Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 277 of 373
Found at i:93843630 original size:28 final size:28
Alignment explanation
Indices: 93843593--93843656 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
93843583 TGGCCCCTTT
* *
93843593 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
* * *
93843621 AGGCCCAATCACATTCATATGGCCCGTT
1 AGGCCCAATCACATTCACATGGCCCATC
93843649 AGGCCCAA
1 AGGCCCAA
93843657 CTACTTCTCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.25, C:0.36, G:0.19, T:0.20
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:93852358 original size:20 final size:20
Alignment explanation
Indices: 93852321--93852365 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
93852311 CTGTTTTGTT
*
93852321 ATGGG-CCAGCTGTATTGAA
1 ATGGGCCCAACTGTATTGAA
* *
93852340 ATGGGCCCAACTGTGTTGAT
1 ATGGGCCCAACTGTATTGAA
93852360 ATGGGC
1 ATGGGC
93852366 AAGGCCCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTGAA
Found at i:93852458 original size:60 final size:60
Alignment explanation
Indices: 93852356--93852496 Score: 153
Period size: 60 Copynumber: 2.3 Consensus size: 60
93852346 CCAACTGTGT
* * *
93852356 TGATATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTATGGAAAAGATTGATAC
1 TGATATGGGCTAGGCCCAGTATATCTCGACTTGTAATAGGGCTATGGAAAAGATTAATAC
* *** *
93852416 TGATATGGGCTAGGCCCAGTAT-TCTCTGA-TACTGTAA-GGGGCTATGGCCCAGATTAATAT
1 TGATATGGGCTAGGCCCAGTATATCTC-GACT--TGTAATAGGGCTATGGAAAAGATTAATAC
93852476 TGATATGGGCTAAGGCCCAGT
1 TGATATGGGCT-AGGCCCAGT
93852497 TAACTCTGAT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
59 5 0.07
60 50 0.72
61 14 0.20
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (60 bp):
TGATATGGGCTAGGCCCAGTATATCTCGACTTGTAATAGGGCTATGGAAAAGATTAATAC
Found at i:93860367 original size:11 final size:11
Alignment explanation
Indices: 93860351--93860376 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
93860341 CGAAGCCCAC
93860351 ATCACAATAAT
1 ATCACAATAAT
93860362 ATCACAATAAT
1 ATCACAATAAT
93860373 ATCA
1 ATCA
93860377 TACACGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:93860892 original size:27 final size:26
Alignment explanation
Indices: 93860862--93861322 Score: 291
Period size: 27 Copynumber: 17.2 Consensus size: 26
93860852 TATGTCAGTC
*
93860862 ATTTTACATTATAAGGGTATTTTGGTA
1 ATTTTACA-AATAAGGGTATTTTGGTA
* * * * *
93860889 ATTTTATACTACAAGGGTATTTCGATA
1 ATTTTACA-AATAAGGGTATTTTGGTA
* * *
93860916 ATTTTACAAAT-CGGGTGTGTTTCAGTA
1 ATTTTACAAATAAGGGTAT-TTT-GGTA
* *
93860943 ATTTTACAAATTGAGGGTATTTCGGTA
1 ATTTTACAAA-TAAGGGTATTTTGGTA
* *
93860970 ATTTTACAAATCGAGGGTATTTTGATA
1 ATTTTACAAAT-AAGGGTATTTTGGTA
* * *
93860997 ATTTTACAAATCGAGGGTATTTCGATA
1 ATTTTACAAAT-AAGGGTATTTTGGTA
* * *
93861024 ATTTTACAAATCAAGGTTGTTTCGGTA
1 ATTTTACAAAT-AAGGGTATTTTGGTA
* *
93861051 ATTTTACAAATCGAGGGTGTTTTGGTA
1 ATTTTACAAAT-AAGGGTATTTTGGTA
* *
93861078 ATTTTATAAATCAAGGCTATTTTGGTA
1 ATTTTACAAAT-AAGGGTATTTTGGTA
* *
93861105 ATTTTACAAATTAAGGGTGTTTTGATA
1 ATTTTACAAA-TAAGGGTATTTTGGTA
* **
93861132 ATTTCACAAATTGGGGGTATTTTGGTA
1 ATTTTACAAA-TAAGGGTATTTTGGTA
* **
93861159 ATTTTACAAATCGAGGGTATTTCAGTA
1 ATTTTACAAAT-AAGGGTATTTTGGTA
* * **
93861186 ATTTCAC-AATCGAGGGTATTTCAGTA
1 ATTTTACAAAT-AAGGGTATTTTGGTA
* **
93861212 ATTTTACAAATTGAGGGTATTTCAGTA
1 ATTTTACAAA-TAAGGGTATTTTGGTA
* * *
93861239 ATTTAAC-AATCGAGGGT-TTTTCGATA
1 ATTTTACAAAT-AAGGGTATTTT-GGTA
** *
93861265 ATTTTACAAATTGGGGGTATTTCGGTA
1 ATTTTACAAA-TAAGGGTATTTTGGTA
* * * *
93861292 ATTTTGCAAATCGAGGGTACTTTAGTA
1 ATTTTACAAAT-AAGGGTATTTTGGTA
93861319 ATTT
1 ATTT
93861323 CTCTTTATTA
Statistics
Matches: 360, Mismatches: 59, Indels: 30
0.80 0.13 0.07
Matches are distributed among these distances:
25 9 0.03
26 47 0.13
27 290 0.81
28 9 0.03
29 5 0.01
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (26 bp):
ATTTTACAAATAAGGGTATTTTGGTA
Found at i:93860920 original size:54 final size:52
Alignment explanation
Indices: 93860875--93861322 Score: 361
Period size: 54 Copynumber: 8.3 Consensus size: 52
93860865 TTACATTATA
* * *
93860875 AGGGTATTTTGGTAATTTTA-TACTACAAGGGTATTTCGATAATTTTACAAAT
1 AGGGTATTTTGGTAATTTTACAAAT-CGAGGGTATTTCGATAATTTTACAAAT
* * * * *
93860927 CGGGTGTGTTTCAGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAAT
1 AGGGTAT-TTT-GGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAAT
*
93860981 CGAGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAAT
1 --AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAAT
* * * * *
93861035 CAAGGT-TGTTTCGGTAATTTTACAAATCGAGGGTGTTTTGGTAATTTTATAAAT
1 -AGGGTAT-TTT-GGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAAT
* ** * * *
93861089 CAAGGCTATTTTGGTAATTTTACAAATTAAGGGTGTTTTGATAATTTCACAAATT
1 --AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAA-T
* *
93861144 GGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTC-AGTAATTTCAC-AAT
1 -AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGA-TAATTTTACAAAT
** * *
93861196 CGAGGGTATTTCAGTAATTTTACAAATTGAGGGTATTTC-AGTAATTTAAC-AAT
1 --AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGA-TAATTTTACAAAT
* * * * *
93861249 CGAGGGT-TTTTCGATAATTTTACAAATTGGGGGTATTTCGGTAATTTTGCAAAT
1 --AGGGTATTTT-GGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAAT
* *
93861303 CGAGGGTACTTTAGTAATTT
1 --AGGGTATTTTGGTAATTT
93861323 CTCTTTATTA
Statistics
Matches: 329, Mismatches: 51, Indels: 30
0.80 0.12 0.07
Matches are distributed among these distances:
52 10 0.03
53 98 0.30
54 200 0.61
55 15 0.05
56 6 0.02
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (52 bp):
AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAAT
Found at i:93860960 original size:81 final size:80
Alignment explanation
Indices: 93860875--93861310 Score: 468
Period size: 81 Copynumber: 5.4 Consensus size: 80
93860865 TTACATTATA
* * * * * *
93860875 AGGGTATTTTGGTAATTTTA-TACTACAAGGGTATTTCGATAATTTTACAAATCG-GGTGTGTTT
1 AGGGTATTTCGGTAATTTTACAAAT-CGAGGGTATTTTGATAATTTTACAAATCGAGG-GTATTT
93860938 CAGTAATTTTACAAATTG
64 C-GTAATTTTACAAATTG
93860956 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCG
**
93861021 ATAATTTTACAAATCA
66 -TAATTTTACAAATTG
* * * * * * * *
93861037 AGGTTGTTTCGGTAATTTTACAAATCGAGGGTGTTTTGGTAATTTTATAAATCAAGGCTATTTTG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCGAGGGTA-TTTC
*
93861102 GTAATTTTACAAATTA
65 GTAATTTTACAAATTG
* * * * * * *
93861118 AGGGTGTTTTGATAATTTCACAAATTGGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCA
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCGAGGGTATTTC-
* *
93861183 GTAATTTCAC-AATCG
65 GTAATTTTACAAATTG
* * * * *
93861198 AGGGTATTTCAGTAATTTTACAAATTGAGGGTA-TTTCAGTAATTTAAC-AATCGAGGGTTTTTC
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGA-TAATTTTACAAATCGAGGGTATTTC
93861261 GATAATTTTACAAATTG
65 G-TAATTTTACAAATTG
* *
93861278 GGGGTATTTCGGTAATTTTGCAAATCGAGGGTA
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTA
93861311 CTTTAGTAAT
Statistics
Matches: 300, Mismatches: 47, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
78 1 0.00
79 25 0.08
80 75 0.25
81 191 0.64
82 8 0.03
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (80 bp):
AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCGAGGGTATTTCG
TAATTTTACAAATTG
Found at i:93868683 original size:4 final size:4
Alignment explanation
Indices: 93868674--93868702 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
93868664 AAAAAAATTA
93868674 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
93868703 TACATACATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:93874965 original size:18 final size:18
Alignment explanation
Indices: 93874942--93874982 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
93874932 CAACATCGTG
93874942 AGTCATATATTTTGATAC
1 AGTCATATATTTTGATAC
93874960 AGTCATATATTTTGATAC
1 AGTCATATATTTTGATAC
93874978 AGTCA
1 AGTCA
93874983 AAATGTGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.41
Consensus pattern (18 bp):
AGTCATATATTTTGATAC
Found at i:93875687 original size:67 final size:67
Alignment explanation
Indices: 93875614--93875826 Score: 170
Period size: 67 Copynumber: 3.1 Consensus size: 67
93875604 TTGATTCATA
93875614 CAAAATATTAATTGTATATATTTTACCTAATTTATTAATATAAACAATTATATTAATTAATTTTG
1 CAAAATATTAATTGTATATATTTTACCTAATTTATTAATATAAACAATTATATTAATTAATTTTG
93875679 GT
66 GT
** * ** * * *
93875681 CAAAATA-TAAAAG-ACATGAAAATTA-AT-ATTCTTTTGGAA-ATAATATAATTAATATATGAA
1 CAAAATATTAATTGTATAT--ATTTTACCTAATT-TATT--AATATAA-ACAATT-ATAT-T-AA
* * *
93875741 TTTGATTCAT--A
57 -TTAATT-TTGGT
*
93875752 CAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAACAATTATATTAATTAATTTTG
1 CAAAATATTAATTGTATATATTTTACCTAATTTATTAATATAAACAATTATATTAATTAATTTTG
93875817 GT
66 GT
93875819 CAAAATAT
1 CAAAATAT
93875827 AAAAGCCATA
Statistics
Matches: 105, Mismatches: 23, Indels: 36
0.64 0.14 0.22
Matches are distributed among these distances:
65 7 0.07
66 13 0.12
67 25 0.24
68 8 0.08
69 8 0.08
70 8 0.08
71 17 0.16
72 12 0.11
73 7 0.07
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.43
Consensus pattern (67 bp):
CAAAATATTAATTGTATATATTTTACCTAATTTATTAATATAAACAATTATATTAATTAATTTTG
GT
Found at i:93875757 original size:71 final size:70
Alignment explanation
Indices: 93875681--93875897 Score: 166
Period size: 71 Copynumber: 3.1 Consensus size: 70
93875671 TAATTTTGGT
93875681 CAAAATATAAAAGACAT-GAAAATTAATATTCTTTTGGAAATAATATAATTAATATATGAATTTG
1 CAAAATATAAAAG-CATAG-AAATTAATATTCTTTTGGAAATAATATAATTAATATATGAATTTG
93875745 ATTCATA
64 ATTCATA
** * * ** * * *
93875752 CAAAATATTAATTGTATATATTTTACCAAATT-TATT--AATATAA-ACAATT-ATAT-T-AA-T
1 CAAAATA-TAAAAGCATAGAAATTA--ATATTCTTTTGGAA-ATAATATAATTAATATATGAATT
* * *
93875809 TAATT-TTGGT
62 TGATTCAT--A
*
93875819 CAAAATATAAAAGCCATAGAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGA
1 CAAAATATAAAAG-CATAGAAATTAATATTCTTTTGGAAATAATATAATTAATATATGAATTTGA
93875884 TTCATA
65 TTCATA
93875890 CAAAATAT
1 CAAAATAT
93875898 TATTTGTATT
Statistics
Matches: 104, Mismatches: 25, Indels: 34
0.64 0.15 0.21
Matches are distributed among these distances:
65 5 0.05
66 12 0.12
67 19 0.18
68 8 0.08
69 8 0.08
70 8 0.08
71 27 0.26
72 12 0.12
73 5 0.05
ACGTcount: A:0.47, C:0.06, G:0.07, T:0.39
Consensus pattern (70 bp):
CAAAATATAAAAGCATAGAAATTAATATTCTTTTGGAAATAATATAATTAATATATGAATTTGAT
TCATA
Found at i:93875842 original size:138 final size:138
Alignment explanation
Indices: 93875585--93876143 Score: 953
Period size: 138 Copynumber: 4.1 Consensus size: 138
93875575 GAGAACATAG
*
93875585 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCTAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
93875650 AATATAAACAATTATATTAATTAATTTTGGTCAAAATATAAAAGACAT-GAAAATTAATATTCTT
66 AATATAAACAATTATATTAATTAATTTTGGTCAAAATATAAAAGACATAG-AAATTAATATTCTT
*
93875714 TTGGAAATA
130 TTGGAAAGA
93875723 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
*
93875788 AATATAAACAATTATATTAATTAATTTTGGTCAAAATATAAAAGCCATAGAAATTAATATTCTTT
66 AATATAAACAATTATATTAATTAATTTTGGTCAAAATATAAAAGACATAGAAATTAATATTCTTT
93875853 TGGAAAGA
131 TGGAAAGA
* *
93875861 ATATAATTAATATATGAATTTGATTCATACAAAATATTATTTGTATTTATTTTACCAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
* *
93875926 AATATAAA-AAGTTATATTAATTAATTTTGATCAAAATATAAAAGACATGGAAATTAATATTCTT
66 AATATAAACAA-TTATATTAATTAATTTTGGTCAAAATATAAAAGACATAGAAATTAATATTCTT
93875990 TTGGAAAGA
130 TTGGAAAGA
* * *
93875999 ATATAAATAAT-TATGTATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
** * *
93876063 AATATAAGTAGTTATATTAATTAATTTTGGTCAAAATATAAAAGGCATAGAAATTAATATTCTTT
66 AATATAAACAATTATATTAATTAATTTTGGTCAAAATATAAAAGACATAGAAATTAATATTCTTT
93876128 TGGAAAGA
131 TGGAAAGA
93876136 ATATAATT
1 ATATAATT
93876144 CCTTTTTCTA
Statistics
Matches: 399, Mismatches: 19, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
137 124 0.31
138 274 0.69
139 1 0.00
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.42
Consensus pattern (138 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
AATATAAACAATTATATTAATTAATTTTGGTCAAAATATAAAAGACATAGAAATTAATATTCTTT
TGGAAAGA
Found at i:93884238 original size:75 final size:76
Alignment explanation
Indices: 93884109--93884248 Score: 219
Period size: 75 Copynumber: 1.9 Consensus size: 76
93884099 ATTAATTATC
* * * *
93884109 TTTTGGAAAGAATATAATTCTTTTTTTGTAACTTTTCATTTGTCTTCTATATTAATAAGGGAATA
1 TTTTGGAAAGAATATAATTCTCTTTTTCTAACTTTTCATTTGCCTTCTATATTAATAAAGGAATA
93884174 CTCATTTATTT
66 CTCATTTATTT
* *
93884185 TTTTGGAAAGAATATAATTC-CTTTTTCTAACTTTTCGTTTGCCTTCTCTATTAATAAAGGAATA
1 TTTTGGAAAGAATATAATTCTCTTTTTCTAACTTTTCATTTGCCTTCTATATTAATAAAGGAATA
93884249 ATCTTGATTT
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
75 38 0.66
76 20 0.34
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.49
Consensus pattern (76 bp):
TTTTGGAAAGAATATAATTCTCTTTTTCTAACTTTTCATTTGCCTTCTATATTAATAAAGGAATA
CTCATTTATTT
Found at i:93885415 original size:23 final size:24
Alignment explanation
Indices: 93885371--93885415 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
93885361 CAAGTCCTAC
* *
93885371 CCATCCAGCCTCTACTCACCATCT
1 CCATCCAACCTCTACACACCATCT
*
93885395 CCATCCAACC-CTACACTCCAT
1 CCATCCAACCTCTACACACCAT
93885416 GTGGGGATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 9 0.50
24 9 0.50
ACGTcount: A:0.24, C:0.51, G:0.02, T:0.22
Consensus pattern (24 bp):
CCATCCAACCTCTACACACCATCT
Found at i:93888427 original size:13 final size:13
Alignment explanation
Indices: 93888409--93888433 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
93888399 GAGATCGATT
93888409 TCAAAATTGAAAC
1 TCAAAATTGAAAC
93888422 TCAAAATTGAAA
1 TCAAAATTGAAA
93888434 GTTATGACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.12, G:0.08, T:0.24
Consensus pattern (13 bp):
TCAAAATTGAAAC
Found at i:93892630 original size:40 final size:40
Alignment explanation
Indices: 93892570--93892780 Score: 284
Period size: 40 Copynumber: 5.3 Consensus size: 40
93892560 CCTTCGGGGT
* * *
93892570 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTTGAGAC
1 TTAGCCCGGTTATAG-TAACTCGCACAAATGCCTTCGAGAC
* *
93892609 TTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGAC
* *
93892649 TTAGCCCAGTTATAGTAACTCGCACAATTGCCTTCGAGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGAC
* * *
93892689 TTGGCCCGGTTATAGTAACTCGCAAAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGAC
* *
93892729 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCG-GGC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGAC
93892768 TTAGCCCGGTTAT
1 TTAGCCCGGTTAT
93892781 CAATCCGAAT
Statistics
Matches: 153, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 19 0.12
40 134 0.88
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGAC
Found at i:93901451 original size:27 final size:27
Alignment explanation
Indices: 93901413--93901520 Score: 155
Period size: 27 Copynumber: 4.0 Consensus size: 27
93901403 GAGGAAGCGT
*
93901413 TCTGGTGGCTCTGCCACAAATATCT-AA
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
*
93901440 TCTGGTGGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
93901468 TCTGGTGGCTCTGCCACAATATCTGTA
1 TCTGGTGGCTCTGCCACAATATCTGTA
* *
93901495 TCTGGTGACTCTGTCACAATATCTGT
1 TCTGGTGGCTCTGCCACAATATCTGT
93901521 TCTAGTAGCC
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
27 58 0.77
28 17 0.23
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATATCTGTA
Found at i:93901498 original size:55 final size:54
Alignment explanation
Indices: 93901412--93901521 Score: 168
Period size: 55 Copynumber: 2.0 Consensus size: 54
93901402 GGAGGAAGCG
*
93901412 TTCTGGTGGCTCTGCCACAAATATCTAATCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTAATCTGGTGACTCTGCCAC-AATATCTGT
* *
93901467 TTCTGGTGGCTCTGCCAC-AATATCTGTATCTGGTGACTCTGTCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCT-AATCTGGTGACTCTGCCACAATATCTGT
93901521 T
1 T
93901522 CTAGTAGCCA
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
54 17 0.33
55 34 0.67
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (54 bp):
TTCTGGTGGCTCTGCCACAAATATCTAATCTGGTGACTCTGCCACAATATCTGT
Found at i:93904233 original size:40 final size:41
Alignment explanation
Indices: 93904189--93904372 Score: 183
Period size: 40 Copynumber: 4.6 Consensus size: 41
93904179 GCTCCTCGTT
*
93904189 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAATTCGCA
* *
93904229 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAATTCGCA
93904269 CAAATGCCTTCGGG-CTTAGCCCGGAATTAT--T-ATATCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTATAGTAAT-TCGCA
* * * *
93904308 CAAATGCCTTC-GAATCTTAGTCCGGATGT-T-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TATAGT-AATTCGCA
93904349 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
93904373 CATCATTCAA
Statistics
Matches: 122, Mismatches: 11, Indels: 23
0.78 0.07 0.15
Matches are distributed among these distances:
38 2 0.02
39 45 0.37
40 66 0.54
41 8 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAATTCGCA
Found at i:93904333 original size:79 final size:82
Alignment explanation
Indices: 93904189--93904372 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 82
93904179 GCTCCTCGTT
* *
93904189 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAATTCGCACAAATGCCTTCGGAACTTAACCCG
*
93904253 GAT-TTAGTAAC-TCGCA
66 GATGTT-GTAACTTAGCA
**
93904269 CAAATGCCTTCGGG-CTTAGCCCGGAATTAT--T-ATATCGCACAAATGCCTTC-GAATCTTAGT
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTATAGTAAT-TCGCACAAATGCCTTCGGAA-CTTAAC
*
93904329 CCGGATGTTGTCACTTAGCA
63 CCGGATGTTGTAACTTAGCA
93904349 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
93904373 CATCATTCAA
Statistics
Matches: 91, Mismatches: 6, Indels: 16
0.81 0.05 0.14
Matches are distributed among these distances:
78 14 0.15
79 52 0.57
80 21 0.23
81 4 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAATTCGCACAAATGCCTTCGGAACTTAACCCG
GATGTTGTAACTTAGCA
Found at i:93910150 original size:95 final size:95
Alignment explanation
Indices: 93909987--93910176 Score: 362
Period size: 95 Copynumber: 2.0 Consensus size: 95
93909977 CTAAGCGAGT
*
93909987 AGGTCCTGTGGCTTACCAAGTGAAATTACCTCCGGCGTTTGACAGGATTCACGATGTTTTCGACG
1 AGGTCCTATGGCTTACCAAGTGAAATTACCTCCGGCGTTTGACAGGATTCACGATGTTTTCGACG
93910052 TCTCCATGTTAAGGCGATATCGTTCTGACC
66 TCTCCATGTTAAGGCGATATCGTTCTGACC
*
93910082 AGGTCCTATGGCTTACCAATTGAAATTACCTCCGGCGTTTGACAGGATTCACGATGTTTTCGACG
1 AGGTCCTATGGCTTACCAAGTGAAATTACCTCCGGCGTTTGACAGGATTCACGATGTTTTCGACG
93910147 TCTCCATGTTAAGGCGATATCGTTCTGACC
66 TCTCCATGTTAAGGCGATATCGTTCTGACC
93910177 CTACTCATGT
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 93 1.00
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.31
Consensus pattern (95 bp):
AGGTCCTATGGCTTACCAAGTGAAATTACCTCCGGCGTTTGACAGGATTCACGATGTTTTCGACG
TCTCCATGTTAAGGCGATATCGTTCTGACC
Found at i:93912284 original size:27 final size:27
Alignment explanation
Indices: 93912235--93912321 Score: 122
Period size: 27 Copynumber: 3.2 Consensus size: 27
93912225 GGAGGAAATG
93912235 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCAC-AATATCTGT
93912263 TTCTGGTGGCTCTGCCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGT
* * * *
93912290 ATCTGGTGACTCTGTCACAGTATCTG-
1 TTCTGGTGGCTCTGCCACAATATCTGT
93912316 TTCTGG
1 TTCTGG
93912322 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 5 0.09
27 31 0.57
28 18 0.33
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAATATCTGT
Found at i:93915494 original size:16 final size:17
Alignment explanation
Indices: 93915470--93915503 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
93915460 TAATAACAAG
*
93915470 ATTCGTCTTAGGT-TTT
1 ATTCCTCTTAGGTATTT
93915486 ATTCCTCTTAGGTATTT
1 ATTCCTCTTAGGTATTT
93915503 A
1 A
93915504 GGGGGTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.53
Consensus pattern (17 bp):
ATTCCTCTTAGGTATTT
Found at i:93925107 original size:29 final size:29
Alignment explanation
Indices: 93925044--93925111 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
93925034 TAATCAACCG
93925044 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
93925073 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
93925102 CGCACACTTA
1 CGCACACTTA
93925112 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:93925224 original size:174 final size:174
Alignment explanation
Indices: 93924933--93925260 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
93924923 AACTCAAGGT
* *
93924933 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
93924998 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
93925063 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
93925107 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
93925172 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
93925237 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
93925261 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:93925252 original size:29 final size:30
Alignment explanation
Indices: 93925213--93925291 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
93925203 CTTAATAATC
93925213 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
93925243 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
93925272 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
93925292 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:93945229 original size:53 final size:54
Alignment explanation
Indices: 93945160--93945366 Score: 200
Period size: 53 Copynumber: 3.8 Consensus size: 54
93945150 TTCCTTTTTA
* * * * *
93945160 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGCATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
93945213 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGTCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
93945267 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
93945322 AACTTACCAATGCCATGCCTTGGCATGGTTTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
93945367 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 44 0.36
54 37 0.31
55 40 0.33
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:93945299 original size:55 final size:53
Alignment explanation
Indices: 93945172--93945366 Score: 165
Period size: 55 Copynumber: 3.6 Consensus size: 53
93945162 CTTACCATTT
* *
93945172 CCATGTCTTGACATGGTCTTACGTGGCATCCTTGCCTTATGAACTCACCATTG
1 CCATGTCTTGACATGGTCTTACATGGCATCCTTGCCTTATGAACTCACCAATG
* * * * * ** * *
93945225 CCATGCCTTGGCATGGTCTTACATGGGATCTTTGTCTTATAGTAGTTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGCATCCTTGCCTTAT-G-AACTCACCAATG
*** * * *
93945280 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAATG
1 CCATGTCTTGACATGGTCTTACATGGCATCCTTGCCTTAT-GAACTCACCAATG
* * * * *
93945334 CCATGCCTTGGCATGGTTTTACTTGGTATCCTT
1 CCATGTCTTGACATGGTCTTACATGGCATCCTT
93945367 AAACCCTAAT
Statistics
Matches: 111, Mismatches: 29, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 34 0.31
54 37 0.33
55 40 0.36
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGCATCCTTGCCTTATGAACTCACCAATG
Found at i:93949403 original size:40 final size:40
Alignment explanation
Indices: 93949345--93949567 Score: 365
Period size: 40 Copynumber: 5.6 Consensus size: 40
93949335 GGATGATAAC
*
93949345 CGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATTTT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTT
* *
93949385 CGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATTTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTT
*
93949425 CAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTT
*
93949465 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTT
* ***
93949505 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAAAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTT
93949545 CGGGCTAAGTCCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGCATTT
93949568 AAGCGATTAG
Statistics
Matches: 170, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 170 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTT
Found at i:93952498 original size:38 final size:40
Alignment explanation
Indices: 93952347--93952569 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
93952337 GCTACTCGTT
* *
93952347 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
93952387 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
93952427 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
93952466 CAAATGCCTTCGGG-CTTAG-CCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
93952504 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
93952545 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
93952570 CATCATTCAA
Statistics
Matches: 163, Mismatches: 12, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
37 2 0.01
38 30 0.18
39 48 0.29
40 70 0.43
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:93952529 original size:117 final size:120
Alignment explanation
Indices: 93952347--93952569 Score: 287
Period size: 117 Copynumber: 1.9 Consensus size: 120
93952337 GCTACTCGTT
* *
93952347 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
93952412 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * **
93952466 CAAATGCCTTCGGG-CTTAG-CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
93952527 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
93952570 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
116 4 0.04
117 49 0.54
118 23 0.26
119 14 0.16
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:93960420 original size:79 final size:78
Alignment explanation
Indices: 93960309--93960532 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
93960299 GCTACTCGTT
* * *
93960309 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAA-TGCCTTCGGGACTTAGCCCGG
*
93960374 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
93960389 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCAC-AATGCCTTCGGGACTTAGCCCGG
*
93960452 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * * *
93960467 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAATGCCTTCGGGACTTAGCCCGG
93960532 A
64 A
93960533 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 36 0.29
79 56 0.45
80 33 0.26
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:93960426 original size:39 final size:40
Alignment explanation
Indices: 93960309--93960532 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
93960299 GCTACTCGTT
* *
93960309 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
93960349 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
93960389 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
93960428 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
93960467 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
93960508 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
93960533 CATCATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.01
39 74 0.45
40 75 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:93964284 original size:27 final size:27
Alignment explanation
Indices: 93964254--93964430 Score: 203
Period size: 27 Copynumber: 6.5 Consensus size: 27
93964244 TATTGAGTCT
* * * *
93964254 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTACATAGTCAAATC
* *
93964281 GCACACTTAGTGCTACGTAATCAAATC
1 GCACACTTAGTGCTACATAGTCAAATC
93964308 GCACACTTAGTGCTACATAGTCAAACTC
1 GCACACTTAGTGCTACATAGTCAAA-TC
** * *
93964336 GCACACTTAGTGCCGCATGGTCAATTC
1 GCACACTTAGTGCTACATAGTCAAATC
* **
93964363 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CATAGTCAAATC
*
93964390 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACATAGTCAAATC
93964417 GCACACTTAGTGCT
1 GCACACTTAGTGCT
93964431 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAGTCAAATC
Found at i:93964392 original size:82 final size:81
Alignment explanation
Indices: 93964274--93964429 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
93964264 TGCTATATAA
* *
93964274 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
93964339 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
93964356 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
93964420 CACTTAGTGC
65 CACTTAGTGC
93964430 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:93972319 original size:27 final size:27
Alignment explanation
Indices: 93972289--93972466 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
93972279 ATATTGAGTC
* * * *
93972289 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
93972316 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
93972343 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
93972371 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
93972398 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
93972425 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
93972452 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
93972467 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:93972428 original size:82 final size:81
Alignment explanation
Indices: 93972310--93972465 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
93972300 TGCTATATAA
* *
93972310 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
93972375 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
93972392 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
93972456 CACTTAGTGC
65 CACTTAGTGC
93972466 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:93983207 original size:29 final size:29
Alignment explanation
Indices: 93983174--93983261 Score: 71
Period size: 29 Copynumber: 3.2 Consensus size: 29
93983164 TCAATGCCAC
93983174 GCCTTGGCATGGTCTTACATGATTTCCTT
1 GCCTTGGCATGGTCTTACATGATTTCCTT
** * *
93983203 GCCTT---ATAGAACTTATCA--A-TGCCCT
1 GCCTTGGCAT-GGTCTTA-CATGATTTCCTT
*
93983228 ACCTTGGCATGGTCTTACATGATTTCCTT
1 GCCTTGGCATGGTCTTACATGATTTCCTT
93983257 GCCTT
1 GCCTT
93983262 ATAGAATTTA
Statistics
Matches: 41, Mismatches: 10, Indels: 16
0.61 0.15 0.24
Matches are distributed among these distances:
25 8 0.20
26 5 0.12
27 10 0.24
28 5 0.12
29 13 0.32
ACGTcount: A:0.18, C:0.26, G:0.17, T:0.39
Consensus pattern (29 bp):
GCCTTGGCATGGTCTTACATGATTTCCTT
Found at i:93983425 original size:54 final size:54
Alignment explanation
Indices: 93982995--93983418 Score: 492
Period size: 54 Copynumber: 7.9 Consensus size: 54
93982985 TTTCCTTTTT
* * * * * * *
93982995 GAACTTACCATTGTCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* * * ** *
93983048 GAACTCACCAATGCCATGCCTTAGCATGGTCTTACATGGGA-CCTTTGCCTTACA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTATA
* * * * *
93983102 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCCTATA
1 G-AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* *
93983157 GAACTTATCAATGCCACGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* * *
93983211 GAACTTATCAATGCCCTACCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* * * * * *
93983265 GAATTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCCTACCCTATT
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* * * * **
93983319 TAACTTATCAATGCCATGCCTTGGCATGTTCTTAGATGATATCCATATCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
*
93983373 GAACTTATCAATGCCATGCCTTGTCATGGTCTTACATGATATCCTT
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
93983419 ATCTTATCAA
Statistics
Matches: 320, Mismatches: 47, Indels: 7
0.86 0.13 0.02
Matches are distributed among these distances:
52 2 0.01
53 41 0.13
54 233 0.73
55 42 0.13
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
Found at i:93984272 original size:30 final size:31
Alignment explanation
Indices: 93984229--93984286 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 31
93984219 CTAACTCAAA
93984229 CTTTGACAAAATTACAATTTTACCCCTAAAC
1 CTTTGACAAAATTACAATTTTACCCCTAAAC
* ** *
93984260 CTTTG-CAGAATTATGATTTTTCCCCTA
1 CTTTGACAAAATTACAATTTTACCCCTA
93984287 GGCTCAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 18 0.78
31 5 0.22
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (31 bp):
CTTTGACAAAATTACAATTTTACCCCTAAAC
Found at i:93988285 original size:3 final size:3
Alignment explanation
Indices: 93988277--93988301 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
93988267 AGACTTACCG
93988277 CCA CCA CCA CCA CCA CCA CCA CCA C
1 CCA CCA CCA CCA CCA CCA CCA CCA C
93988302 AGCTACCTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00
Consensus pattern (3 bp):
CCA
Found at i:93989035 original size:28 final size:28
Alignment explanation
Indices: 93989003--93989056 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
93988993 GTACAGTCTA
* *
93989003 GGCCTTAGCCCTATACAGTAACAGTGTG
1 GGCCTAAGCCCCATACAGTAACAGTGTG
* *
93989031 GGCCTAAGCCCCATGCAGTATCAGTG
1 GGCCTAAGCCCCATACAGTAACAGTG
93989057 CAGTGTAATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (28 bp):
GGCCTAAGCCCCATACAGTAACAGTGTG
Found at i:93989269 original size:27 final size:26
Alignment explanation
Indices: 93989210--93989291 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 26
93989200 AGCTGTCAGA
* *
93989210 AACAGTAAATGTGGCAAAGCCACCATT
1 AACAGT-AATGTGGCATAGCCACCAGT
*
93989237 ATCAGTAATTGTGGCATAGCCACCAGT
1 AACAGTAA-TGTGGCATAGCCACCAGT
* *
93989264 AACAGTGAATGTGACATAGTCACCAGT
1 AACAGT-AATGTGGCATAGCCACCAGT
93989291 A
1 A
93989292 CTGTAACGCC
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.04
27 43 0.91
28 2 0.04
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (26 bp):
AACAGTAATGTGGCATAGCCACCAGT
Found at i:93990572 original size:46 final size:46
Alignment explanation
Indices: 93990401--93990576 Score: 140
Period size: 46 Copynumber: 3.8 Consensus size: 46
93990391 TGTAACCCGC
* * * *
93990401 CCATAAGCGAACTTGGACTCAACTCAATGAGCTCGGGCGTTCGGAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* ** * * * *
93990447 CCGTAATTGAACTCGGGCTCAACTCAACGAGCTCGGATG-CCTCATT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCA-T
* * * * *
93990493 ACATCTCA-CGAACTCAGACTCAACCCAACGAGTTCGGACGTTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * *
93990540 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
93990577 TGCCCAAATA
Statistics
Matches: 97, Mismatches: 28, Indels: 10
0.72 0.21 0.07
Matches are distributed among these distances:
45 4 0.04
46 59 0.61
47 29 0.30
48 5 0.05
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:93992023 original size:27 final size:27
Alignment explanation
Indices: 93991993--93992083 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 27
93991983 GGCATAATCG
**
93991993 TCATTTTACCAAACAAGGGTATTACAA
1 TCATTTTACCCTACAAGGGTATTACAA
* * *
93992020 TCATTTTACCCTACAGGGGCATTACAG
1 TCATTTTACCCTACAAGGGTATTACAA
*
93992047 TCATTTTACCCTAC-AGTGGTATTACGA
1 TCATTTTACCCTACAAG-GGTATTACAA
*
93992074 TCACTTTACC
1 TCATTTTACC
93992084 TATTTTGGGG
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.02
27 52 0.98
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (27 bp):
TCATTTTACCCTACAAGGGTATTACAA
Found at i:93997341 original size:33 final size:33
Alignment explanation
Indices: 93997299--93997364 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
93997289 AATATATAAC
*
93997299 ACAGTCTGGGCTTTAGCCCTATACAGTATCAGT
1 ACAGTCTGGGCTTTAGCCCTATACAGTAACAGT
93997332 ACAGTCTGGGCTTTAGCCCTATACAGTAACAGT
1 ACAGTCTGGGCTTTAGCCCTATACAGTAACAGT
93997365 GTGGGCTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (33 bp):
ACAGTCTGGGCTTTAGCCCTATACAGTAACAGT
Found at i:93997580 original size:27 final size:27
Alignment explanation
Indices: 93997550--93997628 Score: 68
Period size: 27 Copynumber: 2.9 Consensus size: 27
93997540 TGCCAGAAAC
*
93997550 AGTAAATGTGGCAAAGCCACTAGTATT
1 AGTAAATGTGGCAAAGCCACCAGTATT
** * **
93997577 AGTAGTTGTGGCATAGCCACCAGTAAC
1 AGTAAATGTGGCAAAGCCACCAGTATT
* * * *
93997604 AGTGAATGTGACATAGTCACCAGTA
1 AGTAAATGTGGCAAAGCCACCAGTA
93997629 CAATACTTCC
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (27 bp):
AGTAAATGTGGCAAAGCCACCAGTATT
Found at i:93997854 original size:26 final size:26
Alignment explanation
Indices: 93997769--93997858 Score: 99
Period size: 27 Copynumber: 3.4 Consensus size: 26
93997759 GGCATAATCT
**
93997769 TCATTTTACCAAACATGGGTATTACGG
1 TCATTTTACCCTACA-GGGTATTACGG
* * *
93997796 CCATTTTACCCTACCGGGGCATTACGG
1 TCATTTTACCCTA-CAGGGTATTACGG
* *
93997823 TTATTTTACCCTACAGGGTATTACGA
1 TCATTTTACCCTACAGGGTATTACGG
93997849 TCATTTTACC
1 TCATTTTACC
93997859 TATTTTGGGG
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
26 19 0.37
27 31 0.61
28 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.34
Consensus pattern (26 bp):
TCATTTTACCCTACAGGGTATTACGG
Found at i:94006486 original size:46 final size:45
Alignment explanation
Indices: 94006436--94006611 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
94006426 TGGTTGAGCA
94006436 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
94006482 TCCGAACTCGTTGAGTTGAGTTCGAGTTCA-TGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* **
94006527 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
94006575 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94006612 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.58
47 28 0.26
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:94006592 original size:93 final size:93
Alignment explanation
Indices: 94006433--94006604 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
94006423 GGATGGTTGA
***
94006433 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
*
94006498 TGAGTTCGAGTTCATGAAATGTAACTAG
66 TGAGTCCGAGTTCATGAAATGTAACTAG
* * * *
94006526 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACACCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
94006591 TGAGTCCGAGTTCA
66 TGAGTCCGAGTTCA
94006605 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCATGAAATGTAACTAG
Found at i:94018474 original size:40 final size:40
Alignment explanation
Indices: 94018311--94018461 Score: 250
Period size: 40 Copynumber: 3.8 Consensus size: 40
94018301 TATTCGAATG
94018311 ATATCCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
94018350 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
94018390 ATATCTGGGCTAAGTCCCGAATGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
94018430 ATATCCGGGCTAAGACCCGAAGGTATTTGTGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
94018462 GAGTTGCGAT
Statistics
Matches: 104, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:94018474 original size:80 final size:79
Alignment explanation
Indices: 94018310--94018481 Score: 249
Period size: 80 Copynumber: 2.2 Consensus size: 79
94018300 TTATTCGAAT
* *
94018310 GATATCCGGGCTAAGCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 GATATCTGGGCTAAGCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
94018375 TTTGTGCTAGTGAC
66 TTTGTGCGAGTGAC
* * * *
94018389 TATATCTGGGCTAAGTCCCGAATGCATTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGT
1 GATATCTGGGCTAAG-CCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGC
94018454 ATTTGTGCGAGTTG-C
65 ATTTGTGCGAG-TGAC
94018469 GATATCT-GGCTAA
1 GATATCTGGGCTAA
94018482 ATCCTGAAGG
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
79 19 0.23
80 62 0.75
81 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (79 bp):
GATATCTGGGCTAAGCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTGAC
Found at i:94021812 original size:280 final size:280
Alignment explanation
Indices: 94021311--94021871 Score: 1061
Period size: 280 Copynumber: 2.0 Consensus size: 280
94021301 GTGATTGCAT
*
94021311 TGATTGACCCTGGTTCTACTCATTCTTATATATGTGAGACTTTAGCATCTAGTAAGACTTTACCT
1 TGATTGACCCTGGTTCTACTCATTCTTATATATGTGAGACTTTAGCATCCAGTAAGACTTTACCT
94021376 GTTGAGTCTACTGAGTTCGTTATTATGGTGTCGAATCCCTTGGGTCATTGTGTGCTTGTTGATAA
66 GTTGAGTCTACTGAGTTCGTTATTATGGTGTCGAATCCCTTGGGTCATTGTGTGCTTGTTGATAA
94021441 AGTGTGTAAGAAATGTCCCCTAGTAATCCGAGGTTCCTATTTTCCGGCCGATTTGATGCTTTCAC
131 AGTGTGTAAGAAATGTCCCCTAGTAATCCGAGGTTCCTATTTTCCGGCCGATTTGATGCTTTCAC
*
94021506 CTTTTGATGAATTTGATGTTATCCTCGGTATGGATTGGTTAACCGTACATGATGCAATTGTAAAT
196 CGTTTGATGAATTTGATGTTATCCTCGGTATGGATTGGTTAACCGTACATGATGCAATTGTAAAT
94021571 TGCAAAAGAAAAACCATTGA
261 TGCAAAAGAAAAACCATTGA
*
94021591 TGATTGACCCTGGTTCTACTCATTCTTATATATGTGAGGCTTTAGCATCCAGTAAGACTTTACCT
1 TGATTGACCCTGGTTCTACTCATTCTTATATATGTGAGACTTTAGCATCCAGTAAGACTTTACCT
94021656 GTTGAGTCTACTGAGTTCGTTATTA-GAGTGTCGAATCCCTTGGGTCATTGTGTGCTTGTTGATA
66 GTTGAGTCTACTGAGTTCGTTATTATG-GTGTCGAATCCCTTGGGTCATTGTGTGCTTGTTGATA
* *
94021720 AAGTGTGTAAGAAATGTCCCCTAGTAATCCGAGGTTCCTGTTTTCCGGCCGATTTGATGCTTTTA
130 AAGTGTGTAAGAAATGTCCCCTAGTAATCCGAGGTTCCTATTTTCCGGCCGATTTGATGCTTTCA
94021785 CCGTTTGATGAATTTGATGTTATCCTCGGTATGGATTGGTTAACCGTACATGATGCAATTGTAAA
195 CCGTTTGATGAATTTGATGTTATCCTCGGTATGGATTGGTTAACCGTACATGATGCAATTGTAAA
94021850 TTGCAAAAGAAAAACCATTGA
260 TTGCAAAAGAAAAACCATTGA
94021871 T
1 T
94021872 TTGAGGTGTG
Statistics
Matches: 275, Mismatches: 5, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
279 1 0.00
280 274 1.00
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.37
Consensus pattern (280 bp):
TGATTGACCCTGGTTCTACTCATTCTTATATATGTGAGACTTTAGCATCCAGTAAGACTTTACCT
GTTGAGTCTACTGAGTTCGTTATTATGGTGTCGAATCCCTTGGGTCATTGTGTGCTTGTTGATAA
AGTGTGTAAGAAATGTCCCCTAGTAATCCGAGGTTCCTATTTTCCGGCCGATTTGATGCTTTCAC
CGTTTGATGAATTTGATGTTATCCTCGGTATGGATTGGTTAACCGTACATGATGCAATTGTAAAT
TGCAAAAGAAAAACCATTGA
Found at i:94028186 original size:40 final size:40
Alignment explanation
Indices: 94028131--94028272 Score: 189
Period size: 40 Copynumber: 3.6 Consensus size: 40
94028121 TATTCGAATG
94028131 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
94028171 ATATCCGGGCCAAGTCTCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
94028211 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTG-CG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
94028251 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
94028273 TACTTGGGTT
Statistics
Matches: 88, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 13 0.15
40 73 0.83
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:94029981 original size:24 final size:24
Alignment explanation
Indices: 94029931--94029982 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
94029921 GTGTTTTGTT
* *
94029931 GAGAAAATCAAGGAGAGGATTGGG
1 GAGAAAAGCAAGGAGAGGATTAGG
*
94029955 GAGAAAAGCAAGGAGAGGATTATG
1 GAGAAAAGCAAGGAGAGGATTAGG
94029979 GAGA
1 GAGA
94029983 GTTTTTAGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.44, C:0.04, G:0.40, T:0.12
Consensus pattern (24 bp):
GAGAAAAGCAAGGAGAGGATTAGG
Found at i:94034123 original size:39 final size:39
Alignment explanation
Indices: 94034064--94034243 Score: 281
Period size: 39 Copynumber: 4.6 Consensus size: 39
94034054 TATACATATA
*
94034064 TGCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
*
94034103 TGCTTCAGTTAGCCTTCGGGCTTTCGTTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
* *
94034142 TGCTTCAGTTAGCC-TCTAGGCTTCCATTTAGCACTTATG
1 TGCTTCAGTTAGCCTTC-GGGCTTCCGTTTAGCACTTATG
94034181 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
* **
94034220 TGCTTCAGCTAGATTTCGGGCTTC
1 TGCTTCAGTTAGCCTTCGGGCTTC
94034244 AGATCACGAT
Statistics
Matches: 129, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 2 0.02
39 125 0.97
40 2 0.02
ACGTcount: A:0.14, C:0.26, G:0.22, T:0.38
Consensus pattern (39 bp):
TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
Found at i:94037590 original size:38 final size:38
Alignment explanation
Indices: 94037521--94037644 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 38
94037511 TATACATATA
*
94037521 TGCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATG
1 TGCTTCAGTTAGCCT-CGGGCTTCCATTTAGCACTTATG
*
94037560 TGCTTCAGTTAGCCTCTGGCTTCCATTTAGCACTTATG
1 TGCTTCAGTTAGCCTCGGGCTTCCATTTAGCACTTATG
* *
94037598 TGCTTTAGCTAGCCTTCGGGCTTCCATTTAGCACTTATG
1 TGCTTCAGTTAGCC-TCGGGCTTCCATTTAGCACTTATG
94037637 TGCTTCAG
1 TGCTTCAG
94037645 CTATATTTCG
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 33 0.42
39 45 0.58
ACGTcount: A:0.15, C:0.27, G:0.21, T:0.38
Consensus pattern (38 bp):
TGCTTCAGTTAGCCTCGGGCTTCCATTTAGCACTTATG
Found at i:94037655 original size:39 final size:39
Alignment explanation
Indices: 94037537--94037660 Score: 162
Period size: 39 Copynumber: 3.2 Consensus size: 39
94037527 AGTTAGCCTC
* *
94037537 CGGGCTTCCGTTTAGCACTTATGTGCTTCAG-T-TAGCCT
1 CGGGCTTCCATTTAGCACTTATGTGCTTCAGCTATA-CTT
* * **
94037575 CTGGCTTCCATTTAGCACTTATGTGCTTTAGCTAGCCTT
1 CGGGCTTCCATTTAGCACTTATGTGCTTCAGCTATACTT
*
94037614 CGGGCTTCCATTTAGCACTTATGTGCTTCAGCTATATTT
1 CGGGCTTCCATTTAGCACTTATGTGCTTCAGCTATACTT
94037653 CGGGCTTC
1 CGGGCTTC
94037661 AGATCACGAT
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
38 28 0.38
39 45 0.62
ACGTcount: A:0.15, C:0.26, G:0.21, T:0.39
Consensus pattern (39 bp):
CGGGCTTCCATTTAGCACTTATGTGCTTCAGCTATACTT
Found at i:94039008 original size:31 final size:31
Alignment explanation
Indices: 94038970--94039088 Score: 143
Period size: 31 Copynumber: 3.8 Consensus size: 31
94038960 ACAAATGACA
* *
94038970 AGTGAAAAGTAGTAGCTTCGGCTACCTGGTC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
94039001 AGTGAAAAGTGGTAGC-TCTGGCTACCTGAT-
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
* *
94039031 AGATAAAAAGATGGTAGCTCCGGCTACCTGATC
1 AG-TGAAAAG-TGGTAGCTTCGGCTACCTGATC
* *
94039064 AGTGAATAGTGGTAGCTTCGTCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
94039089 AAGTGACAAG
Statistics
Matches: 75, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
30 4 0.05
31 45 0.60
32 23 0.31
33 3 0.04
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:94042402 original size:31 final size:31
Alignment explanation
Indices: 94042364--94042481 Score: 150
Period size: 31 Copynumber: 3.8 Consensus size: 31
94042354 ACAAATGACA
* *
94042364 AGTGAAAAGTAGTAGCTTCAGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATT
*
94042395 AGTGAAAAGTGGTAGCTCCGGCTACCTGA-T
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATT
* *
94042425 AGATAAAAAAATGGTAGC-TCGGCTACCTGATT
1 AG-T-GAAAAGTGGTAGCTTCGGCTACCTGATT
*
94042457 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
94042482 AAGTGACAAG
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
30 13 0.18
31 47 0.64
32 14 0.19
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATT
Found at i:94045838 original size:32 final size:31
Alignment explanation
Indices: 94045753--94045871 Score: 159
Period size: 31 Copynumber: 3.8 Consensus size: 31
94045743 ACAAATGACA
* *
94045753 AGTGAAAAGTAGTAGCTTCAGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATT
*
94045784 AGTGAAAAGTGGTAGCTCCGGCTACCTGA-T
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATT
* *
94045814 AGATAAAAAAATGGTAGCTTCGGCTACCTGATT
1 AG-T-GAAAAGTGGTAGCTTCGGCTACCTGATT
*
94045847 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
94045872 AAGTGACAAG
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
30 3 0.04
31 46 0.61
32 24 0.32
33 3 0.04
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATT
Found at i:94045961 original size:46 final size:47
Alignment explanation
Indices: 94045894--94045987 Score: 118
Period size: 46 Copynumber: 2.0 Consensus size: 47
94045884 ACAAGTGATT
*
94045894 TCCGTATAAGACCATATCTGGGATATGGCATC-AGTGTGATATGTGA
1 TCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGA
* * * * *
94045940 TCCGTGTAAGACCATGGCTGGGCTATGGCTTCGGTGTGTGATATGTGA
1 TCCGTATAAGACCATAGCTGGGATATGGCATC-GAGTGTGATATGTGA
94045988 CTATGTGCAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
46 27 0.68
48 13 0.32
ACGTcount: A:0.22, C:0.16, G:0.31, T:0.31
Consensus pattern (47 bp):
TCCGTATAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGA
Found at i:94046199 original size:20 final size:20
Alignment explanation
Indices: 94046145--94046215 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 20
94046135 AAGATGTATA
**
94046145 ACAGAGGCACCAAAATGTAG
1 ACAGAGGCACCAATGTGTAG
* * *
94046165 ACAAAGACACAAATGTGTAG
1 ACAGAGGCACCAATGTGTAG
* * *
94046185 TCAGAGGCACCAATGTGCAA
1 ACAGAGGCACCAATGTGTAG
*
94046205 ACAGGGGCACC
1 ACAGAGGCACC
94046216 GAAGTGCAAA
Statistics
Matches: 38, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.41, C:0.23, G:0.25, T:0.11
Consensus pattern (20 bp):
ACAGAGGCACCAATGTGTAG
Found at i:94047264 original size:15 final size:15
Alignment explanation
Indices: 94047244--94047280 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
94047234 AGATGATACC
*
94047244 TTATTTTTATTTTAT
1 TTATTTATATTTTAT
*
94047259 TTATTTATGTTTTAT
1 TTATTTATATTTTAT
94047274 TTATTTA
1 TTATTTA
94047281 ATTACAAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (15 bp):
TTATTTATATTTTAT
Found at i:94047276 original size:19 final size:19
Alignment explanation
Indices: 94047244--94047280 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
94047234 AGATGATACC
94047244 TTATTTTTATTTTATTTAT
1 TTATTTTTATTTTATTTAT
94047263 TTATGTTTTA-TTTATTTA
1 TTAT-TTTTATTTTATTTA
94047281 ATTACAAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (19 bp):
TTATTTTTATTTTATTTAT
Found at i:94052881 original size:27 final size:28
Alignment explanation
Indices: 94052847--94053051 Score: 183
Period size: 27 Copynumber: 7.5 Consensus size: 28
94052837 TAAATTGTAC
*
94052847 AGCACTAAGTGTGC-AATTCGACTATGT
1 AGCACTAAGTGTGCGAATTGGACTATGT
* *
94052874 TGCACTAAGTGTGCGAAATGGA-TATG-
1 AGCACTAAGTGTGCGAATTGGACTATGT
* *
94052900 ATGCACTAAGTGTGCGAATT-GACCATGC
1 A-GCACTAAGTGTGCGAATTGGACTATGT
*
94052928 GGCACTAAGTGTGCGAGA-TGGACTATGT
1 AGCACTAAGTGTGCGA-ATTGGACTATGT
* * * *
94052956 GGCACTAAGTGTGCG-ATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGGACTATGT
* * *
94052983 AGCACTAAGTGTGCG-ATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGGACTATGT
* * *
94053010 AGCACTAAGTGTGCGAGTT-GATTATAT
1 AGCACTAAGTGTGCGAATTGGACTATGT
*
94053037 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
94053052 GGCTCAATAA
Statistics
Matches: 153, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
26 3 0.02
27 121 0.79
28 29 0.19
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAATTGGACTATGT
Found at i:94052988 original size:82 final size:83
Alignment explanation
Indices: 94052846--94053051 Score: 210
Period size: 82 Copynumber: 2.5 Consensus size: 83
94052836 TTAAATTGTA
* *
94052846 CAGCACTAAGTGTGC-A-ATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAA
1 CAGCACTAAGTGTGCGAGATTCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAA
*
94052909 GTGTGCGAATTGACCATG
66 GTGTGCGAATTGACCACG
* * * *
94052927 CGGCACTAAGTGTGCGAGA-TGGACTATGTGGCACTAAGTGTGCG-ATTTGATTACG-TAGCACT
1 CAGCACTAAGTGTGCGAGATTCGACTATGTGGCACTAAGTGTGCGAAATGGA-TACGAT-GCACT
* **
94052989 AAGTGTGCGATTTGATTACG
64 AAGTGTGCGAATTGACCACG
* * * * *
94053009 TAGCACTAAGTGTGCGAG-TT-GATTATATAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCGAGATTCGACTATGTGGCACTAAGTGTGCG
94053052 GGCTCAATAA
Statistics
Matches: 104, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
81 38 0.37
82 65 0.62
83 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (83 bp):
CAGCACTAAGTGTGCGAGATTCGACTATGTGGCACTAAGTGTGCGAAATGGATACGATGCACTAA
GTGTGCGAATTGACCACG
Found at i:94053031 original size:54 final size:55
Alignment explanation
Indices: 94052847--94053051 Score: 202
Period size: 54 Copynumber: 3.8 Consensus size: 55
94052837 TAAATTGTAC
* * * *
94052847 AGCACTAAGTGTGC-AATTCGACTATGTTGCACTAAGTGTGCGAAATGGA-TATG-
1 AGCACTAAGTGTGCGAATT-GATTATGTAGCACTAAGTGTGCGAGATGGACTACGT
** ** *
94052900 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGT
1 A-GCACTAAGTGTGCGAATTGATTATGTAGCACTAAGTGTGCGAGATGGACTACGT
* * * * * *
94052956 GGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGA-TTTGATTACGT
1 AGCACTAAGTGTGCGAATTGATTATGTAGCACTAAGTGTGCGAGATGGACTACGT
* * *
94053010 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGATTATGTAGCACTAAGTGTGCG
94053052 GGCTCAATAA
Statistics
Matches: 128, Mismatches: 20, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
53 1 0.01
54 83 0.65
55 44 0.34
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGATTATGTAGCACTAAGTGTGCGAGATGGACTACGT
Found at i:94053042 original size:109 final size:109
Alignment explanation
Indices: 94052848--94053051 Score: 241
Period size: 109 Copynumber: 1.9 Consensus size: 109
94052838 AAATTGTACA
* * *
94052848 GCACTAAGTGTGCAATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAGTGT
1 GCACTAAGTGTGCAATTCGACTACGTAGCACTAAGTGTGCGAAATGGATACGATGCACTAAGTGT
* *
94052913 GCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
66 GCGAATTGACCATACAGCACTAAGTGTGCGAGATGGACTATGTG
* * * * *
94052957 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCG-ATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCAATTCGACTACGTAGCACTAAGTGTGCGAAATGGA-TACGAT-GCACTAAGT
* ** * *
94053020 GTGCGAGTTGATTATATAGCACTGAGTGTGCG
64 GTGCGAATTGACCATACAGCACTAAGTGTGCG
94053052 GGCTCAATAA
Statistics
Matches: 78, Mismatches: 15, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
108 5 0.06
109 73 0.94
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (109 bp):
GCACTAAGTGTGCAATTCGACTACGTAGCACTAAGTGTGCGAAATGGATACGATGCACTAAGTGT
GCGAATTGACCATACAGCACTAAGTGTGCGAGATGGACTATGTG
Found at i:94061034 original size:27 final size:26
Alignment explanation
Indices: 94061003--94061206 Score: 180
Period size: 27 Copynumber: 7.6 Consensus size: 26
94060993 TAAATTGTAC
94061003 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* *
94061030 TGCACTAAGTGTGCGAAATGGA-TATG-
1 AGCACTAAGTGTGCG--ATTGACTATGT
* *
94061056 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
* *
94061084 GGCACTAAGTGTGCGAGATGGACTATGT
1 AGCACTAAGTGTGC--GATTGACTATGT
* *
94061112 -GCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
94061138 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
94061165 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
94061192 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
94061207 GGCTCAATAA
Statistics
Matches: 152, Mismatches: 16, Indels: 18
0.82 0.09 0.10
Matches are distributed among these distances:
25 2 0.01
26 12 0.08
27 125 0.82
28 10 0.07
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:94061064 original size:54 final size:53
Alignment explanation
Indices: 94061004--94061206 Score: 212
Period size: 54 Copynumber: 3.8 Consensus size: 53
94060994 AAATTGTACA
*
94061004 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGA-TATGAT
1 GCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAAATGGACTATG-T
* ** *
94061058 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGT
1 GCACTAAGTGTGCG-ATTGACTATGTAGCACTAAGTGTGCGAAATGGACTATGT
* * * * * *
94061112 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCG-ATTTGATTACGT
1 GCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCGAAATGGACTATGT
* * *
94061165 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 -GCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCG
94061207 GGCTCAATAA
Statistics
Matches: 127, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
53 8 0.06
54 112 0.88
55 7 0.06
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (53 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGGACTATGT
Found at i:94061197 original size:81 final size:80
Alignment explanation
Indices: 94061002--94061206 Score: 218
Period size: 81 Copynumber: 2.5 Consensus size: 80
94060992 TTAAATTGTA
*
94061002 CAGCACTAAGTGTGCGA-TTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAAG
1 CAGCACTAAGTGTGCGAGTT-GACTATG-TGCACTAAGTGTGCGAAATGGATACGATGCACTAAG
*
94061066 TGTGCGAATTGACCATG
64 TGTGCGAATTGACCACG
* * * *
94061083 CGGCACTAAGTGTGCGAGATGGACTATGTGCACTAAGTGTGCG-ATTTGATTACG-TAGCACTAA
1 CAGCACTAAGTGTGCGAG-TTGACTATGTGCACTAAGTGTGCGAAATGGA-TACGAT-GCACTAA
* **
94061146 GTGTGCGATTTGATTACG
63 GTGTGCGAATTGACCACG
* * * *
94061164 TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCGAGTTGACTATGT-GCACTAAGTGTGCG
94061207 GGCTCAATAA
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
80 12 0.12
81 84 0.81
82 7 0.07
83 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (80 bp):
CAGCACTAAGTGTGCGAGTTGACTATGTGCACTAAGTGTGCGAAATGGATACGATGCACTAAGTG
TGCGAATTGACCACG
Found at i:94072248 original size:44 final size:44
Alignment explanation
Indices: 94072189--94072344 Score: 135
Period size: 42 Copynumber: 3.6 Consensus size: 44
94072179 TGTGATTTTG
* * *
94072189 TGTAAGACTACGTTTGGGACGTTGGCATCGGT-TTGAGATTTACA
1 TGTAAGACCATGTTTGGGACGTTGGCATCGGTATT-TGATTTACA
* * * * *
94072233 TGTAAGACCATGTTTGGGACATCGACATC-GTATTTG-TTTTCG
1 TGTAAGACCATGTTTGGGACGTTGGCATCGGTATTTGATTTACA
* *
94072275 TGTAAGACCCTGTTTGGGACAG-TGGCATCGATATTTGA-TTACA
1 TGTAAGACCATGTTTGGGAC-GTTGGCATCGGTATTTGATTTACA
* * *
94072318 TGTAATACCAAGTCTGGG-CGTTGGCAT
1 TGTAAGACCATGTTTGGGACGTTGGCAT
94072345 TGTACGAGCT
Statistics
Matches: 88, Mismatches: 19, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
41 1 0.01
42 35 0.40
43 26 0.30
44 26 0.30
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (44 bp):
TGTAAGACCATGTTTGGGACGTTGGCATCGGTATTTGATTTACA
Found at i:94083609 original size:54 final size:54
Alignment explanation
Indices: 94083180--94083603 Score: 546
Period size: 54 Copynumber: 7.9 Consensus size: 54
94083170 TTTCCTTTTT
* * * * * *
94083180 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* * * ** *
94083233 GAACTCACCAATGCCATGCCTTAGCATGGTCTTACATGGGA-CCTTTGCCTTACA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTATA
* * * *
94083287 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* *
94083342 GAACTTATCAATGCCACGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* *
94083396 GAACTTATCAATGCCCTGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* * * *
94083450 GAATTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCCTATT
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* * * **
94083504 TAACTTATCAATGCCATGCCTTGGCATGGTCTTAGATGATATCCATATCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
*
94083558 GAACTTATCAATGCCATGCCTTGTCATGGTCTTACATGATATCCTT
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
94083604 ATCTTACCAA
Statistics
Matches: 328, Mismatches: 39, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
52 2 0.01
53 42 0.13
54 239 0.73
55 43 0.13
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
Found at i:94084462 original size:30 final size:31
Alignment explanation
Indices: 94084419--94084476 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 31
94084409 CTAACTCAAA
94084419 CTTTGACAAAATTACAATTTTACCCCTAAAC
1 CTTTGACAAAATTACAATTTTACCCCTAAAC
* ** *
94084450 CTTTG-CAGAATTATGATTTTGCCCCTA
1 CTTTGACAAAATTACAATTTTACCCCTA
94084477 GGCACAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 18 0.78
31 5 0.22
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (31 bp):
CTTTGACAAAATTACAATTTTACCCCTAAAC
Found at i:94086558 original size:17 final size:18
Alignment explanation
Indices: 94086526--94086559 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
94086516 CCATAATGCG
94086526 TGCCCATGTGGGCCCACA
1 TGCCCATGTGGGCCCACA
*
94086544 TGCCCGTGT-GGCCCAC
1 TGCCCATGTGGGCCCAC
94086560 TTAGCCCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.12, C:0.41, G:0.29, T:0.18
Consensus pattern (18 bp):
TGCCCATGTGGGCCCACA
Found at i:94089398 original size:27 final size:26
Alignment explanation
Indices: 94089358--94089439 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 26
94089348 AGCTGTCAGA
*
94089358 AACAGTAAATGTGGCAAAGCCACCAGT
1 AACAGT-AATGTGGCATAGCCACCAGT
*
94089385 ATCAGTAATTGTGGCATAGCCACCAGT
1 AACAGTAA-TGTGGCATAGCCACCAGT
* *
94089412 AACAGTGAATGTGACATAGTCACCAGT
1 AACAGT-AATGTGGCATAGCCACCAGT
94089439 A
1 A
94089440 CTGTAACGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 2 0.04
27 44 0.92
28 2 0.04
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (26 bp):
AACAGTAATGTGGCATAGCCACCAGT
Found at i:94090725 original size:46 final size:46
Alignment explanation
Indices: 94090550--94090725 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
94090540 TGTAACCCGC
* * *
94090550 CCATAAGCGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * * *
94090596 CCATAAGTGAAATCGGACTCAACTCAATGAGCTT-GGATGCCTCGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGACG-TTCG---CAT
* * *
94090646 -C-TCA-CGAACTCAGACTCAACCCAACGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
94090689 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
94090726 TGCCCAAATA
Statistics
Matches: 100, Mismatches: 21, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 61 0.61
47 27 0.27
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:94092192 original size:27 final size:27
Alignment explanation
Indices: 94092142--94092232 Score: 128
Period size: 27 Copynumber: 3.4 Consensus size: 27
94092132 GGTATAATCG
** *
94092142 TCATTTTACCAAACAAGGGTATTACGA
1 TCATTTTACCCTACAGGGGTATTACGA
* *
94092169 TCATTTTACCCTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGA
*
94092196 TCATTTTACCCTACAGTGGTATTACGA
1 TCATTTTACCCTACAGGGGTATTACGA
94092223 TCATTTTACC
1 TCATTTTACC
94092233 TATTTTGGGG
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.34
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACGA
Found at i:94095110 original size:49 final size:50
Alignment explanation
Indices: 94095033--94095176 Score: 184
Period size: 51 Copynumber: 2.9 Consensus size: 50
94095023 TATTGTGAGG
* * * *
94095033 TCACGTGTGTAGTACTAAATGCAGGCTACTATGTGTACCGGATAA-T-TGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-GATAACTGTGA
* *
94095082 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGAAAACTGTGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-CGATAACTGTGA
*
94095133 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-GATA
94095177 GCTTCGGCTA
Statistics
Matches: 82, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
49 38 0.46
50 3 0.04
51 41 0.50
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGATAACTGTGA
Found at i:94095151 original size:51 final size:49
Alignment explanation
Indices: 94095033--94095171 Score: 190
Period size: 49 Copynumber: 2.8 Consensus size: 49
94095023 TATTGTGAGG
* * * *
94095033 TCACGTGTGTAGTACTAAATGCAGGCTACTATGTGTACCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGAAAATTGA
* *
94095082 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GAAAACTGTGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-CGGAAAA-T-TGA
94095133 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
94095172 AGATAGCTTC
Statistics
Matches: 79, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
49 38 0.48
50 3 0.04
51 38 0.48
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGAAAATTGA
Found at i:94098965 original size:33 final size:33
Alignment explanation
Indices: 94098919--94099017 Score: 171
Period size: 33 Copynumber: 3.0 Consensus size: 33
94098909 TATATAACAC
94098919 AGTCTGGGCTTTAGCCCTATACAGTATCAGTAT
1 AGTCTGGGCTTTAGCCCTATACAGTATCAGTAT
* *
94098952 AGTTTGGGCTTTAGCCCTATACAGTATCAGTAC
1 AGTCTGGGCTTTAGCCCTATACAGTATCAGTAT
*
94098985 AGTCTGGGCTTTAGCCCTATACAGTAACAGTAT
1 AGTCTGGGCTTTAGCCCTATACAGTATCAGTAT
94099018 GGGCCTAAGC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 61 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32
Consensus pattern (33 bp):
AGTCTGGGCTTTAGCCCTATACAGTATCAGTAT
Found at i:94099257 original size:27 final size:27
Alignment explanation
Indices: 94099178--94099276 Score: 83
Period size: 27 Copynumber: 3.7 Consensus size: 27
94099168 TAGTAATAAT
* *
94099178 AATGTAGCATAGCCGCCAGA-AATAGTA
1 AATGTGGCATAGCCACCA-ATAATAGTA
* * * *
94099205 AATGTGGCAAAGCCACTAGTATTAGTA
1 AATGTGGCATAGCCACCAATAATAGTA
** *
94099232 GTTGTGGCATAGCCACCAATAATAGTG
1 AATGTGGCATAGCCACCAATAATAGTA
* *
94099259 AATGTGACATAGTCACCA
1 AATGTGGCATAGCCACCA
94099277 GTACAATACT
Statistics
Matches: 54, Mismatches: 17, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.23
Consensus pattern (27 bp):
AATGTGGCATAGCCACCAATAATAGTA
Found at i:94099506 original size:26 final size:26
Alignment explanation
Indices: 94099421--94099510 Score: 108
Period size: 27 Copynumber: 3.4 Consensus size: 26
94099411 GGCATAATCT
**
94099421 TCATTTTACCAAACATGGGTATTACGG
1 TCATTTTACCCTACA-GGGTATTACGG
* *
94099448 TCATTTTACCCTATCGGGGCATTACGG
1 TCATTTTACCCTA-CAGGGTATTACGG
* *
94099475 TTATTTTACCCTACAGGGTATTACGC
1 TCATTTTACCCTACAGGGTATTACGG
94099501 TCATTTTACC
1 TCATTTTACC
94099511 TATTTTGGGG
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
26 19 0.36
27 33 0.62
28 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (26 bp):
TCATTTTACCCTACAGGGTATTACGG
Found at i:94099778 original size:18 final size:17
Alignment explanation
Indices: 94099730--94099780 Score: 93
Period size: 17 Copynumber: 2.9 Consensus size: 17
94099720 ATCTATGCGA
94099730 GGCCCACGAGCCCATTG
1 GGCCCACGAGCCCATTG
94099747 GGCCCACGAGCCCATTG
1 GGCCCACGAGCCCATTG
94099764 GGCCCACGTAGCCCATT
1 GGCCCACG-AGCCCATT
94099781 TCGGCCGAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 25 0.76
18 8 0.24
ACGTcount: A:0.18, C:0.41, G:0.27, T:0.14
Consensus pattern (17 bp):
GGCCCACGAGCCCATTG
Found at i:94110115 original size:17 final size:17
Alignment explanation
Indices: 94110093--94110138 Score: 83
Period size: 17 Copynumber: 2.7 Consensus size: 17
94110083 AATAGGCTGT
94110093 GTGGGCCCCACAAACTC
1 GTGGGCCCCACAAACTC
*
94110110 GTGGGCCTCACAAACTC
1 GTGGGCCCCACAAACTC
94110127 GTGGGCCCCACA
1 GTGGGCCCCACA
94110139 CGGGTAAACC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.22, C:0.39, G:0.26, T:0.13
Consensus pattern (17 bp):
GTGGGCCCCACAAACTC
Found at i:94113644 original size:26 final size:25
Alignment explanation
Indices: 94113588--94113663 Score: 73
Period size: 26 Copynumber: 3.0 Consensus size: 25
94113578 ACATATTCTG
* *
94113588 TTACTGGCAGTTTTGCTGCGTTACTGA
1 TTACTGGCAG-TTTGCTGCGATA-TTA
*
94113615 -TACTAGCAGCTTTGCTGCGATATTA
1 TTACTGGCAG-TTTGCTGCGATATTA
* *
94113640 TTACTGGCAGTTTACTGTGATATT
1 TTACTGGCAGTTTGCTGCGATATT
94113664 GGTTTATTGG
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
25 14 0.34
26 27 0.66
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.41
Consensus pattern (25 bp):
TTACTGGCAGTTTGCTGCGATATTA
Found at i:94115826 original size:24 final size:24
Alignment explanation
Indices: 94115776--94115827 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
94115766 GTGTTTTGTT
* *
94115776 GAGAAAATCAAGGAGAGGATTGGG
1 GAGAAAAGCAAGGAGAGGATTAGG
* *
94115800 GAGAAAAGCAAGGAGATGATTATG
1 GAGAAAAGCAAGGAGAGGATTAGG
94115824 GAGA
1 GAGA
94115828 GTTTTTAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.44, C:0.04, G:0.38, T:0.13
Consensus pattern (24 bp):
GAGAAAAGCAAGGAGAGGATTAGG
Found at i:94120050 original size:39 final size:39
Alignment explanation
Indices: 94119996--94120175 Score: 281
Period size: 39 Copynumber: 4.6 Consensus size: 39
94119986 TATACATATA
94119996 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
**
94120035 TGCTTCAGTTAGCCTTCGGGCTTTTGTTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
*
94120074 TGCTTCAGTTAGCC-TCTGGGCTTCCATTTAGCACTTATG
1 TGCTTCAGTTAGCCTTC-GGGCTTCCGTTTAGCACTTATG
94120113 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
* * **
94120152 TGCTTCGGCTAGATTTCGGGCTTC
1 TGCTTCAGTTAGCCTTCGGGCTTC
94120176 AGATGACGAT
Statistics
Matches: 129, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 2 0.02
39 125 0.97
40 2 0.02
ACGTcount: A:0.13, C:0.24, G:0.23, T:0.39
Consensus pattern (39 bp):
TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
Found at i:94121525 original size:31 final size:31
Alignment explanation
Indices: 94121487--94121604 Score: 150
Period size: 31 Copynumber: 3.8 Consensus size: 31
94121477 ATAAATGACA
**
94121487 AGTGAAAAGCAGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
94121518 AGTGAAAAGTGGTAGCTCCGGCTACCTGAT-
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
94121548 AGATAAAAAATGGTAGC-TCTGGCTACCTGATC
1 AG-TGAAAAGTGGTAGCTTC-GGCTACCTGATC
*
94121580 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
94121605 AAGTGACAAG
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
30 3 0.04
31 67 0.91
32 4 0.05
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:94121700 original size:46 final size:46
Alignment explanation
Indices: 94121633--94121725 Score: 116
Period size: 46 Copynumber: 2.0 Consensus size: 46
94121623 GATTTCCGTA
*
94121633 TAAGACCATATCTGGGATATGGCATC-AGTGTGATATGTGACCTATG
1 TAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGA-CTATG
* * * *
94121679 TAAGACCATGGCTGGGCTATGGCTTCGGTGTGTGATATGTGACTATG
1 TAAGACCATAGCTGGGATATGGCATC-GAGTGTGATATGTGACTATG
94121726 CGCAAGACCA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
46 22 0.55
47 5 0.12
48 13 0.32
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (46 bp):
TAAGACCATAGCTGGGATATGGCATCGAGTGTGATATGTGACTATG
Found at i:94123575 original size:39 final size:39
Alignment explanation
Indices: 94123516--94123695 Score: 272
Period size: 39 Copynumber: 4.6 Consensus size: 39
94123506 TATACATATA
*
94123516 TGCTTCAGTTAGCCTCCGGGCTTCCATTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
*
94123555 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
94123594 TGCTTCAGTTAGCC-TCTGGGCTTCCATTTAGCACTTATG
1 TGCTTCAGTTAGCCTTC-GGGCTTCCATTTAGCACTTATG
* *
94123633 TGCTTCAGTTAGCCTTCAGACTTCCATTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
* * **
94123672 TGCTTTAGCTAGATTTCGGGCTTC
1 TGCTTCAGTTAGCCTTCGGGCTTC
94123696 AGATCACGAT
Statistics
Matches: 128, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
38 2 0.02
39 124 0.97
40 2 0.02
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.38
Consensus pattern (39 bp):
TGCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATG
Found at i:94124984 original size:31 final size:31
Alignment explanation
Indices: 94124946--94125064 Score: 123
Period size: 31 Copynumber: 3.8 Consensus size: 31
94124936 ACAAATGACA
* *
94124946 AGTGAAAAGCAGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTAGTAGCTCCGGCTACCTGATC
* *
94124977 AGTGAAAAGTGGTAGCTCCGGCTACCTAAT-
1 AGTGAAAAGTAGTAGCTCCGGCTACCTGATC
* * *
94125007 AGATAAAAAAATGGTAGCTCCGGCTACCTGATC
1 AG-T-GAAAAGTAGTAGCTCCGGCTACCTGATC
* * *
94125040 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTAGTAGCTCCGGCTAC
94125065 AAGTGACAAG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
30 2 0.03
31 45 0.61
32 25 0.34
33 2 0.03
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (31 bp):
AGTGAAAAGTAGTAGCTCCGGCTACCTGATC
Found at i:94127035 original size:39 final size:39
Alignment explanation
Indices: 94126976--94127155 Score: 263
Period size: 39 Copynumber: 4.6 Consensus size: 39
94126966 TATACATATA
*
94126976 TGCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
94127015 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
* * *
94127054 TGCTTCTGTTAGCC-TCTGGGCGTCCATTTAGCACTTATG
1 TGCTTCAGTTAGCCTTC-GGGCTTCCGTTTAGCACTTATG
**
94127093 CACTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
1 TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
* **
94127132 TGCTTCAGCTAGATTTCGGGCTTC
1 TGCTTCAGTTAGCCTTCGGGCTTC
94127156 AGATCACGAT
Statistics
Matches: 125, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
38 2 0.02
39 121 0.97
40 2 0.02
ACGTcount: A:0.13, C:0.27, G:0.23, T:0.37
Consensus pattern (39 bp):
TGCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATG
Found at i:94128575 original size:46 final size:46
Alignment explanation
Indices: 94128519--94128694 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
94128509 TATTTGGGCA
* *
94128519 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAGGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
94128565 TCTGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
94128612 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
94128658 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94128695 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 63 0.58
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:94128674 original size:93 final size:93
Alignment explanation
Indices: 94128515--94128687 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
94128505 GGGATATTTG
* * * *
94128515 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAGGCAAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGAGGCAAACGCCCGAACTCGTTGAG
94128580 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
* * *
94128608 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGAGGCAAACGCCCGAACTCGTTGAG
*
94128673 TTGAGTCTGAGTTCA
66 TTGAGTCCGAGTTCA
94128688 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGAGGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:94130556 original size:15 final size:15
Alignment explanation
Indices: 94130536--94130567 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
94130526 CAAATCCTGC
*
94130536 AATGCCGAAAGTCGA
1 AATGCCGAAAGCCGA
94130551 AATGCCGAAAGCCGA
1 AATGCCGAAAGCCGA
94130566 AA
1 AA
94130568 AGTAATTCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.22, G:0.25, T:0.09
Consensus pattern (15 bp):
AATGCCGAAAGCCGA
Found at i:94130738 original size:29 final size:28
Alignment explanation
Indices: 94130705--94130766 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
94130695 GAAAGCATGA
* *
94130705 ATATGAAAGTGATTTGGGCCTAATGGGCC
1 ATATGAAAGAGA-ATGGGCCTAATGGGCC
* *
94130734 ATATGAATGAGAATGGGCCTAGTGGGCC
1 ATATGAAAGAGAATGGGCCTAATGGGCC
94130762 ATATG
1 ATATG
94130767 CATGTATGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 19 0.66
29 10 0.34
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.26
Consensus pattern (28 bp):
ATATGAAAGAGAATGGGCCTAATGGGCC
Found at i:94135064 original size:20 final size:21
Alignment explanation
Indices: 94135027--94135077 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
94135017 CAAAGACACA
**
94135027 AATGTGCAGTCAGAGGCACC-
1 AATGTGCAAACAGAGGCACCG
*
94135047 AATGTGCAAACAGGGGCACCG
1 AATGTGCAAACAGAGGCACCG
94135068 AA-GTGCAAAC
1 AATGTGCAAAC
94135078 TCGTACAAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 25 0.93
21 2 0.07
ACGTcount: A:0.35, C:0.24, G:0.29, T:0.12
Consensus pattern (21 bp):
AATGTGCAAACAGAGGCACCG
Found at i:94136106 original size:15 final size:15
Alignment explanation
Indices: 94136086--94136122 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
94136076 AGATGATACC
*
94136086 TTATTTTTATTTTAT
1 TTATTTATATTTTAT
*
94136101 TTATTTATGTTTTAT
1 TTATTTATATTTTAT
94136116 TTATTTA
1 TTATTTA
94136123 ATTACAAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (15 bp):
TTATTTATATTTTAT
Found at i:94136118 original size:19 final size:19
Alignment explanation
Indices: 94136086--94136122 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
94136076 AGATGATACC
94136086 TTATTTTTATTTTATTTAT
1 TTATTTTTATTTTATTTAT
94136105 TTATGTTTTA-TTTATTTA
1 TTAT-TTTTATTTTATTTA
94136123 ATTACAAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (19 bp):
TTATTTTTATTTTATTTAT
Found at i:94140264 original size:488 final size:497
Alignment explanation
Indices: 94139291--94140579 Score: 1805
Period size: 488 Copynumber: 2.6 Consensus size: 497
94139281 GGCTACTATG
* * * * *
94139291 TTGCAACATAGGGGACGTTTCATGCCATAAAAGTCATTTTGTGGGCTTGGAAGTTCTTATCGTGC
1 TTGCAACATAGGGGGCGTGTCACGCCATAGAAGTCATTTTGTGGGCTTGGAAGTTCTTATCATGC
* * *
94139356 TTTTATGGCGTGTGAAGCTTGTGCAACACTCATCCCACATTCCTACATCAATTGGGCCTAGAATT
66 TTTTATGGCATGAGAAGCTTGTACAACACTCATCCCACATTCCTACATCAATTGGGCCTAGAATT
* ** *
94139421 AAGCATCTTGTACACTAAAATACACAAATTAAACCTAATTATGGTCCGTGTCTGCCTAATAGGTC
131 AAGCATCTTGTACACTTAAATACACAAATTAAACCTACCTATGGTCTGTGTCTGCCTAATAGGTC
* * *
94139486 ACTAATACTAAAAAATGTGTCATATCATGACCCTTCCATGTCGCAACATCAGACTCTAATGTTGC
196 ACTAACACTAAAAAATGTGTCATATCATGACCCTTCGATGTCGCAACATCGGACTCTAATGTTGC
* *
94139551 AACACTGTAGGCTTGTGTTGCAACCAACCCCCTGCATAGCCCAAAAACCCTGTGTACAGAGACCT
261 AACACTGTAGGCCTGTGTTGCAACCAACCCCTTGCATAGCCCAAAAACCCTGTGTACAGAGACCT
*
94139616 CTTATTTATAGGCTAAAATATGTGCACTTTATGCCTGATATGCCCCCGATACTAATAAATGTGAA
326 CTTATTTATAGGCTAAAATATGTGCACTTTATCCCTGATATGCCCCCGATACTAATAAATGTGAA
*
94139681 ATATCAAATGATATCATAAAATCTTTTCAAACACGACCACTGACGTCATTATTACTTGTGACTCA
391 ATATCAAATGATATCATAAAATCTTTTCAAACACGACCACTGACGTCATTATTACTTATGACTCA
*
94139746 TGTTCAGGCTACGTTTCAACATAGGAGATG-CT-AC-A-T-C
456 TGTTCAGGCTACGTCTCAACATAGGAGATGACTAACAAGTGC
* * * *
94139783 -T-CAACATAGGGGGCGTGTCACGCCGTAGAAGTCATTTTGTGGGGTTGGAAGTTCCTGTCATGC
1 TTGCAACATAGGGGGCGTGTCACGCCATAGAAGTCATTTTGTGGGCTTGGAAGTTCTTATCATGC
*
94139846 TTTTATGGCATG-GAAGCTTGTACAACACTC-TCCCATATTCCTACATCAATTGGGCCTAGAATT
66 TTTTATGGCATGAGAAGCTTGTACAACACTCATCCCACATTCCTACATCAATTGGGCCTAGAATT
*
94139909 AAGCATCTTGTACACTTAAATACACAAATTAAGCCTACCTATGGTCTGTGTCTGCCTAATAGGTC
131 AAGCATCTTGTACACTTAAATACACAAATTAAACCTACCTATGGTCTGTGTCTGCCTAATAGGTC
* * * * * **
94139974 ACTGACACTAAAAAATGTGTCATATCATGACCTTTTGATGTTGCGACATCGGACTCGGATGTTGC
196 ACTAACACTAAAAAATGTGTCATATCATGACCCTTCGATGTCGCAACATCGGACTCTAATGTTGC
* * *
94140039 AACACTGCAGGCCTATGTTGCAACCAACCCCTTGCATAGCCCAAAAGCCCCTTGTGTACAGAGAC
261 AACACTGTAGGCCTGTGTTGCAACCAACCCCTTGCATAGCCCAAAA-ACCC-TGTGTACAGAGAC
* * * * *
94140104 CTTTTATTTATAGGGTAGAATATGTGCACTTTATCCCTTATATGCCCCCGATACTAGTAAATGTG
324 CTCTTATTTATAGGCTAAAATATGTGCACTTTATCCCTGATATGCCCCCGATACTAATAAATGTG
94140169 AAATATCAAATGATATCATAAAATCTTTTCAAACACGACCACTGAC-TCATTATTACTTATGACT
389 AAATATCAAATGATATCATAAAATCTTTTCAAACACGACCACTGACGTCATTATTACTTATGACT
94140233 CATGTTCAGGCTACGTCTCAACATA-GAGATGCTACACTCAACATAGGGCTGC
454 CATGTTCAGGCTACGTCTCAACATAGGAGATG----ACT-AACA-A--G-TGC
* * * *
94140285 TATGTTGCAACATAGGGAGCGTGTCACACCATAGAAGTCATTTTGTGGACTTGAAAGTTCTTATC
1 ----TTGCAACATAGGGGGCGTGTCACGCCATAGAAGTCATTTTGTGGGCTTGGAAGTTCTTATC
* * * * *
94140350 ATGCTTGTAT-GCATGAGAAGCTTGTACAACACTCGTCCCACATTCCTACATTAGTTGGGCCTAA
62 ATGCTTTTATGGCATGAGAAGCTTGTACAACACTCATCCCACATTCCTACATCAATTGGGCCTAG
* * ** *
94140414 AATTAAGTATCTTGCACACTTAAATACACAAATTAAACCTACCTAAAGTCCT-TGTCTTCCTAAT
127 AATTAAGCATCTTGTACACTTAAATACACAAATTAAACCTACCTATGGT-CTGTGTCTGCCTAAT
* * *
94140478 AGGTCACTAACACCAAAAAATGTAG-GATATCATGACCCTTCGATGTCGCAACATTGGACTCTAA
191 AGGTCACTAACACTAAAAAATGT-GTCATATCATGACCCTTCGATGTCGCAACATCGGACTCTAA
94140542 TGTTGCAACACTGTAGGCCTGTGTTGCAACCAACCCCT
255 TGTTGCAACACTGTAGGCCTGTGTTGCAACCAACCCCT
94140580 CGTAGCTTAA
Statistics
Matches: 700, Mismatches: 71, Indels: 35
0.87 0.09 0.04
Matches are distributed among these distances:
488 195 0.28
489 61 0.09
490 182 0.26
491 1 0.00
493 2 0.00
495 2 0.00
497 1 0.00
501 1 0.00
502 1 0.00
507 6 0.01
508 77 0.11
509 168 0.24
510 3 0.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (497 bp):
TTGCAACATAGGGGGCGTGTCACGCCATAGAAGTCATTTTGTGGGCTTGGAAGTTCTTATCATGC
TTTTATGGCATGAGAAGCTTGTACAACACTCATCCCACATTCCTACATCAATTGGGCCTAGAATT
AAGCATCTTGTACACTTAAATACACAAATTAAACCTACCTATGGTCTGTGTCTGCCTAATAGGTC
ACTAACACTAAAAAATGTGTCATATCATGACCCTTCGATGTCGCAACATCGGACTCTAATGTTGC
AACACTGTAGGCCTGTGTTGCAACCAACCCCTTGCATAGCCCAAAAACCCTGTGTACAGAGACCT
CTTATTTATAGGCTAAAATATGTGCACTTTATCCCTGATATGCCCCCGATACTAATAAATGTGAA
ATATCAAATGATATCATAAAATCTTTTCAAACACGACCACTGACGTCATTATTACTTATGACTCA
TGTTCAGGCTACGTCTCAACATAGGAGATGACTAACAAGTGC
Found at i:94144772 original size:47 final size:47
Alignment explanation
Indices: 94144660--94144788 Score: 197
Period size: 47 Copynumber: 2.7 Consensus size: 47
94144650 TCGAGTGATG
* *
94144660 CCTTGATTTGGCTACGGGCCATGGTATAGGTATTTCAGTGAAGAGTTA
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTA-CTCAGGGAAGAGTTA
*
94144708 CCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGGATA-AGTTA
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGGGA-AGAGTTA
*
94144755 CCTTGATTTGGCTACGGGCCATGGTATAAGTACT
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTACT
94144789 TATCGATTGA
Statistics
Matches: 76, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
47 43 0.57
48 33 0.43
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.32
Consensus pattern (47 bp):
CCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGGGAAGAGTTA
Found at i:94149569 original size:41 final size:43
Alignment explanation
Indices: 94149494--94149592 Score: 132
Period size: 42 Copynumber: 2.3 Consensus size: 43
94149484 GGTTTGAGAT
*
94149494 TTACATGTAAGACCATGTTTGGGACATCGACATCG-TATTTGT
1 TTACATGTAAGACCATGTTTGGGACATCGACATCGATATTTGA
* * *
94149536 TTTCGTGTAAGACCAT-TTTGGGACAGT-GGCATCGATATTTGA
1 TTACATGTAAGACCATGTTTGGGACA-TCGACATCGATATTTGA
94149578 TTACATGTAAGACCA
1 TTACATGTAAGACCA
94149593 AGTCTGGGGC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
41 15 0.31
42 34 0.69
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.34
Consensus pattern (43 bp):
TTACATGTAAGACCATGTTTGGGACATCGACATCGATATTTGA
Found at i:94158708 original size:46 final size:46
Alignment explanation
Indices: 94158658--94158830 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
94158648 TGGTTGAGCA
*
94158658 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
94158704 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * * * *
94158751 TTCAAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
94158797 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
94158831 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:94161977 original size:40 final size:40
Alignment explanation
Indices: 94161932--94162123 Score: 217
Period size: 40 Copynumber: 4.8 Consensus size: 40
94161922 ATAACCACAA
* * *
94161932 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
94161972 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
94162012 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
94162052 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * *
94162092 GGATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
94162124 CATTCAAATG
Statistics
Matches: 141, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 136 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:94166791 original size:54 final size:54
Alignment explanation
Indices: 94166594--94167016 Score: 492
Period size: 54 Copynumber: 7.9 Consensus size: 54
94166584 TTTCCTTTTT
* * * * * * *
94166594 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* * * * ***
94166647 GAACTCACCAATGCCATGCCTTAGCAAGGTCTTACATG-GGACCTTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCC-TTGCCTTATA
* * * * *
94166701 GTAACTCATCAATGTCATGTCTTGACATGGTATTACATGATTTCCTTGCCTTATA
1 G-AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
*
94166756 GAACTTATCAATGCCACGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* *
94166810 GAACTTATCAATGCCCTGCCGTGGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* * * *
94166864 GAATTTATCAATGCCATGCCCTGGCATGGTCTTACATGATTTCCTTGCCCTATT
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* * * * * **
94166918 TAACTTATCAATGTCATGCCTTGG-ATGGTCTTAGATGATATCCATATCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* *
94166971 GAACTTATCAATGCCATGCCTTGTCATGGTCTTACATGATATCCTT
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTT
94167017 ATCTTACCAA
Statistics
Matches: 315, Mismatches: 50, Indels: 9
0.84 0.13 0.02
Matches are distributed among these distances:
52 2 0.01
53 83 0.26
54 187 0.59
55 41 0.13
56 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
Found at i:94166806 original size:29 final size:29
Alignment explanation
Indices: 94166773--94166860 Score: 71
Period size: 29 Copynumber: 3.2 Consensus size: 29
94166763 TCAATGCCAC
94166773 GCCTTGGCATGGTCTTACATGATTTCCTT
1 GCCTTGGCATGGTCTTACATGATTTCCTT
** * *
94166802 GCCTT---ATAGAACTTATCA--A-TGCCCT
1 GCCTTGGCAT-GGTCTTA-CATGATTTCCTT
*
94166827 GCCGTGGCATGGTCTTACATGATTTCCTT
1 GCCTTGGCATGGTCTTACATGATTTCCTT
94166856 GCCTT
1 GCCTT
94166861 ATAGAATTTA
Statistics
Matches: 41, Mismatches: 10, Indels: 16
0.61 0.15 0.24
Matches are distributed among these distances:
25 8 0.20
26 5 0.12
27 10 0.24
28 5 0.12
29 13 0.32
ACGTcount: A:0.17, C:0.26, G:0.19, T:0.38
Consensus pattern (29 bp):
GCCTTGGCATGGTCTTACATGATTTCCTT
Found at i:94169959 original size:17 final size:18
Alignment explanation
Indices: 94169927--94169960 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
94169917 CCATAATGCG
94169927 TGCCCATGTGGGCCCACA
1 TGCCCATGTGGGCCCACA
*
94169945 TGCCCGTGT-GGCCCAC
1 TGCCCATGTGGGCCCAC
94169961 TTAGCGCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.12, C:0.41, G:0.29, T:0.18
Consensus pattern (18 bp):
TGCCCATGTGGGCCCACA
Found at i:94172656 original size:28 final size:28
Alignment explanation
Indices: 94172602--94172663 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
94172592 CAGTATCGGT
* *
94172602 ACAGTCTGGGCCTTAGCCCTATACAGTA
1 ACAGTATGGGCCTAAGCCCTATACAGTA
*
94172630 ACAGTATGGGCCTAAGCTCC-ATGCAGTA
1 ACAGTATGGGCCTAAGC-CCTATACAGTA
*
94172658 TCAGTA
1 ACAGTA
94172664 CAGTGTAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 27 0.93
29 2 0.07
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (28 bp):
ACAGTATGGGCCTAAGCCCTATACAGTA
Found at i:94172857 original size:27 final size:26
Alignment explanation
Indices: 94172817--94172906 Score: 101
Period size: 27 Copynumber: 3.4 Consensus size: 26
94172807 AGCTGTCAGA
*
94172817 AACAGTAAATGTGGCAAAGCCACCAGT
1 AACAGT-AATGTGGCATAGCCACCAGT
*
94172844 ATCAGTAATTGTGGCATAGCCACCAGT
1 AACAGTAA-TGTGGCATAGCCACCAGT
* *
94172871 AACAGTGAATGTGACATAGTCACCAGT
1 AACAGT-AATGTGGCATAGCCACCAGT
*
94172898 -ACTGTAATG
1 AACAGTAATG
94172907 CCCTCGTACC
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
25 4 0.07
26 6 0.11
27 43 0.78
28 2 0.04
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
AACAGTAATGTGGCATAGCCACCAGT
Found at i:94174174 original size:93 final size:93
Alignment explanation
Indices: 94174015--94174187 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
94174005 CGCCCATAAG
* * * * * *
94174015 CGAACTTAGACTCAACTCTATGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACCCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
94174080 ACGAGCTCGGATGCCTCGTTACATCTCA
66 ACGAGCTCGGATGCCTCGTTACATCTCA
*
94174108 CGAACTCAGACTCAACCCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACCCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
94174173 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
94174188 CAAATATCCG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACCCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTCGTTACATCTCA
Found at i:94174183 original size:46 final size:46
Alignment explanation
Indices: 94174008--94174183 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
94173998 TGTAACCCGC
* * * * *
94174008 CCATAAGCGAACTTAGACTCAACTCTATGAGCTCGGGCGTTCGTAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * * *
94174054 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTCGTTACAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGACG-TTCG---CAT
* * *
94174104 -C-TCA-CGAACTCAGACTCAACCCAACGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * *
94174147 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGA
94174184 TGCCCAAATA
Statistics
Matches: 103, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 62 0.60
47 30 0.29
48 2 0.02
49 1 0.01
50 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:94175651 original size:27 final size:26
Alignment explanation
Indices: 94175601--94175691 Score: 101
Period size: 27 Copynumber: 3.4 Consensus size: 26
94175591 GGCATAATCG
**
94175601 TCATTTTACCAAACAAGGGTATTACGA
1 TCATTTTACCCTAC-AGGGTATTACGA
* *
94175628 TCATTTTACCCTACATGGGCATTACGG
1 TCATTTTACCCTACA-GGGTATTACGA
* *
94175655 TTATTTTACCCTATAGTGGTATTACGA
1 TCATTTTACCCTACAG-GGTATTACGA
94175682 TCATTTTACC
1 TCATTTTACC
94175692 TATTTTGGGG
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 2 0.04
27 51 0.96
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.37
Consensus pattern (26 bp):
TCATTTTACCCTACAGGGTATTACGA
Found at i:94182356 original size:28 final size:28
Alignment explanation
Indices: 94182325--94182417 Score: 80
Period size: 33 Copynumber: 3.1 Consensus size: 28
94182315 ATATATAACA
94182325 CAGTTTGGGCTTTAGCCCTATACAGTAT
1 CAGTTTGGGCTTTAGCCCTATACAGTAT
*
94182353 CAGTACAGTCTGGGCTTTAGCCCTATACAGTAA
1 CAGT----T-TGGGCTTTAGCCCTATACAGTAT
* * * *
94182386 CAGTGTGGGCCTAAG-CCTAATGCAGTAT
1 CAGTTTGGGCTTTAGCCCT-ATACAGTAT
94182414 CAGT
1 CAGT
94182418 ACAGTGTAAT
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
27 3 0.06
28 23 0.43
32 1 0.02
33 26 0.49
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.29
Consensus pattern (28 bp):
CAGTTTGGGCTTTAGCCCTATACAGTAT
Found at i:94182367 original size:33 final size:33
Alignment explanation
Indices: 94182324--94182389 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
94182314 AATATATAAC
* *
94182324 ACAGTTTGGGCTTTAGCCCTATACAGTATCAGT
1 ACAGTCTGGGCTTTAGCCCTATACAGTAACAGT
94182357 ACAGTCTGGGCTTTAGCCCTATACAGTAACAGT
1 ACAGTCTGGGCTTTAGCCCTATACAGTAACAGT
94182390 GTGGGCCTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (33 bp):
ACAGTCTGGGCTTTAGCCCTATACAGTAACAGT
Found at i:94182854 original size:27 final size:26
Alignment explanation
Indices: 94182822--94182884 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
94182812 GGTATTTCGG
*
94182822 TCATTTTACCCTACCGGGGCATTACAA
1 TCATTTTACCCTA-CAGGGCATTACAA
* * *
94182849 TTATTTTACCCTACAGGGTATTACGA
1 TCATTTTACCCTACAGGGCATTACAA
94182875 TCATTTTACC
1 TCATTTTACC
94182885 TATTTTGGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
26 19 0.61
27 12 0.39
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (26 bp):
TCATTTTACCCTACAGGGCATTACAA
Found at i:94182880 original size:26 final size:26
Alignment explanation
Indices: 94182795--94182884 Score: 90
Period size: 27 Copynumber: 3.4 Consensus size: 26
94182785 GGCATAATCT
** * *
94182795 TCATTTTACCAAACATGGGTATTTCGG
1 TCATTTTACCCTACA-GGGTATTACGA
* * *
94182822 TCATTTTACCCTACCGGGGCATTACAA
1 TCATTTTACCCTA-CAGGGTATTACGA
*
94182849 TTATTTTACCCTACAGGGTATTACGA
1 TCATTTTACCCTACAGGGTATTACGA
94182875 TCATTTTACC
1 TCATTTTACC
94182885 TATTTTGGGG
Statistics
Matches: 50, Mismatches: 12, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
26 19 0.38
27 30 0.60
28 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (26 bp):
TCATTTTACCCTACAGGGTATTACGA
Found at i:94183137 original size:18 final size:17
Alignment explanation
Indices: 94183103--94183137 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
94183093 AATCTATGCG
*
94183103 GGGCCCACAAGCCCATT
1 GGGCCCACAAACCCATT
94183120 GGGCCCACACAACCCATT
1 GGGCCCACA-AACCCATT
94183138 TCGGCCGAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.26, C:0.43, G:0.20, T:0.11
Consensus pattern (17 bp):
GGGCCCACAAACCCATT
Found at i:94187608 original size:17 final size:18
Alignment explanation
Indices: 94187582--94187616 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
94187572 ATTCTCTCAA
*
94187582 AAACCTTAAAA-CCCTTT
1 AAACCCTAAAAGCCCTTT
94187599 AAACCCTAAAAGCCCTTT
1 AAACCCTAAAAGCCCTTT
94187617 CATTCTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.40, C:0.31, G:0.03, T:0.26
Consensus pattern (18 bp):
AAACCCTAAAAGCCCTTT
Done.