTAGTT
93513459 AAATTATTAAA-AATTACTTAAAATTAGTT
1 AAATTA-TAAATAATTACTTAAAATTAGTT
93513488 AAA
1 AAA
93513491 AATTAGTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 24 0.83
30 5 0.17
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.39
Consensus pattern (29 bp):
AAATTATAAATAATTACTTAAAATTAGTT
Found at i:93513481 original size:11 final size:10
Alignment explanation
Indices: 93513398--93513495 Score: 55
Period size: 10 Copynumber: 9.8 Consensus size: 10
93513388 AAAAATTTAA
93513398 AAAAATTA-T
1 AAAAATTATT
*
93513407 AAAAATTATG
1 AAAAATTATT
* *
93513417 GAAATTTATTT
1 AAAAATTA-TT
*
93513428 TAAAATTA-T
1 AAAAATTATT
93513437 AAATAATTA-T
1 AAA-AATTATT
*
93513447 ATCAAATTAGTT
1 A-AAAATTA-TT
93513459 --AAATTATT
1 AAAAATTATT
93513467 AAAAATTACTT
1 AAAAATTA-TT
93513478 -AAAATTAGTT
1 AAAAATTA-TT
93513488 AAAAATTA
1 AAAAATTA
93513496 GTATTAAAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
8 2 0.03
9 17 0.24
10 33 0.47
11 17 0.24
12 1 0.01
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (10 bp):
AAAAATTATT
Found at i:93513504 original size:13 final size:11
Alignment explanation
Indices: 93513450--93513507 Score: 61
Period size: 10 Copynumber: 5.5 Consensus size: 11
93513440 TAATTATATC
93513450 AAATTAGTT--
1 AAATTAGTTAA
93513459 AAATTA-TTAA
1 AAATTAGTTAA
*
93513469 AAATTACTT-A
1 AAATTAGTTAA
93513479 AAATTAGTTAA
1 AAATTAGTTAA
93513490 AAATTAGTATTAA
1 AAATTAG--TTAA
93513503 AAATT
1 AAATT
93513508 TCAAATACAC
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
8 2 0.05
9 6 0.14
10 15 0.36
11 10 0.24
13 9 0.21
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (11 bp):
AAATTAGTTAA
Found at i:93514977 original size:27 final size:28
Alignment explanation
Indices: 93514935--93514999 Score: 107
Period size: 27 Copynumber: 2.4 Consensus size: 28
93514925 TCAGGGTATG
93514935 CCACAAAGG-TAGTTCTTTTAGAGTTCA
1 CCACAAAGGCTAGTTCTTTTAGAGTTCA
*
93514962 CCACAAAGGCTA-TTCTTTTAGAGTTCG
1 CCACAAAGGCTAGTTCTTTTAGAGTTCA
93514989 CCACAAAGGCT
1 CCACAAAGGCT
93515000 CACAAAATGA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 34 0.94
28 2 0.06
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (28 bp):
CCACAAAGGCTAGTTCTTTTAGAGTTCA
Found at i:93518896 original size:27 final size:27
Alignment explanation
Indices: 93518866--93519043 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
93518856 ATATTGAGTC
* * * *
93518866 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
93518893 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
93518920 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
93518948 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
93518975 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
93519002 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
93519029 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
93519044 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:93519005 original size:82 final size:81
Alignment explanation
Indices: 93518887--93519042 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
93518877 TGCTATATAA
* *
93518887 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
93518952 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
93518969 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
93519033 CACTTAGTGC
65 CACTTAGTGC
93519043 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:93538084 original size:40 final size:40
Alignment explanation
Indices: 93538040--93538187 Score: 260
Period size: 40 Copynumber: 3.7 Consensus size: 40
93538030 GCAAACACAT
* *
93538040 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
93538080 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
* *
93538120 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
93538160 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
93538188 TCCAATGCTC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
Found at i:93547208 original size:20 final size:22
Alignment explanation
Indices: 93547183--93547223 Score: 59
Period size: 20 Copynumber: 1.9 Consensus size: 22
93547173 CATGGGTGGC
93547183 CACATGG-GTGTG-TGCTAGTT
1 CACATGGCGTGTGCTGCTAGTT
93547203 CACATGGCCGTGTGCTGCTAG
1 CACATGG-CGTGTGCTGCTAG
93547224 GAGTTAGGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
22 5 0.28
23 6 0.33
ACGTcount: A:0.15, C:0.22, G:0.34, T:0.29
Consensus pattern (22 bp):
CACATGGCGTGTGCTGCTAGTT
Found at i:93558677 original size:60 final size:60
Alignment explanation
Indices: 93558584--93558704 Score: 197
Period size: 60 Copynumber: 2.0 Consensus size: 60
93558574 ATTAACGGTA
* *
93558584 AAAAGGATATAGCCCGGATAGGTGATCCTAATGATATAGCCCTCTCAAAGAATATGAGTG
1 AAAAGGATATAGCCCGGACAGGTGATCCTAATGATATAGCCCTCCCAAAGAATATGAGTG
* * *
93558644 AAAAGGATCTAGCCCGGACGGGTGATCCTAATGATATAGCCCTCCCAAAGAATATGTGTG
1 AAAAGGATATAGCCCGGACAGGTGATCCTAATGATATAGCCCTCCCAAAGAATATGAGTG
93558704 A
1 A
93558705 GTCTGGATTT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (60 bp):
AAAAGGATATAGCCCGGACAGGTGATCCTAATGATATAGCCCTCCCAAAGAATATGAGTG
Found at i:93558924 original size:67 final size:67
Alignment explanation
Indices: 93558816--93558944 Score: 179
Period size: 67 Copynumber: 1.9 Consensus size: 67
93558806 AGCATATGTT
* ** * *
93558816 ACAGGGGATTTAGCCTGGACTAGTAATCCTGCTGTAAGAAATGAGG-TTGACGGGAGTGTGCTCT
1 ACAGGAGATTTAGCCTGGACTAGTAATCCCACTATAAGAAATAAGGTTTG-CGGGAGTGTGCTCT
93558880 CTC
65 CTC
* *
93558883 ACAGGAGATTTAGCCTGGACTGGTAATCCCACTATGAGAAATAAGGTTTGCGGGAGTGTGCT
1 ACAGGAGATTTAGCCTGGACTAGTAATCCCACTATAAGAAATAAGGTTTGCGGGAGTGTGCT
93558945 ATGTAAAATG
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
67 51 0.94
68 3 0.06
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (67 bp):
ACAGGAGATTTAGCCTGGACTAGTAATCCCACTATAAGAAATAAGGTTTGCGGGAGTGTGCTCTC
TC
Found at i:93559096 original size:20 final size:23
Alignment explanation
Indices: 93559066--93559110 Score: 69
Period size: 20 Copynumber: 2.1 Consensus size: 23
93559056 ATAGAAAATG
93559066 ATAAGAACTTGAAAT-CA-AGAA
1 ATAAGAACTTGAAATACATAGAA
93559087 ATAA-AACTTGAAATACATAGAA
1 ATAAGAACTTGAAATACATAGAA
93559109 AT
1 AT
93559111 GATAATTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 10 0.45
21 6 0.27
22 6 0.27
ACGTcount: A:0.58, C:0.09, G:0.11, T:0.22
Consensus pattern (23 bp):
ATAAGAACTTGAAATACATAGAA
Found at i:93560102 original size:41 final size:41
Alignment explanation
Indices: 93560043--93560124 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
93560033 TTGGTGTCTG
*
93560043 AACATCTCTGATTGCGAATCAGGTGTGGGTTTCAAAACTTT
1 AACATCTCTGATTACGAATCAGGTGTGGGTTTCAAAACTTT
* *
93560084 AACATCTTTGATTACGAATCAGGTGTGGGTTTCGAAACTTT
1 AACATCTCTGATTACGAATCAGGTGTGGGTTTCAAAACTTT
93560125 CTATTTTTTG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (41 bp):
AACATCTCTGATTACGAATCAGGTGTGGGTTTCAAAACTTT
Found at i:93566372 original size:67 final size:67
Alignment explanation
Indices: 93566264--93566439 Score: 325
Period size: 67 Copynumber: 2.6 Consensus size: 67
93566254 GAGGAAGTGT
* *
93566264 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCTACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
93566329 TA
66 TA
93566331 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
93566396 TA
66 TA
*
93566398 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACACATAT
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATAT
93566440 ATATATATCT
Statistics
Matches: 106, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 106 1.00
ACGTcount: A:0.18, C:0.30, G:0.23, T:0.30
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
TA
Found at i:93566388 original size:27 final size:26
Alignment explanation
Indices: 93566350--93566401 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
93566340 CTCGCTGCAA
*
93566350 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
93566377 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
93566402 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:93575526 original size:27 final size:26
Alignment explanation
Indices: 93575474--93575532 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
93575464 ATATATATAT
*
93575474 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
93575500 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
93575527 ATATCT
1 ATATCT
93575533 TGCAGCCTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:93578240 original size:23 final size:22
Alignment explanation
Indices: 93578201--93578249 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
93578191 GTGATTCATA
* *
93578201 TGAATGTATTTTGATTATGATTG
1 TGAATGAATTTTGATTAAG-TTG
93578224 TGAATGAATGTTT-ATTAAGTTG
1 TGAATGAAT-TTTGATTAAGTTG
93578246 TGAA
1 TGAA
93578250 ATGTTAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 7 0.30
23 13 0.57
24 3 0.13
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (22 bp):
TGAATGAATTTTGATTAAGTTG
Found at i:93578291 original size:33 final size:33
Alignment explanation
Indices: 93578253--93578318 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
93578243 TTGTGAAATG
93578253 TTAGTTAAATGTTGTGTTTGATTGGTAATACCT
1 TTAGTTAAATGTTGTGTTTGATTGGTAATACCT
93578286 TTAGTTAAATGTTGTGTTTGATTGGTAATACCT
1 TTAGTTAAATGTTGTGTTTGATTGGTAATACCT
93578319 CTTAACCCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.24, C:0.06, G:0.21, T:0.48
Consensus pattern (33 bp):
TTAGTTAAATGTTGTGTTTGATTGGTAATACCT
Found at i:93588463 original size:29 final size:30
Alignment explanation
Indices: 93588431--93588490 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
93588421 TTCCCGAGAC
93588431 TAGGGG-AAAAGTGTAAATATGTAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGTAAAAGTT
* * * *
93588460 TAGGGGCAAAATTGTAATTATTTCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGTAAAAGTT
93588490 T
1 T
93588491 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.40, C:0.03, G:0.23, T:0.33
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGTAAAAGTT
Found at i:93589069 original size:18 final size:18
Alignment explanation
Indices: 93589046--93589081 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
93589036 TTAATGAGTC
93589046 TATTTTCATATAAAAGAA
1 TATTTTCATATAAAAGAA
93589064 TATTTTCATATAAAAGAA
1 TATTTTCATATAAAAGAA
93589082 ATAGAGCAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.39
Consensus pattern (18 bp):
TATTTTCATATAAAAGAA
Found at i:93606739 original size:20 final size:18
Alignment explanation
Indices: 93606689--93606740 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
93606679 ATATAAGATA
93606689 AACATTAAATTAA-ATTT
1 AACATTAAATTAATATTT
93606706 AACATTAAGA-TAATCACTTT
1 AACATTAA-ATTAAT-A-TTT
*
93606726 AATATTAAATTAATA
1 AACATTAAATTAATA
93606741 AAATACTAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
17 11 0.38
18 1 0.03
19 3 0.10
20 14 0.48
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (18 bp):
AACATTAAATTAATATTT
Found at i:93632773 original size:24 final size:24
Alignment explanation
Indices: 93632745--93632823 Score: 60
Period size: 24 Copynumber: 3.2 Consensus size: 24
93632735 AGGCTACTAC
93632745 GTGTATCAGATGGTTAGGTCACCT
1 GTGTATCAGATGGTTAGGTCACCT
93632769 GTGTAGTACTA-A--GTGTAGG-CTA-CT
1 GTGTA-T-C-AGATGGT-TAGGTC-ACCT
93632793 ACGTGTATCAGATGGTTAGGTCACCT
1 --GTGTATCAGATGGTTAGGTCACCT
93632819 GTGTA
1 GTGTA
93632824 GTACTAAGTG
Statistics
Matches: 43, Mismatches: 0, Indels: 24
0.64 0.00 0.36
Matches are distributed among these distances:
23 1 0.02
24 17 0.40
25 12 0.28
26 12 0.28
27 1 0.02
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.33
Consensus pattern (24 bp):
GTGTATCAGATGGTTAGGTCACCT
Found at i:93632793 original size:50 final size:50
Alignment explanation
Indices: 93632713--93632892 Score: 272
Period size: 50 Copynumber: 3.6 Consensus size: 50
93632703 AAAACTGTGA
*
93632713 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGG
1 TCACCTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGG
*
93632763 TCACCTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGG
1 TCACCTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGG
* * **
93632813 TCACCTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT-GG
1 TCACCTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGG
* * *
93632862 TCGCATGTGTAGTACTATGTGCAGGCTACTA
1 TCACCTGTGTAGTACTAAGTGCAGGCTACTA
93632893 TGCGTACCAG
Statistics
Matches: 121, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
49 29 0.24
50 92 0.76
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (50 bp):
TCACCTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGG
Found at i:93642829 original size:48 final size:48
Alignment explanation
Indices: 93642756--93643040 Score: 263
Period size: 48 Copynumber: 6.0 Consensus size: 48
93642746 GACATTTGGG
* *
93642756 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
** * * * * *
93642804 CAATATGAGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGGCAA
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * *
93642852 TGTTGTGAGAGCCAATGTAAGACCATGTCTAGGACATGGCATCGG-CA
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * * *
93642899 TTGATACGTGTGCTAGTGTAAGACTATATCTGGGACATGGCATC-GACA
1 -TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * *
93642947 TTGAGACGAGAGCTAGTGTAAAACCATGTCTGGGACATGGCATCTGCC-
1 -TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * *
93642995 TCGACATGTGAGCTAGTGTAAGACCGTGT-TAGGACATGGCATCGGC
1 T-GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
93643041 AATTCACCCT
Statistics
Matches: 190, Mismatches: 43, Indels: 9
0.79 0.18 0.04
Matches are distributed among these distances:
47 18 0.09
48 170 0.89
49 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
Found at i:93642937 original size:96 final size:95
Alignment explanation
Indices: 93642771--93643043 Score: 298
Period size: 96 Copynumber: 2.9 Consensus size: 95
93642761 TGTGTGCTAG
* * *
93642771 TGTAAGACCATGTCTGGGACATGGCATCGGCCA-CAATATGAGAGCCAGTGTAAGACCATATTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGG-CATCGATATGTGAGCTAGTGTAAGACCATA-TTG
* * *
93642835 GAACATGGCATCGGCAATGTTG-TGAGAGCCAA
64 GGACATGGCATCGGCAATG-AGACGAGAGCCAA
* * * * *
93642867 TGTAAGACCATGTCTAGGACATGGCATCGGCATTGATACGTGTGCTAGTGTAAGACTATATCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCTAGTGTAAGACCATAT-TGG
* * * *
93642932 GACATGGCATCGACATTGAGACGAGAGCTAG
65 GACATGGCATCGGCAATGAGACGAGAGCCAA
* * * * * * *
93642963 TGTAAAACCATGTCTGGGACATGGCATCTGCCTCGACATGTGAGCTAGTGTAAGACCGTGTTAGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCTAGTGTAAGACCATATTGGG
93643028 ACATGGCATCGGCAAT
66 ACATGGCATCGGCAAT
93643044 TCACCCTCTT
Statistics
Matches: 145, Mismatches: 29, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
95 21 0.14
96 124 0.86
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (95 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCTAGTGTAAGACCATATTGGG
ACATGGCATCGGCAATGAGACGAGAGCCAA
Found at i:93643016 original size:144 final size:143
Alignment explanation
Indices: 93642756--93643041 Score: 333
Period size: 144 Copynumber: 2.0 Consensus size: 143
93642746 GACATTTGGG
* * * * *
93642756 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTG
1 TGATACGTGTGCTAGTGTAAGACCATATCTGGGACATGGCATCGGACACAAGACGAGAGCCAGTG
* * ***
93642821 TAAGACCATATTTGGAACATGGCATCGGCAATGTTGTGAGAGCCAATGTAAGACCATGTCTAGGA
66 TAAAACCATATCTGGAACATGGCATCGGCAATGACATGAGAGCCAATGTAAGACCATGT-TAGGA
93642886 CATGGCATCGGCAT
130 CATGGCATCGGCAT
* ** *
93642900 TGATACGTGTGCTAGTGTAAGACTATATCTGGGACATGGCATC-GACATTGAGACGAGAGCTAGT
1 TGATACGTGTGCTAGTGTAAGACCATATCTGGGACATGGCATCGGACA-CAAGACGAGAGCCAGT
* * * * * * * *
93642964 GTAAAACCATGTCTGGGACATGGCATCTGC-CTCGACATGTGAGCTAGTGTAAGACCGTGTTAGG
65 GTAAAACCATATCTGGAACATGGCATCGGCAAT-GACATGAGAGCCAATGTAAGACCATGTTAGG
93643028 ACATGGCATCGGCA
129 ACATGGCATCGGCA
93643042 ATTCACCCTC
Statistics
Matches: 118, Mismatches: 22, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
143 22 0.19
144 96 0.81
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (143 bp):
TGATACGTGTGCTAGTGTAAGACCATATCTGGGACATGGCATCGGACACAAGACGAGAGCCAGTG
TAAAACCATATCTGGAACATGGCATCGGCAATGACATGAGAGCCAATGTAAGACCATGTTAGGAC
ATGGCATCGGCAT
Found at i:93645662 original size:20 final size:20
Alignment explanation
Indices: 93645637--93645677 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
93645627 AAGATCCCAT
93645637 TTCTCGTGAGAAGTGACCTA
1 TTCTCGTGAGAAGTGACCTA
93645657 TTCTCGTGAGAAGTGACCTA
1 TTCTCGTGAGAAGTGACCTA
93645677 T
1 T
93645678 CCATTGTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (20 bp):
TTCTCGTGAGAAGTGACCTA
Found at i:93653429 original size:5 final size:5
Alignment explanation
Indices: 93653419--93653487 Score: 50
Period size: 5 Copynumber: 12.8 Consensus size: 5
93653409 AAACCTATTA
* *
93653419 TTTAT TTTAT TTTAT TTTATT TTTAT CTCTATAT TTTGAA ATTAT TCTT-T
1 TTTAT TTTAT TTTAT TTTA-T TTTAT -T-T-TAT TTT-AT TTTAT T-TTAT
*
93653469 TTTAT TTTAT TTTCT TTTA
1 TTTAT TTTAT TTTAT TTTA
93653488 ATACTATTTC
Statistics
Matches: 51, Mismatches: 6, Indels: 14
0.72 0.08 0.20
Matches are distributed among these distances:
4 2 0.04
5 32 0.63
6 12 0.24
7 2 0.04
8 3 0.06
ACGTcount: A:0.20, C:0.06, G:0.01, T:0.72
Consensus pattern (5 bp):
TTTAT
Found at i:93656923 original size:40 final size:40
Alignment explanation
Indices: 93656831--93656931 Score: 114
Period size: 40 Copynumber: 2.5 Consensus size: 40
93656821 AAGCTATCTT
* *
93656831 AATATCGCACACTTAGTGCCATATATAGTCGAAGCTATTCC
1 AATA-CGCACACTAAGTGCCATATATAGCCGAAGCTATTCC
* * * **
93656872 AATTCGTACACTAAGTGCTATATATAGCCGAAGCTATTTTG
1 AATACGCACACTAAGTGCCATATATAGCCGAAGCTA-TTCC
93656913 AA-ACGCACACTAAGTGCCA
1 AATACGCACACTAAGTGCCA
93656932 AACATAGTTA
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
40 42 0.86
41 7 0.14
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.28
Consensus pattern (40 bp):
AATACGCACACTAAGTGCCATATATAGCCGAAGCTATTCC
Found at i:93658949 original size:34 final size:34
Alignment explanation
Indices: 93658906--93658974 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
93658896 GTTTCAGCAG
*
93658906 AGTTGACTGAAGAGCAAGAAGAGAAACTCATCCT
1 AGTTGACTGAAGAGAAAGAAGAGAAACTCATCCT
93658940 AGTTGACTGAAGAGAAAGAAGAGAAACTCATCCT
1 AGTTGACTGAAGAGAAAGAAGAGAAACTCATCCT
93658974 A
1 A
93658975 CTATTGAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.43, C:0.16, G:0.23, T:0.17
Consensus pattern (34 bp):
AGTTGACTGAAGAGAAAGAAGAGAAACTCATCCT
Found at i:93662165 original size:22 final size:19
Alignment explanation
Indices: 93662135--93662178 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
93662125 TGATAATAAC
93662135 TAATATATAATTATATTTATTA
1 TAATATAT-ATTA-A-TTATTA
*
93662157 TAATGTATATTAATTATTA
1 TAATATATATTAATTATTA
93662176 TAA
1 TAA
93662179 ACTTTGTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 9 0.43
20 1 0.05
21 4 0.19
22 7 0.33
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:93662167 original size:16 final size:15
Alignment explanation
Indices: 93662135--93662173 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
93662125 TGATAATAAC
93662135 TAATATATAATTATAT
1 TAAT-TATAATTATAT
*
93662151 TTATTATAATGTATAT
1 TAATTATAAT-TATAT
93662167 TAATTAT
1 TAATTAT
93662174 TATAAACTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
TAATTATAATTATAT
Found at i:93662924 original size:24 final size:23
Alignment explanation
Indices: 93662897--93662950 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 23
93662887 TTTTCTCCTA
*
93662897 AATTTT-AATTTTATTTAATTATTT
1 AATTTTCAA-TTTATTGAATTA-TT
93662921 AATTTTTCAATTTATTGAATTATT
1 AA-TTTTCAATTTATTGAATTATT
93662945 AATTTT
1 AATTTT
93662951 TTATACTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 4 0.15
24 6 0.22
25 15 0.56
26 2 0.07
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (23 bp):
AATTTTCAATTTATTGAATTATT
Found at i:93665749 original size:172 final size:171
Alignment explanation
Indices: 93665450--93665792 Score: 517
Period size: 172 Copynumber: 2.0 Consensus size: 171
93665440 TAAAACCAAA
* *
93665450 TTGGTAGGGATTTAACATCTATTTATTTAGAAAACATTTATTCTATTTTTTTATAATAATAATAA
1 TTGGTAGGGATTTAACATCTATTTATTTAGAAAACATTTAGTCTATTTTTTTATAATAAAAATAA
93665515 TTGAGATTAATTTGAAGATATGTATACTTAAGTGGCATAAATCTCTAAAAAAAAATTTCTTGAGC
66 TTGAGATTAATTTGAAGATATGTATACTTAAGTGGCATAAA-CTCTAAAAAAAAATTTCTTGAGC
* *
93665580 ATAAGTATACTGAATTCATAATTATGGGAAGAATGTTTTCTG
130 ATAAGTATACTAAATTCATAATTATAGGAAGAATGTTTTCTG
* * *
93665622 TTGGTAGGGATTTAACATGTCTTTATTTAGAAAACATTTAGTCTATTTTTTTTATCATAAAAATA
1 TTGGTAGGGATTTAACATCTATTTATTTAGAAAACATTTAGTCTA-TTTTTTTATAATAAAAATA
* * ****
93665687 ATTGAGATTAATTTGAATATATGTATACTTAAGTGGCATAAA-TCTGAAAATTTTTGTTCTTGAG
65 ATTGAGATTAATTTGAAGATATGTATACTTAAGTGGCATAAACTCTAAAAAAAAAT-TTCTTGAG
* *
93665751 CATAAGTGTACTAAATTCATGATTATAGGAAGAATGTTTTCT
129 CATAAGTATACTAAATTCATAATTATAGGAAGAATGTTTTCT
93665793 AAAGGAATTT
Statistics
Matches: 154, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
171 8 0.05
172 88 0.57
173 58 0.38
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.42
Consensus pattern (171 bp):
TTGGTAGGGATTTAACATCTATTTATTTAGAAAACATTTAGTCTATTTTTTTATAATAAAAATAA
TTGAGATTAATTTGAAGATATGTATACTTAAGTGGCATAAACTCTAAAAAAAAATTTCTTGAGCA
TAAGTATACTAAATTCATAATTATAGGAAGAATGTTTTCTG
Found at i:93667991 original size:15 final size:15
Alignment explanation
Indices: 93667967--93668000 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
93667957 AACAATTACG
* *
93667967 ATAATGCGAGTAAAA
1 ATAATACGAGCAAAA
93667982 ATAATACGAGCAAAA
1 ATAATACGAGCAAAA
93667997 ATAA
1 ATAA
93668001 CAAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.09, G:0.15, T:0.18
Consensus pattern (15 bp):
ATAATACGAGCAAAA
Found at i:93669558 original size:15 final size:15
Alignment explanation
Indices: 93669538--93669571 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
93669528 TTTATTTTTG
* *
93669538 TTATTTTTGCTCGTA
1 TTATTTTTACTCGCA
93669553 TTATTTTTACTCGCA
1 TTATTTTTACTCGCA
93669568 TTAT
1 TTAT
93669572 CGTAATTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.15, G:0.09, T:0.59
Consensus pattern (15 bp):
TTATTTTTACTCGCA
Found at i:93671538 original size:62 final size:62
Alignment explanation
Indices: 93671472--93671655 Score: 323
Period size: 62 Copynumber: 3.0 Consensus size: 62
93671462 CACGTATCTC
*
93671472 TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
*
93671534 TTCATGCATTAACATTACATTTTATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
* * *
93671596 TTCATGCATCAACATTACATTTCATTGCATACAATAAATTTCCTAAAATCCAAAAGTACG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACG
93671656 TCGAGTTTAG
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 116 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (62 bp):
TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
Found at i:93672915 original size:11 final size:11
Alignment explanation
Indices: 93672889--93672946 Score: 71
Period size: 11 Copynumber: 5.1 Consensus size: 11
93672879 AGTGGAGGCC
93672889 CAAAAAAAAGAA
1 CAAAAAAAA-AA
*
93672901 CAAATAAAAAA
1 CAAAAAAAAAA
*
93672912 CAAATAAAAAA
1 CAAAAAAAAAA
*
93672923 CAAAAGCAAAAA
1 CAAAA-AAAAAA
93672935 CAAAAAAAAAA
1 CAAAAAAAAAA
93672946 C
1 C
93672947 TCTACCAGGA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
11 23 0.56
12 18 0.44
ACGTcount: A:0.81, C:0.12, G:0.03, T:0.03
Consensus pattern (11 bp):
CAAAAAAAAAA
Found at i:93672920 original size:23 final size:22
Alignment explanation
Indices: 93672889--93672946 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 22
93672879 AGTGGAGGCC
93672889 CAAAAAAAAGAACAAATA-AAAAA
1 CAAAAAAAA-AACAAA-ACAAAAA
*
93672912 CAAATAAAAAACAAAAGCAAAAA
1 CAAAAAAAAAACAAAA-CAAAAA
93672935 CAAAAAAAAAAC
1 CAAAAAAAAAAC
93672947 TCTACCAGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 1 0.03
22 6 0.19
23 24 0.77
ACGTcount: A:0.81, C:0.12, G:0.03, T:0.03
Consensus pattern (22 bp):
CAAAAAAAAAACAAAACAAAAA
Found at i:93672934 original size:7 final size:6
Alignment explanation
Indices: 93672889--93672946 Score: 52
Period size: 6 Copynumber: 10.2 Consensus size: 6
93672879 AGTGGAGGCC
* * *
93672889 CAAAAA -AAAGAA CAAATA -AAAAA CAAATA -AAAAA CAAAAG CAAAAA
1 CAAAAA CAAA-AA CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA
93672935 CAAAAA -AAAAA C
1 CAAAAA CAAAAA C
93672947 TCTACCAGGA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
5 16 0.39
6 22 0.54
7 3 0.07
ACGTcount: A:0.81, C:0.12, G:0.03, T:0.03
Consensus pattern (6 bp):
CAAAAA
Found at i:93673923 original size:108 final size:108
Alignment explanation
Indices: 93673734--93673929 Score: 329
Period size: 108 Copynumber: 1.8 Consensus size: 108
93673724 TTTGTATTCT
*
93673734 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAATTTTCATCTT
1 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTT
93673799 ATCCATTGTGATAATCTTTTTCATCTTATTCATCTCGTATCTC
66 ATCCATTGTGATAATCTTTTTCATCTTATTCATCTCGTATCTC
* ** *
93673842 AGCAAAATTTGCTATCTTGATTGATTTGTTTGTTTAGAGCTTTGCTCTCAACAAAATTTCATTTT
1 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTT
* *
93673907 GTCCATTTTGATAATCTTTTTCA
66 ATCCATTGTGATAATCTTTTTCA
93673930 AGCATTTTTC
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
108 81 1.00
ACGTcount: A:0.25, C:0.17, G:0.11, T:0.47
Consensus pattern (108 bp):
AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTT
ATCCATTGTGATAATCTTTTTCATCTTATTCATCTCGTATCTC
Found at i:93674670 original size:95 final size:95
Alignment explanation
Indices: 93674379--93675239 Score: 1535
Period size: 95 Copynumber: 9.0 Consensus size: 95
93674369 GCAGCGAAGC
*
93674379 AGATCAAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCTGATAACTCTA
1 AGATC-AAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
*
93674444 TCTCCCTACATTTGGCAGTGGAATAGATTGA
65 TCTCCCTGCATTTGGCAGTGGAATAGATTGA
* *
93674475 AGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTA-ATTAAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
93674539 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
*
93674569 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAACCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
93674634 CTCCATGCATTTGGCATTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
* *
93674664 AGATCAAATATGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
93674729 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
*
93674759 AGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
93674824 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
93674854 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
93674919 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
*
93674949 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAATACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
93675014 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
*
93675044 AGATCAAAGATAGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
93675109 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
** *
93675139 AGATCAAAGATGGCAGATTTTACCTCTATGTGACTACAGTGGAATACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTC--CCTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
*
93675204 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
64 ATCTCCCTGCATTTGGCAGTGGAATAGATTGA
93675236 AGAT
1 AGAT
93675240 TGCAGATCTT
Statistics
Matches: 738, Mismatches: 24, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
94 90 0.12
95 573 0.78
96 5 0.01
97 70 0.09
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGCATTTGGCAGTGGAATAGATTGA
Found at i:93675296 original size:231 final size:228
Alignment explanation
Indices: 93675044--93675467 Score: 740
Period size: 231 Copynumber: 1.8 Consensus size: 228
93675034 AATAGATTGA
*
93675044 AGATCAAAGATAGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATAGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
**
93675109 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCTATGTGACT
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTC--CCTGACT
* *
93675174 ACAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
129 ACAGTGGAATA-ATTAAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGA
93675239 TTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
193 TTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
* *
93675275 AGATCAAAGATGGCGGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATAGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
93675340 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAATATGGCAGATTTTACCTCCCTGACTAC
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
*
93675405 AGTGGAGTAATTAAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGAT
131 AGTGGAATAATTAAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGAT
93675468 CAAAGATGGC
Statistics
Matches: 184, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
228 52 0.28
229 15 0.08
231 117 0.64
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (228 bp):
AGATCAAAGATAGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
AGTGGAATAATTAAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATTG
CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
Found at i:93675390 original size:95 final size:95
Alignment explanation
Indices: 93675275--93676134 Score: 1515
Period size: 95 Copynumber: 9.0 Consensus size: 95
93675265 GCAGCGAAGC
* *
93675275 AGATCAAAGATGGCGGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
93675340 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
* *
93675370 AGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTA-ATTAAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
93675434 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
*
93675464 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAACCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
93675529 CTCCATGCATTTGGCATTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
* *
93675559 AGATCAAATATGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
93675624 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
*
93675654 AGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
93675719 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
93675749 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
93675814 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
*
93675844 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAATACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
93675909 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
*
93675939 AGATCAAAGATAGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
**
93676004 CTCCCTATATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
** *
93676034 AGATCAAAGATGGCAGATTTTACCTCTATGTGACTACAGTGGAATACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTC--CCTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
**
93676099 ATCTCCCTATATTTGGCAGTGGAATAGATTGA
64 ATCTCCCTGCATTTGGCAGTGGAATAGATTGA
93676131 AGAT
1 AGAT
93676135 TGCAGATCTT
Statistics
Matches: 736, Mismatches: 26, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
94 91 0.12
95 575 0.78
97 70 0.10
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.28
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGCATTTGGCAGTGGAATAGATTGA
Found at i:93676114 original size:895 final size:895
Alignment explanation
Indices: 93674339--93676268 Score: 3772
Period size: 895 Copynumber: 2.2 Consensus size: 895
93674329 GAAGTGGATC
*
93674339 GAAGA-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAAGATGGCAGATTTTAC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATC-AAAGATGGCGGATTTTAC
* * **
93674403 CTCCCTGACTACAGTGGAGTACATTGAAGCTGATAACTCTATCTCCCTACATTTGGCAGTGGAAT
65 CTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAAT
93674468 AGATTGAAGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTAATTAAAGCCGATAA
130 AGATTGAAGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTAATTAAAGCCGATAA
93674533 CTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCT
195 CTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCT
93674598 GACTACAGTGGAGTACATTGAAACCGATAACTCTATCTCCATGCATTTGGCATTGGAATAGATTG
260 GACTACAGTGGAGTACATTGAAACCGATAACTCTATCTCCATGCATTTGGCATTGGAATAGATTG
93674663 AAGATCAAATATGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCCGATAACTCTA
325 AAGATCAAATATGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCCGATAACTCTA
93674728 TCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAATATGGCAGATTTTACCTCCCTGACTA
390 TCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAATATGGCAGATTTTACCTCCCTGACTA
93674793 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGAT
455 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGAT
93674858 CAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCC
520 CAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCC
93674923 CTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTG
585 CTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTG
93674988 GAATACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAG
650 GAATACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAG
*
93675053 ATAGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTA
715 ATAGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTATA
93675118 TTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCTATGTGACTACAGTGGAA
780 TTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCTATGTGACTACAGTGGAA
*
93675183 TACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATT
845 TACATTGAAGCCGATAACTCTATCTCCCTATATTTGGCAGTGGAATAGATT
93675234 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCGGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCGGATTTTACC
93675299 TCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
66 TCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
93675364 GATTGAAGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTAATTAAAGCCGATAAC
131 GATTGAAGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTAATTAAAGCCGATAAC
93675429 TCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTG
196 TCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTG
93675494 ACTACAGTGGAGTACATTGAAACCGATAACTCTATCTCCATGCATTTGGCATTGGAATAGATTGA
261 ACTACAGTGGAGTACATTGAAACCGATAACTCTATCTCCATGCATTTGGCATTGGAATAGATTGA
93675559 AGATCAAATATGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCCGATAACTCTAT
326 AGATCAAATATGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCCGATAACTCTAT
93675624 CTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAATATGGCAGATTTTACCTCCCTGACTAC
391 CTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAATATGGCAGATTTTACCTCCCTGACTAC
93675689 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATC
456 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATC
93675754 AAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCC
521 AAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCC
93675819 TGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGG
586 TGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGG
93675884 AATACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGA
651 AATACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGA
93675949 TAGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTATAT
716 TAGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTATAT
93676014 TTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCTATGTGACTACAGTGGAAT
781 TTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCTATGTGACTACAGTGGAAT
93676079 ACATTGAAGCCGATAACTCTATCTCCCTATATTTGGCAGTGGAATAGATT
846 ACATTGAAGCCGATAACTCTATCTCCCTATATTTGGCAGTGGAATAGATT
93676129 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCGGATTTTACC
1 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCGGATTTTACC
*
93676194 CCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
66 TCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
93676259 GATTGAAGAT
131 GATTGAAGAT
93676269 TGCAGATCTT
Statistics
Matches: 1026, Mismatches: 8, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
895 986 0.96
896 40 0.04
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.28
Consensus pattern (895 bp):
GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCGGATTTTACC
TCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATA
GATTGAAGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTAATTAAAGCCGATAAC
TCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTG
ACTACAGTGGAGTACATTGAAACCGATAACTCTATCTCCATGCATTTGGCATTGGAATAGATTGA
AGATCAAATATGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAATATGGCAGATTTTACCTCCCTGACTAC
AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATC
AAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCC
TGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGG
AATACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGA
TAGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTATAT
TTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCTATGTGACTACAGTGGAAT
ACATTGAAGCCGATAACTCTATCTCCCTATATTTGGCAGTGGAATAGATT
Found at i:93676226 original size:134 final size:134
Alignment explanation
Indices: 93676034--93676952 Score: 1523
Period size: 134 Copynumber: 6.8 Consensus size: 134
93676024 AATAGATTGA
* *** *
93676034 AGATCAAAGATGGCAGATTTTACCTCTATGTGACTACAGTGGAATACATTGAAGCCGATAACTCT
1 AGATCGAAGATGGCAGATTTTACC-C-CCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
93676099 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
93676164 CGAAGC
129 CGAAGC
* * *
93676170 AGATCAAAGATGGCGGATTTTACCCCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCCCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
93676235 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTATATTTGGCAGCG
66 CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
93676300 AAGC
131 AAGC
**
93676304 AGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCGAAGATGGCAGATTTTACC-CC-CCTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
93676369 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
93676434 CGAAGC
129 CGAAGC
* *
93676440 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCGAAGATGGCAGATTTTACCCCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
93676505 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTTCCTTCCTGTATTTGGCAGCG
66 CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
93676570 AAGC
131 AAGC
* *
93676574 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCGAAGATGGCAGATTTTACCCCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
93676639 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTTCCTTCCTGTATTTGGCAGCG
66 CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
93676704 AAGC
131 AAGC
** *
93676708 AGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAATGGAGTACATTGAAGCCGATAACTCT
1 AGATCGAAGATGGCAGATTTTACC-CC-CCTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
93676773 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
93676838 CGAAGC
129 CGAAGC
* * *
93676844 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTATATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCCCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
** *
93676909 CTCCCTATATTTAACAGTGGAATAGATTGAAGATTACAGATCTT
66 CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTT
93676953 ATCTCCCTAA
Statistics
Matches: 742, Mismatches: 37, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
134 461 0.62
135 6 0.01
136 275 0.37
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (134 bp):
AGATCGAAGATGGCAGATTTTACCCCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGC
Found at i:93676449 original size:46 final size:45
Alignment explanation
Indices: 93676101--93676873 Score: 236
Period size: 46 Copynumber: 17.2 Consensus size: 45
93676091 ATAACTCTAT
* * *
93676101 CTCCCTATATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAG-CGAAGTAGATTGAAGATGGCAGATCTT-C
* * ** * *
93676147 CTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCGGATTTTAC
1 CTCCCTGTATTTGGCAGCGAAGTAGATTGAAGATGGCAGATCTT-C
* *** * * * ** **
93676193 CCCCCTG-A--CCACAGTGGAGTACATTGAAGCCGATA-ACTCTAT-
1 CTCCCTGTATTTGGCAGCGAAGTAGATTGAAGATGGCAGA-TCT-TC
* *
93676235 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAG-CGAAGTAGATTGAAGATGGCAGATCTT-C
* * * * *
93676281 CTTCCTATATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGCGAAGTAGATTGAAGATGGCAGATCTT-C
* * * * * * ** **
93676327 CTCCATGTGA-CT-ACAGTGGAGTACATTGAAGCCGATA-ACTCTAT-
1 CTCCCTGT-ATTTGGCAGCGAAGTAGATTGAAGATGGCAGA-TCT-TC
* * *
93676371 CTCCCTATATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAG-CGAAGTAGATTGAAGATGGCAGATCTT-C
* * * *
93676417 CTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGCGAAGTAGATTGAAGATGGCAGATCTT-C
* * * * * ** **
93676463 CTCCCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-ATTCTAT-
1 CTCCCTGTATTTGGCAGCGAAGTAGATTGAAGATGGCAGA-TCT-TC
* *
93676505 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTTC
1 CTCCCTGTATTTGGCAG-CGAAGTAGATTGAAGATGGCAGATC-TTC
* * * *
93676551 CTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGCGAAGTAGATTGAAGATGGCAGATCTT-C
* * * * * ** **
93676597 CTCCCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-ATTCTAT-
1 CTCCCTGTATTTGGCAGCGAAGTAGATTGAAGATGGCAGA-TCT-TC
* *
93676639 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTTC
1 CTCCCTGTATTTGGCAG-CGAAGTAGATTGAAGATGGCAGATC-TTC
* * * *
93676685 CTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGCGAAGTAGATTGAAGATGGCAGATCTT-C
* * * ** * * ** **
93676731 CTCCATGTGA-CT-ACAATGGAGTACATTGAAGCCGATA-ACTCTAT-
1 CTCCCTGT-ATTTGGCAGCGAAGTAGATTGAAGATGGCAGA-TCT-TC
* * *
93676775 CTCCCTATATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAG-CGAAGTAGATTGAAGATGGCAGATCTT-C
* * ** *
93676821 CTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGCGAAGTAGATTGAAGATGGCAGATCTT-C
93676867 CTCCCTG
1 CTCCCTG
93676874 ACTACAGTGG
Statistics
Matches: 496, Mismatches: 178, Indels: 106
0.64 0.23 0.14
Matches are distributed among these distances:
42 23 0.05
43 54 0.11
44 26 0.05
45 137 0.28
46 254 0.51
47 2 0.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (45 bp):
CTCCCTGTATTTGGCAGCGAAGTAGATTGAAGATGGCAGATCTTC
Found at i:93676521 original size:270 final size:268
Alignment explanation
Indices: 93676034--93676952 Score: 1577
Period size: 270 Copynumber: 3.4 Consensus size: 268
93676024 AATAGATTGA
** *
93676034 AGATCAAAGATGGCAGATTTTACCTCTATGTGACTACAGTGGAATACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTC--CCTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
93676099 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
* * * *
93676164 CGAAGCAGATCAAAGATGGCGGATTTTACCCCCCTGACCACAGTGGAGTACATTGAAGCCGATAA
129 CGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAA
*
93676229 CTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTATATTTG
194 CTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTG
93676294 GCAGCGAAGC
259 GCAGCGAAGC
* *
93676304 AGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
93676369 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
93676434 CGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAA
129 CGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAA
* *
93676499 TTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTTCCTTCCTGTATTTG
194 CTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTG
93676564 GCAGCGAAGC
259 GCAGCGAAGC
* *
93676574 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
93676639 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTTCCTTCCTGTATTTGGCAGCG
66 CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
* *
93676704 AAGCAGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAATGGAGTACATTGAAGCCGATAA
131 AAGCAGATCGAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAA
*
93676769 CTCTATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTG
194 CTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTG
93676834 GCAGCGAAGC
259 GCAGCGAAGC
*
93676844 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTATATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
** *
93676909 CTCCCTATATTTAACAGTGGAATAGATTGAAGATTACAGATCTT
66 CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTT
93676953 ATCTCCCTAA
Statistics
Matches: 619, Mismatches: 26, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
268 130 0.21
270 489 0.79
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (268 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACT
CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGC
AGCGAAGC
Found at i:93676813 original size:404 final size:404
Alignment explanation
Indices: 93676034--93676952 Score: 1649
Period size: 404 Copynumber: 2.3 Consensus size: 404
93676024 AATAGATTGA
** *
93676034 AGATCAAAGATGGCAGATTTTACCTCTATGTGACTACAGTGGAATACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTC--CCTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
93676099 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
*
93676164 CGAAGCAGATCAAAGATGGCGGATTTTACCCCCCTGACCACAGTGGAGTACATTGAAGCCGATAA
129 CGAAGCAGATCAAAGATGGCAGATTTTACCCCCCTGACCACAGTGGAGTACATTGAAGCCGATAA
93676229 CTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTATATTTG
194 CTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTATATTTG
*
93676294 GCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGC
259 GCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAATGGAGTACATTGAAGC
93676359 CGATAACTCTATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTG
324 CGATAACTCTATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTG
93676424 TATTTGGCAGCGAAGC
389 TATTTGGCAGCGAAGC
* *
93676440 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
93676505 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTTCCTTCCTGTATTTGGCAGCG
66 CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
* * * *
93676570 AAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATT
131 AAGCAGATCAAAGATGGCAGATTTTACCCCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
* *
93676635 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTTCCTTCCTGTATTTGGC
196 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTATATTTGGC
93676700 AGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAATGGAGTACATTGAAGCCG
261 AGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAATGGAGTACATTGAAGCCG
93676765 ATAACTCTATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTA
326 ATAACTCTATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTA
93676830 TTTGGCAGCGAAGC
391 TTTGGCAGCGAAGC
*
93676844 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTATATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
** *
93676909 CTCCCTATATTTAACAGTGGAATAGATTGAAGATTACAGATCTT
66 CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTT
93676953 ATCTCCCTAA
Statistics
Matches: 491, Mismatches: 22, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
404 466 0.95
406 25 0.05
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (404 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGCAGATCAAAGATGGCAGATTTTACCCCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTATATTTGGC
AGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAATGGAGTACATTGAAGCCG
ATAACTCTATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTA
TTTGGCAGCGAAGC
Found at i:93677226 original size:258 final size:260
Alignment explanation
Indices: 93676309--93677329 Score: 788
Period size: 270 Copynumber: 3.9 Consensus size: 260
93676299 GAAGCAGATC
* *
93676309 GAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
1 GAAGACGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTC
***** * * ** * * * * *
93676374 CCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCT--GTATTTGGCAGCGA
64 CC-ATAGGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCA-AT---AGTGG
* * * * * * * *
93676437 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTC
124 AGCAGGTCGAAGACGGCGGATTTTACCTCCCTAATTACAGTGGAGTACATTGAAGCTGGTAGTTC
* *** * ** * * * *
93676502 TATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTTCCTTCCT--GTATTTGG
189 TATCTCCCTGGA--CAACAGTGGAATAGATCGAAGATTATAGATCTAT-CTCCCTAAGCA-AT--
* * * *
93676565 CAGCGAAGCAGATC
248 -AGTGGAGCAGGTT
* *
93676579 GAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCC
1 GAAGACGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCC
* ***** * * * * * * *
93676644 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTT-TCCTTCCT--GTATTTGGCAGCGAA
66 -ATAGGCAACAGTGGAATAGATCGAAGATTACAGATCTTAT-CTCCCTAAGCA-AT---AGTGGA
* * * * * * * * * **
93676706 GCAGATCGAAGATGGCAGATTTTACCTCCATGTGACTACAATGGAGTACATTGAAGCCGATAACT
125 GCAGGTCGAAGACGGCGGATTTTACCTCC--CTAATTACAGTGGAGTACATTGAAGCTGGTAGTT
** *** * ** * * *
93676771 CTATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TGCCTTCCT--GTATTT
188 CTATCTCCCTGGA--CAACAGTGGAATAGATCGAAGATTATAGATCTAT--CTCCCTAAGCA-AT
* * * *
93676833 GGCAGCGAAGCAGATC
248 ---AGTGGAGCAGGTT
* * *
93676849 AAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTATATTGAAGCCGATAACTCTATCTCCC
1 GAAGACGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCC
*** *
93676914 TATATTTAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGG
66 -ATAGGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGG
* * *
93676979 TCGAAGACGGCGGATTTTACCTCCCTGATTAGAGT-GAGTACATTGAAGCTGGTAGTTCTATCTT
130 TCGAAGACGGCGGATTTTACCTCCCTAATTACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTC
*
93677043 CCTGGGCAACAGTGGAATAGATCGAAGATTATAGATCTATCTCCCTAAGCAATAGTGGAGCAGGT
195 CCTGGACAACAGTGGAATAGATCGAAGATTATAGATCTATCTCCCTAAGCAATAGTGGAGCAGGT
93677108 T
260 T
* * * * **
93677109 GAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCCC
1 GAAGACGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCC
*
93677174 -TGGGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGT
66 ATAGGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGT
93677238 CGAAGACGGCGGATTTTACCTCCCTAATTACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCC
131 CGAAGACGGCGGATTTTACCTCCCTAATTACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCC
*
93677303 CTGGATAACAGTGGAATAGATCGAAGA
196 CTGGACAACAGTGGAATAGATCGAAGA
93677330 AAACAACATT
Statistics
Matches: 673, Mismatches: 67, Indels: 33
0.87 0.09 0.04
Matches are distributed among these distances:
258 91 0.14
259 54 0.08
260 65 0.10
262 5 0.01
263 27 0.04
264 3 0.00
265 27 0.04
266 7 0.01
268 159 0.24
269 1 0.00
270 230 0.34
271 2 0.00
272 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (260 bp):
GAAGACGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCC
ATAGGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGT
CGAAGACGGCGGATTTTACCTCCCTAATTACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCC
CTGGACAACAGTGGAATAGATCGAAGATTATAGATCTATCTCCCTAAGCAATAGTGGAGCAGGTT
Found at i:93677261 original size:44 final size:44
Alignment explanation
Indices: 93677083--93677264 Score: 109
Period size: 44 Copynumber: 4.2 Consensus size: 44
93677073 ATAGATCTAT
* * *
93677083 CTCCCTAAGCAATAGTGGAGCAGGTTGAAGACGGCGGATTTTAC
1 CTCCCTAAGCAACAGTGGAGCAGATCGAAGACGGCGGATTTTAC
* ** * * * * * * *
93677127 CTCCCTGA-TTACAGTGGAGTACATTGAAG-CTG-GTAGTTCTAT
1 CTCCCTAAGCAACAGTGGAGCAGATCGAAGACGGCGGA-TTTTAC
** ** *** * * *
93677169 CTCCCTGGGCAACAGTGGAATAGATCGAAGATTACAGATCTTAT
1 CTCCCTAAGCAACAGTGGAGCAGATCGAAGACGGCGGATTTTAC
* *
93677213 CTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGGCGGATTTTAC
1 CTCCCTAAGCAACAGTGGAGCAGATCGAAGACGGCGGATTTTAC
93677257 CTCCCTAA
1 CTCCCTAA
93677265 TTACAGTGGA
Statistics
Matches: 99, Mismatches: 35, Indels: 8
0.70 0.25 0.06
Matches are distributed among these distances:
41 2 0.02
42 13 0.13
43 31 0.31
44 52 0.53
45 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (44 bp):
CTCCCTAAGCAACAGTGGAGCAGATCGAAGACGGCGGATTTTAC
Found at i:93677276 original size:130 final size:130
Alignment explanation
Indices: 93676841--93677329 Score: 748
Period size: 130 Copynumber: 3.8 Consensus size: 130
93676831 TTGGCAGCGA
* * * * * * * * **
93676841 AGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTATATTGAAGCCGATAACTC
1 AGCAGGTCGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTC
**** *
93676906 TATCTCCCTATATTTAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAATAGT
66 TATCTCCC--TGGGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGT
93676971 GG
129 GG
*
93676973 AGCAGGTCGAAGACGGCGGATTTTACCTCCCTGATTAGAGT-GAGTACATTGAAGCTGGTAGTTC
1 AGCAGGTCGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTC
* *
93677037 TATCTTCCTGGGCAACAGTGGAATAGATCGAAGATTATAGATC-TATCTCCCTAAGCAATAGTGG
66 TATCTCCCTGGGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGG
*
93677101 AGCAGGTTGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTC
1 AGCAGGTCGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTC
93677166 TATCTCCCTGGGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGG
66 TATCTCCCTGGGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGG
*
93677231 AGCAGGTCGAAGACGGCGGATTTTACCTCCCTAATTACAGTGGAGTACATTGAAGCTGGTAGTTC
1 AGCAGGTCGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTC
**
93677296 TATCTCCCTGGATAACAGTGGAATAGATCGAAGA
66 TATCTCCCTGGGCAACAGTGGAATAGATCGAAGA
93677330 AAACAACATT
Statistics
Matches: 329, Mismatches: 26, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
128 60 0.18
129 93 0.28
130 116 0.35
131 25 0.08
132 35 0.11
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (130 bp):
AGCAGGTCGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGGTAGTTC
TATCTCCCTGGGCAACAGTGGAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGG
Found at i:93677314 original size:43 final size:42
Alignment explanation
Indices: 93677014--93677328 Score: 130
Period size: 43 Copynumber: 7.3 Consensus size: 42
93677004 TGATTAGAGT
* * *
93677014 GAGTACATTGAAGCTGGTAGTTCTATCTTCCTGGGCAACAGTG
1 GAGTAGATTGAAGCTGGTAGTTCTATCTCCCT-GACAACAGTG
* * * ** * * *
93677057 GAATAGATCGAAGATTATAGATCTATCTCCCTAAGCAATAGTG
1 GAGTAGATTGAAGCTGGTAGTTCTATCTCCCTGA-CAACAGTG
* * ** * * **
93677100 GAGCAGGTTGAAGAC-GGCGGATTTTACCTCCCTGATTACAGTG
1 GAGTAGATTGAAG-CTGGTAG-TTCTATCTCCCTGACAACAGTG
* *
93677143 GAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGGCAACAGTG
1 GAGTAGATTGAAGCTGGTAGTTCTATCTCCCT-GACAACAGTG
* * * *** * * *
93677186 GAATAGATCGAAGATTACAGATCTTATCTCCCTAAGCAATAGTG
1 GAGTAGATTGAAGCTGGTAGTTC-TATCTCCCTGA-CAACAGTG
* * * ** * * * **
93677230 GAGCAGGTCGAAGAC-GGCGGATTTTACCTCCCTAATTACAGTG
1 GAGTAGATTGAAG-CTGGTAG-TTCTATCTCCCTGACAACAGTG
* *
93677273 GAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGATAACAGTG
1 GAGTAGATTGAAGCTGGTAGTTCTATCTCCCT-GACAACAGTG
* *
93677316 GAATAGATCGAAG
1 GAGTAGATTGAAG
93677329 AAAACAACAT
Statistics
Matches: 187, Mismatches: 74, Indels: 22
0.66 0.26 0.08
Matches are distributed among these distances:
42 22 0.12
43 116 0.62
44 48 0.26
45 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (42 bp):
GAGTAGATTGAAGCTGGTAGTTCTATCTCCCTGACAACAGTG
Found at i:93678395 original size:11 final size:11
Alignment explanation
Indices: 93678379--93678413 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
93678369 CCCTTCCCCC
93678379 CTCCCTTCTCT
1 CTCCCTTCTCT
93678390 CTCCCTTCTCT
1 CTCCCTTCTCT
93678401 CTTCCC-TCTCT
1 C-TCCCTTCTCT
93678412 CT
1 CT
93678414 TTTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:93678901 original size:3 final size:3
Alignment explanation
Indices: 93678877--93678950 Score: 51
Period size: 3 Copynumber: 24.3 Consensus size: 3
93678867 AATATCCTTG
* * ** **
93678877 TTA TTT TTA -TA TTA TTA GTA TTA TTA GCA TTA CCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
93678924 TTA TGTA TTA GTA TATA TTT TTA TTA T
1 TTA T-TA TTA TTA T-TA TTA TTA TTA T
93678951 GTACGTATAT
Statistics
Matches: 52, Mismatches: 16, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
2 2 0.04
3 44 0.85
4 6 0.12
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:93678961 original size:23 final size:23
Alignment explanation
Indices: 93678916--93678961 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
93678906 TTACCATTAT
*
93678916 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
93678939 TATTTTTATTATGTACGTA-TATA
1 TATTATTATTATGTA-GTAGTATA
93678962 CCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.33, C:0.02, G:0.09, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:93679230 original size:19 final size:19
Alignment explanation
Indices: 93679195--93679231 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
93679185 ATATATTACC
**
93679195 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
93679214 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
93679232 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:93681287 original size:11 final size:10
Alignment explanation
Indices: 93681272--93681379 Score: 80
Period size: 10 Copynumber: 10.6 Consensus size: 10
93681262 TATAAATGTG
93681272 ATTTTTAATA
1 ATTTTTAATA
93681282 ATTTTTTTAATA
1 A--TTTTTAATA
*
93681294 AATTTTAAGTA
1 ATTTTTAA-TA
* *
93681305 ATTCTTATTA
1 ATTTTTAATA
93681315 ATTTTTAAT-
1 ATTTTTAATA
93681324 ATTTTTAAT-
1 ATTTTTAATA
* *
93681333 ATTTTTTACA
1 ATTTTTAATA
93681343 ATTTTTAAT-
1 ATTTTTAATA
93681352 ATCTTTTAA-A
1 AT-TTTTAATA
*
93681362 TATTTTTCATAA
1 -ATTTTTAAT-A
93681374 ATTTTT
1 ATTTTT
93681380 TATTTTTTGC
Statistics
Matches: 78, Mismatches: 11, Indels: 17
0.74 0.10 0.16
Matches are distributed among these distances:
9 18 0.23
10 34 0.44
11 15 0.19
12 11 0.14
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:93681329 original size:9 final size:9
Alignment explanation
Indices: 93681315--93681368 Score: 65
Period size: 9 Copynumber: 5.7 Consensus size: 9
93681305 ATTCTTATTA
93681315 ATTTTTAAT
1 ATTTTTAAT
93681324 ATTTTTAAT
1 ATTTTTAAT
93681333 ATTTTTTACA-
1 A-TTTTTA-AT
93681343 ATTTTTAAT
1 ATTTTTAAT
93681352 ATCTTTTAAAT
1 AT-TTTT-AAT
93681363 ATTTTT
1 ATTTTT
93681369 CATAAATTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
8 1 0.03
9 18 0.45
10 15 0.38
11 6 0.15
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:93681340 original size:19 final size:20
Alignment explanation
Indices: 93681316--93681368 Score: 74
Period size: 19 Copynumber: 2.7 Consensus size: 20
93681306 TTCTTATTAA
93681316 TTTTTAATATTTTTAATAT-
1 TTTTTAATATTTTTAATATC
93681335 TTTTTACA-ATTTTTAATATC
1 TTTTTA-ATATTTTTAATATC
*
93681355 TTTTAAATATTTTT
1 TTTTTAATATTTTT
93681369 CATAAATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 18 0.60
20 12 0.40
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTTTAATATTTTTAATATC
Found at i:93683285 original size:3 final size:3
Alignment explanation
Indices: 93683231--93683266 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
93683221 ATTAAGTTGC
93683231 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
93683267 AAATTTACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:93683968 original size:12 final size:12
Alignment explanation
Indices: 93683951--93683978 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
93683941 ATCTAATTCG
93683951 GTTAATCGGTCA
1 GTTAATCGGTCA
93683963 GTTAATCGGTCA
1 GTTAATCGGTCA
93683975 GTTA
1 GTTA
93683979 GTCGATCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (12 bp):
GTTAATCGGTCA
Found at i:93689227 original size:20 final size:20
Alignment explanation
Indices: 93689186--93689223 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
93689176 CAGTTACAGA
**
93689186 GAAAAATAATTGAAGCAGCT
1 GAAAAATAATTGAAAAAGCT
93689206 GAAAAA-AATTGAAAAAGC
1 GAAAAATAATTGAAAAAGC
93689224 CTGATTTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.58, C:0.08, G:0.18, T:0.16
Consensus pattern (20 bp):
GAAAAATAATTGAAAAAGCT
Found at i:93699309 original size:40 final size:40
Alignment explanation
Indices: 93699254--93699360 Score: 178
Period size: 40 Copynumber: 2.7 Consensus size: 40
93699244 AGCATTGGAT
93699254 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
*
93699294 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
** *
93699334 TATGCCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
93699361 ATGTGTTTGC
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.20
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
Found at i:93707832 original size:40 final size:40
Alignment explanation
Indices: 93707777--93707883 Score: 171
Period size: 40 Copynumber: 2.7 Consensus size: 40
93707767 AGCATTGGAT
93707777 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
*
93707817 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
* *
93707857 TAT-GCCTGGGTTAAGACCCGAAGGCAA
1 TATATCC-GGGCTAAGACCCGAAGGCAA
93707884 ATGTGTTTGC
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
39 2 0.03
40 61 0.97
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.21
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
Found at i:93710507 original size:44 final size:42
Alignment explanation
Indices: 93710440--93710537 Score: 144
Period size: 44 Copynumber: 2.3 Consensus size: 42
93710430 ATATGTGTTA
*
93710440 TCGTGTAAGACCACGTCTGGGATGTTGGCATCG-ACTTATGATT
1 TCGTGTAAGACCACGTCTAGGATGTTGGCATCGTA-TT-TGATT
*
93710483 TACGTGTAAGACCACGTCTAGGATGTTGGCATCGTATTTGGTT
1 T-CGTGTAAGACCACGTCTAGGATGTTGGCATCGTATTTGATT
93710526 TCGTGTAAGACC
1 TCGTGTAAGACC
93710538 CTATCTGGGA
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
42 11 0.22
43 6 0.12
44 33 0.65
45 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTAGGATGTTGGCATCGTATTTGATT
Found at i:93716540 original size:85 final size:85
Alignment explanation
Indices: 93716397--93716574 Score: 338
Period size: 85 Copynumber: 2.1 Consensus size: 85
93716387 GGCCGGCCAT
*
93716397 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAAATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
93716462 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
93716482 GAGCATGGGTGGACAAAATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAAATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
93716547 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
93716567 GGGCATGG
1 GAGCATGG
93716575 ACAATAAAAT
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAAATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:93717897 original size:47 final size:46
Alignment explanation
Indices: 93717843--93718437 Score: 794
Period size: 47 Copynumber: 12.6 Consensus size: 46
93717833 TATTTGAATA
*
93717843 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
93717890 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAA-TG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
93717939 AATGTGAAAGTGTATCTATGTGATAAGGCCTAATAGCCAATGTGATG
1 AATGTGAAA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
93717986 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATATGATG
1 AATGTGAAA-TG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
93718035 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
93718082 AATGTGAACATGTGTATGTGTGATAAGGCTGAATGGCCAATGTGATG
1 AATGTGAA-ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
93718129 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
93718176 AATGTAAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
93718223 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
93718270 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCTATGTGATG
1 AATGTGAA-ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
93718317 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-ATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
93718364 AATGTGAAACTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
93718411 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGT-GAAATGTATATATGTGATAAG
93718438 TCCCGAAGGG
Statistics
Matches: 499, Mismatches: 42, Indels: 14
0.90 0.08 0.03
Matches are distributed among these distances:
46 1 0.00
47 407 0.82
48 3 0.01
49 87 0.17
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (46 bp):
AATGTGAAATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:93722152 original size:6 final size:6
Alignment explanation
Indices: 93722141--93722170 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
93722131 CTTCAAAAAT
93722141 AAATAA AAATAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA
93722171 TATGAGTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:93726703 original size:49 final size:48
Alignment explanation
Indices: 93726631--93726733 Score: 127
Period size: 49 Copynumber: 2.1 Consensus size: 48
93726621 ATGCCCGTGT
* * * * * *
93726631 GACACGCCCGTGTGAGGTGGCTTAGGCCGTATTTAGAGTCTGTTAAATA
1 GACACGACCGTGTGAGGCGGCTTAGGCAGT-GTTACAATCTGTTAAATA
93726680 GACACGACCGTGTG-GTGCGGCTTAGGCAGTGTTACAATCTGTTAAATA
1 GACACGACCGTGTGAG-GCGGCTTAGGCAGTGTTACAATCTGTTAAATA
93726728 GACACG
1 GACACG
93726734 GGCTTGTGGT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
48 22 0.47
49 25 0.53
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.26
Consensus pattern (48 bp):
GACACGACCGTGTGAGGCGGCTTAGGCAGTGTTACAATCTGTTAAATA
Found at i:93730894 original size:43 final size:43
Alignment explanation
Indices: 93730833--93730937 Score: 192
Period size: 43 Copynumber: 2.4 Consensus size: 43
93730823 GAGAAATGCA
93730833 TGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGAT
1 TGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGAT
*
93730876 TGGCACTAAGCGTGCGGGCAATAAGTGTTCACGGTTGTGAGAT
1 TGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGAT
*
93730919 TGACACTAAGTGTGCGGGC
1 TGGCACTAAGTGTGCGGGC
93730938 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (43 bp):
TGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGAT
Found at i:93730957 original size:29 final size:29
Alignment explanation
Indices: 93730922--93730992 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 29
93730912 GTGAGATTGA
* *
93730922 CACTAAGTGTGCGGGCTTGAAA-TGCATGG
1 CACTAAGTGTGCGAG-TTGAAAGTACATGG
*
93730951 CACTAAGTGTGCGAGTTTAAAGTACATGG
1 CACTAAGTGTGCGAGTTGAAAGTACATGG
93730980 CACTAAGTGTGCG
1 CACTAAGTGTGCG
93730993 TGGTTGATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 5 0.13
29 33 0.87
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
CACTAAGTGTGCGAGTTGAAAGTACATGG
Found at i:93731430 original size:40 final size:40
Alignment explanation
Indices: 93731386--93731499 Score: 140
Period size: 40 Copynumber: 2.9 Consensus size: 40
93731376 TTACTAAATT
*
93731386 CGGGCTAAGTTCCTAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTTCCTAAGAGCATTCATGCTAGTGATATATC
*
93731426 CGGGCTAAGTT-CTGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTTCCT-AAGAGCATTCATGCTAGTGATATATC
* * * * * *
93731466 CGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 CGGGCTAAGTTCCTAAGAGCATTCATGCTAGTGA
93731500 CGTGTATTCG
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.03
40 60 0.95
41 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTTCCTAAGAGCATTCATGCTAGTGATATATC
Found at i:93734839 original size:47 final size:47
Alignment explanation
Indices: 93734691--93734815 Score: 216
Period size: 47 Copynumber: 2.7 Consensus size: 47
93734681 TTAGGATTCT
* *
93734691 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
93734738 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
93734785 ATGTGATGAATGTGAAAGTGTATATATGTGA
1 ATGTGATGAATGTGAAAGTGTATATATGTGA
93734816 CAGGGCCGAG
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
46 1 0.01
47 74 0.99
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:93735040 original size:37 final size:37
Alignment explanation
Indices: 93734984--93735062 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
93734974 CCGAGCTCTA
* * *
93734984 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
93735021 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
93735058 AAGAC
1 AAGAC
93735063 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:93736747 original size:20 final size:21
Alignment explanation
Indices: 93736722--93736761 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
93736712 CACTTCAAGC
93736722 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
93736742 AGGGCAACACGCCTGTGTGG
1 AGGGCAACACGCCCGTGTGG
93736762 CCCTGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:93738774 original size:40 final size:40
Alignment explanation
Indices: 93738729--93739633 Score: 1542
Period size: 40 Copynumber: 22.6 Consensus size: 40
93738719 CAAGCTCAAT
* * * * *
93738729 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
93738769 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
93738809 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
93738849 CGCCATCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
93738889 CGCCATCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
93738929 TGCCTTCGGGTCTTATCCTGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
93738969 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
93739009 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
93739049 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
93739089 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
93739129 TGCCTTCGGGTCTTATCCCGGATATATCAATTCACACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
93739169 TGCCTTCAGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
93739209 TGCCTTCGGGTCTTATCCCGAATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
93739249 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
93739289 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
93739329 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
93739369 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
93739409 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
93739449 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
93739489 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
93739529 TGCCTTCGGGTCTTAACCCGGATATATCAATTCACACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
93739569 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
93739609 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
93739634 CATTCAAATG
Statistics
Matches: 830, Mismatches: 33, Indels: 4
0.96 0.04 0.00
Matches are distributed among these distances:
39 2 0.00
40 827 1.00
41 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:93744729 original size:23 final size:24
Alignment explanation
Indices: 93744685--93744729 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
93744675 TAGCCCTTTC
* * *
93744685 GAGCTTTCCATATATGGTTCTTGT
1 GAGCTTCCCATATATAGCTCTTGT
93744709 GAGCTTCCCAT-TATAGCTCTT
1 GAGCTTCCCATATATAGCTCTT
93744730 CGGAGCGTCC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 8 0.44
24 10 0.56
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.42
Consensus pattern (24 bp):
GAGCTTCCCATATATAGCTCTTGT
Found at i:93746209 original size:55 final size:55
Alignment explanation
Indices: 93746104--93746355 Score: 258
Period size: 55 Copynumber: 4.7 Consensus size: 55
93746094 AGGGTTTAAA
* *
93746104 GATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTT-TCTAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTCTATAAGGCAAG
* * *
93746159 GATATCATGTAAGACCATGTCAAGACATGGC-ATCGGTAAGTTACTATAAGGCAAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT-CTATAAGGC-AAG
* * *
93746215 G-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAGTTC-ATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTCTATAAGGCAAG
* *
93746267 GATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAAGTT-TA-AA---AAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTCTATAAGGCAAG
** * * *
93746316 GATACCACATAAGACCACGACAAGTCATGGCAA-TGGTAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
93746356 GTACTCGTGT
Statistics
Matches: 169, Mismatches: 22, Indels: 18
0.81 0.11 0.09
Matches are distributed among these distances:
49 37 0.22
52 6 0.04
53 44 0.26
54 9 0.05
55 69 0.41
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.21
Consensus pattern (55 bp):
GATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTCTATAAGGCAAG
Found at i:93746305 original size:108 final size:110
Alignment explanation
Indices: 93746108--93746308 Score: 329
Period size: 108 Copynumber: 1.8 Consensus size: 110
93746098 TTTAAAGATA
*
93746108 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
93746173 CCATGTCAAGACATGGCATCGGTAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCATCGGTAAGTTACTATAAGGCAAAGGTC
*
93746218 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
*
93746280 ACCATGTCGAGACATGGCAAT-GGTAAGTT
65 ACCATGTCAAGACATGGC-ATCGGTAAGTT
93746309 TAAAAAGGAT
Statistics
Matches: 86, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
107 3 0.03
108 47 0.55
109 9 0.10
110 27 0.31
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCATCGGTAAGTTACTATAAGGCAAAGGTC
Found at i:93753030 original size:28 final size:28
Alignment explanation
Indices: 93752954--93753022 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
93752944 ATCCATACTT
* * *
93752954 ATTCATTTGGCCCCTTCAGGCCAAATCTC
1 ATTCATATGG-CCCATCAGGCCAAATCAC
*
93752983 ATTCATATGGCCCATCAGGCCCAATCAC
1 ATTCATATGGCCCATCAGGCCAAATCAC
*
93753011 TTTCATATGGCC
1 ATTCATATGGCC
93753023 TGTCAGGCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
28 26 0.74
29 9 0.26
ACGTcount: A:0.23, C:0.33, G:0.14, T:0.29
Consensus pattern (28 bp):
ATTCATATGGCCCATCAGGCCAAATCAC
Found at i:93753542 original size:21 final size:21
Alignment explanation
Indices: 93753518--93753557 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
93753508 ACTAAACACC
*
93753518 AAGTGACTCGTAAATCATCTT
1 AAGTCACTCGTAAATCATCTT
*
93753539 AAGTCACTCTTAAATCATC
1 AAGTCACTCGTAAATCATC
93753558 CATGACCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.33
Consensus pattern (21 bp):
AAGTCACTCGTAAATCATCTT
Found at i:93758280 original size:79 final size:81
Alignment explanation
Indices: 93758144--93758328 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
93758134 TTGAATGATG
*
93758144 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
93758208 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
93758223 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
93758285 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
93758303 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
93758329 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:93758342 original size:40 final size:41
Alignment explanation
Indices: 93758144--93758328 Score: 231
Period size: 40 Copynumber: 4.6 Consensus size: 41
93758134 TTGAATGATG
* * *
93758144 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
93758184 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-AT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
93758224 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
93758263 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
93758304 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
93758329 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 35 0.28
40 82 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:93758350 original size:79 final size:79
Alignment explanation
Indices: 93758145--93758361 Score: 192
Period size: 79 Copynumber: 2.7 Consensus size: 79
93758135 TGAATGATGT
** * * * **
93758145 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
93758208 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
93758225 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
93758290 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * * *
93758304 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATAT-CTGGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
93758362 TACGTGATTT
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 72 0.63
80 40 0.35
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:93769148 original size:13 final size:13
Alignment explanation
Indices: 93769110--93769155 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
93769100 CATAGGTGAA
93769110 ATGTGTTTATTTTG
1 ATGT-TTTATTTTG
93769124 ATGTTTTA---TG
1 ATGTTTTATTTTG
*
93769134 ATATTTTATTTTG
1 ATGTTTTATTTTG
93769147 ATGTTTTAT
1 ATGTTTTAT
93769156 GGTAGAAGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
10 9 0.33
13 14 0.52
14 4 0.15
ACGTcount: A:0.20, C:0.00, G:0.15, T:0.65
Consensus pattern (13 bp):
ATGTTTTATTTTG
Found at i:93769817 original size:55 final size:55
Alignment explanation
Indices: 93769756--93770012 Score: 207
Period size: 55 Copynumber: 4.8 Consensus size: 55
93769746 ATTAGGGTTT
* *
93769756 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
* * * * *
93769811 AAGGATATCATGTAAGACCATATCAAGACATGAC-ATTGATAA-GTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGTT--TCTAAGGC
* * * * * *
93769866 AAAGG-TCCCATGTAAGACTATGGCAAGGCATGGC-ATTGGTGA-G-TTCATAAAGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGTTTC-TAAGGC
* *
93769919 AAGGATACCATGTAAGACCATGTCGAGACATGG-AAATGGT-AGGTTTC-AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
* ** * *
93769968 AAGGATACCACGTAAGACCATGAAAAGTCATGG-AAATGGTAAGGT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGT
93770013 ACCCGTGTAT
Statistics
Matches: 164, Mismatches: 29, Indels: 23
0.76 0.13 0.11
Matches are distributed among these distances:
49 35 0.21
50 4 0.02
52 8 0.05
53 37 0.23
54 11 0.07
55 65 0.40
56 4 0.02
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
Found at i:93770223 original size:16 final size:16
Alignment explanation
Indices: 93770202--93770232 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
93770192 ATAAATTTGA
93770202 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
93770218 TTAAGTAAGTAAGTA
1 TTAAGTAAGTAAGTA
93770233 AGTGAAGGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:93772153 original size:22 final size:23
Alignment explanation
Indices: 93772128--93772170 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
93772118 ATTCCATATC
*
93772128 ATAAACA-ACCAAATTCATGCTT
1 ATAAACATACCAAAATCATGCTT
*
93772150 ATAATCATACCAAAATCATGC
1 ATAAACATACCAAAATCATGC
93772171 CAAAACATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.47, C:0.23, G:0.05, T:0.26
Consensus pattern (23 bp):
ATAAACATACCAAAATCATGCTT
Found at i:93780449 original size:40 final size:40
Alignment explanation
Indices: 93780385--93780460 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
93780375 CTATCTCGAT
93780385 TTTGCACACTTAGTGCCTCATATAGCC-AGAGCTATTCCAA
1 TTTGCACACTTAGTGCCTCATATAGCCGA-AGCTATTCCAA
93780425 TTTGCACACTTAGTG-CT-ATTTATAGCCGAAGCTATT
1 TTTGCACACTTAGTGCCTCA--TATAGCCGAAGCTATT
93780461 TTGAATCGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
38 1 0.03
39 2 0.06
40 29 0.88
41 1 0.03
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (40 bp):
TTTGCACACTTAGTGCCTCATATAGCCGAAGCTATTCCAA
Found at i:93783693 original size:39 final size:39
Alignment explanation
Indices: 93783496--93783693 Score: 279
Period size: 39 Copynumber: 5.1 Consensus size: 39
93783486 GGATTCCATT
* *
93783496 CCAGCACGTAGCCTGCGGACTTCAAGTCCGGATATATTT
1 CCAGCACATAGCCTGCGGACTTCAAGTCCGGATATATTC
* *
93783535 CCAGAACATAGCCTGCGGACTTCAAGTCCGGATATATTT
1 CCAGCACATAGCCTGCGGACTTCAAGTCCGGATATATTC
* *
93783574 CCAGCACATAGCTTGTGGACTTCAAGTCCGGATATATTC
1 CCAGCACATAGCCTGCGGACTTCAAGTCCGGATATATTC
* * * *
93783613 CCAGCATATAGCCTGCGGACCTCATGTCCGGATATACTC
1 CCAGCACATAGCCTGCGGACTTCAAGTCCGGATATATTC
* * *
93783652 CCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTC
1 CCAGCACATAGCCTGCGGACTTCAAGTCCGGATATATTC
93783691 CCA
1 CCA
93783694 ATATCATGCA
Statistics
Matches: 146, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 146 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (39 bp):
CCAGCACATAGCCTGCGGACTTCAAGTCCGGATATATTC
Found at i:93791450 original size:39 final size:39
Alignment explanation
Indices: 93791396--93791590 Score: 239
Period size: 39 Copynumber: 5.0 Consensus size: 39
93791386 CTGGATTCCC
*
93791396 TTCCAGCACGTAGCCTGCGGACTTCAAGTCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
* * * *
93791435 TTCCAGAACATAGCCTACGGACTTTAAGTCCGAATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
*
93791474 TTCTAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
* * * * *
93791513 TCCCAGCATATAGCCTGCTGACCTCATGTCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
* * * * *
93791552 TCCCAGCA-TTATCCTGCGGACCTCATGTCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
93791590 T
1 T
93791591 CCCAATATTG
Statistics
Matches: 137, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
38 28 0.20
39 109 0.80
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
Found at i:93811444 original size:14 final size:13
Alignment explanation
Indices: 93811421--93811452 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
93811411 GGAATATCAA
93811421 AACAATAATTAAG
1 AACAATAATTAAG
93811434 AACACATAATTAAG
1 AACA-ATAATTAAG
93811448 AACAA
1 AACAA
93811453 GTCAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:93817059 original size:56 final size:56
Alignment explanation
Indices: 93816969--93817088 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
93816959 ACAAGGGATG
93816969 ATGGGCAAAACATGTCATGAAACATGTTGCGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGCGTTAATGGAAAAATAAAATAAGAAGC
* *
93817025 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGCGTTAATGGAAAAATAAAATAAGAAGC
93817081 ATGGGCAA
1 ATGGGCAA
93817089 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGCGTTAATGGAAAAATAAAATAAGAAGC
Found at i:93818327 original size:39 final size:40
Alignment explanation
Indices: 93818219--93818403 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
93818209 TCGAATGATG
* * *
93818219 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * * *
93818258 ATCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGATCCTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
93818299 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
93818338 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
93818377 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
93818404 AATGAGTAGC
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 33 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:93818425 original size:79 final size:79
Alignment explanation
Indices: 93818275--93818436 Score: 177
Period size: 79 Copynumber: 2.1 Consensus size: 79
93818265 CTAAGATCCA
* * **
93818275 AAGGCATTTGTGCGAGATCCTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
*
93818340 CGGGTTAAGTCCCG
66 CGGGTTAAATCCCG
* * * * *
93818354 AAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAG-TAGCTAT
1 AAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAA
*
93818417 ATCC-GGTTAAATTCCG
63 ATCCGGGTTAAATCCCG
93818433 AAGG
1 AAGG
93818437 TACGTGATTT
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 44 0.64
80 23 0.33
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
CGGGTTAAATCCCG
Found at i:93823995 original size:18 final size:18
Alignment explanation
Indices: 93823974--93824010 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
93823964 ATTCGTGGTG
*
93823974 TTTTGAAAACATATATCC
1 TTTTGAAAAAATATATCC
*
93823992 TTTTGAAAAAATGTATCC
1 TTTTGAAAAAATATATCC
93824010 T
1 T
93824011 AAAGCTAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.41
Consensus pattern (18 bp):
TTTTGAAAAAATATATCC
Found at i:93824350 original size:34 final size:34
Alignment explanation
Indices: 93824302--93824386 Score: 127
Period size: 34 Copynumber: 2.5 Consensus size: 34
93824292 CCCATTTCAG
93824302 TTACAAT-ACAGTATCAGTGTGAGCCTTAGCCCA
1 TTACAATAACAGTATCAGTGTGAGCCTTAGCCCA
* * *
93824335 TTACAATAACAGTATCAGTGTGGGCTTTATCCCA
1 TTACAATAACAGTATCAGTGTGAGCCTTAGCCCA
*
93824369 TTACAATAACTGTATCAG
1 TTACAATAACAGTATCAG
93824387 AAAATGCAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 7 0.15
34 40 0.85
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (34 bp):
TTACAATAACAGTATCAGTGTGAGCCTTAGCCCA
Found at i:93827461 original size:27 final size:27
Alignment explanation
Indices: 93827431--93827492 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
93827421 GTAGTCGGTC
* *
93827431 ATTTTACTCTACAAGGGTATTTCAATA
1 ATTTTACACGACAAGGGTATTTCAATA
*
93827458 ATTTTACACGACAAGGGTATTTCGATA
1 ATTTTACACGACAAGGGTATTTCAATA
93827485 ATTTTACA
1 ATTTTACA
93827493 AATCAGAGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.39
Consensus pattern (27 bp):
ATTTTACACGACAAGGGTATTTCAATA
Found at i:93827507 original size:27 final size:26
Alignment explanation
Indices: 93827446--93827895 Score: 358
Period size: 27 Copynumber: 16.8 Consensus size: 26
93827436 ACTCTACAAG
* * *
93827446 GGTATTTCAATAATTTTACACGA-CAA
1 GGTATTTCGATAATTTTACA-AATCGA
93827472 GGGTATTTCGATAATTTTACAAATCAGA
1 -GGTATTTCGATAATTTTACAAATC-GA
* *
93827500 GGTGTTTCGGTAATTTTACAAATCGA
1 GGTATTTCGATAATTTTACAAATCGA
* *
93827526 GGGTATTTTGATAATTTTCCAAATCGA
1 -GGTATTTCGATAATTTTACAAATCGA
* *
93827553 GGGTATTT-TAGTAATTTTACAAATTGA
1 -GGTATTTCGA-TAATTTTACAAATCGA
*
93827580 GGGTGTTTC-AGTAATTTTACAAATCGA
1 -GGTATTTCGA-TAATTTTACAAATCGA
* * * *
93827607 GGGTGTTTTGATAATTTTATAAATCGG
1 -GGTATTTCGATAATTTTACAAATCGA
* *
93827634 GGTACTTCGATAATTTTACAAA-CAAGG
1 GGTATTTCGATAATTTTACAAATC--GA
* * *
93827661 GGTATTTTGATGATTTTACAAATAGAA
1 GGTATTTCGATAATTTTACAAATCG-A
* *
93827688 GGTCTTTCGATAATTTTACAAAGCGA
1 GGTATTTCGATAATTTTACAAATCGA
* * *
93827714 GGGTGTTTCGGTAATTTTACAAAT-AA
1 -GGTATTTCGATAATTTTACAAATCGA
* * * *
93827740 GGGTGTTTCGATAATTTCACAAATTAGG
1 -GGTATTTCGATAATTTTACAAA-TCGA
93827768 GGTATTTCGATAATTTTACAAATTACG-
1 GGTATTTCGATAATTTTACAAA-T-CGA
* *
93827795 GGTAATTC-AGTAATTTTAC-AATCAA
1 GGTATTTCGA-TAATTTTACAAATCGA
* *
93827820 GGGTATTTCGGTAATTTTACAAATCGG
1 -GGTATTTCGATAATTTTACAAATCGA
*
93827847 GAGTATTTCGATAATTTTACAAATCGG
1 G-GTATTTCGATAATTTTACAAATCGA
*
93827874 GGTACTTCGATAATTTTACAAA
1 GGTATTTCGATAATTTTACAAA
93827896 CAAGGGGTAT
Statistics
Matches: 353, Mismatches: 50, Indels: 41
0.80 0.11 0.09
Matches are distributed among these distances:
24 1 0.00
25 2 0.01
26 86 0.24
27 261 0.74
28 3 0.01
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.38
Consensus pattern (26 bp):
GGTATTTCGATAATTTTACAAATCGA
Found at i:93827700 original size:80 final size:78
Alignment explanation
Indices: 93827445--93827916 Score: 425
Period size: 80 Copynumber: 5.9 Consensus size: 78
93827435 TACTCTACAA
* * * * *
93827445 GGGTATTTCAATAATTTTACACGA-CAAGGGTATTTCGATAATTTTACAAATC-AGAGGTGTTTC
1 GGGTATTTCGATAATTTTACA-AATC-GGGGTACTTCGATAATTTTACAAA-CAAG-GGTATTTC
* *
93827508 GGTAATTTTACAAATCG
62 GATAATTTTACAAATAG
* * ** ** *
93827525 AGGGTATTTTGATAATTTTCCAAATCGAGGGTA-TTTTAGTAATTTTACAAATTGAGGGTGTTTC
1 -GGGTATTTCGATAATTTTACAAATCG-GGGTACTTCGA-TAATTTTACAAA-CAAGGGTATTTC
*
93827589 -AGTAATTTTACAAATCG
62 GA-TAATTTTACAAATAG
* * * *
93827606 AGGGTGTTTTGATAATTTTATAAATCGGGGTACTTCGATAATTTTACAAACAAGGGGTATTTTGA
1 -GGGTATTTCGATAATTTTACAAATCGGGGTACTTCGATAATTTTACAAACAA-GGGTATTTCGA
*
93827671 TGATTTTACAAATAG
64 TAATTTTACAAATAG
* * * ** * * *
93827686 AAGGTCTTTCGATAATTTTACAAAGCGAGGGTGTTTCGGTAATTTTACAAATAAGGGTGTTTCGA
1 -GGGTATTTCGATAATTTTACAAATCG-GGGTACTTCGATAATTTTACAAACAAGGGTATTTCGA
*
93827751 TAATTTCACAAATTAG
64 TAATTTTACAAA-TAG
* *
93827767 GGGTATTTCGATAATTTTACAAATTAC-GGGTAATTC-AGTAATTTTACAATCAAGGGTATTTCG
1 GGGTATTTCGATAATTTTACAAA-T-CGGGGTACTTCGA-TAATTTTACAAACAAGGGTATTTCG
* *
93827830 GTAATTTTACAAATCG
63 ATAATTTTACAAATAG
*
93827846 GGAGTATTTCGATAATTTTACAAATCGGGGTACTTCGATAATTTTACAAACAAGGGGTATTTCGG
1 GG-GTATTTCGATAATTTTACAAATCGGGGTACTTCGATAATTTTACAAACAA-GGGTATTTCGA
93827911 TAATTT
64 TAATTT
93827917 CTCTTCACTA
Statistics
Matches: 327, Mismatches: 47, Indels: 35
0.80 0.11 0.09
Matches are distributed among these distances:
78 1 0.00
79 28 0.09
80 182 0.56
81 113 0.35
82 3 0.01
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (78 bp):
GGGTATTTCGATAATTTTACAAATCGGGGTACTTCGATAATTTTACAAACAAGGGTATTTCGATA
ATTTTACAAATAG
Found at i:93827702 original size:107 final size:106
Alignment explanation
Indices: 93827445--93827916 Score: 489
Period size: 107 Copynumber: 4.4 Consensus size: 106
93827435 TACTCTACAA
*
93827445 GGGTATTTCAATAATTTTACACGACA-AG-GGTATTTC-GATAATTTTACAAATC-AGAGGTGTT
1 GGGTATTTCGATAATTTTACA--A-ATAGAGGTATTTCAG-TAATTTTACAAATCGAG-GGTGTT
* *
93827506 TCGGTAATTTTACAAATCGAGGGTATTTTGATAATTTTCCAAATC-G
61 TCGGTAATTTTACAAATCG-GGGTATTTCGATAATTTTACAAATCAG
* * * *
93827552 AGGGTATTT-TAGTAATTTTACAAATTGAGGGTGTTTCAGTAATTTTACAAATCGAGGGTGTTTT
1 -GGGTATTTCGA-TAATTTTACAAATAGA-GGTATTTCAGTAATTTTACAAATCGAGGGTGTTTC
* * *
93827616 GATAATTTTATAAATCGGGGTACTTCGATAATTTTACAAA-CAAG
63 GGTAATTTTACAAATCGGGGTATTTCGATAATTTTACAAATC-AG
* * * *
93827660 GGGTATTTTGATGATTTTACAAATAGAAGGTCTTTC-GATAATTTTACAAAGCGAGGGTGTTTCG
1 GGGTATTTCGATAATTTTACAAATAG-AGGTATTTCAG-TAATTTTACAAATCGAGGGTGTTTCG
** * * *
93827724 GTAATTTTACAAATAAGGGTGTTTCGATAATTTCACAAATTAG
64 GTAATTTTACAAATCGGGGTATTTCGATAATTTTACAAATCAG
* * *
93827767 GGGTATTTCGATAATTTTACAAATTACG-GGTAATTCAGTAATTTTAC-AATCAAGGGTATTTCG
1 GGGTATTTCGATAATTTTACAAA-TA-GAGGTATTTCAGTAATTTTACAAATCGAGGGTGTTTCG
93827830 GTAATTTTACAAATCGGGAGTATTTCGATAATTTTACAAATC-G
64 GTAATTTTACAAATCGGG-GTATTTCGATAATTTTACAAATCAG
* * * *
93827873 GGGTACTTCGATAATTTTACAAACAAGGGGTATTTCGGTAATTT
1 GGGTATTTCGATAATTTTACAAA-TAGAGGTATTTCAGTAATTT
93827917 CTCTTCACTA
Statistics
Matches: 307, Mismatches: 40, Indels: 36
0.80 0.10 0.09
Matches are distributed among these distances:
105 2 0.01
106 71 0.23
107 163 0.53
108 67 0.22
109 4 0.01
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (106 bp):
GGGTATTTCGATAATTTTACAAATAGAGGTATTTCAGTAATTTTACAAATCGAGGGTGTTTCGGT
AATTTTACAAATCGGGGTATTTCGATAATTTTACAAATCAG
Found at i:93827892 original size:53 final size:52
Alignment explanation
Indices: 93827445--93827916 Score: 402
Period size: 54 Copynumber: 8.8 Consensus size: 52
93827435 TACTCTACAA
* * *
93827445 GGGTATTTCAATAATTTTACACGA-CAAGGGTATTTCGATAATTTTACAAATCAG
1 GGGTATTTCGATAATTTTACA-AATC-GGGGTATTTCGATAATTTTACAAATC-G
* * * * *
93827499 AGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTTGATAATTTTCCAAATCG
1 GGGTATTTCGATAATTTTACAAATCG-GGGTATTTCGATAATTTTACAAATCG
* * *
93827552 AGGGTATTT-TAGTAATTTTACAAATTGAGGGTGTTTC-AGTAATTTTACAAATCG
1 -GGGTATTTCGA-TAATTTTACAAATCG-GGGTATTTCGA-TAATTTTACAAATCG
* * * *
93827606 AGGGTGTTTTGATAATTTTATAAATCGGGGTACTTCGATAATTTTACAAA-CAAG
1 -GGGTATTTCGATAATTTTACAAATCGGGGTATTTCGATAATTTTACAAATC--G
* * * * * *
93827660 GGGTATTTTGATGATTTTACAAATAGAAGGTCTTTCGATAATTTTACAAAGCG
1 GGGTATTTCGATAATTTTACAAATCG-GGGTATTTCGATAATTTTACAAATCG
* * ** * * *
93827713 AGGGTGTTTCGGTAATTTTACAAATAAGGGTGTTTCGATAATTTCACAAATTAG
1 -GGGTATTTCGATAATTTTACAAATCGGGGTATTTCGATAATTTTACAAA-TCG
* *
93827767 GGGTATTTCGATAATTTTACAAATTAC-GGGTAATTC-AGTAATTTTAC-AATCAA
1 GGGTATTTCGATAATTTTACAAA-T-CGGGGTATTTCGA-TAATTTTACAAATC-G
*
93827820 GGGTATTTCGGTAATTTTACAAATCGGGAGTATTTCGATAATTTTACAAATCG
1 GGGTATTTCGATAATTTTACAAATCGGG-GTATTTCGATAATTTTACAAATCG
* *
93827873 GGGTACTTCGATAATTTTACAAA-CAAGGGGTATTTCGGTAATTT
1 GGGTATTTCGATAATTTTACAAATC--GGGGTATTTCGATAATTT
93827917 CTCTTCACTA
Statistics
Matches: 342, Mismatches: 53, Indels: 47
0.77 0.12 0.11
Matches are distributed among these distances:
51 1 0.00
52 6 0.02
53 161 0.47
54 172 0.50
55 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (52 bp):
GGGTATTTCGATAATTTTACAAATCGGGGTATTTCGATAATTTTACAAATCG
Found at i:93828023 original size:30 final size:30
Alignment explanation
Indices: 93827987--93828046 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
93827977 GAACAGATAC
*
93827987 TATGCACCAGGTAGGATTCCAGAGAAGAGG
1 TATGCACCAGGTAGGATTCCAAAGAAGAGG
93828017 TATGCACCAGGTAGGATTCCAAAGAAGAGG
1 TATGCACCAGGTAGGATTCCAAAGAAGAGG
93828047 AGGTGAGTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.35, C:0.17, G:0.32, T:0.17
Consensus pattern (30 bp):
TATGCACCAGGTAGGATTCCAAAGAAGAGG
Found at i:93828311 original size:28 final size:28
Alignment explanation
Indices: 93828267--93828358 Score: 76
Period size: 28 Copynumber: 3.3 Consensus size: 28
93828257 TGGCCCCTTT
* * *
93828267 AGGCCCAATCTCGTTCACAAGGCCCGTC
1 AGGCCCAATCACATTCACAAGGCCCATC
* *
93828295 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACAAGGCCCATC
* * * * **
93828323 AAGCCCATTCAGATTCATATCGCCCATC
1 AGGCCCAATCACATTCACAAGGCCCATC
*
93828351 ACGCCCAA
1 AGGCCCAA
93828359 CTACTTCCCA
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.27, C:0.38, G:0.15, T:0.20
Consensus pattern (28 bp):
AGGCCCAATCACATTCACAAGGCCCATC
Found at i:93839038 original size:27 final size:26
Alignment explanation
Indices: 93839000--93839087 Score: 86
Period size: 27 Copynumber: 3.3 Consensus size: 26
93838990 AAAACAGTCC
* * *
93839000 TTTTACCCTACAGCGGTATGTCGGTCA
1 TTTTACACTACAG-GGTATGTCGATAA
* *
93839027 TTTTACACTACAAGGGTATTTTGATAA
1 TTTTACACTAC-AGGGTATGTCGATAA
* *
93839054 TTTTACACTACAAGGGTATTTCAATAA
1 TTTTACACTAC-AGGGTATGTCGATAA
93839081 TTTTACA
1 TTTTACA
93839088 AATTAGGGTT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
27 51 0.96
28 2 0.04
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.39
Consensus pattern (26 bp):
TTTTACACTACAGGGTATGTCGATAA
Found at i:93839102 original size:27 final size:26
Alignment explanation
Indices: 93839039--93839497 Score: 316
Period size: 27 Copynumber: 17.2 Consensus size: 26
93839029 TTACACTACA
* * * **
93839039 AGGGTATTTTGATAATTTTACACTACA
1 AGGGTGTTTCGATAATTTTACA-AATT
* *
93839066 AGGGTATTTCAATAATTTTACAAATT
1 AGGGTGTTTCGATAATTTTACAAATT
*
93839092 AGGGTTGTTTCGATAATTTTACAAATCG
1 AGGG-TGTTTCGATAATTTTACAAAT-T
* * * *
93839120 AGGGTATTCCGATAATTTGACAAATCG
1 AGGGTGTTTCGATAATTTTACAAAT-T
* *
93839147 AGGGTATTTC-ACTAACTTTACAAATT
1 AGGGTGTTTCGA-TAATTTTACAAATT
* * * *
93839173 GAGGGTGTTTTGGTAATTTTATAAATCG
1 -AGGGTGTTTCGATAATTTTACAAAT-T
* *
93839201 AGTGTGTTTCGATAATTTTACAAATCG
1 AGGGTGTTTCGATAATTTTACAAAT-T
* * *
93839228 AGGGTGTTTCAATAATTTCA-AAAAT
1 AGGGTGTTTCGATAATTTTACAAATT
* * *
93839253 CGGGTGTTTTGATAATTTTACAAATCG
1 AGGGTGTTTCGATAATTTTACAAAT-T
* *
93839280 AGGGTGTTTTGATAATTTTACAAATCG
1 AGGGTGTTTCGATAATTTTACAAAT-T
*
93839307 AGGGTGTTTCGGTAATTTTACAAATT
1 AGGGTGTTTCGATAATTTTACAAATT
* *
93839333 AAGGGTGTTTCAATAATTTCACAAATT
1 -AGGGTGTTTCGATAATTTTACAAATT
*
93839360 AAGGGTATTTC-AGTAATTTTACAAATT
1 -AGGGTGTTTCGA-TAATTTTACAAATT
** * *
93839387 AAGGGTAATTC-AGTAATTTCAC-AATCG
1 -AGGGTGTTTCGA-TAATTTTACAAAT-T
* *
93839414 AGGGTATTTCGATAATTTTACAAATC
1 AGGGTGTTTCGATAATTTTACAAATT
* * *
93839440 GGAGGTATTTCGATAATTTTACAAATCG
1 AG-GGTGTTTCGATAATTTTACAAAT-T
** * *
93839468 AGGGTACTTCGGTAATTTTACAAACT
1 AGGGTGTTTCGATAATTTTACAAATT
93839494 AGGG
1 AGGG
93839498 GTAGTTTGGT
Statistics
Matches: 359, Mismatches: 58, Indels: 31
0.80 0.13 0.07
Matches are distributed among these distances:
25 16 0.04
26 38 0.11
27 300 0.84
28 5 0.01
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.38
Consensus pattern (26 bp):
AGGGTGTTTCGATAATTTTACAAATT
Found at i:93839107 original size:54 final size:53
Alignment explanation
Indices: 93839039--93839491 Score: 360
Period size: 54 Copynumber: 8.5 Consensus size: 53
93839029 TTACACTACA
* * * *
93839039 AGGGTATTTTGATAATTTTAC-ACTACAAGGGTATTTCAATAATTTTACAAATT
1 AGGGTGTTTCGATAATTTTACAAAT-CGAGGGTATTTCAATAATTTTACAAATT
* * * *
93839092 AGGGTTGTTTCGATAATTTTACAAATCGAGGGTATTCCGATAATTTGACAAATCG
1 AGGG-TGTTTCGATAATTTTACAAATCGAGGGTATTTCAATAATTTTACAAAT-T
* * * * *** * *
93839147 AGGGTATTTC-ACTAACTTTACAAATTGAGGGTGTTTTGGTAATTTTATAAATCG
1 AGGGTGTTTCGA-TAATTTTACAAATCGAGGGTATTTCAATAATTTTACAAAT-T
* * * *
93839201 AGTGTGTTTCGATAATTTTACAAATCGAGGGTGTTTCAATAATTTCA-AAAAT
1 AGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTCAATAATTTTACAAATT
* * * ** *
93839253 CGGGTGTTTTGATAATTTTACAAATCGAGGGTGTTTTGATAATTTTACAAATCG
1 AGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTCAATAATTTTACAAAT-T
* ** * *
93839307 AGGGTGTTTCGGTAATTTTACAAATTAAGGGTGTTTCAATAATTTCACAAATT
1 AGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTCAATAATTTTACAAATT
* ** * * * *
93839360 AAGGGTATTTC-AGTAATTTTACAAATTAAGGGTAATTCAGTAATTTCAC-AATCG
1 -AGGGTGTTTCGA-TAATTTTACAAATCGAGGGTATTTCAATAATTTTACAAAT-T
* * *
93839414 AGGGTATTTCGATAATTTTACAAATCG-GAGGTATTTCGATAATTTTACAAATCG
1 AGGGTGTTTCGATAATTTTACAAATCGAG-GGTATTTCAATAATTTTACAAAT-T
** *
93839468 AGGGTACTTCGGTAATTTTACAAA
1 AGGGTGTTTCGATAATTTTACAAA
93839492 CTAGGGGTAG
Statistics
Matches: 329, Mismatches: 58, Indels: 25
0.80 0.14 0.06
Matches are distributed among these distances:
52 42 0.13
53 52 0.16
54 228 0.69
55 7 0.02
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (53 bp):
AGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTCAATAATTTTACAAATT
Found at i:93839124 original size:81 final size:80
Alignment explanation
Indices: 93839039--93839497 Score: 496
Period size: 81 Copynumber: 5.7 Consensus size: 80
93839029 TTACACTACA
* * * *
93839039 AGGGTATTTTGATAATTTTAC-ACTACAAGGGTATTTCAATAATTTTACAAATTAGGGTTGTTTC
1 AGGGTATTTCGATAATTTTACAAAT-CGAGGGTATTTCAGTAATTTTACAAATTAGGG-TGTTTC
93839103 GATAATTTTACAAATCG
64 GATAATTTTACAAATCG
* * * * *
93839120 AGGGTATTCCGATAATTTGACAAATCGAGGGTATTTCACTAACTTTACAAATTGAGGGTGTTTTG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATT-AGGGTGTTTCG
* *
93839185 GTAATTTTATAAATCG
65 ATAATTTTACAAATCG
* * * * * * * *
93839201 AGTGTGTTTCGATAATTTTACAAATCGAGGGTGTTTCAATAATTTCA-AAAATCGGGTGTTTTGA
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTAGGGTGTTTCGA
93839265 TAATTTTACAAATCG
66 TAATTTTACAAATCG
* * * * *
93839280 AGGGTGTTTTGATAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATTAAGGGTGTTTCA
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATT-AGGGTGTTTCG
* **
93839345 ATAATTTCACAAATTA
65 ATAATTTTACAAATCG
** * * * *
93839361 AGGGTATTTC-AGTAATTTTACAAATTAAGGGTAATTCAGTAATTTCAC-AATCGAGGGTATTTC
1 AGGGTATTTCGA-TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAAT-TAGGGTGTTTC
93839424 GATAATTTTACAAATCG
64 GATAATTTTACAAATCG
* * *
93839441 -GAGGTATTTCGATAATTTTACAAATCGAGGGTACTTCGGTAATTTTACAAACTAGGG
1 AG-GGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTAGGG
93839498 GTAGTTTGGT
Statistics
Matches: 314, Mismatches: 55, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
79 67 0.21
80 77 0.25
81 164 0.52
82 6 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.38
Consensus pattern (80 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTAGGGTGTTTCGA
TAATTTTACAAATCG
Found at i:93839898 original size:28 final size:28
Alignment explanation
Indices: 93839863--93839982 Score: 159
Period size: 28 Copynumber: 4.3 Consensus size: 28
93839853 TGGCCCCTTT
* * *
93839863 AGGCCCAATCTCGTTCACATGGCCCATT
1 AGGCCCAATCTCATTCATATGGCCCATC
*
93839891 AGGCCCAATCGCATTCATATGGCCCATC
1 AGGCCCAATCTCATTCATATGGCCCATC
* ** *
93839919 AGGCCCATTCAGATTCATATGGCCTATC
1 AGGCCCAATCTCATTCATATGGCCCATC
*
93839947 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCTCATTCATATGGCCCATC
93839975 AGGCCCAA
1 AGGCCCAA
93839983 CTACGTCCCA
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 81 1.00
ACGTcount: A:0.26, C:0.34, G:0.17, T:0.23
Consensus pattern (28 bp):
AGGCCCAATCTCATTCATATGGCCCATC
Found at i:93839941 original size:56 final size:56
Alignment explanation
Indices: 93839876--93839981 Score: 176
Period size: 56 Copynumber: 1.9 Consensus size: 56
93839866 CCCAATCTCG
* *
93839876 TTCACATGGCCCATTAGGCCCAATCGCATTCATATGGCCCATCAGGCCCATTCAGA
1 TTCACATGGCCCATCAGGCCCAATCACATTCATATGGCCCATCAGGCCCATTCAGA
* *
93839932 TTCATATGGCCTATCAGGCCCAATCACATTCATATGGCCCATCAGGCCCA
1 TTCACATGGCCCATCAGGCCCAATCACATTCATATGGCCCATCAGGCCCA
93839982 ACTACGTCCC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 46 1.00
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.24
Consensus pattern (56 bp):
TTCACATGGCCCATCAGGCCCAATCACATTCATATGGCCCATCAGGCCCATTCAGA
Found at i:93842866 original size:27 final size:27
Alignment explanation
Indices: 93842826--93843272 Score: 448
Period size: 27 Copynumber: 16.6 Consensus size: 27
93842816 ACACTACAAT
* * **
93842826 GGTATGTCGATAATTTTACAAATTAAG
1 GGTATTTCGGTAATTTTACAAATCGAG
*
93842853 GGTGTTTCGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
93842880 GGTATTTCGATAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
93842907 GGTGTTTCAGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
93842934 GGTGTTTCGGTAATTTTAAAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * * *
93842961 GGTATTTTGGTAATTTCATAAATCAAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * * *
93842988 GGTATTTTGGTAATTTCACGAATTGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* ***
93843015 GGTGTTTTAATAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
93843042 GGTGTTTTGGCAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * * *
93843069 GGTGTTTCGATAATTTTAAAAATCGAA
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
93843096 GGTGTTTCGATAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
** *
93843123 GGTATTTTAGTAATTTCAC-AATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
93843149 GGTATTTCAGTAATTTTACAAATTGGG
1 GGTATTTCGGTAATTTTACAAATCGAG
***
93843176 GGTATTTCGGTAATTTTACAAATTTTG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
93843203 GGTATTTCGATAATTTTAAAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
93843230 GGTACTTCGATAATTTTACAAAT-TAGG
1 GGTATTTCGGTAATTTTACAAATCGA-G
*
93843257 GGTATTTTGGTAATTT
1 GGTATTTCGGTAATTT
93843273 CTCTTTATTA
Statistics
Matches: 356, Mismatches: 62, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
26 25 0.07
27 331 0.93
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAATCGAG
Done.