Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 278 of 373
Found at i:94191391 original size:27 final size:27
Alignment explanation
Indices: 94191360--94191537 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
94191350 TAAATTGTAC
94191360 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
94191387 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94191413 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
94191441 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
94191469 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94191496 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
94191523 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
94191538 GACTCAATGG
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:94191474 original size:82 final size:81
Alignment explanation
Indices: 94191361--94191516 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
94191351 AAATTGTACA
* *
94191361 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
94191425 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
94191442 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
94191507 TGCGAGTTGA
65 TGCGAATTGA
94191517 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:94191528 original size:82 final size:81
Alignment explanation
Indices: 94191357--94191537 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
94191347 GATTAAATTG
* *
94191357 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
94191422 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
94191438 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
94191502 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
94191520 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
94191538 GACTCAATGG
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:94193222 original size:48 final size:48
Alignment explanation
Indices: 94193167--94193926 Score: 1187
Period size: 48 Copynumber: 15.9 Consensus size: 48
94193157 TATATATGTG
94193167 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* *
94193215 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* *
94193263 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTCTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* * **
94193311 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTGGGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
*
94193359 TGTGGT-AAGACCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAG-CCGAATGGCTAATGTGAAATATATATGAGATATGTATA
94193407 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* * *
94193455 TGTGGTAAAGCCGAATGGTTAATGTGAAATATGTATAAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
*
94193503 CGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATAT---ATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
*
94193546 CGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
94193594 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATAT-ATATGAGATATGTATA
94193642 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATAT-ATATGAGATATGTATA
* *
94193690 TGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* *
94193738 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATAAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* *
94193786 TGTGGTAAAGCTGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATAT-ATATGAGATATGTATA
* *
94193834 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
* * * *
94193882 TGTGGTAAAGCCGAATGACTAGTGTGAAATATGTAGGAGATATGT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
94193927 GTATATTGTG
Statistics
Matches: 672, Mismatches: 29, Indels: 22
0.93 0.04 0.03
Matches are distributed among these distances:
43 35 0.05
44 2 0.00
45 6 0.01
46 5 0.01
47 5 0.01
48 614 0.91
49 5 0.01
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
Found at i:94194118 original size:37 final size:37
Alignment explanation
Indices: 94194063--94194159 Score: 124
Period size: 37 Copynumber: 2.6 Consensus size: 37
94194053 GGAAATATAT
*
94194063 TCCGGGTAAGACCCGATGACTACATGAGGAGATTATG
1 TCCGAGTAAGACCCGATGACTACATGAGGAGATTATG
** * *
94194100 TCCGAGTAAGACCCGATGACTATGTGTGGAGATTTTG
1 TCCGAGTAAGACCCGATGACTACATGAGGAGATTATG
*
94194137 TCC-AGGTAAGACCCGATAACTAC
1 TCCGA-GTAAGACCCGATGACTAC
94194160 GCGTGGGGAC
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
36 1 0.02
37 51 0.98
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.24
Consensus pattern (37 bp):
TCCGAGTAAGACCCGATGACTACATGAGGAGATTATG
Found at i:94196142 original size:21 final size:21
Alignment explanation
Indices: 94196101--94196143 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
94196091 ATTTTAATTT
*
94196101 TTTTATTATTAGACTACTAAG
1 TTTTATTATTACACTACTAAG
*
94196122 TTTTATATATTACATTA-TAAG
1 TTTTAT-TATTACACTACTAAG
94196143 T
1 T
94196144 AGGCATTGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.51
Consensus pattern (21 bp):
TTTTATTATTACACTACTAAG
Found at i:94203650 original size:26 final size:26
Alignment explanation
Indices: 94203574--94203650 Score: 93
Period size: 26 Copynumber: 3.0 Consensus size: 26
94203564 ACATATTTTG
* *
94203574 TTACTGGCAGTTTTGCTGCGTTACTGA
1 TTACTGGCAGTTTTGCTGCGATA-TTA
* *
94203601 -TACTAGCAGCTTTGCTGCGATATTA
1 TTACTGGCAGTTTTGCTGCGATATTA
*
94203626 TTACTGGCAGTTTTACTGCGATATT
1 TTACTGGCAGTTTTGCTGCGATATT
94203651 GGTTTATTGG
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
25 2 0.05
26 40 0.95
ACGTcount: A:0.19, C:0.18, G:0.22, T:0.40
Consensus pattern (26 bp):
TTACTGGCAGTTTTGCTGCGATATTA
Found at i:94205522 original size:40 final size:40
Alignment explanation
Indices: 94205445--94205622 Score: 254
Period size: 40 Copynumber: 4.5 Consensus size: 40
94205435 TAACCAAGTA
* * *
94205445 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTTGCACAAATG
94205484 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
*
94205524 CCTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
* * *
94205564 CCTTCGGGACTTAGCCCAGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTTGCACAAATG
94205604 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
94205623 TTACCATCCG
Statistics
Matches: 127, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 15 0.12
40 112 0.88
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
Found at i:94208596 original size:40 final size:40
Alignment explanation
Indices: 94208512--94208692 Score: 176
Period size: 40 Copynumber: 4.5 Consensus size: 40
94208502 CTCAAGTAAT
* * * *
94208512 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* *
94208550 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
94208590 CTTCGGGACTTAGCCCAGATATAG-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* *
94208630 CTTC-GGATCTTAGTCC-GATTATAGTCACCTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGA-TATAGTCA-CTAGCACAAATGC
94208671 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
94208693 CATTCGAATA
Statistics
Matches: 117, Mismatches: 16, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
38 11 0.09
39 21 0.18
40 55 0.47
41 25 0.21
42 5 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:94208685 original size:81 final size:79
Alignment explanation
Indices: 94208512--94208692 Score: 231
Period size: 81 Copynumber: 2.3 Consensus size: 79
94208502 CTCAAGTAAT
* * * *
94208512 CTTCGGGATTTAG-CCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCCCGGATATAGTC
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTC
* *
94208576 ACTAGCATAAATGC
66 ACTAGCACAAAAGC
* * * *
94208590 CTTCGGGACTTAGCCCAGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCC-GATTATAG
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCAC-AAGGCCTTCGGATCTTAGCCCGGA-TATAG
94208654 TCACCTAGCACAAAAGC
64 TCA-CTAGCACAAAAGC
94208671 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
94208693 CATTCGAATA
Statistics
Matches: 88, Mismatches: 11, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
78 12 0.14
79 18 0.20
80 26 0.30
81 32 0.36
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTC
ACTAGCACAAAAGC
Found at i:94216794 original size:40 final size:40
Alignment explanation
Indices: 94216698--94216914 Score: 334
Period size: 40 Copynumber: 5.5 Consensus size: 40
94216688 AAACCAAGTA
* *
94216698 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
94216737 CC-TCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
94216776 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
94216816 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
94216856 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
94216896 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
94216915 TTACCATCCG
Statistics
Matches: 169, Mismatches: 5, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
38 11 0.07
39 27 0.16
40 131 0.78
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:94220335 original size:24 final size:24
Alignment explanation
Indices: 94220285--94220336 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
94220275 GTGTTTTGTT
* *
94220285 GAGAAAATCAAGGAGAGGATTGGG
1 GAGAAAAGCAAGGAGAGGATTAGG
*
94220309 GAGAAAAGCAAGGAGAGGATTATG
1 GAGAAAAGCAAGGAGAGGATTAGG
94220333 GAGA
1 GAGA
94220337 GTTTTTAGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.44, C:0.04, G:0.40, T:0.12
Consensus pattern (24 bp):
GAGAAAAGCAAGGAGAGGATTAGG
Found at i:94222423 original size:40 final size:40
Alignment explanation
Indices: 94222349--94222532 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
94222339 GCTCCTCGTT
*
94222349 CAAATGCCTTCGGGA-ATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
94222388 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
94222428 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
94222467 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
94222508 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
94222533 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 47 0.38
40 62 0.50
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:94222492 original size:79 final size:80
Alignment explanation
Indices: 94222351--94222532 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 80
94222341 TCCTCGTTCA
** *
94222351 AATGCCTTCGGGAATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
94222415 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
* **
94222430 AATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
* *
94222493 TATGGTCACTTAGCAC
65 TATAGTAACTTAGCAC
*
94222509 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGA
94222533 CATCATTCAA
Statistics
Matches: 88, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 69 0.78
80 16 0.18
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:94230397 original size:79 final size:79
Alignment explanation
Indices: 94230294--94230517 Score: 283
Period size: 79 Copynumber: 2.8 Consensus size: 79
94230284 GCTCCTCGTT
* *
94230294 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTC-GGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
94230359 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * *
94230374 CAAATGCCATCGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
94230437 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* * * * *
94230452 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
94230516 GA
64 GA
94230518 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
78 36 0.29
79 58 0.47
80 30 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:94230517 original size:40 final size:40
Alignment explanation
Indices: 94230294--94230517 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
94230284 GCTCCTCGTT
* *
94230294 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
94230334 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
94230374 CAAATGCCATC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
94230413 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
94230452 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
94230493 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
94230518 CATCATTCAA
Statistics
Matches: 160, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 68 0.43
40 78 0.49
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:94239614 original size:50 final size:50
Alignment explanation
Indices: 94239531--94239649 Score: 195
Period size: 50 Copynumber: 2.4 Consensus size: 50
94239521 TATGGCTTGT
* *
94239531 CACTTGGTTCCTAAACGTG-TTCTAGAGGGATGTTAGCCTACAGGCTAGG
1 CACTTGGTGCCTAGACGTGTTTCTAGAGGGATGTTAGCCTACAGGCTAGG
*
94239580 CACTTGGTGCCTAGACGTGTTTCTAGAGGGATGTTAGCCTACGGGCTAGG
1 CACTTGGTGCCTAGACGTGTTTCTAGAGGGATGTTAGCCTACAGGCTAGG
*
94239630 CACTTGGTGCCTAGGCGTGT
1 CACTTGGTGCCTAGACGTGT
94239650 ACTTGGTTGG
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
49 17 0.26
50 48 0.74
ACGTcount: A:0.18, C:0.21, G:0.32, T:0.29
Consensus pattern (50 bp):
CACTTGGTGCCTAGACGTGTTTCTAGAGGGATGTTAGCCTACAGGCTAGG
Found at i:94255392 original size:40 final size:40
Alignment explanation
Indices: 94255313--94255489 Score: 232
Period size: 40 Copynumber: 4.5 Consensus size: 40
94255303 CGAATGATAA
* * *
94255313 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * **
94255353 CCGGGCTATGTCCCGAAGGCATTTATGCTAGTTATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
94255393 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
94255433 CCGAGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
94255473 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
94255490 ATACTTGGGT
Statistics
Matches: 118, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.10
40 105 0.89
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:94255755 original size:22 final size:22
Alignment explanation
Indices: 94255715--94255756 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
94255705 GAATGTGCAT
*
94255715 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
94255737 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
94255757 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:94264044 original size:24 final size:25
Alignment explanation
Indices: 94264003--94264071 Score: 88
Period size: 26 Copynumber: 2.8 Consensus size: 25
94263993 CCTCTTTAAT
*
94264003 AACTAGGGC-AAAGCCCTTT-GATA
1 AACTGGGGCAAAAGCCCTTTCGATA
*
94264026 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAAGCCC-TTTCGATA
*
94264052 AACTGGAGCAAAAGCCCTTT
1 AACTGGGGCAAAAGCCCTTT
94264072 TTGCACTTCC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
23 8 0.20
24 7 0.17
25 6 0.15
26 19 0.47
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (25 bp):
AACTGGGGCAAAAGCCCTTTCGATA
Found at i:94265529 original size:40 final size:40
Alignment explanation
Indices: 94265477--94265708 Score: 365
Period size: 40 Copynumber: 5.8 Consensus size: 40
94265467 ATAACCACAA
* * * *
94265477 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
94265517 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
94265557 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
94265597 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
*
94265639 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
94265679 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
94265709 GTATTCAAAT
Statistics
Matches: 178, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
40 139 0.78
42 39 0.22
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:94265667 original size:82 final size:81
Alignment explanation
Indices: 94265477--94265716 Score: 383
Period size: 82 Copynumber: 3.0 Consensus size: 81
94265467 ATAACCACAA
* * * * *
94265477 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTCTTAGCC
*
94265542 CGGATATA-TCAACTT
66 CGGATATATTCAACTC
94265557 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTCTTAGCC
94265622 CGGATATATGTCAACTC
66 CGGATATAT-TCAACTC
* *
94265639 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTCTTAGCC
*
94265704 CGGATGTATTCAA
66 CGGATATATTCAA
94265717 ATGCTCATGC
Statistics
Matches: 149, Mismatches: 9, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
80 68 0.46
81 4 0.03
82 77 0.52
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.27
Consensus pattern (81 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATTCAACTC
Found at i:94265669 original size:122 final size:120
Alignment explanation
Indices: 94265457--94265708 Score: 407
Period size: 122 Copynumber: 2.1 Consensus size: 120
94265447 TCTTCGGAAT
* * *
94265457 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
* *
94265521 GAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAATTGCCTTCGGGTC
66 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTC
* * *
94265576 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGC
1 TTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAACCCGGATATA-G-CAACTCGC
94265641 ACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTC
64 ACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTC
94265698 TTAGCCCGGAT
1 TTAGCCCGGAT
94265709 GTATTCAAAT
Statistics
Matches: 122, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
119 4 0.03
120 43 0.35
121 1 0.01
122 74 0.61
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (120 bp):
TTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTC
Found at i:94273964 original size:40 final size:40
Alignment explanation
Indices: 94273912--94274143 Score: 365
Period size: 40 Copynumber: 5.8 Consensus size: 40
94273902 ATAACCACAA
* * * *
94273912 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
94273952 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
94273992 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
94274032 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
* *
94274074 GCACAAATGCCTTCGGGTCTTAGCCCGAATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
94274114 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
94274144 GTATTCAAAT
Statistics
Matches: 177, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
40 138 0.78
42 39 0.22
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:94274106 original size:122 final size:120
Alignment explanation
Indices: 94273912--94274143 Score: 392
Period size: 122 Copynumber: 1.9 Consensus size: 120
94273902 ATAACCACAA
* * *
94273912 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
* *
94273977 CGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CGAATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
94274032 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATA-G-CAACTCGCACAAATGCCTTCGGGTCTTAG
94274097 CCCGAATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGAT
64 CCCGAATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGAT
94274144 GTATTCAAAT
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
120 30 0.29
121 1 0.01
122 73 0.70
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (120 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGAATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:94274108 original size:82 final size:81
Alignment explanation
Indices: 94273912--94274151 Score: 383
Period size: 82 Copynumber: 3.0 Consensus size: 81
94273902 ATAACCACAA
* * * *
94273912 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
94273977 CGGATATA-TCAACTT
66 CGGATATATTCAACTC
94273992 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
94274057 CGGATATATGTCAACTC
66 CGGATATAT-TCAACTC
* * *
94274074 GCACAAATGCCTTCGGGTCTTAGCCCGAATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
94274139 CGGATGTATTCAA
66 CGGATATATTCAA
94274152 ATGCTCATGC
Statistics
Matches: 149, Mismatches: 9, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
80 69 0.46
81 4 0.03
82 76 0.51
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (81 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATTCAACTC
Found at i:94279510 original size:45 final size:45
Alignment explanation
Indices: 94279340--94279546 Score: 267
Period size: 45 Copynumber: 4.6 Consensus size: 45
94279330 TATCGTATAG
* ** *
94279340 TACTATTCGGGCCTTTGAGCCCAGCAGGCTATAATATCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
* * * *
94279385 TACTATTCGGGCCTTTGAGCCTAGTAGGTTATAATTCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
94279430 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
* * *
94279475 TACTATTAGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
* *
94279520 TGA-TA-TCGGG-CTTCGAGGCTAGCAGGC
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGC
94279547 AAAATACCAA
Statistics
Matches: 147, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
43 16 0.11
44 4 0.03
45 126 0.86
46 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
Found at i:94282044 original size:26 final size:26
Alignment explanation
Indices: 94281969--94282045 Score: 73
Period size: 26 Copynumber: 3.0 Consensus size: 26
94281959 ACATATTCTG
* * *
94281969 TTACTGGCATCTTTGCTGCGTTACTA
1 TTACTGGCAACTTTGCTGCGATATTA
* * ** *
94281995 ATACTGGTAGTTTTGCTGCAATATTA
1 TTACTGGCAACTTTGCTGCGATATTA
*
94282021 TTACTGGCAACTTTGCTACGATATT
1 TTACTGGCAACTTTGCTGCGATATT
94282046 GGTGTGTTGG
Statistics
Matches: 38, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (26 bp):
TTACTGGCAACTTTGCTGCGATATTA
Found at i:94287827 original size:48 final size:48
Alignment explanation
Indices: 94287756--94287997 Score: 430
Period size: 48 Copynumber: 5.0 Consensus size: 48
94287746 CAAGATAAAT
* *
94287756 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
94287804 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
94287852 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
94287900 ATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
94287948 ATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
94287996 AT
1 AT
94287998 GTGTGTATAT
Statistics
Matches: 186, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 186 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:94288188 original size:37 final size:37
Alignment explanation
Indices: 94288138--94288240 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
94288128 GGAAATATAT
94288138 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
94288175 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
94288212 TCTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
94288241 GGACTATTTG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:94293839 original size:27 final size:28
Alignment explanation
Indices: 94293809--94293863 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
94293799 CCAAATTGAT
94293809 AAATAACTATTATGTCCC-TATG-ATGTA
1 AAATAACTATTATG-CCCTTATGTATGTA
* *
94293836 AAATGACTGTTATGCCCTTATGTATGTA
1 AAATAACTATTATGCCCTTATGTATGTA
94293864 TGACTGTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 3 0.12
27 16 0.67
28 5 0.21
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (28 bp):
AAATAACTATTATGCCCTTATGTATGTA
Found at i:94294847 original size:29 final size:29
Alignment explanation
Indices: 94294800--94294878 Score: 122
Period size: 29 Copynumber: 2.7 Consensus size: 29
94294790 GGGGTGTTAC
*
94294800 AAAAGGGATGGTGATGACCATTAACTATG
1 AAAAGGGATGGTGACGACCATTAACTATG
*
94294829 AAAAGGGATGATGACGACCATTAACTATG
1 AAAAGGGATGGTGACGACCATTAACTATG
* *
94294858 AAAAAGGATGGTGACAACCAT
1 AAAAGGGATGGTGACGACCAT
94294879 CGATTAATGG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.42, C:0.13, G:0.25, T:0.20
Consensus pattern (29 bp):
AAAAGGGATGGTGACGACCATTAACTATG
Found at i:94294933 original size:28 final size:28
Alignment explanation
Indices: 94294863--94294947 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
94294853 CTATGAAAAA
94294863 GGATGGTGACAACCATCGATTAATG-GAAAG
1 GGATGGTGACAACCATCG---AATGTGAAAG
**
94294893 GGATGGTTTCAACCATCGAATGTGAAAG
1 GGATGGTGACAACCATCGAATGTGAAAG
*
94294921 GGATGGTGACAACCATCGAATATGAAA
1 GGATGGTGACAACCATCGAATGTGAAA
94294948 AGAGACAGTT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
27 4 0.08
28 29 0.59
30 16 0.33
ACGTcount: A:0.36, C:0.14, G:0.28, T:0.21
Consensus pattern (28 bp):
GGATGGTGACAACCATCGAATGTGAAAG
Found at i:94294962 original size:29 final size:28
Alignment explanation
Indices: 94294902--94294965 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
94294892 GGGATGGTTT
* * **
94294902 CAACCATCGAATGTGAAAGGGATGGTGA
1 CAACCATCGAATATGAAAGAGACAGTGA
*
94294930 CAACCATCGAATATGAAAAGAGACAGTTA
1 CAACCATCGAATATG-AAAGAGACAGTGA
94294959 CAACCAT
1 CAACCAT
94294966 TGTTTAGCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 14 0.47
29 16 0.53
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.17
Consensus pattern (28 bp):
CAACCATCGAATATGAAAGAGACAGTGA
Found at i:94301291 original size:29 final size:29
Alignment explanation
Indices: 94301258--94301315 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
94301248 TCGTTTACAT
94301258 AATTTATTCACTATTTAATTCCATTCCTA
1 AATTTATTCACTATTTAATTCCATTCCTA
94301287 AATTTATTCACTATTTAATTCCATTCCTA
1 AATTTATTCACTATTTAATTCCATTCCTA
94301316 CTATTTTTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.21, G:0.00, T:0.48
Consensus pattern (29 bp):
AATTTATTCACTATTTAATTCCATTCCTA
Found at i:94301312 original size:17 final size:17
Alignment explanation
Indices: 94301263--94301312 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
94301253 TACATAATTT
94301263 ATTCACTATTTAATTCC
1 ATTCACTATTTAATTCC
*
94301280 ATTC-CTA---AATT-T
1 ATTCACTATTTAATTCC
94301292 ATTCACTATTTAATTCC
1 ATTCACTATTTAATTCC
94301309 ATTC
1 ATTC
94301313 CTACTATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 10
0.68 0.05 0.26
Matches are distributed among these distances:
12 4 0.15
13 7 0.27
16 7 0.27
17 8 0.31
ACGTcount: A:0.30, C:0.22, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTCACTATTTAATTCC
Found at i:94302144 original size:40 final size:40
Alignment explanation
Indices: 94302107--94302291 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
94302097 GCTACTCGTT
*
94302107 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
94302147 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
94302187 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
94302226 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
94302267 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
94302292 CATCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 76 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:94302218 original size:79 final size:81
Alignment explanation
Indices: 94302107--94302289 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 81
94302097 GCTACTCGTT
* ** * *
94302107 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCCG
* *
94302171 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
94302187 CAAATGCCTTCGGG-CTTAGCCCGAA-ATTAGTATCTCACACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGAATA-TAGTAACTCACACAAATGCCTTCGGATCTTAACCCG
* *
94302250 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
94302267 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
94302290 GACATCATTC
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
78 4 0.05
79 52 0.60
80 31 0.36
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:94310804 original size:43 final size:43
Alignment explanation
Indices: 94310751--94310836 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
94310741 TCATATTTCA
*
94310751 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
1 TTTCTAATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
* * **
94310794 TTTCTAATCTCATATTCATTTCTCATCTTTTTCATTTCAATAT
1 TTTCTAATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
94310837 CAATCACATA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.24, C:0.22, G:0.01, T:0.52
Consensus pattern (43 bp):
TTTCTAATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
Found at i:94312044 original size:16 final size:18
Alignment explanation
Indices: 94312023--94312055 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
94312013 CATCTATTTT
94312023 TCTTTC-TTTT-ATTATA
1 TCTTTCATTTTAATTATA
94312039 TCTTTCATTTTAATTAT
1 TCTTTCATTTTAATTAT
94312056 TATAATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.67
Consensus pattern (18 bp):
TCTTTCATTTTAATTATA
Found at i:94314840 original size:29 final size:29
Alignment explanation
Indices: 94314828--94315086 Score: 253
Period size: 29 Copynumber: 8.9 Consensus size: 29
94314818 GACTATCGAT
94314828 TATGAAAAGGGATGGTGAT-GACCATCAAC
1 TATGAAAAGGGATGGTG-TCGACCATCAAC
* * * *
94314857 TATGAGAAGGGGT-GTGACGACCATCAAA
1 TATGAAAAGGGATGGTGTCGACCATCAAC
* * *
94314885 TATGAAAAGGGATGATTTCTACTC-TCAAC
1 TATGAAAAGGGATGGTGTCGAC-CATCAAC
94314914 TATGAAAAGGGATGGTGAT-GACCATCAAC
1 TATGAAAAGGGATGGTG-TCGACCATCAAC
* *
94314943 TATGAAAAAGGATGGTGACGACCATCAAC
1 TATGAAAAGGGATGGTGTCGACCATCAAC
* *
94314972 TATGAAAAGGGATGGTGACGACCATCAAT
1 TATGAAAAGGGATGGTGTCGACCATCAAC
*
94315001 TAATGAAAAGGGATGGTTTCGACCATCGAA-
1 T-ATGAAAAGGGATGGTGTCGACCATC-AAC
* * * * *
94315031 TATGAAAATGGTTGGTGACAACCATTGAA-
1 TATGAAAAGGGATGGTGTCGACCA-TCAAC
94315060 TATGAAAAGGGATGGT-TACGACCATCA
1 TATGAAAAGGGATGGTGT-CGACCATCA
94315087 TGTAGCACAC
Statistics
Matches: 189, Mismatches: 31, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
28 26 0.14
29 134 0.71
30 27 0.14
31 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.22
Consensus pattern (29 bp):
TATGAAAAGGGATGGTGTCGACCATCAAC
Found at i:94314956 original size:58 final size:58
Alignment explanation
Indices: 94314828--94315086 Score: 301
Period size: 58 Copynumber: 4.5 Consensus size: 58
94314818 GACTATCGAT
* * *
94314828 TATGAAAAGGGATGGTGAT-GACCATCAACTATGAGAAGGGGT-GTGACGACCATCAAA
1 TATGAAAAGGGATGGT-TTCGACCATCAACTATGAAAAGGGATGGTGACGACCATCAAA
* * * *
94314885 TATGAAAAGGGATGATTTCTACTC-TCAACTATGAAAAGGGATGGTGATGACCATCAAC
1 TATGAAAAGGGATGGTTTCGAC-CATCAACTATGAAAAGGGATGGTGACGACCATCAAA
* ** *
94314943 TATGAAAAAGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACGACCATCAAT
1 TATGAAAAGGGATGGTTTCGACCATCAACTATGAAAAGGGATGGTGACGACCATCAAA
* * * **
94315001 TAATGAAAAGGGATGGTTTCGACCATCGAA-TATGAAAATGGTTGGTGACAACCATTGAA
1 T-ATGAAAAGGGATGGTTTCGACCATC-AACTATGAAAAGGGATGGTGACGACCATCAAA
*
94315060 TATGAAAAGGGATGGTTACGACCATCA
1 TATGAAAAGGGATGGTTTCGACCATCA
94315087 TGTAGCACAC
Statistics
Matches: 172, Mismatches: 24, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
56 1 0.01
57 35 0.20
58 88 0.51
59 46 0.27
60 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.22
Consensus pattern (58 bp):
TATGAAAAGGGATGGTTTCGACCATCAACTATGAAAAGGGATGGTGACGACCATCAAA
Found at i:94315036 original size:88 final size:86
Alignment explanation
Indices: 94314828--94315086 Score: 310
Period size: 88 Copynumber: 3.0 Consensus size: 86
94314818 GACTATCGAT
* * *
94314828 TATGAAAAGGGATGGTGATGACCATCAACTATGAGAAGGGGT-GTGACGACCATCAAATATGAAA
1 TATGAAAAGGGATGGTGATGACCATCAACTATGAAAAAGGATGGTGACGACCATC-AATATGAAA
* * *
94314892 AGGGATGATTTCTACTC-TCAAC
65 AGGGATGGTTACGAC-CATCAAC
94314914 TATGAAAAGGGATGGTGATGACCATCAACTATGAAAAAGGATGGTGACGACCATCAACTATGAAA
1 TATGAAAAGGGATGGTGATGACCATCAACTATGAAAAAGGATGGTGACGACCATCAA-TATGAAA
* *
94314979 AGGGATGGTGACGACCATCAAT
65 AGGGATGGTTACGACCATCAAC
* * * * *
94315001 TAATGAAAAGGGATGGT-TTCGACCATCGAA-TATGAAAATGGTTGGTGACAACCATTGAATATG
1 T-ATGAAAAGGGATGGTGAT-GACCATC-AACTATGAAAAAGGATGGTGACGACCA-TCAATATG
94315064 AAAAGGGATGGTTACGACCATCA
62 AAAAGGGATGGTTACGACCATCA
94315087 TGTAGCACAC
Statistics
Matches: 152, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
86 42 0.28
87 36 0.24
88 69 0.45
89 5 0.03
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.22
Consensus pattern (86 bp):
TATGAAAAGGGATGGTGATGACCATCAACTATGAAAAAGGATGGTGACGACCATCAATATGAAAA
GGGATGGTTACGACCATCAAC
Found at i:94320018 original size:27 final size:26
Alignment explanation
Indices: 94319970--94320029 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
94319960 GCGAGGCTGC
*
94319970 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
94319997 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
94320023 CAGATAT
1 CAGATAT
94320030 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:94323453 original size:40 final size:40
Alignment explanation
Indices: 94323355--94323617 Score: 298
Period size: 40 Copynumber: 6.6 Consensus size: 40
94323345 TCCTCGTTCA
* * * * *
94323355 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
94323394 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
94323434 AATGCCTTCAGGACTTAACCCGAATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
94323474 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
94323514 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
94323554 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
94323594 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
94323618 CAGCATTCAA
Statistics
Matches: 196, Mismatches: 24, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
39 37 0.19
40 151 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:94323626 original size:41 final size:41
Alignment explanation
Indices: 94323549--94323626 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
94323539 TTAGTATCTC
* * *
94323549 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
94323590 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
94323627 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:94336916 original size:47 final size:47
Alignment explanation
Indices: 94336819--94336941 Score: 158
Period size: 47 Copynumber: 2.6 Consensus size: 47
94336809 GTGCGAATAA
* *
94336819 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAGAAGT
* * * *
94336866 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGGATAATT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAGAAGT
* * *
94336913 TACCTTGATTTTGCTA-TGGTCATGGTATA
1 TACCTTGATTTGGCTACGGGCCATGGTATA
94336942 AATACTTATC
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
46 11 0.16
47 56 0.84
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAGAAGT
Found at i:94343135 original size:16 final size:17
Alignment explanation
Indices: 94343103--94343135 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
94343093 ACTTGCATAC
*
94343103 AAAATATCTCATTAACA
1 AAAATATCTCATAAACA
94343120 AAAATATCTC-TAAACA
1 AAAATATCTCATAAACA
94343136 TTCATTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAATATCTCATAAACA
Found at i:94344985 original size:42 final size:42
Alignment explanation
Indices: 94344904--94345028 Score: 130
Period size: 42 Copynumber: 3.0 Consensus size: 42
94344894 ATGTTGGTGC
* *
94344904 CGATGCCATGTCCCAA-ACATGGTCTTATACA-G-GACCTCATAT
1 CGATGCCATGT-CCAAGACATGGTC-T-TACATGAAATCTCATAT
94344946 CGATGCCATGTCCAAGACATGGTCTTACATGAAATCTCATAT
1 CGATGCCATGTCCAAGACATGGTCTTACATGAAATCTCATAT
* * * * * *
94344988 CAACGCCATATCCTAGATATGGTCTTACATGAAATCACATA
1 CGATGCCATGTCCAAGACATGGTCTTACATGAAATCTCATA
94345029 CCGGTGCCGA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
40 4 0.06
41 6 0.08
42 62 0.86
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (42 bp):
CGATGCCATGTCCAAGACATGGTCTTACATGAAATCTCATAT
Found at i:94345075 original size:48 final size:48
Alignment explanation
Indices: 94345034--94345209 Score: 262
Period size: 48 Copynumber: 3.7 Consensus size: 48
94345024 ACATACCGGT
* * *
94345034 GCCGATGCCATATCCCAGATATGGTTTTACACTGGCACACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAC
* * * *
94345082 ACCGATGCTATGTCCCAAACATGGTCTTACACTGGCACACATATCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAC
** *
94345130 GCTAATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAC
94345178 GCCGATGCCATGTCCCAGACATGGTCTTACAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACAC
94345210 GGGATCTCAT
Statistics
Matches: 112, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 112 1.00
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAC
Found at i:94349162 original size:22 final size:22
Alignment explanation
Indices: 94349134--94349182 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
94349124 CTTTCCAAAG
*
94349134 ACTAACCAATAAGGAGTCATTC
1 ACTAACCAATAAGGAGTAATTC
94349156 ACTAACCAATAAGGAGTAATTC
1 ACTAACCAATAAGGAGTAATTC
94349178 -CTAAC
1 ACTAAC
94349183 GGTGCCTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 5 0.19
22 21 0.81
ACGTcount: A:0.43, C:0.22, G:0.12, T:0.22
Consensus pattern (22 bp):
ACTAACCAATAAGGAGTAATTC
Found at i:94358259 original size:29 final size:29
Alignment explanation
Indices: 94358218--94358336 Score: 129
Period size: 28 Copynumber: 4.2 Consensus size: 29
94358208 ACATGGCTTG
* *
94358218 GAAT-TGATTTGGGTC-AGATGGGTCATAT
1 GAATGTGATTTGGGCCTA-ATGGGCCATAT
94358246 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAT
* **
94358275 GAATGAGA-TTGGGCCTTGTGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAT
* *
94358303 GAATGAGA-TTGGGCCTAGTGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAT
*
94358331 GCATGT
1 GAATGT
94358337 ATGTAGACTT
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
28 53 0.65
29 27 0.33
30 1 0.01
ACGTcount: A:0.24, C:0.13, G:0.34, T:0.30
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAT
Found at i:94358296 original size:28 final size:28
Alignment explanation
Indices: 94358236--94358331 Score: 147
Period size: 28 Copynumber: 3.4 Consensus size: 28
94358226 TTGGGTCAGA
* * *
94358236 TGGGTCATATGAATGTGATTTGGGCCTAA
1 TGGGCCATATGAATGAGA-TTGGGCCTAG
*
94358265 TGGGCCATATGAATGAGATTGGGCCTTG
1 TGGGCCATATGAATGAGATTGGGCCTAG
94358293 TGGGCCATATGAATGAGATTGGGCCTAG
1 TGGGCCATATGAATGAGATTGGGCCTAG
94358321 TGGGCCATATG
1 TGGGCCATATG
94358332 CATGTATGTA
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
28 46 0.74
29 16 0.26
ACGTcount: A:0.23, C:0.14, G:0.34, T:0.29
Consensus pattern (28 bp):
TGGGCCATATGAATGAGATTGGGCCTAG
Found at i:94364079 original size:13 final size:13
Alignment explanation
Indices: 94364061--94364088 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
94364051 CTGGACTTAC
94364061 TCACACGGGTGTG
1 TCACACGGGTGTG
94364074 TCACACGGGTGTG
1 TCACACGGGTGTG
94364087 TC
1 TC
94364089 TCTTTGGTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.25, G:0.36, T:0.25
Consensus pattern (13 bp):
TCACACGGGTGTG
Found at i:94364194 original size:13 final size:13
Alignment explanation
Indices: 94364176--94364202 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
94364166 GGAGTAATCA
94364176 CACACGGGCGTGT
1 CACACGGGCGTGT
94364189 CACACGGGCGTGT
1 CACACGGGCGTGT
94364202 C
1 C
94364203 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:94374577 original size:24 final size:25
Alignment explanation
Indices: 94374530--94374577 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
94374520 TAAGTATATA
94374530 AACATAAAAAATTAATAATGTAAAC
1 AACATAAAAAATTAATAATGTAAAC
*
94374555 AACAT-AATAATTAACTAAT-TAAA
1 AACATAAAAAATTAA-TAATGTAAA
94374578 ATTAAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.62, C:0.08, G:0.02, T:0.27
Consensus pattern (25 bp):
AACATAAAAAATTAATAATGTAAAC
Found at i:94383624 original size:18 final size:17
Alignment explanation
Indices: 94383603--94383662 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 17
94383593 TTGACAACCA
94383603 TGATGATGAGCTTGTATC
1 TGATGATGA-CTTGTATC
*
94383621 TGATGA--ACTGGATGATC
1 TGATGATGACTTG-T-ATC
94383638 TGGATGATGAACTTGTATC
1 T-GATGATG-ACTTGTATC
94383657 TGATGA
1 TGATGA
94383663 ATTTGATGAC
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
15 3 0.09
16 2 0.06
17 4 0.12
18 16 0.47
19 4 0.12
20 1 0.03
21 4 0.12
ACGTcount: A:0.27, C:0.10, G:0.28, T:0.35
Consensus pattern (17 bp):
TGATGATGACTTGTATC
Found at i:94383626 original size:36 final size:36
Alignment explanation
Indices: 94383579--94383684 Score: 124
Period size: 36 Copynumber: 2.9 Consensus size: 36
94383569 CATTGGAAAG
* **
94383579 TGTATCTGATGAAGTTGACAACCATGATGATGAGCT
1 TGTATCTGATGAACTTGATGACCATGATGATGAGCT
* * *
94383615 TGTATCTGATGAACTGGATGATC-TGGATGATGAACT
1 TGTATCTGATGAACTTGATGACCAT-GATGATGAGCT
* *
94383651 TGTATCTGATGAATTTGATGACCAAGATGATGAG
1 TGTATCTGATGAACTTGATGACCATGATGATGAG
94383685 TTTGATGAAG
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
35 1 0.02
36 56 0.98
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.32
Consensus pattern (36 bp):
TGTATCTGATGAACTTGATGACCATGATGATGAGCT
Found at i:94385867 original size:25 final size:25
Alignment explanation
Indices: 94385833--94385884 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
94385823 CATCAACATT
94385833 CAATCAAATTCAGTCCACCATGTTG
1 CAATCAAATTCAGTCCACCATGTTG
94385858 CAATCAAATTCAGTCCACCATGTTG
1 CAATCAAATTCAGTCCACCATGTTG
94385883 CA
1 CA
94385885 TAAATTAGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (25 bp):
CAATCAAATTCAGTCCACCATGTTG
Found at i:94397790 original size:39 final size:40
Alignment explanation
Indices: 94397690--94397874 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
94397680 TCGAATGATG
* * * *
94397690 TCCGAGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
94397729 ATCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
94397770 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
94397809 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
94397848 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
94397875 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 36 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:94397896 original size:79 final size:79
Alignment explanation
Indices: 94397743--94397907 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
94397733 AGACTAAGAT
* **
94397743 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
94397808 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
94397822 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
94397885 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
94397901 CCGAAGG
1 CCGAAGG
94397908 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:94401437 original size:22 final size:20
Alignment explanation
Indices: 94401395--94401435 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
94401385 GAGATAGGGA
94401395 TAAATAAAGTGAATCAACTC
1 TAAATAAAGTGAATCAACTC
94401415 TAAATATAAGTG-ATCAACTC
1 TAAATA-AAGTGAATCAACTC
94401435 T
1 T
94401436 CTTCGACAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.29
Consensus pattern (20 bp):
TAAATAAAGTGAATCAACTC
Found at i:94406419 original size:27 final size:26
Alignment explanation
Indices: 94406379--94406490 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
94406369 AGCATGGCTG
* * *
94406379 CCAGAACAGATAATGCGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
94406405 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
94406433 CCAGAATAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
94406460 CCAGATCAGATAATTGTGGC-GTAGCCA
1 CCAGAACAGATAA-TGTGGCAG-AGCCA
94406487 CCAG
1 CCAG
94406491 GACGCTTCGT
Statistics
Matches: 75, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
26 7 0.09
27 52 0.69
28 16 0.21
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:94406470 original size:54 final size:54
Alignment explanation
Indices: 94406379--94406490 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
94406369 AGCATGGCTG
*
94406379 CCAGAACAGATAATGCGACAGAGTCACCAGATACAGATAATCGTGGCAG-AGCCA
1 CCAGAACAGATAATGCGACAGAGCCACCAGATACAGATAATCGTGGC-GTAGCCA
* * * *
94406433 CCAGAATAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCGTAGCCA
1 CCAGAACAGATA-ATGCGACAGAGCCACCAGATACAGATAATCGTGGCGTAGCCA
94406487 CCAG
1 CCAG
94406491 GACGCTTCGT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
53 1 0.02
54 33 0.65
55 17 0.33
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATAATGCGACAGAGCCACCAGATACAGATAATCGTGGCGTAGCCA
Found at i:94406920 original size:8 final size:8
Alignment explanation
Indices: 94406904--94406945 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
94406894 TCTCAAAATA
94406904 TCGGCATT
1 TCGGCATT
*
94406912 TCAGCATT
1 TCGGCATT
*
94406920 TCGGCTTT
1 TCGGCATT
94406928 TCGGCATT
1 TCGGCATT
*
94406936 TCGGCTTT
1 TCGGCATT
94406944 TC
1 TC
94406946 AGTTTTTGCC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.10, C:0.26, G:0.21, T:0.43
Consensus pattern (8 bp):
TCGGCATT
Found at i:94406929 original size:16 final size:16
Alignment explanation
Indices: 94406904--94406947 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
94406894 TCTCAAAATA
*
94406904 TCGGCATTTCAGCATT
1 TCGGCTTTTCAGCATT
*
94406920 TCGGCTTTTCGGCATT
1 TCGGCTTTTCAGCATT
94406936 TCGGCTTTTCAG
1 TCGGCTTTTCAG
94406948 TTTTTGCCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.11, C:0.25, G:0.23, T:0.41
Consensus pattern (16 bp):
TCGGCTTTTCAGCATT
Found at i:94406952 original size:24 final size:24
Alignment explanation
Indices: 94406904--94406952 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
94406894 TCTCAAAATA
*
94406904 TCGGCATTTCAGCATTTCGGCTTT
1 TCGGCATTTCAGCATTTCAGCTTT
* * *
94406928 TCGGCATTTCGGCTTTTCAGTTTT
1 TCGGCATTTCAGCATTTCAGCTTT
94406952 T
1 T
94406953 GCCAATCTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.10, C:0.22, G:0.20, T:0.47
Consensus pattern (24 bp):
TCGGCATTTCAGCATTTCAGCTTT
Found at i:94411143 original size:46 final size:45
Alignment explanation
Indices: 94411076--94411250 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
94411066 TGTAACCCGC
*
94411076 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
* * *
94411122 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGTAT
* *** * * *
94411168 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
*
94411215 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
94411251 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 69 0.65
47 34 0.32
48 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGTAT
Found at i:94411195 original size:93 final size:93
Alignment explanation
Indices: 94411083--94411255 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
94411073 CGCCCATAAG
* * *
94411083 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
94411148 ATGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
94411176 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
94411241 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
94411256 CAAATATCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:94416521 original size:20 final size:20
Alignment explanation
Indices: 94416496--94416543 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
94416486 TGGATCTATG
94416496 GCTACTACAATAGGTGTGCC
1 GCTACTACAATAGGTGTGCC
94416516 GCTACTACAATAGGTGTGCC
1 GCTACTACAATAGGTGTGCC
*
94416536 TCTACTAC
1 GCTACTAC
94416544 GAATCATACA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (20 bp):
GCTACTACAATAGGTGTGCC
Found at i:94418018 original size:23 final size:23
Alignment explanation
Indices: 94417983--94418027 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
94417973 CATACTCACA
94417983 AACAACACAAATAGAACACGAAC
1 AACAACACAAATAGAACACGAAC
* * *
94418006 AACAACTCCAATAGAATACGAA
1 AACAACACAAATAGAACACGAA
94418028 GAAATAGGAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.58, C:0.24, G:0.09, T:0.09
Consensus pattern (23 bp):
AACAACACAAATAGAACACGAAC
Found at i:94440710 original size:27 final size:27
Alignment explanation
Indices: 94440680--94440856 Score: 194
Period size: 27 Copynumber: 6.5 Consensus size: 27
94440670 TATTGAGTCT
* * * *
94440680 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTACATAGTCAAATC
* * *
94440707 GCACACTTAGTGCTACGTAATCAAATT
1 GCACACTTAGTGCTACATAGTCAAATC
94440734 GCACACTTAGTGCTACATAGTCAAACTC
1 GCACACTTAGTGCTACATAGTCAAA-TC
** * *
94440762 GCACACTTAGTGCCGCATGGTCAATTC
1 GCACACTTAGTGCTACATAGTCAAATC
* **
94440789 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CATAGTCAAATC
*
94440816 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACATAGTCAAATC
94440843 GCACACTTAGTGCT
1 GCACACTTAGTGCT
94440857 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAGTCAAATC
Found at i:94440820 original size:82 final size:81
Alignment explanation
Indices: 94440700--94440855 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
94440690 TGCTATATAA
* *
94440700 TCAACTCGCACACTTAGTGCTACGTAATCAAATTGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATTGCACACTTAGTGCAACATAGTCAAA-TCGCA
94440765 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * *
94440782 TCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATT-GCACACTTAGTGCAACATAGTCAAATCGC
94440845 ACACTTAGTGC
64 ACACTTAGTGC
94440856 TGTACAATTT
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 19 0.28
82 48 0.72
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATTGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:94446005 original size:134 final size:134
Alignment explanation
Indices: 94445765--94446027 Score: 463
Period size: 134 Copynumber: 2.0 Consensus size: 134
94445755 CCCGAAGTAA
94445765 GTTCGTATATGATAAATTTCATTATAAATGAATTTTAAATGCTTTGATACTGTATAAGTTGTGAA
1 GTTCGTATATGATAAATTTCATTATAAATGAATTTTAAATGCTTTGATACTGTATAAGTTGTGAA
* * * *
94445830 TACAAGACTTCGGATAAGTTTGACATTAACTCTATAGGAATTCGGCATTCGAAATCCCGGTTGAT
66 TACAAGACTTCGAATAAGTTCGACATTAACTCGATAGGAATTCGACATTCGAAATCCCGGTTGAT
94445895 GTAT
131 GTAT
*
94445899 GTTCGTATGTGATAAATTTCATTATAAATGAATTTTAAATGCTTTGATACTGTATAAGTTGTGAA
1 GTTCGTATATGATAAATTTCATTATAAATGAATTTTAAATGCTTTGATACTGTATAAGTTGTGAA
* *
94445964 TACAAGACTTCGAATAAGTTCGACATTGACTCGATAGGAATTCGACATTCGAAATCCTGGTTGA
66 TACAAGACTTCGAATAAGTTCGACATTAACTCGATAGGAATTCGACATTCGAAATCCCGGTTGA
94446028 ACCAAAGGAA
Statistics
Matches: 122, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
134 122 1.00
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (134 bp):
GTTCGTATATGATAAATTTCATTATAAATGAATTTTAAATGCTTTGATACTGTATAAGTTGTGAA
TACAAGACTTCGAATAAGTTCGACATTAACTCGATAGGAATTCGACATTCGAAATCCCGGTTGAT
GTAT
Found at i:94446184 original size:29 final size:29
Alignment explanation
Indices: 94446123--94446184 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
94446113 GCGAGTTATA
* *
94446123 CTGATTTGGCTTCAGGCCATGAGTATCAG
1 CTGATTTGGCTTCAGGCCATGAGTAACAC
* *
94446152 CTGATTTGGCTTCGGGCCATTA-TAACATC
1 CTGATTTGGCTTCAGGCCATGAGTAACA-C
94446181 CTGA
1 CTGA
94446185 CTTAGGGCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 4 0.14
29 24 0.86
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.32
Consensus pattern (29 bp):
CTGATTTGGCTTCAGGCCATGAGTAACAC
Found at i:94449095 original size:38 final size:39
Alignment explanation
Indices: 94449045--94449256 Score: 183
Period size: 46 Copynumber: 4.9 Consensus size: 39
94449035 CTGATATGAA
94449045 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
94449084 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
94449127 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G
* * *
94449175 ATGTGTAAGACCATGATTAAAAGATACCATGGCAACATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
* *
94449214 ACATGAAAAGAATAAGACCATAGTTGAAAGATACCATGGCAAC
1 --ATG---TG--TAAGACCATGGTTGAAAGATACCATGGCAAC
94449257 ATGACAGAAA
Statistics
Matches: 149, Mismatches: 7, Indels: 27
0.81 0.04 0.15
Matches are distributed among these distances:
38 36 0.24
39 1 0.01
41 4 0.03
43 2 0.01
44 1 0.01
46 104 0.70
48 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (39 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:94449151 original size:46 final size:46
Alignment explanation
Indices: 94449084--94449300 Score: 283
Period size: 46 Copynumber: 4.7 Consensus size: 46
94449074 TGGCAACCTG
* *
94449084 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
* * *
94449130 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
* *
94449176 TGTGTAAGACCATGATTAAAAGATACCATGGCAACATGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
* ** *
94449222 AGAATAAGACCATAGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAA
* * * *
94449268 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
94449301 TCACGTCAAA
Statistics
Matches: 154, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 153 0.99
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
Found at i:94449276 original size:138 final size:130
Alignment explanation
Indices: 94449035--94449300 Score: 336
Period size: 138 Copynumber: 2.0 Consensus size: 130
94449025 AGTGTGCTCT
* * * * *
94449035 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGATTAAAAGATACCATGGCAACATGTGAGTAAGACCATAGT
* * * * *
94449100 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
*
94449165 CTGATATGAGATGTGTAAGACCATGATTAAAAGATACCATGGCAACATGACATGAAAAGAATAAG
1 CTGATATGAAATGTGTAAGACCATGATTAAAAGATACCATGGCAACATG---TG---AG--TAAG
94449230 ACCATAGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACAC
58 ACCATAGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCATAGTTGAAAGACAC
*
94449294 TATGGCA
122 CATGGCA
94449301 TCACGTCAAA
Statistics
Matches: 115, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
130 45 0.39
133 2 0.02
136 1 0.01
137 1 0.01
138 66 0.57
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGATTAAAAGATACCATGGCAACATGTGAGTAAGACCATAGT
TGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:94449606 original size:23 final size:25
Alignment explanation
Indices: 94449561--94449607 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
94449551 AATAAATATA
*
94449561 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
94449586 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
94449608 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:94453749 original size:11 final size:11
Alignment explanation
Indices: 94453733--94453761 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
94453723 ATTTTGTCTT
94453733 TGAATTTTTGA
1 TGAATTTTTGA
94453744 TGAATTTTTGA
1 TGAATTTTTGA
94453755 TGAATTT
1 TGAATTT
94453762 GAGTAATTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.17, T:0.55
Consensus pattern (11 bp):
TGAATTTTTGA
Found at i:94461893 original size:43 final size:43
Alignment explanation
Indices: 94461738--94461894 Score: 131
Period size: 43 Copynumber: 3.7 Consensus size: 43
94461728 TGTGTTTTCG
* *
94461738 TGTAAGACCACGTCTGGGA-AGTTGGCATTGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGACA-TTGGCATCGA-TATTTGA-TTACA
* * * * * * *
94461782 TGTAAGCCCATGTCTGGGACATCGACATC-TTATTTGATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACA
** * *
94461824 TGTAAGACCTTGTCTAGGACAATGGCATCGATATTTGATTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACA
* *
94461867 TGTAAGACCACGTCTGGGGCGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
94461895 TGTATGAGCT
Statistics
Matches: 86, Mismatches: 24, Indels: 7
0.74 0.21 0.06
Matches are distributed among these distances:
42 27 0.31
43 36 0.42
44 22 0.26
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACA
Found at i:94463773 original size:21 final size:22
Alignment explanation
Indices: 94463744--94463784 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
94463734 GAGTGTATTG
*
94463744 TGATGTATGTGGAAATGAAATA
1 TGATGTATGTGCAAATGAAATA
*
94463766 TGAT-TATGTGCCAATGAAA
1 TGATGTATGTGCAAATGAAA
94463785 CATAAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (22 bp):
TGATGTATGTGCAAATGAAATA
Found at i:94465973 original size:170 final size:170
Alignment explanation
Indices: 94465679--94466018 Score: 581
Period size: 170 Copynumber: 2.0 Consensus size: 170
94465669 GTATTGGTTG
94465679 TGAAATGGTTGAACATTTGGTACGCATTTGAAGCTTATTTGTTGCCTGTAGGGAGGACCCTTAAT
1 TGAAATGGTTGAACATTTGGTACGCATTTGAAGCTTATTTGTTGCCTGTAGGGAGGACCCTTAAT
*
94465744 GGGTGGAAATTTGGCCTTGTAAATGGCCTATTTTTACCCACACGGGAAAAGACATGGGCGTGTGT
66 GGGTGGAAATTTGGCCTTGTAAATGGCCTACTTTTACCCACACGGGAAAAGACATGGGCGTGTGT
* *
94465809 CTCAGCTATGTTGCTTGAGGGCCATTTCGAAATGGGCCTA
131 CTCAGCTATGTTGCTTGAGGGCCATTTCAAAATAGGCCTA
* * *
94465849 TGAAATGGTTGAACATTTGGTATGCATTTGAAGCTTATTTGTTTCTTGTAGGGAGGACCCTTAAT
1 TGAAATGGTTGAACATTTGGTACGCATTTGAAGCTTATTTGTTGCCTGTAGGGAGGACCCTTAAT
* ** *
94465914 GGGTGGCAATTTGGCCTTGTAAATGGCCTACTTTTACCCACACGGTCAAAGATATGGGCGTGTGT
66 GGGTGGAAATTTGGCCTTGTAAATGGCCTACTTTTACCCACACGGGAAAAGACATGGGCGTGTGT
*
94465979 CTCAGCTGTGTTGCTTGAGGGCCATTTCAAAATAGGCCTA
131 CTCAGCTATGTTGCTTGAGGGCCATTTCAAAATAGGCCTA
94466019 GGCAGACCAC
Statistics
Matches: 159, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
170 159 1.00
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.32
Consensus pattern (170 bp):
TGAAATGGTTGAACATTTGGTACGCATTTGAAGCTTATTTGTTGCCTGTAGGGAGGACCCTTAAT
GGGTGGAAATTTGGCCTTGTAAATGGCCTACTTTTACCCACACGGGAAAAGACATGGGCGTGTGT
CTCAGCTATGTTGCTTGAGGGCCATTTCAAAATAGGCCTA
Found at i:94470818 original size:30 final size:30
Alignment explanation
Indices: 94470783--94470841 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
94470773 TTTACGAGCC
94470783 TAGGGGCAAAAATGTAATTTTGA-CAAAATT
1 TAGGGGCAAAAATGTAATTTT-ACCAAAATT
*
94470813 TAGGGGCAAAATTGTAATTTTACCAAAAT
1 TAGGGGCAAAAATGTAATTTTACCAAAAT
94470842 ATGATTTTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTTTACCAAAATT
Found at i:94471159 original size:27 final size:27
Alignment explanation
Indices: 94471118--94471171 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
94471108 TGTCATGTGA
* *
94471118 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
94471145 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
94471172 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:94471494 original size:49 final size:49
Alignment explanation
Indices: 94471430--94471648 Score: 276
Period size: 49 Copynumber: 4.4 Consensus size: 49
94471420 TCACATTTTT
94471430 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTA
* * * * * *
94471479 GTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTTGATCACGTGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCGGATAA--TTGGTCACATGTGTA
* *** ** *
94471530 ATACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACGTGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACATGTGTA
* *
94471580 GTACTAAGTGCAGGCTACTACGTGTACTGAATAATTGGTCACATGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTA
94471629 GTACTAAGTGCAGGCTACTA
1 GTACTAAGTGCAGGCTACTA
94471649 TGCGTACTAA
Statistics
Matches: 144, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
49 64 0.44
50 42 0.29
51 38 0.26
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (49 bp):
GTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTA
Found at i:94474724 original size:38 final size:38
Alignment explanation
Indices: 94474681--94474832 Score: 178
Period size: 38 Copynumber: 3.8 Consensus size: 38
94474671 TTTCAAATTA
94474681 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* * *
94474719 ACATGTTTAACCGTGGTATATCCACTTAGCACCATGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
*
94474760 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
*
94474804 ACATGTTTAACCGTGGCATATCCACTTAG
1 ACATGTATAACCGTGGCATATCCACTTAG
94474833 TGTGACAGCC
Statistics
Matches: 96, Mismatches: 9, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
38 55 0.57
39 1 0.01
40 3 0.03
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 3 0.03
46 1 0.01
47 27 0.28
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:94476850 original size:40 final size:40
Alignment explanation
Indices: 94476573--94476836 Score: 458
Period size: 40 Copynumber: 6.6 Consensus size: 40
94476563 GGATTGATAC
*
94476573 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
94476613 CCGGGCTAAGTCTCGAAGGCA-TTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
94476652 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
94476692 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
94476732 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
94476772 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
94476812 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
94476837 AGCTAGTAGC
Statistics
Matches: 214, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 38 0.18
40 176 0.82
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:94487374 original size:27 final size:27
Alignment explanation
Indices: 94487333--94487386 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
94487323 TGTCATGTGA
* *
94487333 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
94487360 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
94487387 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:94487709 original size:49 final size:49
Alignment explanation
Indices: 94487645--94487863 Score: 276
Period size: 49 Copynumber: 4.4 Consensus size: 49
94487635 TCACATTTTT
94487645 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTA
* * * * * *
94487694 GTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTTGATCACGTGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCGGATAA--TTGGTCACATGTGTA
* *** ** *
94487745 ATACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACGTGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACATGTGTA
* *
94487795 GTACTAAGTGCAGGCTACTACGTGTACTGAATAATTGGTCACATGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTA
94487844 GTACTAAGTGCAGGCTACTA
1 GTACTAAGTGCAGGCTACTA
94487864 TGCGTACTAA
Statistics
Matches: 144, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
49 64 0.44
50 42 0.29
51 38 0.26
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (49 bp):
GTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTA
Found at i:94490938 original size:38 final size:38
Alignment explanation
Indices: 94490895--94491046 Score: 178
Period size: 38 Copynumber: 3.8 Consensus size: 38
94490885 TTTCAAATTA
94490895 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* * *
94490933 ACATGTTTAACCGTGGTATATCCACTTAGCACCATGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
*
94490974 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
*
94491018 ACATGTTTAACCGTGGCATATCCACTTAG
1 ACATGTATAACCGTGGCATATCCACTTAG
94491047 TGTGACAGCC
Statistics
Matches: 96, Mismatches: 9, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
38 55 0.57
39 1 0.01
40 3 0.03
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 3 0.03
46 1 0.01
47 27 0.28
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:94492841 original size:40 final size:40
Alignment explanation
Indices: 94492784--94493071 Score: 458
Period size: 40 Copynumber: 7.2 Consensus size: 40
94492774 GGATTGATAC
94492784 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
94492824 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
94492864 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
94492904 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATCA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
*
94492944 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATCA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* *
94492984 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
94493024 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
94493064 CC-GGCTAA
1 CCGGGCTAA
94493072 ACTCCGAAGG
Statistics
Matches: 235, Mismatches: 10, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
39 9 0.04
40 225 0.96
41 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:94501038 original size:40 final size:40
Alignment explanation
Indices: 94500981--94501221 Score: 365
Period size: 40 Copynumber: 6.2 Consensus size: 40
94500971 GGATTGATAC
94500981 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
94501021 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
94501061 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
94501101 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-T-TAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
94501139 CCCGGCTAAGT-CCGAAGGCA-TTGTGCGAG-TACTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
94501175 CC-GGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
94501214 CC-GGCTAA
1 CCGGGCTAA
94501222 ACTCCGAAGG
Statistics
Matches: 188, Mismatches: 7, Indels: 13
0.90 0.03 0.06
Matches are distributed among these distances:
35 10 0.05
36 21 0.11
37 20 0.11
38 17 0.09
39 9 0.05
40 111 0.59
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:94505460 original size:15 final size:15
Alignment explanation
Indices: 94505437--94505470 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
94505427 GAAGCCTAGA
*
94505437 ATAAGGAAATCCAAG
1 ATAAAGAAATCCAAG
*
94505452 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
94505467 ATAA
1 ATAA
94505471 GCAAATCCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.12, G:0.15, T:0.18
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:94507331 original size:14 final size:14
Alignment explanation
Indices: 94507312--94507347 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
94507302 AGTCACACGC
94507312 CCGTGTGGATTGGG
1 CCGTGTGGATTGGG
94507326 CCGTGTGGATTGGG
1 CCGTGTGGATTGGG
94507340 CCGTGTGG
1 CCGTGTGG
94507348 TCAATTTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.06, C:0.17, G:0.50, T:0.28
Consensus pattern (14 bp):
CCGTGTGGATTGGG
Found at i:94508643 original size:11 final size:11
Alignment explanation
Indices: 94508606--94508667 Score: 54
Period size: 11 Copynumber: 5.5 Consensus size: 11
94508596 AAACACAACA
94508606 AAAAGCAGCAGC
1 AAAA-CAGCAGC
*
94508618 AAAACAACA-C
1 AAAACAGCAGC
* *
94508628 TAAAATAGCGGC
1 -AAAACAGCAGC
94508640 AAAACAGCAGC
1 AAAACAGCAGC
* *
94508651 AAAACAACATC
1 AAAACAGCAGC
94508662 AAAACA
1 AAAACA
94508668 ACACCGAACA
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
10 1 0.03
11 34 0.85
12 5 0.12
ACGTcount: A:0.58, C:0.24, G:0.13, T:0.05
Consensus pattern (11 bp):
AAAACAGCAGC
Found at i:94514599 original size:38 final size:38
Alignment explanation
Indices: 94514548--94514708 Score: 243
Period size: 38 Copynumber: 4.2 Consensus size: 38
94514538 TCGAAATATG
94514548 ATATCCGGGTTAAATCCCGCAGGCTTCGTGC-GCGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTG-GTATT
* * *
94514586 ATATCCAGGTTAAATCCCACAGGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
94514624 ATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
* *
94514662 ATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
94514700 ATATTCGGG
1 ATATCCGGG
94514709 CCTTTGAGCC
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
38 110 0.99
39 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.30
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
Found at i:94514798 original size:45 final size:45
Alignment explanation
Indices: 94514702--94514814 Score: 117
Period size: 46 Copynumber: 2.5 Consensus size: 45
94514692 CTGGTATTAT
* * * * *
94514702 ATTCGGGCCTTT-GAGCCTAACAGACTATTATGTCGGTGAGACATT
1 ATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAGACATG
94514747 ATTCGGGCTTTTCGAGCCTAGCAGGCTATAATGCCGGTGA-A-ATG
1 ATTCGGGC-TTTCGAGCCTAGCAGGCTATAATGCCGGTGAGACATG
*
94514791 ATATCGGGC-CTCGAGCCTAGCAGG
1 AT-TCGGGCTTTCGAGCCTAGCAGG
94514815 AAAAATACCA
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
43 14 0.24
44 5 0.08
45 17 0.29
46 23 0.39
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (45 bp):
ATTCGGGCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAGACATG
Found at i:94515931 original size:14 final size:15
Alignment explanation
Indices: 94515899--94515937 Score: 62
Period size: 14 Copynumber: 2.6 Consensus size: 15
94515889 AAGCTTATTG
94515899 TGAAGAAGACAACAAA
1 TGAAGAAG-CAACAAA
94515915 TGAAGAAGCAA-AAA
1 TGAAGAAGCAACAAA
94515929 TGAAGAAGC
1 TGAAGAAGC
94515938 TATTGAGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 12 0.52
15 3 0.13
16 8 0.35
ACGTcount: A:0.59, C:0.10, G:0.23, T:0.08
Consensus pattern (15 bp):
TGAAGAAGCAACAAA
Found at i:94516130 original size:11 final size:10
Alignment explanation
Indices: 94516096--94516127 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
94516086 TTATTTTAAA
94516096 AATTAAAAAT
1 AATTAAAAAT
94516106 AA--AAAAAT
1 AATTAAAAAT
94516114 AATTAAAAAT
1 AATTAAAAAT
94516124 AATT
1 AATT
94516128 TAATATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
8 8 0.40
10 12 0.60
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
AATTAAAAAT
Found at i:94516132 original size:18 final size:18
Alignment explanation
Indices: 94516090--94516138 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
94516080 GTAAAGTTAT
*
94516090 TTTAAAAATTAAAAATAA
1 TTTAATAATTAAAAATAA
***
94516108 AAAAATAATTAAAAATAA
1 TTTAATAATTAAAAATAA
94516126 TTTAAT-ATTAAAA
1 TTTAATAATTAAAA
94516139 TTGGGCTGGG
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TTTAATAATTAAAAATAA
Found at i:94516997 original size:38 final size:38
Alignment explanation
Indices: 94516954--94517028 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
94516944 TTTCAAATTA
94516954 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTG
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTG
* *
94516992 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGT
94517029 TAATGAATCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTG
Found at i:94517179 original size:48 final size:47
Alignment explanation
Indices: 94516999--94517165 Score: 253
Period size: 47 Copynumber: 3.5 Consensus size: 47
94516989 GTGACATGTT
94516999 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
94517046 TAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
** * * *
94517093 TAACCGTGACATATCCACTTACCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
**
94517141 TAATTGTGGTATATCCACTTAGCAC
1 TAACCGTGGTATATCCACTTAGCAC
94517166 TACATTACAT
Statistics
Matches: 107, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 74 0.69
48 33 0.31
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.31
Consensus pattern (47 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:94518754 original size:27 final size:27
Alignment explanation
Indices: 94518724--94518901 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
94518714 ATATTGAGCC
* *
94518724 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
94518751 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
94518778 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
94518806 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
94518833 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
94518860 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
94518887 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
94518902 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:94518863 original size:82 final size:81
Alignment explanation
Indices: 94518745--94518900 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
94518735 TGCTATATAA
* * *
94518745 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
94518810 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
94518827 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
94518891 CACTTAGTGC
65 CACTTAGTGC
94518901 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:94521963 original size:51 final size:51
Alignment explanation
Indices: 94521845--94521975 Score: 183
Period size: 51 Copynumber: 2.5 Consensus size: 51
94521835 ATCGGGATGT
* * *
94521845 TACAAGTGTGGTACTATGTGAAGGGCACTTTGTGAAGAAATATAGCTTTGG
1 TACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGC
*
94521896 TCACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGGTAGCTTTGAC
1 T-ACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTG-C
* *
94521948 TACAAGGGTGGTACTATGTGCAGGCCAC
1 TACAAGTGTGGTACTATGTGAAGGCCAC
94521976 CGGGTATCCG
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
51 36 0.50
52 36 0.50
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (51 bp):
TACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGC
Found at i:94525590 original size:27 final size:27
Alignment explanation
Indices: 94525560--94525737 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
94525550 ATATCGAGCC
* * *
94525560 CGCACACTCAGTGCTATAAAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
94525587 CGCACACTTAGTGCCACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
94525614 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
94525642 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
94525669 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
94525696 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
94525723 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
94525738 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:94525673 original size:82 final size:81
Alignment explanation
Indices: 94525581--94525736 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
94525571 TGCTATAAAA
*
94525581 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 TCAACTCGCACACTTAGTG-CATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGC
94525645 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
94525663 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
94525728 ACTTAGTGC
66 ACTTAGTGC
94525737 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 17 0.25
82 51 0.75
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:94535393 original size:25 final size:25
Alignment explanation
Indices: 94535359--94535410 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
94535349 CCAGCATGGA
94535359 GAAGAAAATGAGCTGATTTTAGCTT
1 GAAGAAAATGAGCTGATTTTAGCTT
94535384 GAAGAAAATGAGCTGATTTTAGCTT
1 GAAGAAAATGAGCTGATTTTAGCTT
94535409 GA
1 GA
94535411 TTTTTTCCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.31
Consensus pattern (25 bp):
GAAGAAAATGAGCTGATTTTAGCTT
Found at i:94551337 original size:40 final size:40
Alignment explanation
Indices: 94551289--94551515 Score: 400
Period size: 40 Copynumber: 5.7 Consensus size: 40
94551279 GCAAACACAT
* *
94551289 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
94551329 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
94551369 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
94551409 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
94551449 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
94551489 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
94551516 ATCCAATGCT
Statistics
Matches: 177, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 177 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:94559758 original size:40 final size:40
Alignment explanation
Indices: 94559710--94559936 Score: 400
Period size: 40 Copynumber: 5.7 Consensus size: 40
94559700 GCAAACACAT
* *
94559710 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
94559750 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
94559790 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
94559830 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
94559870 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
94559910 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
94559937 ATCCAATGCT
Statistics
Matches: 177, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 177 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:94565492 original size:48 final size:48
Alignment explanation
Indices: 94565437--94565550 Score: 201
Period size: 48 Copynumber: 2.4 Consensus size: 48
94565427 CGAGTTGCTA
*
94565437 ATTTGGCTTCGGGCCATGATATCATTACTTCGGATATAAGCTACCTTG
1 ATTTGGCTTCGGGCCATGATATCAGTACTTCGGATATAAGCTACCTTG
* *
94565485 ATTTGGCTTCGAGCCATGATATCAGTATTTCGGATATAAGCTACCTTG
1 ATTTGGCTTCGGGCCATGATATCAGTACTTCGGATATAAGCTACCTTG
94565533 ATTTGGCTTCGGGCCATG
1 ATTTGGCTTCGGGCCATG
94565551 GTATAGGTGC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 62 1.00
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (48 bp):
ATTTGGCTTCGGGCCATGATATCAGTACTTCGGATATAAGCTACCTTG
Found at i:94567313 original size:27 final size:26
Alignment explanation
Indices: 94567265--94567324 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
94567255 GTGAGGCTAC
*
94567265 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
94567292 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
94567318 CAAATAT
1 CAGATAT
94567325 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:94567339 original size:2 final size:2
Alignment explanation
Indices: 94567334--94567359 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
94567324 TATATATATA
94567334 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
94567360 GCGAAGCCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:94568065 original size:27 final size:27
Alignment explanation
Indices: 94568028--94568276 Score: 311
Period size: 27 Copynumber: 9.2 Consensus size: 27
94568018 GGGCAAAATG
* * * *
94568028 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
94568055 GTATTTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
94568082 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
94568109 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
94568136 ATAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
94568163 GTAATTCTACCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
94568190 GTAATTCTACACTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
94568217 GTAATTCTACCCTATAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
94568243 GATAATTCTACCCTACAGGGGCATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
94568271 ATAATT
1 GTAATT
94568277 TTGTAAATCG
Statistics
Matches: 191, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 190 0.99
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:94568372 original size:27 final size:27
Alignment explanation
Indices: 94568296--94568541 Score: 212
Period size: 27 Copynumber: 9.1 Consensus size: 27
94568286 GATGGTAAAA
* * * *
94568296 TGGTAATTCTATAAATCGGGGGTACTT
1 TGGTAATTTTACAAATCGAGGGTATTT
* *
94568323 TGGCAATTTTCACAAGTCGAGGGTATTT
1 TGGTAATTTT-ACAAATCGAGGGTATTT
**
94568351 CAGTAATTTTACAAATCGAGGGTATTT
1 TGGTAATTTTACAAATCGAGGGTATTT
*** *
94568378 CAATAATTTTTCAAA-CTGAGGGTATTT
1 TGGTAATTTTACAAATC-GAGGGTATTT
* *
94568405 CGGTAATTTAACAAATC-AGGAGTATTT
1 TGGTAATTTTACAAATCGAGG-GTATTT
* * *
94568432 TGGTAATTTTACAAACCAAAGGTATTT
1 TGGTAATTTTACAAATCGAGGGTATTT
*
94568459 TGGTAATTTTACAAAT-TAGGGGTATTT
1 TGGTAATTTTACAAATCGA-GGGTATTT
** * *
94568486 TGGTAATTTTGTAAACCAAGGGTATTT
1 TGGTAATTTTACAAATCGAGGGTATTT
*
94568513 TGGTAATTTTACAAA-CTAGGGGTATTT
1 TGGTAATTTTACAAATCGA-GGGTATTT
94568540 TG
1 TG
94568542 ATATTTTTGT
Statistics
Matches: 181, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
26 7 0.04
27 150 0.83
28 24 0.13
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
TGGTAATTTTACAAATCGAGGGTATTT
Found at i:94568563 original size:26 final size:26
Alignment explanation
Indices: 94568426--94568564 Score: 116
Period size: 27 Copynumber: 5.2 Consensus size: 26
94568416 CAAATCAGGA
**
94568426 GTATTTTGGTAATTTTACAAACCAAAG
1 GTATTTTGGTAATTTTGTAAACC-AAG
** ** *
94568453 GTATTTTGGTAATTTTACAAATTAGGG
1 GTATTTTGGTAATTTTGTAAACCA-AG
94568480 GTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTTGTAAACCAA-G
** * *
94568507 GTATTTTGGTAATTTTACAAACTAGGG
1 GTATTTTGGTAATTTTGTAAACCA-AG
* * *
94568534 GTATTTTGATATTTTTGTAAACCAAA
1 GTATTTTGGTAATTTTGTAAACCAAG
94568560 GTATT
1 GTATT
94568565 CTAAACAGGG
Statistics
Matches: 90, Mismatches: 19, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
26 6 0.07
27 84 0.93
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
GTATTTTGGTAATTTTGTAAACCAAG
Found at i:94570221 original size:27 final size:28
Alignment explanation
Indices: 94570190--94570295 Score: 137
Period size: 27 Copynumber: 3.9 Consensus size: 28
94570180 CTGCCAGAAT
*
94570190 AGATA-TTGTGACAGAGTCACCAGATAC
1 AGATATTTGTGACAGAGCCACCAGATAC
* *
94570217 AGATA-TTGTGACACAGCCACCAGATAT
1 AGATATTTGTGACAGAGCCACCAGATAC
**
94570244 AGATATTTGTGGTAGAGCCACCAGAT-C
1 AGATATTTGTGACAGAGCCACCAGATAC
*
94570271 AGATATTTGTGGCAGAGCCACCAGA
1 AGATATTTGTGACAGAGCCACCAGA
94570296 ACGCTTCCTC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
27 53 0.76
28 17 0.24
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.23
Consensus pattern (28 bp):
AGATATTTGTGACAGAGCCACCAGATAC
Found at i:94570266 original size:55 final size:53
Alignment explanation
Indices: 94570183--94570296 Score: 149
Period size: 55 Copynumber: 2.1 Consensus size: 53
94570173 AGTATGGCTG
*
94570183 CCAGAATAGATATTGTGACAGAGTCACCAGATACAGATA-TTGTGACACAGCCA
1 CCAGAATAGATATTGTGACAGAGCCACCAGAT-CAGATATTTGTGACACAGCCA
** * *
94570236 CCAGATATAGATATTTGTGGTAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGA-ATAGATA-TTGTGACAGAGCCACCAGATCAGATATTTGTGACACAGCCA
94570291 CCAGAA
1 CCAGAA
94570297 CGCTTCCTCC
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
53 5 0.09
54 14 0.26
55 34 0.64
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (53 bp):
CCAGAATAGATATTGTGACAGAGCCACCAGATCAGATATTTGTGACACAGCCA
Found at i:94570448 original size:27 final size:26
Alignment explanation
Indices: 94570405--94570462 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
94570395 TAACCTTAGA
*
94570405 GGTATAATGGTAATTTTGCACCTAGG
1 GGTATAATGGTAATTTTACACCTAGG
* *
94570431 GGTATAATGGTAATTTTTATACTTAGG
1 GGTATAATGGTAA-TTTTACACCTAGG
94570458 GGTAT
1 GGTAT
94570463 TTTAGTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 13 0.46
27 15 0.54
ACGTcount: A:0.28, C:0.07, G:0.26, T:0.40
Consensus pattern (26 bp):
GGTATAATGGTAATTTTACACCTAGG
Done.