Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 279 of 373
Found at i:94574210 original size:28 final size:28
Alignment explanation
Indices: 94574137--94574239 Score: 124
Period size: 27 Copynumber: 3.8 Consensus size: 28
94574127 GGCTGCCAAA
* * *
94574137 ACAGATA-TTGTGACAGAGTCA-CTGAT
1 ACAGATATTTGTGGCAGAGCCACCAGAT
*
94574163 ACAGATA-TTGTTGCAGAGCCACCAGAT
1 ACAGATATTTGTGGCAGAGCCACCAGAT
* *
94574190 ATAGATATTTGTGGTAGAGCCACCAGAT
1 ACAGATATTTGTGGCAGAGCCACCAGAT
94574218 -CAGATATTTGTGGCAGAGCCAC
1 ACAGATATTTGTGGCAGAGCCAC
94574240 TGAATGCTCC
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
26 18 0.27
27 30 0.45
28 18 0.27
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.25
Consensus pattern (28 bp):
ACAGATATTTGTGGCAGAGCCACCAGAT
Found at i:94577676 original size:21 final size:20
Alignment explanation
Indices: 94577652--94577690 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
94577642 GAGTATTTTG
94577652 ATGTTTAATGATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
*
94577673 ATGTTTGATGATAGTTAT
1 ATGTTTAATGATAGTTAT
94577691 ATAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Found at i:94584432 original size:25 final size:26
Alignment explanation
Indices: 94584389--94584459 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
94584379 CTGTTTTAAT
94584389 AACTGGGGC-AAAGCCCTTTT-GATA
1 AACTGGGGCAAAAGCCCTTTTCGATA
* *
94584413 AACTGGGGCAAAAGCCCTTTTCGGTG
1 AACTGGGGCAAAAGCCCTTTTCGATA
*
94584439 AATTGGGGCAAAAGCCCTTTT
1 AACTGGGGCAAAAGCCCTTTT
94584460 TGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
24 9 0.21
25 11 0.26
26 22 0.52
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (26 bp):
AACTGGGGCAAAAGCCCTTTTCGATA
Found at i:94586980 original size:83 final size:80
Alignment explanation
Indices: 94586841--94587028 Score: 241
Period size: 83 Copynumber: 2.3 Consensus size: 80
94586831 CGGATGATAT
* * * * *
94586841 CCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
* *
94586906 TGCGAGTAGTTGCTATAC
66 TAC--G-AGTTACTATAC
* * *
94586924 CCGGGCTAAGTCCTGAAGGCATTTGCGCTAGTGACTATTTCCGGGCTAAGACCCGAAGGCATGTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
*
94586989 TACGAGTTACTATAT
66 TACGAGTTACTATAC
*
94587004 CCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
94587029 TGCGAGTTGC
Statistics
Matches: 92, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
80 32 0.35
81 1 0.01
83 59 0.64
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
TACGAGTTACTATAC
Found at i:94587044 original size:40 final size:40
Alignment explanation
Indices: 94586837--94587061 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 40
94586827 TATTCGGATG
* * *
94586837 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
94586877 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTGCT
* * * *
94586920 ATACCCGGGCTAAGTCCTGAAGGCATTTGCGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
* * * * *
94586960 ATTTCCGGGCTAAGACCCGAAGGCATGTGTACGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
* *
94587000 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
* * *
94587040 ATAT-CTGACTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
94587062 TACTTGGTTT
Statistics
Matches: 153, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.10
40 101 0.66
41 1 0.01
43 35 0.23
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
Found at i:94587840 original size:16 final size:18
Alignment explanation
Indices: 94587804--94587840 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
94587794 AAAATCACTA
94587804 TAAATAGTAGGAATGAAAT
1 TAAATAGTA-GAATGAAAT
94587823 TAAATAGT-GAAT-AAAT
1 TAAATAGTAGAATGAAAT
94587839 TA
1 TA
94587841 TGTAATCGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.33
17 4 0.22
19 8 0.44
ACGTcount: A:0.54, C:0.00, G:0.16, T:0.30
Consensus pattern (18 bp):
TAAATAGTAGAATGAAAT
Found at i:94593675 original size:13 final size:13
Alignment explanation
Indices: 94593659--94593696 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
94593649 CAATCTCATA
94593659 TCTCAATTTCAAT
1 TCTCAATTTCAAT
94593672 TCTCAA-TTCAATT
1 TCTCAATTTCAA-T
94593685 TCTC-ATTTCAAT
1 TCTCAATTTCAAT
94593697 CCAATAGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (13 bp):
TCTCAATTTCAAT
Found at i:94593684 original size:18 final size:19
Alignment explanation
Indices: 94593646--94593686 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
94593636 TGGTTCATGT
94593646 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
94593665 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
94593683 TTTC
1 TTTC
94593687 TCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:94593916 original size:23 final size:22
Alignment explanation
Indices: 94593848--94593932 Score: 93
Period size: 21 Copynumber: 3.9 Consensus size: 22
94593838 CCTGATCAGT
* *
94593848 ATACGACACATAAAGTGCCTAA
1 ATACGACACATGAGGTGCCTAA
*
94593870 A-ACGACACATGAGGTGCCT-G
1 ATACGACACATGAGGTGCCTAA
*
94593890 ATACGACACACGAGGTGCCTAAA
1 ATACGACACATGAGGTGCCT-AA
* *
94593913 ATACGACACATAAAGTGCCT
1 ATACGACACATGAGGTGCCT
94593933 GATCGATAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
20 1 0.02
21 33 0.63
22 1 0.02
23 17 0.33
ACGTcount: A:0.39, C:0.25, G:0.20, T:0.16
Consensus pattern (22 bp):
ATACGACACATGAGGTGCCTAA
Found at i:94593934 original size:44 final size:42
Alignment explanation
Indices: 94593848--94593935 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 42
94593838 CCTGATCAGT
* * *
94593848 ATACGACACATAAAGTGCCTAAAACGACACATGAGGTGCCTG
1 ATACGACACACAAAGTGCCTAAAACGACACATAAAGTGCCTG
* *
94593890 ATACGACACACGAGGTGCCTAAAATACGACACATAAAGTGCCTG
1 ATACGACACACAAAGTGCCT-AAA-ACGACACATAAAGTGCCTG
94593934 AT
1 AT
94593936 CGATAAAGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 17 0.44
43 3 0.08
44 19 0.49
ACGTcount: A:0.39, C:0.24, G:0.20, T:0.17
Consensus pattern (42 bp):
ATACGACACACAAAGTGCCTAAAACGACACATAAAGTGCCTG
Found at i:94597669 original size:28 final size:28
Alignment explanation
Indices: 94597637--94597713 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
94597627 TGTCGTTGAT
* *
94597637 TACTCAATACCTCGCACACTAAGTGCCA
1 TACTCGATATCTCGCACACTAAGTGCCA
* *
94597665 TACTCGATATCTCGCACAATAAGTTCCA
1 TACTCGATATCTCGCACACTAAGTGCCA
* *
94597693 GACTCGATATCTTGCACACTA
1 TACTCGATATCTCGCACACTA
94597714 GGTGTCGTAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.26
Consensus pattern (28 bp):
TACTCGATATCTCGCACACTAAGTGCCA
Found at i:94597770 original size:39 final size:40
Alignment explanation
Indices: 94597724--94597806 Score: 114
Period size: 39 Copynumber: 2.1 Consensus size: 40
94597714 GGTGTCGTAC
94597724 ATAGCTGAAGCCATCTCAAATCGCACACTAA-TCCCATAT
1 ATAGCTGAAGCCATCTCAAATCGCACACTAAGTCCCATAT
* * * * *
94597763 ATAGCTGAAGCTATGTCGAATTGCACACTAAGTGCCATAT
1 ATAGCTGAAGCCATCTCAAATCGCACACTAAGTCCCATAT
94597803 ATAG
1 ATAG
94597807 TCGATTTGTC
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
39 27 0.71
40 11 0.29
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (40 bp):
ATAGCTGAAGCCATCTCAAATCGCACACTAAGTCCCATAT
Found at i:94601548 original size:25 final size:25
Alignment explanation
Indices: 94601506--94601554 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
94601496 CTTTATTATT
* *
94601506 ATCATTATGAAGAATTATGTGATTA
1 ATCATTATCAAGAATTATATGATTA
* *
94601531 ATCATTATCATGAGTTATATGATT
1 ATCATTATCAAGAATTATATGATT
94601555 GGTCCTCTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (25 bp):
ATCATTATCAAGAATTATATGATTA
Found at i:94606862 original size:40 final size:40
Alignment explanation
Indices: 94606795--94606946 Score: 189
Period size: 40 Copynumber: 3.8 Consensus size: 40
94606785 ATAACCACAA
* * * * * *
94606795 GCACAATTGCCTTTGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATATCAACTC
* *
94606835 GTACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATATCAACTC
* *
94606875 GCACAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGAT-ATATCAACTC
*
94606915 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGACTTAGCCCGGATAT
94606947 CATTCAAATG
Statistics
Matches: 99, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 94 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATATCAACTC
Found at i:94612467 original size:56 final size:56
Alignment explanation
Indices: 94612404--94612538 Score: 171
Period size: 56 Copynumber: 2.4 Consensus size: 56
94612394 CCATGGCATT
* * * * *
94612404 GATATATGTATGGGAGTAATACCACGTTTAATACATTAGCATCAATATGTGATTCC
1 GATATATGTGTGCGAGTAAGACCACATTTAATACACTAGCATCAATATGTGATTCC
* * * * **
94612460 GATATATGTGTGCGAGTAAGATCACATTTAATACGCTGGCATCGATATGTGATTTT
1 GATATATGTGTGCGAGTAAGACCACATTTAATACACTAGCATCAATATGTGATTCC
94612516 GATATATGTGTGCGAGTAAGACC
1 GATATATGTGTGCGAGTAAGACC
94612539 CTGTTTGGGA
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 67 1.00
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.33
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACATTTAATACACTAGCATCAATATGTGATTCC
Found at i:94638435 original size:28 final size:28
Alignment explanation
Indices: 94638361--94638435 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 28
94638351 TATATATATG
* * *
94638361 TGGCACTTAGTATGCGAAATATTGAGAA
1 TGGCACTTAGTGTGCGAGATATTAAGAA
* *
94638389 TGGCACTTGGTGTGTGAGATATTAAGTAA
1 TGGCACTTAGTGTGCGAGATATTAAG-AA
94638418 -GGCACTTAGTGTGCGAGA
1 TGGCACTTAGTGTGCGAGA
94638436 CAGCGAAGAT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.29, C:0.11, G:0.31, T:0.29
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAGATATTAAGAA
Found at i:94641214 original size:48 final size:48
Alignment explanation
Indices: 94641142--94641239 Score: 128
Period size: 48 Copynumber: 2.0 Consensus size: 48
94641132 TGTGGGACAT
*
94641142 GGCATCGATATGAGATCCGATGTAAGACCATGTCA-GGGATATGGCATC
1 GGCATCGATATGAGATACGATGTAAGACCAT-TCATGGGATATGGCATC
* * *
94641190 GGCATCGATATGAGATTACG-TGTAAGACTATTTATGGGATATGGCTTC
1 GGCATCGATATGAGA-TACGATGTAAGACCATTCATGGGATATGGCATC
94641238 GG
1 GG
94641240 TATGAGATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
47 2 0.05
48 39 0.89
49 3 0.07
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (48 bp):
GGCATCGATATGAGATACGATGTAAGACCATTCATGGGATATGGCATC
Found at i:94650838 original size:48 final size:45
Alignment explanation
Indices: 94650740--94650848 Score: 132
Period size: 48 Copynumber: 2.3 Consensus size: 45
94650730 GGGTTATTGT
*
94650740 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGG-C-CATTACGA
*
94650786 GAGCTTGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGACGA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCATT---ACGA
94650834 GAGCTAGTGTAAGAC
1 GAGCTAGTGTAAGAC
94650849 ATGCATCGTC
Statistics
Matches: 55, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
45 4 0.07
46 13 0.24
47 14 0.25
48 24 0.44
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (45 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCATTACGA
Found at i:94654824 original size:51 final size:51
Alignment explanation
Indices: 94654729--94654834 Score: 153
Period size: 51 Copynumber: 2.1 Consensus size: 51
94654719 TTTGTGAGAT
* * *
94654729 ATGTAGCATCCGAGCTCGTTGAGAGGTCCGAGTTCATGGTGGATGTGATT-C
1 ATGTAACATCCGAGCTCGTTGAGAGGTCCAAGTTCATAGTGGATGTG-TTAC
94654780 ATGTAACATCCGAGCTCGTTGAGAGGTCCAAGTTCATTAG-GGATGTGTTAC
1 ATGTAACATCCGAGCTCGTTGAGAGGTCCAAGTTCA-TAGTGGATGTGTTAC
94654831 ATGT
1 ATGT
94654835 TATGTGGTAG
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
50 2 0.04
51 46 0.92
52 2 0.04
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (51 bp):
ATGTAACATCCGAGCTCGTTGAGAGGTCCAAGTTCATAGTGGATGTGTTAC
Found at i:94665479 original size:23 final size:24
Alignment explanation
Indices: 94665427--94665480 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
94665417 TTTTTTCTTT
* *
94665427 ATTTATCCACTTTAAGTACTTTTT
1 ATTTTTCCACTTTAAGTACTTTTC
94665451 ATTTTTTCC-CTTTAA-TACTATTTC
1 A-TTTTTCCACTTTAAGTACT-TTTC
94665475 ATTTTT
1 ATTTTT
94665481 AGGTTTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 9 0.35
24 11 0.42
25 6 0.23
ACGTcount: A:0.22, C:0.17, G:0.02, T:0.59
Consensus pattern (24 bp):
ATTTTTCCACTTTAAGTACTTTTC
Found at i:94695892 original size:48 final size:48
Alignment explanation
Indices: 94695811--94695943 Score: 162
Period size: 48 Copynumber: 2.8 Consensus size: 48
94695801 CTTGCACACT
* * * *
94695811 AAGTGCTCAA-ATCATGGCCCGAAGCCAACTCAATGTATCTCGCACTCGA
1 AAGTGC-CAATATCATGGCCCGAAGCCAAATCAATGAAGCTCGCAC-CCA
* *
94695860 AA-TGCTAATATCATGGCCTGAAGCCAAATCAATGAAGCTCGCACCCA
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGAAGCTCGCACCCA
* *
94695907 AAGTGCCGATATCATGGCCCGAACCCAAATCAATGAA
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGAA
94695944 TTCCCTAATG
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
47 6 0.08
48 64 0.89
49 2 0.03
ACGTcount: A:0.35, C:0.29, G:0.18, T:0.19
Consensus pattern (48 bp):
AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGAAGCTCGCACCCA
Found at i:94696513 original size:21 final size:20
Alignment explanation
Indices: 94696485--94696523 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
94696475 CAAAACTTGT
94696485 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
94696505 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
94696524 CAAAACACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:94697733 original size:33 final size:33
Alignment explanation
Indices: 94697696--94697765 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 33
94697686 TTGTGTATTA
94697696 AAGTTACTGACATTGATCAATGGCAAAACTAAG
1 AAGTTACTGACATTGATCAATGGCAAAACTAAG
*
94697729 AAGTTAGTGACATTGATCAATGGCAAAACTAAG
1 AAGTTACTGACATTGATCAATGGCAAAACTAAG
94697762 AAGT
1 AAGT
94697766 GGTTGTGGTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.24
Consensus pattern (33 bp):
AAGTTACTGACATTGATCAATGGCAAAACTAAG
Found at i:94698429 original size:17 final size:17
Alignment explanation
Indices: 94698409--94698479 Score: 52
Period size: 17 Copynumber: 4.7 Consensus size: 17
94698399 ACATTTCACT
94698409 TTTCTTCTTTCTATCAA
1 TTTCTTCTTTCTATCAA
*
94698426 TTTCTTC---CT-TC-T
1 TTTCTTCTTTCTATCAA
* *
94698438 TTTCTT-TTTC-CTCTA
1 TTTCTTCTTTCTATCAA
94698453 -TT-TTCTTTCTATCAA
1 TTTCTTCTTTCTATCAA
94698468 TTTCTTCTTTCT
1 TTTCTTCTTTCT
94698480 TTTCTTTTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
12 6 0.15
13 4 0.10
14 11 0.27
15 3 0.07
16 2 0.05
17 15 0.37
ACGTcount: A:0.10, C:0.25, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTCTTCTTTCTATCAA
Found at i:94698463 original size:42 final size:42
Alignment explanation
Indices: 94698413--94698499 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
94698403 TTCACTTTTC
*
94698413 TTCTTTCTATCAATTTCTTCCTTCTTTTCTTTTTCCTCTATT
1 TTCTTTCTATCAATTTCTTCCTTCTTTTCTTTTTCCCCTATT
*
94698455 TTCTTTCTATCAATTTCTTCTTTCTTTTCTTTTTCCCCTATT
1 TTCTTTCTATCAATTTCTTCCTTCTTTTCTTTTTCCCCTATT
94698497 TTC
1 TTC
94698500 CTCTTTTTGC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.09, C:0.26, G:0.00, T:0.64
Consensus pattern (42 bp):
TTCTTTCTATCAATTTCTTCCTTCTTTTCTTTTTCCCCTATT
Found at i:94698478 original size:21 final size:21
Alignment explanation
Indices: 94698413--94698481 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
94698403 TTCACTTTTC
*
94698413 TTCTTTCTATCAATTTCTTCC
1 TTCTTTCTATCAATTTCTTCT
*
94698434 TTCTTTTCT-T---TTTCCTCTATT
1 TTC-TTTCTATCAATTT-CT-T-CT
94698455 TTCTTTCTATCAATTTCTTCT
1 TTCTTTCTATCAATTTCTTCT
94698476 TTCTTT
1 TTCTTT
94698482 TCTTTTTCCC
Statistics
Matches: 37, Mismatches: 3, Indels: 16
0.66 0.05 0.29
Matches are distributed among these distances:
18 3 0.08
19 2 0.05
20 6 0.16
21 15 0.41
22 6 0.16
23 2 0.05
24 3 0.08
ACGTcount: A:0.10, C:0.25, G:0.00, T:0.65
Consensus pattern (21 bp):
TTCTTTCTATCAATTTCTTCT
Found at i:94699073 original size:29 final size:29
Alignment explanation
Indices: 94699041--94699113 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
94699031 CTGATAGGCT
* * * *
94699041 ATGTGGGTCACATGATCATGTGGCAAACC
1 ATGTGGGCCACACGATCATATGCCAAACC
*
94699070 ATGTAGGCCACACGATCATATGCCAAACC
1 ATGTGGGCCACACGATCATATGCCAAACC
*
94699099 ATGTGAGCCACACGA
1 ATGTGGGCCACACGA
94699114 GCATGTGTAG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.32, C:0.26, G:0.23, T:0.19
Consensus pattern (29 bp):
ATGTGGGCCACACGATCATATGCCAAACC
Found at i:94705968 original size:25 final size:28
Alignment explanation
Indices: 94705903--94705963 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
94705893 ATATATTTAG
94705903 ATATTCCTAAAAGATAATATCCCATAATAAT
1 ATATTCCT-AAA-A-AATATCCCATAATAAT
*
94705934 ATATTTCTAAAAAATATCCCATAATAAT
1 ATATTCCTAAAAAATATCCCATAATAAT
94705962 AT
1 AT
94705964 CCTAATAGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 18 0.62
29 1 0.03
30 3 0.10
31 7 0.24
ACGTcount: A:0.49, C:0.15, G:0.02, T:0.34
Consensus pattern (28 bp):
ATATTCCTAAAAAATATCCCATAATAAT
Found at i:94707430 original size:126 final size:125
Alignment explanation
Indices: 94707204--94707585 Score: 543
Period size: 126 Copynumber: 3.0 Consensus size: 125
94707194 TTTCTGCAAG
* * * * *
94707204 AATAATAT-TAAGCAGACGTTTCTGGAA-AAGTAGTGTCGGAAAACGCTTCAAACAGGATGTACT
1 AATAAT-TCTAAGTAGACGTTTCT-GAACAAATAGTG-CCGAAAACGCTTCAAGCAGGATGCACT
* *
94707267 GTCAGCAAAATTTCTGAAAAAAGCTCCTACGTGGACGCTCTTTTGCTACAGTAGTTTGTAGAAA
63 GTCAGCAAAATTTCTGGAAAAAGCTCC-ACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* *
94707331 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGCCAAAAACACTTCAAGCAGGATGCACTGTC
1 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGCCGAAAACGCTTCAAGCAGGATGCACTGTC
*
94707396 AGCAAAATTTCTGGAAAAAGCTCTCATGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTGGAAAAAGCTC-CACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * * * *
94707457 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGCCGAAAATGCTTCAAGTAGGATACACTATC
1 AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGCCGAAAACGCTTCAAGCAGGATGCACTGTC
* *
94707522 AGTAAAATTTCTGGAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCATAGAAA
66 AGCAAAATTTCTGGAAAAAGCT-CCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
94707583 AAT
1 AAT
94707586 GAGGCTATAA
Statistics
Matches: 231, Mismatches: 20, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
126 202 0.87
127 29 0.13
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (125 bp):
AATAATTCTAAGTAGACGTTTCTGAACAAATAGTGCCGAAAACGCTTCAAGCAGGATGCACTGTC
AGCAAAATTTCTGGAAAAAGCTCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
Found at i:94711102 original size:18 final size:18
Alignment explanation
Indices: 94711064--94711105 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
94711054 GACTAAAAAA
* **
94711064 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGACT
94711082 AGGATACATATAAGGACT
1 AGGATACATATAAGGACT
94711100 AGGATA
1 AGGATA
94711106 TGCATCTGGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.45, C:0.07, G:0.26, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGACT
Found at i:94711700 original size:7 final size:7
Alignment explanation
Indices: 94711688--94711712 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
94711678 TATTACTTAT
94711688 ATACATA
1 ATACATA
94711695 ATACATA
1 ATACATA
94711702 ATACATA
1 ATACATA
94711709 ATAC
1 ATAC
94711713 TAAATCCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (7 bp):
ATACATA
Found at i:94712801 original size:48 final size:46
Alignment explanation
Indices: 94712714--94712847 Score: 146
Period size: 48 Copynumber: 2.8 Consensus size: 46
94712704 ATGCAAACAT
* **
94712714 CATAAATGAAAAAAAAAT-AAGCAGTATTGAAATTGTAATTATAA-TTG
1 CATAAATG-AAAAAATATCAAATAGTATTGAAATT-TAATTA-AATTTG
94712761 CATAAATGAATAAAATATCAAATAGTATTGCAAATTTAATTAAATTTG
1 CATAAATGAA-AAAATATCAAATAGTATTG-AAATTTAATTAAATTTG
* *
94712809 CATAAATTAAAATAATATCGAATAGTATTGAAAATTTAA
1 CATAAATGAAAA-AATATCAAATAGTATTG-AAATTTAA
94712848 AATTATCACT
Statistics
Matches: 76, Mismatches: 6, Indels: 9
0.84 0.07 0.10
Matches are distributed among these distances:
46 2 0.03
47 18 0.24
48 51 0.67
49 5 0.07
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.33
Consensus pattern (46 bp):
CATAAATGAAAAAATATCAAATAGTATTGAAATTTAATTAAATTTG
Found at i:94717799 original size:23 final size:24
Alignment explanation
Indices: 94717754--94717802 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
94717744 TTGACGATTG
**
94717754 AAAGTTAAAGTGTTTAAAAAAATT
1 AAAGTTAAAGTGTACAAAAAAATT
94717778 AAAGTTAAAGTG-ACAAAAAAATT
1 AAAGTTAAAGTGTACAAAAAAATT
94717801 AA
1 AA
94717803 TAACTAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.59, C:0.02, G:0.12, T:0.27
Consensus pattern (24 bp):
AAAGTTAAAGTGTACAAAAAAATT
Found at i:94719300 original size:16 final size:15
Alignment explanation
Indices: 94719275--94719330 Score: 55
Period size: 16 Copynumber: 3.9 Consensus size: 15
94719265 TTGATTTAAT
*
94719275 TTATTTAATATATAA
1 TTATTAAATATATAA
94719290 TTATTAAA-ATAT-A
1 TTATTAAATATATAA
*
94719303 TT-TTTAATATATAA
1 TTATTAAATATATAA
*
94719317 TAATTTAAATATAT
1 TTA-TTAAATATAT
94719331 TTAGTTTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
12 4 0.12
13 7 0.21
14 6 0.18
15 7 0.21
16 9 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTATTAAATATATAA
Found at i:94719301 original size:14 final size:14
Alignment explanation
Indices: 94719279--94719329 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
94719269 TTTAATTTAT
*
94719279 TTAATATATAATTA
1 TTAAAATATAATTA
*
94719293 TTAAAATAT-ATTT
1 TTAAAATATAATTA
* *
94719306 TTAATATATAATAA
1 TTAAAATATAATTA
*
94719320 TTTAAATATA
1 TTAAAATATA
94719330 TTTAGTTTTA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
13 11 0.38
14 18 0.62
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
TTAAAATATAATTA
Found at i:94719314 original size:27 final size:27
Alignment explanation
Indices: 94719278--94719332 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
94719268 ATTTAATTTA
*
94719278 TTTAATATATAATTATTAAAATATATT
1 TTTAATATATAATAATTAAAATATATT
*
94719305 TTTAATATATAATAATTTAAATATATT
1 TTTAATATATAATAATTAAAATATATT
94719332 T
1 T
94719333 AGTTTTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (27 bp):
TTTAATATATAATAATTAAAATATATT
Found at i:94719899 original size:17 final size:18
Alignment explanation
Indices: 94719856--94719899 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
94719846 ATCTATATCA
94719856 ATATT-AAACAATATATT
1 ATATTAAAACAATATATT
94719873 ATAAATTAAAACAATAT-TT
1 AT--ATTAAAACAATATATT
94719892 ATATTAAA
1 ATATTAAA
94719900 TAGTAATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
17 8 0.33
19 7 0.29
20 9 0.38
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (18 bp):
ATATTAAAACAATATATT
Found at i:94722917 original size:30 final size:30
Alignment explanation
Indices: 94722881--94722979 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
94722871 CTAGCCTTTG
94722881 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
94722911 CCACCACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* * *
94722941 CCATCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
94722971 CCACCACCA
1 CCACCACCA
94722980 CTTGTACCTA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.25, C:0.49, G:0.06, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:94723482 original size:23 final size:23
Alignment explanation
Indices: 94723445--94723572 Score: 91
Period size: 23 Copynumber: 5.5 Consensus size: 23
94723435 TTTTTTTTGT
*
94723445 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATACTA
* *
94723468 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATACTA
** * *
94723490 TATTAGGTATATTCTAAATTCTA
1 TATTATATATATTCTTAATACTA
* *
94723513 TATTACATATATATATT-ATACTA
1 TATTATATATAT-TCTTAATACTA
* *
94723536 TTTTATGTATATATCTTTAATACTA
1 TATTATATATAT-TC-TTAATACTA
*
94723561 TATTATTTATAT
1 TATTATATATAT
94723573 ATATATTTTT
Statistics
Matches: 81, Mismatches: 19, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
22 17 0.21
23 40 0.49
24 8 0.10
25 16 0.20
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.55
Consensus pattern (23 bp):
TATTATATATATTCTTAATACTA
Found at i:94723549 original size:27 final size:26
Alignment explanation
Indices: 94723519--94723579 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 26
94723509 TCTATATTAC
*
94723519 ATATATATATT-ATACTATTTTATGT
1 ATATATATATTAATACTATATTATGT
* *
94723544 ATATATCT-TTAATACTATATTATTT
1 ATATATATATTAATACTATATTATGT
94723569 ATATATATATT
1 ATATATATATT
94723580 TTTTCTACAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 2 0.07
25 26 0.87
26 2 0.07
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.56
Consensus pattern (26 bp):
ATATATATATTAATACTATATTATGT
Found at i:94723577 original size:29 final size:28
Alignment explanation
Indices: 94723537--94723646 Score: 97
Period size: 29 Copynumber: 4.0 Consensus size: 28
94723527 ATTATACTAT
94723537 TTTATGTATATATCTTTAATACTATATTA
1 TTTATGTATATAT-TTTAATACTATATTA
* ** *
94723566 TTTATATATATATTTTTTCTAC-ATGTTA
1 TTTATGTATATA-TTTTAATACTATATTA
94723594 TCTTATGTATATATTTTAAT--TATATTA
1 T-TTATGTATATATTTTAATACTATATTA
* *
94723621 TGTATGTAT-T-TTTT-ACACTATATTA
1 TTTATGTATATATTTTAATACTATATTA
94723646 T
1 T
94723647 GTACATATTT
Statistics
Matches: 66, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
23 1 0.02
24 4 0.06
25 9 0.14
26 7 0.11
27 6 0.09
28 11 0.17
29 27 0.41
30 1 0.02
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.58
Consensus pattern (28 bp):
TTTATGTATATATTTTAATACTATATTA
Found at i:94723625 original size:80 final size:82
Alignment explanation
Indices: 94723520--94723694 Score: 187
Period size: 80 Copynumber: 2.2 Consensus size: 82
94723510 CTATATTACA
* * * * * *
94723520 TATATATATTATACTATTTTATGTATATATCTTTAATACTATATTATTTATATATATATTTTTTC
1 TATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATAT-T-TTTTTTA
*
94723585 TA-C-ATGTTAT-CTTATG
64 TATCTATGTTATACATATG
* * * *
94723601 TATATATTTTA-ATTATATTATGTATGTATTTTTTACACTATATTATGTACATATTTTTTTTATA
1 TATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTTATA
*
94723665 TCTATTTTATACATATG
66 TCTATGTTATACATATG
*
94723682 TATATATTATATA
1 TATATATTTTATA
94723695 TATCTTAACA
Statistics
Matches: 77, Mismatches: 13, Indels: 7
0.79 0.13 0.07
Matches are distributed among these distances:
78 8 0.10
79 2 0.03
80 41 0.53
81 25 0.32
82 1 0.01
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (82 bp):
TATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTTATA
TCTATGTTATACATATG
Found at i:94723647 original size:25 final size:24
Alignment explanation
Indices: 94723597--94723659 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
94723587 CATGTTATCT
*
94723597 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
94723623 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-ACTATATTATG
**
94723648 TACATATTTTTT
1 TATGTATTTTTT
94723660 TTATATCTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:94723749 original size:25 final size:24
Alignment explanation
Indices: 94723721--94723776 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
94723711 GTTATATTTT
*
94723721 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
94723746 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
94723769 CACTATTA
1 CACTATTA
94723777 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:94725832 original size:24 final size:24
Alignment explanation
Indices: 94725805--94725889 Score: 75
Period size: 24 Copynumber: 3.6 Consensus size: 24
94725795 ATAATTAATA
94725805 AAGATCATTCATGTATATTCAACC
1 AAGATCATTCATGTATATTCAACC
* ** *
94725829 AAGACCATTCACATATATTC-ACTT
1 AAGATCATTCATGTATATTCAAC-C
* * *
94725853 AAGGTCATT-ATGTATATTTAATC
1 AAGATCATTCATGTATATTCAACC
*
94725876 AAAATCATTCATGT
1 AAGATCATTCATGT
94725890 GTACTTGCAT
Statistics
Matches: 45, Mismatches: 13, Indels: 6
0.70 0.20 0.09
Matches are distributed among these distances:
23 16 0.36
24 29 0.64
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (24 bp):
AAGATCATTCATGTATATTCAACC
Found at i:94727625 original size:86 final size:81
Alignment explanation
Indices: 94727485--94727652 Score: 282
Period size: 86 Copynumber: 2.0 Consensus size: 81
94727475 GACTTTCAGT
94727485 ACGCACCACTTGTACCTTAACTAATTGACCAATTAATAGAATCTATTAATTCATTATTCACTATT
1 ACGCACCACTTGTACCTTAACTAATTGACCAATTAATAGAATCTATTAATTCATTATTCACTATT
94727550 ATATTATATCTAACTC
66 ATATTATATCTAACTC
94727566 ACGCACCACTTGTACCTTAACTAAACTAATTGACCAATTAATAGAATCTATTAATTCATTATTCA
1 ACGCACCACTTGTACC-T---T-AACTAATTGACCAATTAATAGAATCTATTAATTCATTATTCA
*
94727631 CTATTATATTATATTTAACTC
61 CTATTATATTATATCTAACTC
94727652 A
1 A
94727653 TATATATCAA
Statistics
Matches: 81, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
81 16 0.20
82 1 0.01
85 1 0.01
86 63 0.78
ACGTcount: A:0.37, C:0.20, G:0.05, T:0.38
Consensus pattern (81 bp):
ACGCACCACTTGTACCTTAACTAATTGACCAATTAATAGAATCTATTAATTCATTATTCACTATT
ATATTATATCTAACTC
Found at i:94729856 original size:38 final size:38
Alignment explanation
Indices: 94729814--94729931 Score: 110
Period size: 38 Copynumber: 3.1 Consensus size: 38
94729804 CAATGAGTCA
* **
94729814 ATAACCATTTCCATGCTGCCATTTCGTACAGCCAGTAG
1 ATAACCATTTCCATGCTGCCACTTCAAACAGCCAGTAG
* * * * *
94729852 ATAACCATTTTCATGGTGTCACTTCAAAGAGTCAGTAG
1 ATAACCATTTCCATGCTGCCACTTCAAACAGCCAGTAG
* *** * *
94729890 ATAACCATTTCCATGGTGTTGCTCCAAAGAGCCAGTAG
1 ATAACCATTTCCATGCTGCCACTTCAAACAGCCAGTAG
94729928 ATAA
1 ATAA
94729932 ATATTTTCAT
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 67 1.00
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (38 bp):
ATAACCATTTCCATGCTGCCACTTCAAACAGCCAGTAG
Found at i:94731920 original size:28 final size:26
Alignment explanation
Indices: 94731877--94731930 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 26
94731867 TATTTGTTTT
*
94731877 TTTATTTCCAAAAATAAACATTTCAA
1 TTTATTTCCAAAAATAAACATCTCAA
*
94731903 TTTATTTCCAATTAAATAATCATCTCAA
1 TTTATTTCCAA--AAATAAACATCTCAA
94731931 CCCAATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 11 0.46
28 13 0.54
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.41
Consensus pattern (26 bp):
TTTATTTCCAAAAATAAACATCTCAA
Found at i:94732165 original size:57 final size:57
Alignment explanation
Indices: 94732089--94732218 Score: 158
Period size: 57 Copynumber: 2.3 Consensus size: 57
94732079 CATTTCCAGG
* * *
94732089 TCATTT-TTCATTTTTATTTTCATTTTAGACAAAACCA-AATTCATTTCCAAATGGTTC
1 TCATTTCTCCATTTTCATTTTCATTTTAGACAAAACCATAA-T-ATTTCCAAATCGTTC
* * * *
94732146 T-ATTTCTCCATTTTCATTTTCATTTTGGAGAAAACCATAATATTTTCAAATCTTTC
1 TCATTTCTCCATTTTCATTTTCATTTTAGACAAAACCATAATATTTCCAAATCGTTC
94732202 TCATTTCTCCATTTTCA
1 TCATTTCTCCATTTTCA
94732219 CCATTTCTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
56 17 0.27
57 44 0.70
58 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.05, T:0.48
Consensus pattern (57 bp):
TCATTTCTCCATTTTCATTTTCATTTTAGACAAAACCATAATATTTCCAAATCGTTC
Found at i:94733197 original size:140 final size:140
Alignment explanation
Indices: 94732896--94733314 Score: 409
Period size: 140 Copynumber: 3.0 Consensus size: 140
94732886 AGGCTTAAGA
* * * * * * *
94732896 CGACACTTTTGGGCCAACATTTTCCTAATTGTCGGGATAAACTTGCCAACATACGCTTTGGCCAG
1 CGACACATTTGGGCCGACACTTTCCTAAATGTTGGGATAAACTTGCCGACATACGCTTTGGCCAA
* ** * *
94732961 CTCTCTG-ATAAGAGTCAGGATATGCATGCCTAA-AGCAACCCTTAAATAAGTGTCAGCTTTGAC
66 CTCTTTGTATAAG-GTTTGGATATGCATGCCTAAGAGCAACCCTTAAAAAAGGGTCAGCTTTGAC
* *
94733024 TAACACTATGG
130 CAACACTATGC
* * * * * *
94733035 CGACACTTTTGGGCCGATACTTTCCTCAGTGTTGGGATAAACTTACCGGCATACGCTTTGGCCAA
1 CGACACATTTGGGCCGACACTTTCCTAAATGTTGGGATAAACTTGCCGACATACGCTTTGGCCAA
* ** * *
94733100 CTCTTTGTATAAGGTTTGGAATATGCATGCCTAAGA-TAATGCTTAAAAAAGGGT-TGACTTTGT
66 CTCTTTGTATAAGGTTTGG-ATATGCATGCCTAAGAGCAACCCTTAAAAAAGGGTCAG-CTTTGA
94733163 CCAACACTATGC
129 CCAACACTATGC
* * * *
94733175 CTACACATTTGGGTCGACACTTTCCTAAATGTTGGGATAGACTTGCTGACATACGCTTTGGCCAA
1 CGACACATTTGGGCCGACACTTTCCTAAATGTTGGGATAAACTTGCCGACATACGCTTTGGCCAA
* * * ** * * * *
94733240 ATCTTTGTATAAGGGTTGGGATATGCATGACTAAG-GCAACAATTAAATAAGAGTC-GATTTTGT
66 CTCTTTGTATAA-GGTTTGGATATGCATGCCTAAGAGCAACCCTTAAAAAAGGGTCAG-CTTTGA
94733303 CCAACACTATGC
129 CCAACACTATGC
94733315 TGACTTTTGT
Statistics
Matches: 231, Mismatches: 42, Indels: 13
0.81 0.15 0.05
Matches are distributed among these distances:
139 66 0.29
140 158 0.68
141 7 0.03
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (140 bp):
CGACACATTTGGGCCGACACTTTCCTAAATGTTGGGATAAACTTGCCGACATACGCTTTGGCCAA
CTCTTTGTATAAGGTTTGGATATGCATGCCTAAGAGCAACCCTTAAAAAAGGGTCAGCTTTGACC
AACACTATGC
Found at i:94735734 original size:35 final size:35
Alignment explanation
Indices: 94735695--94735927 Score: 252
Period size: 35 Copynumber: 6.5 Consensus size: 35
94735685 CCTTAGATGT
*
94735695 GTCTATCCCGACCTTTTTAAGGTTGCCTTAGACAA
1 GTCTATCCCAACCTTTTTAAGGTTGCCTTAGACAA
* *
94735730 GTCTATCCCAACCTTTTTAAAAGTTTACCTTAGACAA
1 GTCTATCCCAACCTTTTT--AAGGTTGCCTTAGACAA
* *
94735767 GGTCTATACCAACCTTTTTAAGGTTGCCTTAGACAG
1 -GTCTATCCCAACCTTTTTAAGGTTGCCTTAGACAA
94735803 GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAA
1 GTCTATCCCAACC-TTTTT-AAGGTTGCCTTAGACAA
* * * **
94735840 GGTCTATCCTAA-CTCTTTTAAGATTTCCTTAGACGG
1 -GTCTATCCCAACCT-TTTTAAGGTTGCCTTAGACAA
* * **
94735876 GTCTATCCCAACCTTTTTAAGGTTTCCCTAGACTG
1 GTCTATCCCAACCTTTTTAAGGTTGCCTTAGACAA
* *
94735911 GTCTGTCCCAACATTTT
1 GTCTATCCCAACCTTTT
94735928 ATAAATGTTG
Statistics
Matches: 170, Mismatches: 20, Indels: 16
0.83 0.10 0.08
Matches are distributed among these distances:
35 72 0.42
36 35 0.21
37 36 0.21
38 27 0.16
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (35 bp):
GTCTATCCCAACCTTTTTAAGGTTGCCTTAGACAA
Found at i:94735807 original size:73 final size:72
Alignment explanation
Indices: 94735695--94735895 Score: 287
Period size: 73 Copynumber: 2.8 Consensus size: 72
94735685 CCTTAGATGT
* * *
94735695 GTCTATCCCGACCTTTTTAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTAAAAGTTTACCT
1 GTCTAT-CCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTAAAAGGTTACCT
94735760 TAGACAAG
65 TAGACAAG
* *
94735768 GTCTATACCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAAAGGTTGCCT
1 GTCTAT-CCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTAAAAGGTTACCT
94735833 TAGACAAG
65 TAGACAAG
* * *
94735841 GTCTATCCTAA-CTCTTTTAAGATTTCCTTAGACGGGTCTATCCCAACCTTTTTAA
1 GTCTATCC-AACCT-TTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTAA
94735896 GGTTTCCCTA
Statistics
Matches: 116, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
72 4 0.03
73 112 0.97
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (72 bp):
GTCTATCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTAAAAGGTTACCTT
AGACAAG
Found at i:94735879 original size:108 final size:110
Alignment explanation
Indices: 94735695--94735939 Score: 322
Period size: 108 Copynumber: 2.3 Consensus size: 110
94735685 CCTTAGATGT
*
94735695 GTCTATCCCGACC-TTTTT-AAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTAAAAGTTTAC
1 GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTAAAAGTTTAC
*
94735758 CTTAGACAAGGTCTATACCAACCTTTTTAAGGTTGCCTTAGACAG
66 CTTAGACAAGGTCTATACCAACCTTTTTAAGGTTGCCCTAGACAG
* *
94735803 GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCTAA-CTCTTTTAAGA-TTT
1 GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAA-GTCTATCCCAACCT-TTTTAAAAGTTT
* * * *
94735866 -CCTTAGAC-GGGTCTATCCCAACCTTTTTAAGGTTTCCCTAGACTG
64 ACCTTAGACAAGGTCTATACCAACCTTTTTAAGGTTGCCCTAGACAG
* * * *
94735911 GTCTGTCCCAACATTTTATAAATGTTGCC
1 GTCTATCCCAACCTTTTTTAAAGGTTGCC
94735940 ATTGACTAGG
Statistics
Matches: 121, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
108 69 0.57
109 13 0.11
110 22 0.18
111 17 0.14
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (110 bp):
GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGTCTATCCCAACCTTTTTAAAAGTTTAC
CTTAGACAAGGTCTATACCAACCTTTTTAAGGTTGCCCTAGACAG
Found at i:94736209 original size:31 final size:31
Alignment explanation
Indices: 94736171--94736232 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
94736161 GTCACAAGCG
94736171 AATAAATCTATAAACAAATTCAAGATTTATT
1 AATAAATCTATAAACAAATTCAAGATTTATT
*
94736202 AATAAATCTATAAACGAATTCAAGATTTATT
1 AATAAATCTATAAACAAATTCAAGATTTATT
94736233 CTTATTAGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.35
Consensus pattern (31 bp):
AATAAATCTATAAACAAATTCAAGATTTATT
Found at i:94739140 original size:27 final size:27
Alignment explanation
Indices: 94739100--94739157 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
94739090 AGAGCATACG
* * *
94739100 TGGGTCAAAGCCCATTACAATATCATT
1 TGGGTCAAAGCCCATAACAAAATCAAT
94739127 TGGGTCACAA-CCCATAACAAAATCAAT
1 TGGGTCA-AAGCCCATAACAAAATCAAT
94739154 TGGG
1 TGGG
94739158 CCTAACCCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.24
Consensus pattern (27 bp):
TGGGTCAAAGCCCATAACAAAATCAAT
Found at i:94740030 original size:26 final size:27
Alignment explanation
Indices: 94739911--94740037 Score: 168
Period size: 27 Copynumber: 4.8 Consensus size: 27
94739901 GCCCTACAGG
* * *
94739911 GGTATTTCAATAATTTCACAAATTGG-
1 GGTATTTCGATAATTTTACAAACTGGA
94739937 GGTATTTCGATAATTTTACAAACTGGA
1 GGTATTTCGATAATTTTACAAACTGGA
* *
94739964 GGTATTTCGTTAATTTTACAAACTGGG
1 GGTATTTCGATAATTTTACAAACTGGA
*
94739991 GGTATTTCGATAATTTTACAAAC-GTA
1 GGTATTTCGATAATTTTACAAACTGGA
* *
94740017 GGTATTTTGGTAATTTTACAA
1 GGTATTTCGATAATTTTACAA
94740038 TCCGAGGTCT
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 43 0.48
27 47 0.52
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GGTATTTCGATAATTTTACAAACTGGA
Found at i:94740031 original size:53 final size:53
Alignment explanation
Indices: 94739911--94740037 Score: 175
Period size: 53 Copynumber: 2.4 Consensus size: 53
94739901 GCCCTACAGG
** * *
94739911 GGTATTTCAATAATTTCACAAATTGGGGTATTTCGATAATTTTACAAACTGGA
1 GGTATTTCGGTAATTTTACAAATGGGGGTATTTCGATAATTTTACAAACTGGA
* *
94739964 GGTATTTCGTTAATTTTACAAACTGGGGGTATTTCGATAATTTTACAAAC-GTA
1 GGTATTTCGGTAATTTTACAAA-TGGGGGTATTTCGATAATTTTACAAACTGGA
*
94740017 GGTATTTTGGTAATTTTACAA
1 GGTATTTCGGTAATTTTACAA
94740038 TCCGAGGTCT
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
53 40 0.61
54 26 0.39
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.40
Consensus pattern (53 bp):
GGTATTTCGGTAATTTTACAAATGGGGGTATTTCGATAATTTTACAAACTGGA
Found at i:94741478 original size:30 final size:31
Alignment explanation
Indices: 94741425--94741483 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 31
94741415 CTTGATTTTC
94741425 TCCCTAAATCACTCAACAACCAATTCAACTT
1 TCCCTAAATCACTCAACAACCAATTCAACTT
*
94741456 TCCCTGAAA-CACTC-ATAACCAATTCAAC
1 TCCCT-AAATCACTCAACAACCAATTCAAC
94741484 CTCAGAGTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 13 0.50
31 10 0.38
32 3 0.12
ACGTcount: A:0.39, C:0.36, G:0.02, T:0.24
Consensus pattern (31 bp):
TCCCTAAATCACTCAACAACCAATTCAACTT
Found at i:94743807 original size:27 final size:27
Alignment explanation
Indices: 94743769--94743871 Score: 136
Period size: 27 Copynumber: 3.8 Consensus size: 27
94743759 ATTGCCCTAC
94743769 AGGGGTATTTCGGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTTACAAACT
* *
94743796 AGGGTTATTTCGATAATTTTACAAAC-
1 AGGGGTATTTCGGTAATTTTACAAACT
* *
94743822 AGAGGGTATTTTGGTAATTTTACAAATT
1 AG-GGGTATTTCGGTAATTTTACAAACT
* *
94743850 GGGGGTATTTTGGTAATTTTAC
1 AGGGGTATTTCGGTAATTTTAC
94743872 GATCCGAGGT
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 2 0.03
27 64 0.96
28 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTCGGTAATTTTACAAACT
Found at i:94745827 original size:79 final size:82
Alignment explanation
Indices: 94745705--94745889 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
94745695 TTGAATGATG
* *
94745705 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAG-TCCCGAAGGCAA
*
94745768 TTGTGCGAGATACTA-AT
65 TTGTGCGAGATACTATAA
* * **
94745785 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCAAT
*
94745848 TGTGCGAGTTACTATAA
66 TGTGCGAGATACTATAA
*
94745865 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
94745890 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.62
80 34 0.37
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCAAT
TGTGCGAGATACTATAA
Found at i:94745896 original size:40 final size:40
Alignment explanation
Indices: 94745705--94745889 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
94745695 TTGAATGATG
* * * *
94745705 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
94745745 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
94745785 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
94745824 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
94745865 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
94745890 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 34 0.28
40 78 0.63
41 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:94745911 original size:79 final size:79
Alignment explanation
Indices: 94745705--94745922 Score: 194
Period size: 79 Copynumber: 2.7 Consensus size: 79
94745695 TTGAATGATG
** * * * ** *
94745705 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAAC-AAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCAA
*
94745768 TTGTGCGAGATACTAAT
63 TTGTGCGAGATACTAAA
** *
94745785 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTG
1 TCCGGGCTAAGCCCGAAGGCATTTGAACAAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTG
*
94745850 TGCGAGTTACTATAA
66 TGCGAGATACTA-AA
* * * *
94745865 T-CGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAACAAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
94745923 TACGTGATTT
Statistics
Matches: 117, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 1 0.01
79 72 0.62
80 44 0.38
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAACAAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTG
TGCGAGATACTAAA
Found at i:94751085 original size:68 final size:68
Alignment explanation
Indices: 94750993--94751150 Score: 298
Period size: 68 Copynumber: 2.3 Consensus size: 68
94750983 TTCACTTGGA
* *
94750993 ATCACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
94751058 CGT
66 CGT
94751061 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
94751126 CGT
66 CGT
94751129 ATCACACATGTGACCTAGCTAC
1 ATCACACATGTGACCTAGCTAC
94751151 TATATAGTAT
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 88 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
CGT
Found at i:94751183 original size:68 final size:67
Alignment explanation
Indices: 94750993--94751176 Score: 237
Period size: 68 Copynumber: 2.7 Consensus size: 67
94750983 TTCACTTGGA
* * * * *
94750993 ATCACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATATATATCT-ACGAAGCTCTCTTGTCTACATGGGATACATCC
94751058 CGT
65 CGT
* * *
94751061 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATATATATCT-ACGAAGCTCTCTTGTCTACATGGGATACATCC
94751126 CGT
65 CGT
94751129 ATCACACATGTGACCTAGCTACTATATAGTATCT-CGAAGC-CTTCTTGT
1 ATCACACATGTGACCTAGCTAC-ATATA-TATCTACGAAGCTC-TCTTGT
94751177 ACACATGATG
Statistics
Matches: 108, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
67 1 0.01
68 99 0.92
69 4 0.04
70 4 0.04
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.33
Consensus pattern (67 bp):
ATCACACATGTGACCTAGCTACATATATATCTACGAAGCTCTCTTGTCTACATGGGATACATCCC
GT
Found at i:94753436 original size:27 final size:27
Alignment explanation
Indices: 94753406--94753509 Score: 140
Period size: 27 Copynumber: 3.9 Consensus size: 27
94753396 TGCCCTACCG
*
94753406 GGGTATTTTGATAATTTTACAAACTGA
1 GGGTATTTCGATAATTTTACAAACTGA
94753433 GGGTATTTCGATAATTTTACAAACTG-
1 GGGTATTTCGATAATTTTACAAACTGA
* *
94753459 GGGCTATTTCAATAATTTTGCAAACTGA
1 GGG-TATTTCGATAATTTTACAAACTGA
*
94753487 GGGTATTT-TAGTAATTTTACAAA
1 GGGTATTTCGA-TAATTTTACAAA
94753510 TTAGGGGTCT
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
26 4 0.06
27 62 0.90
28 3 0.04
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAACTGA
Found at i:94753528 original size:27 final size:26
Alignment explanation
Indices: 94753405--94753528 Score: 133
Period size: 27 Copynumber: 4.6 Consensus size: 26
94753395 TTGCCCTACC
94753405 GGGGTATTTTGATAATTTTACAAACT
1 GGGGTATTTTGATAATTTTACAAACT
*
94753431 GAGGGTATTTCGATAATTTTACAAACT
1 G-GGGTATTTTGATAATTTTACAAACT
** *
94753458 GGGGCTATTTCAATAATTTTGCAAACT
1 GGGG-TATTTTGATAATTTTACAAACT
*
94753485 GAGGGTATTTT-AGTAATTTTACAAATT
1 G-GGGTATTTTGA-TAATTTTACAAACT
* *
94753512 AGGGGTCTTTTTATAAT
1 -GGGGTATTTTGATAAT
94753529 ATCCCGAATT
Statistics
Matches: 85, Mismatches: 7, Indels: 11
0.83 0.07 0.11
Matches are distributed among these distances:
26 5 0.06
27 75 0.88
28 5 0.06
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (26 bp):
GGGGTATTTTGATAATTTTACAAACT
Found at i:94755220 original size:100 final size:100
Alignment explanation
Indices: 94755040--94755227 Score: 322
Period size: 100 Copynumber: 1.9 Consensus size: 100
94755030 TATTGTGAGG
* *
94755040 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
94755105 AAGTGCAGGCCACTATGCATACCCGAAAACTGTGA
66 AAGTGCAGGCCACTATGCATACCCGAAAACTGTGA
*
94755140 TCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
* * *
94755205 AAGTGTAGGCTACTATGCGTACC
66 AAGTGCAGGCCACTATGCATACC
94755228 AGATAGCTTC
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCCACTATGCATACCCGAAAACTGTGA
Found at i:94755227 original size:49 final size:49
Alignment explanation
Indices: 94755045--94755232 Score: 223
Period size: 49 Copynumber: 3.8 Consensus size: 49
94755035 TGAGGTCACG
*
94755045 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * * * * * * *
94755094 TGTGTAGTACTAAGTGCAGGCCACTATGCATACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-T-TGGTCGCA
* ** *
94755145 TGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* *
94755194 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
94755233 GCTTCAGCTA
Statistics
Matches: 110, Mismatches: 27, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
49 72 0.65
50 2 0.02
51 36 0.33
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:94758517 original size:3 final size:3
Alignment explanation
Indices: 94758509--94758539 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
94758499 GATATAGTTT
94758509 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
94758540 CAAAAGCAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:94763157 original size:50 final size:48
Alignment explanation
Indices: 94763035--94763260 Score: 179
Period size: 47 Copynumber: 4.8 Consensus size: 48
94763025 GTATAATGTC
*
94763035 GATGCCATGTCCAAGACATGGTCTTACACT-AGCTCTCACGTTAAGTCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCACGTTAAGTCA
* * **
94763083 -ACGCCATGTCCCAGATATGGTCTTACACTGACTCTCACGTATTCGTGCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGT-TAAGT-CA
* * *
94763132 GATGCCATGTCCCAGACATGGTCTTATACTGACACATCATG-T-AG--A
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTC-TCACGTTAAGTCA
*
94763177 TGATG-CATGTCCCAAACAT-GTCTTACACT-AGCTCT--CGTCTCAATGTC-
1 -GATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCACGT-T-AA-GTCA
* * *
94763224 GATGCCATGTCCCAAACATGGTCTTAGACTGGCTCTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTC
94763261 GTAATGTGAC
Statistics
Matches: 143, Mismatches: 17, Indels: 35
0.73 0.09 0.18
Matches are distributed among these distances:
41 1 0.01
43 3 0.02
44 11 0.08
45 15 0.10
46 9 0.06
47 49 0.34
48 18 0.13
49 3 0.02
50 30 0.21
51 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTTAAGTCA
Found at i:94763280 original size:47 final size:47
Alignment explanation
Indices: 94763029--94763302 Score: 142
Period size: 47 Copynumber: 5.8 Consensus size: 47
94763019 CATAGGGTAT
* * *
94763029 AATGTCGATGCCATGT-CCAAGACATGGTCTTACACTAGCTCTCACGTT
1 AATGTCGATGACATGTCCCAA-ACATGGTCTTACACTAGCTCTCGC-TC
* * * * * *
94763077 AA-GTCAACGCCATGTCCCAGATATGGTCTTACACT-GACTCTCACGT-
1 AATGTCGATGACATGTCCCAAACATGGTCTTACACTAG-CTCTCGC-TC
* * * * * * *
94763123 ATTCGTGCAGATGCCATGTCCCAGACATGGTCTTATACT-G-ACAC-ATC
1 AAT-GT-C-GATGACATGTCCCAAACATGGTCTTACACTAGCTCTCGCTC
*
94763170 -ATGTAGATGATGCATGTCCCAAACAT-GTCTTACACTAGCTCTCGTCTC
1 AATGTCGATGA--CATGTCCCAAACATGGTCTTACACTAGCTCTCG-CTC
* * *
94763218 AATGTCGATGCCATGTCCCAAACATGGTCTTAGACTGGCTCTCG-T-
1 AATGTCGATGACATGTCCCAAACATGGTCTTACACTAGCTCTCGCTC
* *
94763263 AATGTGACCGAT-ACATGTCCCAGACAT-GTGTTACACTAGC
1 AATGT---CGATGACATGTCCCAAACATGGTCTTACACTAGC
94763303 ACACAAATGA
Statistics
Matches: 179, Mismatches: 29, Indels: 38
0.73 0.12 0.15
Matches are distributed among these distances:
43 4 0.02
44 9 0.05
45 21 0.12
46 17 0.09
47 61 0.34
48 31 0.17
49 9 0.05
50 27 0.15
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (47 bp):
AATGTCGATGACATGTCCCAAACATGGTCTTACACTAGCTCTCGCTC
Found at i:94763290 original size:94 final size:92
Alignment explanation
Indices: 94763132--94763302 Score: 220
Period size: 94 Copynumber: 1.8 Consensus size: 92
94763122 TATTCGTGCA
* * * *
94763132 GATGCCATGTCCCAGACATGGTCTTATACTGACACATCATGTAGATGATGCATGTCCCAAACATG
1 GATGCCATGTCCCAAACATGGTCTTAGACTGACACATCATGTAGACGATACATGTCCCAAACATG
94763197 TCTTACACTAGCTCTCGTCTCAATGTC
66 TCTTACACTAGCTCTCGTCTCAATGTC
* * *
94763224 GATGCCATGTCCCAAACATGGTCTTAGACTGGCTC-TCGTAATGT-GACCGATACATGTCCCAGA
1 GATGCCATGTCCCAAACATGGTCTTAGACTGACACATC---ATGTAGA-CGATACATGTCCCAAA
*
94763287 CATGTGTTACACTAGC
62 CATGTCTTACACTAGC
94763303 ACACAAATGA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
91 2 0.03
92 31 0.46
93 2 0.03
94 32 0.48
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (92 bp):
GATGCCATGTCCCAAACATGGTCTTAGACTGACACATCATGTAGACGATACATGTCCCAAACATG
TCTTACACTAGCTCTCGTCTCAATGTC
Found at i:94776495 original size:46 final size:46
Alignment explanation
Indices: 94776308--94776520 Score: 157
Period size: 46 Copynumber: 4.5 Consensus size: 46
94776298 GTGAGCTAGA
* * * * * *
94776308 GTAAGACATGTCTGGGACATGCATCGGCCA-TATTATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCTACGA-GACGATAGCGAGT
* * * ** *
94776354 ATAAGACCATGTCTGAGACATGGCATCGG-TATTGAGACGAGGGCTAGT
1 GTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGACGATAGCGAGT
* * *
94776402 GTGAGACATGTCTGGGACAAGCATCGGCCT-CGAGGCG-TAAGCGAGT
1 GTAAGACATGTCTGGGACATGCATCGG-CTACGAGACGAT-AGCGAGT
*
94776448 GTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTC-AGT
1 GTAAGACATGTCTGGGACATGCATCGGCTACGAGACGATAG-CGAGT
*
94776494 GTAAGACCATGTCTAGGACATGGCATC
1 GTAAGA-CATGTCTGGGACAT-GCATC
94776521 AGCTTGATAT
Statistics
Matches: 133, Mismatches: 22, Indels: 22
0.75 0.12 0.12
Matches are distributed among these distances:
45 2 0.02
46 63 0.47
47 41 0.31
48 26 0.20
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (46 bp):
GTAAGACATGTCTGGGACATGCATCGGCTACGAGACGATAGCGAGT
Found at i:94776560 original size:140 final size:140
Alignment explanation
Indices: 94776308--94776560 Score: 307
Period size: 140 Copynumber: 1.8 Consensus size: 140
94776298 GTGAGCTAGA
* *
94776308 GTAAGACATGTCTGGGACATGCATCGGCCATATTATGAGAGCCAGTATAAGACCATGTCTGAGAC
1 GTAAGACATGTCTGGGACATGCATCGGCCAGATGATGAGAGCCAGTATAAGACCATGTCTGAGAC
* * * * * *
94776373 ATGGCATCGGTATTGAGACGAGGGCTAGTGTGAGACATGTCTGGGACAAGCATCGGCCTCGAGGC
66 ATGGCATCAGTATTGAGACGAGAGCAAGTATAAGACATGTCTAGGACAAGCATCGGCCTCGAGGC
94776438 GTAAGCGAGT
131 GTAAGCGAGT
* * * *
94776448 GTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCT-AGG
1 GTAAGACATGTCTGGGACATGCATCGGCCA-GATGATGAGAGCCAGTATAAGACCATGTCTGA-G
* * *
94776511 ACATGGCATCAG-CTTGATA-TATGAGCAAGTATAAGACCATGTCTAGGACA
64 ACATGGCATCAGTATTGAGACGA-GAGCAAGTATAAGA-CATGTCTAGGACA
94776561 TGGCATTGGC
Statistics
Matches: 94, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
138 1 0.01
139 16 0.17
140 76 0.81
141 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (140 bp):
GTAAGACATGTCTGGGACATGCATCGGCCAGATGATGAGAGCCAGTATAAGACCATGTCTGAGAC
ATGGCATCAGTATTGAGACGAGAGCAAGTATAAGACATGTCTAGGACAAGCATCGGCCTCGAGGC
GTAAGCGAGT
Found at i:94779610 original size:47 final size:48
Alignment explanation
Indices: 94779412--94779678 Score: 191
Period size: 47 Copynumber: 5.7 Consensus size: 48
94779402 TATAATGCTG
* *
94779412 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTTAAT-TCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCAATGCCA
* * * * ** *
94779459 ACGCAATGTCCCAGATATGGTCTTACACT-GACTCTCACGTATCCGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCA--TGTCAATGCCA
* * * * *
94779509 ATGGCATGCCCCAGACATGGTCTTATACTA-ATACATCATGT--A-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCT-C-TCATGTCAATGCCA
* *
94779555 ATG-CATGTCCCGGACAT-GTCTTACACTAGCTCTCATCTCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCAATGCCA
* * *
94779601 ATGCCATGTCCCAGACATGGTCTTACATTGGCTCTC--GT-AATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCAA--T-GCCA
*
94779649 ATG-CATGTCCTAGACAT-GTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
94779679 ACACAAATGA
Statistics
Matches: 172, Mismatches: 32, Indels: 33
0.73 0.14 0.14
Matches are distributed among these distances:
43 5 0.03
44 11 0.06
45 16 0.09
46 26 0.15
47 59 0.34
48 21 0.12
49 6 0.03
50 25 0.15
51 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCAATGCCA
Found at i:94780117 original size:19 final size:20
Alignment explanation
Indices: 94780093--94780132 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
94780083 ACTAGAAGCA
*
94780093 TCCCACAATTCTCAT-TATT
1 TCCCACAATTATCATATATT
*
94780112 TCCCACATTTATCATATATT
1 TCCCACAATTATCATATATT
94780132 T
1 T
94780133 TACAGCTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.45
Consensus pattern (20 bp):
TCCCACAATTATCATATATT
Found at i:94781936 original size:20 final size:21
Alignment explanation
Indices: 94781908--94781946 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
94781898 ACAAAGATGA
*
94781908 CTTATAATT-TAATTTAATTT
1 CTTAGAATTATAATTTAATTT
*
94781928 CTTAGAATTATTATTTAAT
1 CTTAGAATTATAATTTAAT
94781947 GAACTAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (21 bp):
CTTAGAATTATAATTTAATTT
Found at i:94782150 original size:8 final size:9
Alignment explanation
Indices: 94782114--94782147 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
94782104 TTAATTCAGA
94782114 AATTAATTT
1 AATTAATTT
*
94782123 AGTTAATTT
1 AATTAATTT
94782132 AATTAA-TT
1 AATTAATTT
94782140 AATTAATT
1 AATTAATT
94782148 AATATTTTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (9 bp):
AATTAATTT
Found at i:94797541 original size:27 final size:27
Alignment explanation
Indices: 94797480--94797532 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
94797470 GAAGATGGAT
94797480 ACATTTTTGCTTTGATTTTCTCTTTTC
1 ACATTTTTGCTTTGATTTTCTCTTTTC
94797507 ACATTTTTGCTTTGATTTTCTCTTTT
1 ACATTTTTGCTTTGATTTTCTCTTTT
94797533 TATTCTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.11, C:0.17, G:0.08, T:0.64
Consensus pattern (27 bp):
ACATTTTTGCTTTGATTTTCTCTTTTC
Found at i:94804819 original size:27 final size:27
Alignment explanation
Indices: 94804789--94805188 Score: 387
Period size: 27 Copynumber: 14.7 Consensus size: 27
94804779 TTTAACTACA
* *
94804789 AGGGTATTTCGATAACTTTATAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
94804816 AGGGTGTTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
94804843 AGGGTATTTTGGTAATTTTATAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
94804870 ATGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
94804897 AGGGTGTTTCGATAATTTCACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* **
94804924 GGGGTATTTCGATAATTTTACAAATTA
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
94804951 AAGGTATTT-TAGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
94804977 AGGGTATTTCGGTAATTTTACAAACCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
94805004 AGGGTATTTCAATAATTTCAC-AATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
94805030 AGGGTATTTCGGTAATTTTATAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
94805057 AGGTTATTTCGATATTTCAGTATTTTACAAATCG
1 AGGGTATTTCG--A--T-A--ATTTTACAAATCG
* *
94805091 AGGGTATTTCAATAATTTCAC-AATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
94805117 AGGGCATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
94805144 AGGGTGTTTCAAAAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
94805171 AGCGTATTTC-AGTAATTT
1 AGGGTATTTCGA-TAATTT
94805189 CTTTTTATTA
Statistics
Matches: 302, Mismatches: 58, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
26 63 0.21
27 213 0.71
29 1 0.00
30 1 0.00
31 1 0.00
32 2 0.01
34 21 0.07
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:94804999 original size:53 final size:53
Alignment explanation
Indices: 94804811--94805189 Score: 339
Period size: 53 Copynumber: 7.0 Consensus size: 53
94804801 TAACTTTATA
* * * * *
94804811 AATCGAGGGTGTTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTATA
1 AATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCA-C
* * * *
94804865 AATCGATGGTATTTCGATAATTTTACAAATCGAGGGT-GTTTCGATAATTTCAC
1 AATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAG-TAATTTCAC
* * ** *
94804918 AAATCGGGGGTATTTCGATAATTTTACAAATTAAAGGTATTTTAGTAATTTCAC
1 -AATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC
* * *
94804972 AATCGAGGGTATTTCGGTAATTTTACAAACCGAGGGTATTTCAATAATTTCAC
1 AATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC
* * * *
94805025 AATCGAGGGTATTTCGGTAATTTTATAAATCGAGGTTATTTCGATATTTCAGTATTTTAC
1 AATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTT---TA-GT-A--ATTTCAC
** * * * *
94805085 AAATCGAGGGTATTTCAATAATTTCAC-AATCGAGGGCATTTTGGTAATTTTAC
1 -AATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC
* *** * *
94805138 AAATCGAGGGTGTTTCAAAAATTTTACAAATCGAGCGTATTTCAGTAATTTC
1 -AATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTC
94805190 TTTTTATTAT
Statistics
Matches: 268, Mismatches: 45, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
53 118 0.44
54 100 0.37
55 5 0.02
56 2 0.01
57 2 0.01
58 1 0.00
60 18 0.07
61 22 0.08
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.38
Consensus pattern (53 bp):
AATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC
Found at i:94805083 original size:34 final size:35
Alignment explanation
Indices: 94805034--94805110 Score: 102
Period size: 34 Copynumber: 2.2 Consensus size: 35
94805024 CAATCGAGGG
* * * *
94805034 TATTTCGGTAATTTTATAAATCGAGGTTATTTCGA
1 TATTTCAGTAATTTTACAAATCGAGGGTATTTCAA
94805069 TATTTCAGT-ATTTTACAAATCGAGGGTATTTCAA
1 TATTTCAGTAATTTTACAAATCGAGGGTATTTCAA
94805103 TAATTTCA
1 T-ATTTCA
94805111 CAATCGAGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
34 23 0.62
35 14 0.38
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.44
Consensus pattern (35 bp):
TATTTCAGTAATTTTACAAATCGAGGGTATTTCAA
Found at i:94805093 original size:87 final size:88
Alignment explanation
Indices: 94804981--94805146 Score: 280
Period size: 87 Copynumber: 1.9 Consensus size: 88
94804971 CAATCGAGGG
* *
94804981 TATTTCGGTAATTTTACAAACCGAGGGTATTTCAATAATTTCACAATCGAGGGTATTTCGGTAAT
1 TATTTCAGTAATTTTACAAACCGAGGGTATTTCAATAATTTCACAATCGAGGGCATTTCGGTAAT
*
94805046 TTTATAAATCGAGGTTATTTCGA
66 TTTACAAATCGAGGTTATTTCGA
* *
94805069 TATTTCAGT-ATTTTACAAATCGAGGGTATTTCAATAATTTCACAATCGAGGGCATTTTGGTAAT
1 TATTTCAGTAATTTTACAAACCGAGGGTATTTCAATAATTTCACAATCGAGGGCATTTCGGTAAT
94805133 TTTACAAATCGAGG
66 TTTACAAATCGAGG
94805147 GTGTTTCAAA
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
87 65 0.89
88 8 0.11
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (88 bp):
TATTTCAGTAATTTTACAAACCGAGGGTATTTCAATAATTTCACAATCGAGGGCATTTCGGTAAT
TTTACAAATCGAGGTTATTTCGA
Found at i:94805537 original size:28 final size:28
Alignment explanation
Indices: 94805505--94805596 Score: 112
Period size: 28 Copynumber: 3.3 Consensus size: 28
94805495 TGGCCCCTTT
* * * *
94805505 AGGCCCAATCTCGTTCACATGTCCTATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
94805533 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
* *
94805561 AGGCCCAATCACATTCATATAGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
94805589 AGCCCCAA
1 AGGCCCAA
94805597 CTACTTCCCA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.28, C:0.37, G:0.13, T:0.22
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:94810039 original size:90 final size:90
Alignment explanation
Indices: 94809884--94810064 Score: 299
Period size: 90 Copynumber: 2.0 Consensus size: 90
94809874 AACCCGACCC
* * *
94809884 AACCACATCCCTAATTATTGATGAAGGTTTTAGGGATTGTACAACCGCTCCTTCCTTCATCGTCT
1 AACCACATCCCTAATAATTGATAAAGGTTTTAGGGATTGTACAACCACTCCTTCCTTCATCGTCT
*
94809949 TGCTTTTTAATTGATGAAAGCAAAT
66 TGCTTTTCAATTGATGAAAGCAAAT
* * *
94809974 AACCACATCCCTAATAATTGATAAAGGTTTTAGGGATTGTACAACTACTTCTTCCTTCATTGTCT
1 AACCACATCCCTAATAATTGATAAAGGTTTTAGGGATTGTACAACCACTCCTTCCTTCATCGTCT
94810039 TGCTTTTCAATTGATGAAAGCAAAT
66 TGCTTTTCAATTGATGAAAGCAAAT
94810064 A
1 A
94810065 TCATGAGTTA
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 84 1.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (90 bp):
AACCACATCCCTAATAATTGATAAAGGTTTTAGGGATTGTACAACCACTCCTTCCTTCATCGTCT
TGCTTTTCAATTGATGAAAGCAAAT
Found at i:94810132 original size:21 final size:21
Alignment explanation
Indices: 94810108--94810260 Score: 61
Period size: 21 Copynumber: 7.4 Consensus size: 21
94810098 TTTTTTCCTG
94810108 AATCGATTGTTTGTTGTTTTA
1 AATCGATTGTTTGTTGTTTTA
*
94810129 AATC-AGTTCTTT-TCT-TCTTT-
1 AATCGA-TTGTTTGT-TGT-TTTA
* * * *
94810149 GATCAATTTTTTTTTGTTTTA
1 AATCGATTGTTTGTTGTTTTA
* *
94810170 AATCGATT-TTTGCTT-CTTTG
1 AATCGATTGTTTG-TTGTTTTA
* *
94810190 AATCAATTGCTTGTTGTTTTA
1 AATCGATTGTTTGTTGTTTTA
* * *
94810211 AATTGATTCTTT-TCT-TCTTTG
1 AATCGATTGTTTGT-TGT-TTTA
* *
94810232 AATCAATTGTTTGTTGCTTTA
1 AATCGATTGTTTGTTGTTTTA
*
94810253 AATAGATT
1 AATCGATT
94810261 CTTGGCTTCT
Statistics
Matches: 94, Mismatches: 24, Indels: 28
0.64 0.16 0.19
Matches are distributed among these distances:
20 32 0.34
21 61 0.65
22 1 0.01
ACGTcount: A:0.20, C:0.10, G:0.12, T:0.57
Consensus pattern (21 bp):
AATCGATTGTTTGTTGTTTTA
Found at i:94810238 original size:42 final size:42
Alignment explanation
Indices: 94810106--94810358 Score: 278
Period size: 45 Copynumber: 5.9 Consensus size: 42
94810096 ATTTTTTTCC
* *
94810106 TGAATCGATTGTTTGTTGTTTTAAATCAG-TTCTTTTCTTCTT
1 TGAATCAATTGTTTGTTGTTTTAAAT-AGATTCTTTGCTTCTT
* * *
94810148 TG-ATCAATTTTTTTTTGTTTTAAATCGATT-TTTGCTTCTT
1 TGAATCAATTGTTTGTTGTTTTAAATAGATTCTTTGCTTCTT
* * *
94810188 TGAATCAATTGCTTGTTGTTTTAAATTGATTCTTTTCTTCTT
1 TGAATCAATTGTTTGTTGTTTTAAATAGATTCTTTGCTTCTT
* *
94810230 TGAATCAATTGTTTGTTGCTTTAAATAGATTCTTGGCTTCTT
1 TGAATCAATTGTTTGTTGTTTTAAATAGATTCTTTGCTTCTT
* * *
94810272 TAAACCAATTCATTATTGTTGTTTTAAATAGATTCTTTGCTTCTT
1 TGAATCAATT--GT-TTGTTGTTTTAAATAGATTCTTTGCTTCTT
* **
94810317 TGAATCAATTCATTAATGTTGTTTTAAATCTATTCTTTGCTT
1 TGAATCAATT-GTT--TGTTGTTTTAAATAGATTCTTTGCTT
94810359 ATTTAATTGA
Statistics
Matches: 177, Mismatches: 26, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
40 12 0.07
41 46 0.26
42 56 0.32
43 1 0.01
44 2 0.01
45 60 0.34
ACGTcount: A:0.21, C:0.12, G:0.12, T:0.55
Consensus pattern (42 bp):
TGAATCAATTGTTTGTTGTTTTAAATAGATTCTTTGCTTCTT
Found at i:94810299 original size:87 final size:83
Alignment explanation
Indices: 94810113--94810326 Score: 254
Period size: 87 Copynumber: 2.5 Consensus size: 83
94810103 TCCTGAATCG
* * * * * *
94810113 ATTGTTTGTTGTTTTAAA-TCAGTTCTTTTCTTCTTTG-ATCAATTTTTTTTTGTTTTAAATCGA
1 ATTGCTTGTTGTTTTAAATTGA-TTCTTTTCTTCTTTGAATCAATTGTTTGTTGCTTTAAATAGA
* * *
94810176 TTTTTGCTTCTTTGAATCA
65 TTTTGGCTTCTTTAAACCA
94810195 ATTGCTTGTTGTTTTAAATTGATTCTTTTCTTCTTTGAATCAATTGTTTGTTGCTTTAAATAGAT
1 ATTGCTTGTTGTTTTAAATTGATTCTTTTCTTCTTTGAATCAATTGTTTGTTGCTTTAAATAGAT
94810260 TCTTGGCTTCTTTAAACCA
66 T-TTGGCTTCTTTAAACCA
* *
94810279 ATT-CATTATTGTTGTTTTAAATAGATTCTTTGCTTCTTTGAATCAATT
1 ATTGC----TTGTTGTTTTAAATTGATTCTTTTCTTCTTTGAATCAATT
94810327 CATTAATGTT
Statistics
Matches: 114, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
82 32 0.28
83 27 0.24
84 17 0.15
87 38 0.33
ACGTcount: A:0.21, C:0.12, G:0.12, T:0.56
Consensus pattern (83 bp):
ATTGCTTGTTGTTTTAAATTGATTCTTTTCTTCTTTGAATCAATTGTTTGTTGCTTTAAATAGAT
TTTGGCTTCTTTAAACCA
Found at i:94810327 original size:21 final size:21
Alignment explanation
Indices: 94810125--94810364 Score: 95
Period size: 21 Copynumber: 11.2 Consensus size: 21
94810115 TGTTTGTTGT
* *
94810125 TTTAAATCAGTTCTTTTCTTC
1 TTTAAATCAATTCTTTGCTTC
* ** *
94810146 TTT-GATCAATT-TTTTTTTGT
1 TTTAAATCAATTCTTTGCTT-C
*
94810166 TTTAAATCGATT-TTTGCTTC
1 TTTAAATCAATTCTTTGCTTC
* *
94810186 TTTGAATCAATTGC-TTG-TTGT
1 TTTAAATCAATT-CTTTGCTT-C
** *
94810207 TTTAAATTGATTCTTTTCTTC
1 TTTAAATCAATTCTTTGCTTC
* *
94810228 TTTGAATCAATTGTTTG-TTGC
1 TTTAAATCAATTCTTTGCTT-C
*
94810249 TTTAAAT-AGATTCTTGGCTTC
1 TTTAAATCA-ATTCTTTGCTTC
* *
94810270 TTTAAACCAATTCATTATTG-TTGT
1 TTTAAATCAATTC--T-TTGCTT-C
94810294 TTTAAAT-AGATTCTTTGCTTC
1 TTTAAATCA-ATTCTTTGCTTC
* *
94810315 TTTGAATCAATTCATTAATG-TTGT
1 TTTAAATCAATTC-TT--TGCTT-C
* *
94810339 TTTAAATCTATTCTTTGCTTA
1 TTTAAATCAATTCTTTGCTTC
94810360 TTTAA
1 TTTAA
94810365 TTGATTCATT
Statistics
Matches: 161, Mismatches: 35, Indels: 46
0.67 0.14 0.19
Matches are distributed among these distances:
19 6 0.04
20 25 0.16
21 84 0.52
22 13 0.08
23 8 0.05
24 25 0.16
ACGTcount: A:0.23, C:0.12, G:0.10, T:0.55
Consensus pattern (21 bp):
TTTAAATCAATTCTTTGCTTC
Found at i:94810346 original size:24 final size:23
Alignment explanation
Indices: 94810270--94810351 Score: 64
Period size: 24 Copynumber: 3.6 Consensus size: 23
94810260 TCTTGGCTTC
*
94810270 TTTAAACCAATTCATTATTGTTGT
1 TTTAAATCAATTCATTA-TGTTGT
*
94810294 TTTAAAT-AGATTC-TT-TGCTT-C
1 TTTAAATCA-ATTCATTATG-TTGT
*
94810315 TTTGAATCAATTCATTAATGTTGT
1 TTTAAATCAATTCATT-ATGTTGT
*
94810339 TTTAAATCTATTC
1 TTTAAATCAATTC
94810352 TTTGCTTATT
Statistics
Matches: 45, Mismatches: 6, Indels: 14
0.69 0.09 0.22
Matches are distributed among these distances:
21 12 0.27
22 5 0.11
23 5 0.11
24 23 0.51
ACGTcount: A:0.28, C:0.12, G:0.09, T:0.51
Consensus pattern (23 bp):
TTTAAATCAATTCATTATGTTGT
Found at i:94811086 original size:21 final size:21
Alignment explanation
Indices: 94811062--94811128 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
94811052 ATTTTTTTGC
*
94811062 TAAATGGATTGTTTGTTATTT
1 TAAATCGATTGTTTGTTATTT
* * *
94811083 TAAATCGATTCTTTTCTTCTTT
1 TAAATCGATT-GTTTGTTATTT
*
94811105 T-AATCGATTGTTTGTTGTTT
1 TAAATCGATTGTTTGTTATTT
94811125 TAAA
1 TAAA
94811129 CAAATTGTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
20 9 0.24
21 19 0.51
22 9 0.24
ACGTcount: A:0.22, C:0.07, G:0.13, T:0.57
Consensus pattern (21 bp):
TAAATCGATTGTTTGTTATTT
Found at i:94811155 original size:21 final size:21
Alignment explanation
Indices: 94811069--94811155 Score: 70
Period size: 21 Copynumber: 4.1 Consensus size: 21
94811059 TGCTAAATGG
* *
94811069 ATTGTTTG-TTATTTTAAATCG
1 ATTGTTTGCTTCTTTT-AATCA
* * *
94811090 ATTCTTTTCTTCTTTTAATCG
1 ATTGTTTGCTTCTTTTAATCA
* *
94811111 ATTGTTTG-TTGTTTTAAACAA
1 ATTGTTTGCTTCTTTTAATC-A
*
94811132 ATTGTTTGCTTCTTTGAATCA
1 ATTGTTTGCTTCTTTTAATCA
94811153 ATT
1 ATT
94811156 CATTATTGTT
Statistics
Matches: 52, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
20 9 0.17
21 29 0.56
22 14 0.27
ACGTcount: A:0.22, C:0.10, G:0.11, T:0.56
Consensus pattern (21 bp):
ATTGTTTGCTTCTTTTAATCA
Found at i:94811165 original size:45 final size:42
Alignment explanation
Indices: 94811074--94811276 Score: 174
Period size: 45 Copynumber: 4.6 Consensus size: 42
94811064 AATGGATTGT
* * * * *
94811074 TTGTTATTTTAAATCGATTCTTTTCTTCTTTTAATCGATTGT-
1 TTGTTGTTTTAAA-CGATTCTTTGCTTCTTTGAATCAATTTTA
* *
94811116 TTGTTGTTTTAAACAAATTGTTTGCTTCTTTGAATCAATTCATTA
1 TTGTTGTTTTAAAC-GATTCTTTGCTTCTTTGAATCAATT--TTA
* * * *
94811161 TTGTTGTTTTAAATCGTTTCTTTGGTTCTTTGAATCGATTTTT
1 TTGTTGTTTTAAA-CGATTCTTTGCTTCTTTGAATCAATTTTA
* * *
94811204 TTGTTGTTTTAAATTGATCCTTTTCTTCTTTGAATCAATTTTTTA
1 TTGTTGTTTTAAA-CGATTCTTTGCTTCTTTGAATCAA--TTTTA
* *
94811249 TTTTTGTTTTAAATTGATTCTTTGCTTC
1 TTGTTGTTTTAAA-CGATTCTTTGCTTC
94811277 AAAAGCCCGT
Statistics
Matches: 131, Mismatches: 23, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.01
42 32 0.24
43 34 0.26
44 1 0.01
45 62 0.47
46 1 0.01
ACGTcount: A:0.19, C:0.11, G:0.11, T:0.59
Consensus pattern (42 bp):
TTGTTGTTTTAAACGATTCTTTGCTTCTTTGAATCAATTTTA
Found at i:94811250 original size:88 final size:87
Alignment explanation
Indices: 94811074--94811276 Score: 253
Period size: 88 Copynumber: 2.3 Consensus size: 87
94811064 AATGGATTGT
* * * **
94811074 TTGTTATTTTAAATCGATTCTTTTCTTCTTTTAATCGATTGTTTGTTGTTTTAAACAAATTGTTT
1 TTGTTGTTTTAAATCGATTCTTTGCTTCTTTGAATCGATTGTTTGTTGTTTTAAACAAATCCTTT
94811139 GCTTCTTTGAATCAATTCATTA
66 GCTTCTTTGAATCAATTCATTA
* * * ***
94811161 TTGTTGTTTTAAATCGTTTCTTTGGTTCTTTGAATCGATTTTTTTGTTGTTTTAAATTGATCCTT
1 TTGTTGTTTTAAATCGATTCTTTGCTTCTTTGAATCGA-TTGTTTGTTGTTTTAAACAAATCCTT
* **
94811226 TTCTTCTTTGAATCAATTTTTTA
65 TGCTTCTTTGAATCAATTCATTA
* *
94811249 TTTTTGTTTTAAATTGATTCTTTGCTTC
1 TTGTTGTTTTAAATCGATTCTTTGCTTC
94811277 AAAAGCCCGT
Statistics
Matches: 97, Mismatches: 18, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
87 33 0.34
88 64 0.66
ACGTcount: A:0.19, C:0.11, G:0.11, T:0.59
Consensus pattern (87 bp):
TTGTTGTTTTAAATCGATTCTTTGCTTCTTTGAATCGATTGTTTGTTGTTTTAAACAAATCCTTT
GCTTCTTTGAATCAATTCATTA
Found at i:94811636 original size:21 final size:22
Alignment explanation
Indices: 94811611--94811669 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 22
94811601 TTATTTCCCA
94811611 ATTTAATTTAATTTT-TGA-TTT
1 ATTTAATTTAATTTTCT-ATTTT
94811632 ATTTAATATTTAAATTTTCTATTTT
1 ATTT-A-ATTT-AATTTTCTATTTT
94811657 ATTT-ATTTAATTT
1 ATTTAATTTAATTT
94811670 CTAGTCATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
21 9 0.27
22 5 0.15
23 4 0.12
24 7 0.21
25 8 0.24
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (22 bp):
ATTTAATTTAATTTTCTATTTT
Found at i:94811647 original size:29 final size:28
Alignment explanation
Indices: 94811611--94811667 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
94811601 TTATTTCCCA
94811611 ATTTAATTTAAT-TTTTGATTTATTTAAT
1 ATTTAATTTAATATTTT-ATTTATTTAAT
**
94811639 ATTTAAATTTTCTATTTTATTTATTTAAT
1 ATTT-AATTTAATATTTTATTTATTTAAT
94811668 TTCTAGTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 4 0.16
29 17 0.68
30 4 0.16
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (28 bp):
ATTTAATTTAATATTTTATTTATTTAAT
Found at i:94811655 original size:24 final size:24
Alignment explanation
Indices: 94811616--94811661 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
94811606 TCCCAATTTA
94811616 ATTTAATTTTTGA-TTTATTTAAT
1 ATTTAATTTTTGATTTTATTTAAT
94811639 ATTTAAATTTTCT-ATTTTATTTA
1 ATTT-AATTTT-TGATTTTATTTA
94811662 TTTAATTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 4 0.20
24 7 0.35
25 9 0.45
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (24 bp):
ATTTAATTTTTGATTTTATTTAAT
Found at i:94814945 original size:29 final size:29
Alignment explanation
Indices: 94814892--94814987 Score: 131
Period size: 29 Copynumber: 3.3 Consensus size: 29
94814882 GTGAGCATGA
*
94814892 ATATGAATGTGA-TTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
94814920 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* ** *
94814949 ACATTCAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
94814978 ATATGAAATG
1 ATAT-AAATG
94814988 ATTGGGCTTA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 11 0.19
29 44 0.77
30 2 0.04
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:94816964 original size:47 final size:47
Alignment explanation
Indices: 94816891--94817018 Score: 141
Period size: 47 Copynumber: 2.7 Consensus size: 47
94816881 AATCGATAAT
* * * *
94816891 TACCTATACCATG-GCCATCAGCCAAATTAAGGTAACTTATCCCGGAG
1 TACCTATACCATGACCCGT-AGCCAAATTAAGGTAACTCATCCCGGAA
* * * *
94816938 TACTTATACCATGACCCGTAGCCAAATTAAGGTAACTCCTCTCTGAA
1 TACCTATACCATGACCCGTAGCCAAATTAAGGTAACTCATCCCGGAA
* * *
94816985 TACCTATACCATGGCCTGTAGCCAAATCAAGGTA
1 TACCTATACCATGACCCGTAGCCAAATTAAGGTA
94817019 TCATTCACAC
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
47 65 0.96
48 3 0.04
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (47 bp):
TACCTATACCATGACCCGTAGCCAAATTAAGGTAACTCATCCCGGAA
Found at i:94827443 original size:29 final size:29
Alignment explanation
Indices: 94827408--94827481 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
94827398 GTTGTGAGAT
* *
94827408 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
94827437 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
94827466 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
94827482 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:94835788 original size:29 final size:29
Alignment explanation
Indices: 94835753--94835826 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
94835743 GTTGTGAGAT
* *
94835753 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
94835782 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
94835811 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
94835827 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:94851584 original size:49 final size:48
Alignment explanation
Indices: 94851512--94851759 Score: 240
Period size: 49 Copynumber: 5.2 Consensus size: 48
94851502 ATGTGTGTGT
* *
94851512 CAGTGTAAGACCTATCTGGGACATGGCATCGACACAGATAAGTGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACTCAGAT-AGTGAGAGC
* * *
94851561 CAGTGTAAGACCTGTTTGGGACATGGCATTGGCCTCAAGATA-TGCA-AGC
1 CAGTGTAAGACCTGTCTGGGACATGGCA-TCGACTC-AGATAGTG-AGAGC
* * * *
94851610 TAGTGTAAGACCTGTCTGGGACATGGCATCGGCTTGAGGT-GTGTA-AG-
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-TCAGATAGTG-AGAGC
* * * * *
94851657 -TGTATAAGACTTGTCTGGGACATGGCATTGACACAGATAAGTGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACTCAGAT-AGTGAGAGC
* *
94851705 CAGTGTAAGACCTGTCTGGGACATGGCATTGACTTAGAT-GTGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACTCAGATAGTGAGAGC
94851752 CAGTGTAA
1 CAGTGTAA
94851760 AACCATATTT
Statistics
Matches: 164, Mismatches: 25, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
45 3 0.02
46 28 0.17
47 21 0.13
48 11 0.07
49 91 0.55
50 6 0.04
51 4 0.02
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACTCAGATAGTGAGAGC
Found at i:94856228 original size:26 final size:26
Alignment explanation
Indices: 94856172--94856228 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
94856162 ATTTAGTCCA
* *
94856172 AATTCTAAAAATTTAAAAATAAATAT
1 AATTTTAAAAACTTAAAAATAAATAT
* *
94856198 AATTTTAAAAACTTGAAAATATATAT
1 AATTTTAAAAACTTAAAAATAAATAT
*
94856224 TATTT
1 AATTT
94856229 ATTATAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (26 bp):
AATTTTAAAAACTTAAAAATAAATAT
Found at i:94866598 original size:299 final size:298
Alignment explanation
Indices: 94865642--94867072 Score: 1983
Period size: 298 Copynumber: 4.8 Consensus size: 298
94865632 AGGTGTTATA
* *
94865642 CGATGTCTTGCGATGGAAGTTTTAGGAGTCAGGTCATTCTTCCCTTACCTTATACGATGAGCATG
1 CGATGTCTCGCGATGGAAGTTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATG
* ** * *
94865707 AAGAGGTGAGAATTCGAAATTTGAACCTCCTGTCATTAATGTTGTCAAATCATCGATATCAAATC
66 AAGAGGTAAGAAACCAAAATTTGAACCTCCTGTCATCAATGTTGTCAAATCATCGATATCAAATC
* * ** * * * *
94865772 TAGCATCTCTGACTCAATTTTAGTAGCAAAGTGTAGGACTTTAAAGAACTCAAATGCTTAAAGCT
131 GAACATCTCTGACTCCCTTTCAGTAGCAAAGTGTAGGACGTTGAAGGACTCAAATGCTTAAAGCT
* * * * * *
94865837 AAGTAGTGTTTTAATGGTTGATTTTTTCTCGTTAATAGAAAACACAATAGTGGCATTGATGCTTA
196 AAGCAGTGCTTCAATGGTCGATTTTTTCTCGTTAATAGAAAACGCAATAGTGGCATTGATACTTA
*
94865902 CTCTATTGTTGTTATCAAAGTCGGTCCATGTAGCTTAC
261 CTCTATTGTTGTTATCAAAGCCGGTCCATGTAGCTTAC
* * *
94865940 CGATGTCTTGCGATGGAAGTTTTGGGAGTCA----AGTCTTCCCTTACCTCATACGATGAGCATG
1 CGATGTCTCGCGATGGAAGTTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATG
* * *
94866001 AAGACGTAAGAAACCAGAATTCGAACCTCCTGTCATCAATGTTGTCAAATCATCGATATCAAATC
66 AAGAGGTAAGAAACCAAAATTTGAACCTCCTGTCATCAATGTTGTCAAATCATCGATATCAAATC
* * * * * *
94866066 TG-ACATCTCTGGCTCCCTTTCAATAACAAAGTGTTA-GACTTTCAAGGACTCAAATGCTTAAGG
131 -GAACATCTCTGACTCCCTTTCAGTAGCAAAGTG-TAGGACGTTGAAGGACTCAAATGCTTAAAG
* * * * * ** * * *
94866129 CTAAACAGTGCTTCAAAGATTGATTTTTTCTCGTTAATGGAAAACATAATAGTGGTATTAATGCT
194 CTAAGCAGTGCTTCAATGGTCGATTTTTTCTCGTTAATAGAAAACGCAATAGTGGCATTGATACT
* * *
94866194 TACTTTATTGTTGTTATCAAAACCGGTCCATTTAGCTTAC
259 TACTCTATTGTTGTTATCAAAGCCGGTCCATGTAGCTTAC
* * *** * *
94866234 TGATGTCTCGCAATGGAAGTTTTAGGAGTCAACCCATTTTTTCCTTACCTCATACGATGAGCATG
1 CGATGTCTCGCGATGGAAGTTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATG
* * *
94866299 AAAAGGTAAAAAACCAAAATTTGAACCTCCTGTCATCAGTGTTGTCAAATCATCGATATCAAATC
66 AAGAGGTAAGAAACCAAAATTTGAACCTCCTGTCATCAATGTTGTCAAATCATCGATATCAAATC
* *
94866364 GAACATCTCTGATTCCCTTTCAGTAGCAAAGTGTAGGACGTTGAATGACTCAAATGCTTAAAGCT
131 GAACATCTCTGACTCCCTTTCAGTAGCAAAGTGTAGGACGTTGAAGGACTCAAATGCTTAAAGCT
*
94866429 AAGCAGTGCTTCAATGGTCGATTTTTTTCTCGTTAATAGAAAATGCAATAGTGGCATTGATACTT
196 AAGCAGTGCTTCAATGGTCGA-TTTTTTCTCGTTAATAGAAAACGCAATAGTGGCATTGATACTT
94866494 ACTCTATTGTTGTTATCAAAGCCGGTCCATGTAGCTTAC
260 ACTCTATTGTTGTTATCAAAGCCGGTCCATGTAGCTTAC
* * * *
94866533 CGATGTCTCGCGGTGAAAGTTTTAGGAGTTAGGTCATTCTTCCCTTACCTCATGCGATGAGCATG
1 CGATGTCTCGCGATGGAAGTTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATG
* * * *
94866598 AAGAGGTAAAAAACCAAAATTTGAACCTTCTGTCATCAGTGCTGTCAAATCATCGATATCAAATC
66 AAGAGGTAAGAAACCAAAATTTGAACCTCCTGTCATCAATGTTGTCAAATCATCGATATCAAATC
* *
94866663 GAACATCTCTGATTCCCTTTCAGTAGCAAAGTGTAGGACGTTGAATGACTCAAATGCTTAAAGCT
131 GAACATCTCTGACTCCCTTTCAGTAGCAAAGTGTAGGACGTTGAAGGACTCAAATGCTTAAAGCT
*
94866728 AAGCAGTGCTTCAATGGTCGATTTTTTCTCGTTAATAGAAAATGCAATAGTGGCATTGATACTTA
196 AAGCAGTGCTTCAATGGTCGATTTTTTCTCGTTAATAGAAAACGCAATAGTGGCATTGATACTTA
* *
94866793 CTTTATTGTTGTTATCAAAGCCGATCCATGTAGCTTAC
261 CTCTATTGTTGTTATCAAAGCCGGTCCATGTAGCTTAC
* * * *
94866831 CGATGTCTCGCGGTGAAAGTTTTAGGAGTTAGGTGATTCTTCCCTTACCTCATACGATGAGCATG
1 CGATGTCTCGCGATGGAAGTTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATG
* * *
94866896 AAGAGGTAAGAAACCAAAATTTGAACCTTCTGTCATCAATGCTGTCAAATCATCTATATCAAATC
66 AAGAGGTAAGAAACCAAAATTTGAACCTCCTGTCATCAATGTTGTCAAATCATCGATATCAAATC
* * * * * * * *
94866961 TAACTTCTCTAACTCCATTTTAGCAGCAAAGTGTAGGACTTTGAAGGACTCAAATGCTTAAGGCT
131 GAACATCTCTGACTCCCTTTCAGTAGCAAAGTGTAGGACGTTGAAGGACTCAAATGCTTAAAGCT
* *
94867026 AAGCAGTGCTTTAATGGTCGATTTTTTCTTGTTAATAGAAAACGCAA
196 AAGCAGTGCTTCAATGGTCGATTTTTTCTCGTTAATAGAAAACGCAA
94867073 AATTGAGTTT
Statistics
Matches: 1019, Mismatches: 105, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
294 251 0.25
295 2 0.00
297 3 0.00
298 489 0.48
299 274 0.27
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (298 bp):
CGATGTCTCGCGATGGAAGTTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATG
AAGAGGTAAGAAACCAAAATTTGAACCTCCTGTCATCAATGTTGTCAAATCATCGATATCAAATC
GAACATCTCTGACTCCCTTTCAGTAGCAAAGTGTAGGACGTTGAAGGACTCAAATGCTTAAAGCT
AAGCAGTGCTTCAATGGTCGATTTTTTCTCGTTAATAGAAAACGCAATAGTGGCATTGATACTTA
CTCTATTGTTGTTATCAAAGCCGGTCCATGTAGCTTAC
Found at i:94866800 original size:597 final size:591
Alignment explanation
Indices: 94865642--94867072 Score: 2022
Period size: 597 Copynumber: 2.4 Consensus size: 591
94865632 AGGTGTTATA
* *
94865642 CGATGTCTTGCGATGGAAGTTTTAGGAGTCAGGTCATTCTTCCCTTACCTTATACGATGAGCATG
1 CGATGTCTCGCGATGGAAGTTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATG
* ** * *
94865707 AAGAGGTGAGAATTCGAAATTTGAACCTCCTGTCATTAATGTTGTCAAATCATCGATATCAAATC
66 AAGAGGTAAGAAACCAAAATTTGAACCTCCTGTCATCAATGTTGTCAAATCATCGATATCAAATC
* * *
94865772 TAGCATCTCTGACTCAATTTTAGTAGCAAAGTGTAGGACTTTAAAGAACTCAAATGCTTAAAGCT
131 TAACATCTCTGACTCCATTTTAGTAGCAAAGTGTAGGACTTGAAAG-ACTCAAATGCTTAAAGCT
* * * * *
94865837 AAGTAGTGTTTTAATGGTTGATTTTTTCTCGTTAATAGAAAACACAATAGTGGCATTGATGCTTA
195 AAGCAGTGCTTTAATGGTCGATTTTTTCTCGTTAATAGAAAACGCAATAGTGGCATTGATACTTA
* * *
94865902 CTCTATTGTTGTTATCAAAGTCGGTCCATGTAGCTTACCGATGTCTTGCGATGGAAGTTTTGGGA
260 CTCTATTGTTGTTATCAAAGCCGGTCCATGTAGCTTACCGATGTCTCGCGATGAAAGTTTTGGGA
* *
94865967 GTCAAGTCTTCCCTTACCTCATACGATGAGCATGAAGACGTAAGAAACCAGAATTCGAACCTCCT
325 GTCAAGTCTTCCCTTACCTCATACGATGAGCATGAAGACGTAAAAAACCAAAATTCGAACCTCCT
* *
94866032 GTCATCAATGTTGTCAAATCATCGATATCAAATCTGACATCTCTGGCTCCCTTTCAATAACAAAG
390 GTCATCAATGCTGTCAAATCATCGATATCAAATCTGACATCTCTGACTCCCTTTCAATAACAAAG
* * *
94866097 TGTTAGACTTTCAAGGACTCAAATGCTTAAGGCTAAACAGTGCTTCAAAGATTGATTTTTTCTCG
455 TGTTAGACGTTCAAGGACTCAAATGCTTAAAGCTAAACAGTGCTTCAAAGATCGATTTTTTCTCG
* * * * * *
94866162 TTAATGGAAAACATAATAGTGGTATTAATGCTTACTTTATTGTTGTTATCAAAACCGGTCCATTT
520 TTAATAGAAAACACAATAGTGGCATTAATACTTACTTTATTGTTGTTATCAAAACCGATCCATGT
94866227 AGCTTAC
585 AGCTTAC
* * *** * *
94866234 TGATGTCTCGCAATGGAAGTTTTAGGAGTCAACCCATTTTTTCCTTACCTCATACGATGAGCATG
1 CGATGTCTCGCGATGGAAGTTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATG
* * *
94866299 AAAAGGTAAAAAACCAAAATTTGAACCTCCTGTCATCAGTGTTGTCAAATCATCGATATCAAATC
66 AAGAGGTAAGAAACCAAAATTTGAACCTCCTGTCATCAATGTTGTCAAATCATCGATATCAAATC
* * * * *
94866364 GAACATCTCTGATTCCCTTTCAGTAGCAAAGTGTAGGACGTTGAATGACTCAAATGCTTAAAGCT
131 TAACATCTCTGACTCCATTTTAGTAGCAAAGTGTAGGAC-TTGAAAGACTCAAATGCTTAAAGCT
* *
94866429 AAGCAGTGCTTCAATGGTCGATTTTTTTCTCGTTAATAGAAAATGCAATAGTGGCATTGATACTT
195 AAGCAGTGCTTTAATGGTCGA-TTTTTTCTCGTTAATAGAAAACGCAATAGTGGCATTGATACTT
*
94866494 ACTCTATTGTTGTTATCAAAGCCGGTCCATGTAGCTTACCGATGTCTCGCGGTGAAAGTTTTAGG
259 ACTCTATTGTTGTTATCAAAGCCGGTCCATGTAGCTTACCGATGTCTCGCGATGAAAGTTTT-GG
* * * *
94866559 AGTTAGGTC-ATTCTTCCCTTACCTCATGCGATGAGCATGAAGAGGTAAAAAACCAAAATTTGAA
323 -G--A-GTCAAGTCTTCCCTTACCTCATACGATGAGCATGAAGACGTAAAAAACCAAAATTCGAA
* * * *
94866623 CCTTCTGTCATCAGTGCTGTCAAATCATCGATATCAAATC-GAACATCTCTGATTCCCTTTCAGT
384 CCTCCTGTCATCAATGCTGTCAAATCATCGATATCAAATCTG-ACATCTCTGACTCCCTTTCAAT
* * * * * *
94866687 AGCAAAGTG-TAGGACGTTGAATGACTCAAATGCTTAAAGCTAAGCAGTGCTTCAATGGTCGATT
448 AACAAAGTGTTA-GACGTTCAAGGACTCAAATGCTTAAAGCTAAACAGTGCTTCAAAGATCGATT
** * *
94866751 TTTTCTCGTTAATAGAAAATGCAATAGTGGCATTGATACTTACTTTATTGTTGTTATCAAAGCCG
512 TTTTCTCGTTAATAGAAAACACAATAGTGGCATTAATACTTACTTTATTGTTGTTATCAAAACCG
94866816 ATCCATGTAGCTTAC
577 ATCCATGTAGCTTAC
* * * *
94866831 CGATGTCTCGCGGTGAAAGTTTTAGGAGTTAGGTGATTCTTCCCTTACCTCATACGATGAGCATG
1 CGATGTCTCGCGATGGAAGTTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATG
* * *
94866896 AAGAGGTAAGAAACCAAAATTTGAACCTTCTGTCATCAATGCTGTCAAATCATCTATATCAAATC
66 AAGAGGTAAGAAACCAAAATTTGAACCTCCTGTCATCAATGTTGTCAAATCATCGATATCAAATC
* * * * *
94866961 TAACTTCTCTAACTCCATTTTAGCAGCAAAGTGTAGGACTTTGAAGGACTCAAATGCTTAAGGCT
131 TAACATCTCTGACTCCATTTTAGTAGCAAAGTGTAGGAC-TTGAAAGACTCAAATGCTTAAAGCT
*
94867026 AAGCAGTGCTTTAATGGTCGATTTTTTCTTGTTAATAGAAAACGCAA
195 AAGCAGTGCTTTAATGGTCGATTTTTTCTCGTTAATAGAAAACGCAA
94867073 AATTGAGTTT
Statistics
Matches: 733, Mismatches: 97, Indels: 14
0.87 0.11 0.02
Matches are distributed among these distances:
592 181 0.25
593 103 0.14
594 2 0.00
595 1 0.00
596 27 0.04
597 416 0.57
598 3 0.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (591 bp):
CGATGTCTCGCGATGGAAGTTTTAGGAGTCAGGTCATTCTTCCCTTACCTCATACGATGAGCATG
AAGAGGTAAGAAACCAAAATTTGAACCTCCTGTCATCAATGTTGTCAAATCATCGATATCAAATC
TAACATCTCTGACTCCATTTTAGTAGCAAAGTGTAGGACTTGAAAGACTCAAATGCTTAAAGCTA
AGCAGTGCTTTAATGGTCGATTTTTTCTCGTTAATAGAAAACGCAATAGTGGCATTGATACTTAC
TCTATTGTTGTTATCAAAGCCGGTCCATGTAGCTTACCGATGTCTCGCGATGAAAGTTTTGGGAG
TCAAGTCTTCCCTTACCTCATACGATGAGCATGAAGACGTAAAAAACCAAAATTCGAACCTCCTG
TCATCAATGCTGTCAAATCATCGATATCAAATCTGACATCTCTGACTCCCTTTCAATAACAAAGT
GTTAGACGTTCAAGGACTCAAATGCTTAAAGCTAAACAGTGCTTCAAAGATCGATTTTTTCTCGT
TAATAGAAAACACAATAGTGGCATTAATACTTACTTTATTGTTGTTATCAAAACCGATCCATGTA
GCTTAC
Found at i:94867586 original size:31 final size:31
Alignment explanation
Indices: 94867546--94867614 Score: 131
Period size: 31 Copynumber: 2.3 Consensus size: 31
94867536 GAATTTGGAC
94867546 TAAA-TTGACAAATGTGCAAACATTAAGGGT
1 TAAATTTGACAAATGTGCAAACATTAAGGGT
94867576 TAAATTTGACAAATGTGCAAACATTAAGGGT
1 TAAATTTGACAAATGTGCAAACATTAAGGGT
94867607 TAAATTTG
1 TAAATTTG
94867615 TTGGATTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 4 0.11
31 34 0.89
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.30
Consensus pattern (31 bp):
TAAATTTGACAAATGTGCAAACATTAAGGGT
Found at i:94867859 original size:61 final size:60
Alignment explanation
Indices: 94867742--94867861 Score: 145
Period size: 61 Copynumber: 2.0 Consensus size: 60
94867732 ATTATTTTTT
* * * *
94867742 TTGAATTTTTAGAATTTGGACTATATTGACAAAATGTACAAACATTGAGGGTTAAATTTG
1 TTGAATTTTTAGAATTAGGACGATATTGACAAAATGTACAAACATTAAGGGCTAAATTTG
**
94867802 TTGAATTTTTTAGAATTAGGATCGA-ATTGA-AAAATGTACAAAGTGTTAAGGGCTAAATTT
1 TTGAA-TTTTTAGAATTAGGA-CGATATTGACAAAATGTACAAA-CATTAAGGGCTAAATTT
94867862 ATTATTATAT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
60 17 0.33
61 32 0.63
62 2 0.04
ACGTcount: A:0.38, C:0.06, G:0.19, T:0.38
Consensus pattern (60 bp):
TTGAATTTTTAGAATTAGGACGATATTGACAAAATGTACAAACATTAAGGGCTAAATTTG
Found at i:94869175 original size:20 final size:20
Alignment explanation
Indices: 94869152--94869190 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
94869142 ATATTTTTAT
*
94869152 AATTTTATACTTTTTTAATA
1 AATTTAATACTTTTTTAATA
*
94869172 AATTTAATATTTTTTTAAT
1 AATTTAATACTTTTTTAAT
94869191 TTTTAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
AATTTAATACTTTTTTAATA
Found at i:94869206 original size:30 final size:31
Alignment explanation
Indices: 94869172--94869230 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
94869162 TTTTTTAATA
*
94869172 AATTTAATATTTTT-TTAATTTTTAAAAAAT
1 AATTTAATATTTTTCTGAATTTTTAAAAAAT
*
94869202 AATTTTATATTTTTCCTGAATTTTTAAAA
1 AATTTAATATTTTT-CTGAATTTTTAAAA
94869231 TTAAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 13 0.52
32 12 0.48
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (31 bp):
AATTTAATATTTTTCTGAATTTTTAAAAAAT
Found at i:94869231 original size:30 final size:28
Alignment explanation
Indices: 94869163--94869231 Score: 68
Period size: 30 Copynumber: 2.4 Consensus size: 28
94869153 ATTTTATACT
* *
94869163 TTTTTAATA-AATTTAATATTTTTTTAA
1 TTTTTAAAATAATTTAATATTTTTTGAA
*
94869190 TTTTTAAAAAATAATTTTATATTTTTCCTGAA
1 TTTTT--AAAATAATTTAATATTTTT--TGAA
94869222 TTTTTAAAAT
1 TTTTTAAAAT
94869232 TAAAAAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
27 5 0.15
29 3 0.09
30 18 0.53
32 8 0.24
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (28 bp):
TTTTTAAAATAATTTAATATTTTTTGAA
Found at i:94872432 original size:13 final size:13
Alignment explanation
Indices: 94872402--94872439 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
94872392 AATATTTGAC
94872402 ATATAAAGAAAAAT
1 ATATAAA-AAAAAT
*
94872416 ATATAAAAAATAT
1 ATATAAAAAAAAT
94872429 ATATAAAAAAA
1 ATATAAAAAAA
94872440 TTAGTTGATG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (13 bp):
ATATAAAAAAAAT
Found at i:94872440 original size:14 final size:14
Alignment explanation
Indices: 94872402--94872440 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
94872392 AATATTTGAC
94872402 ATATAAAGAAAA-AT
1 ATATAAA-AAAATAT
94872416 ATAT-AAAAAATAT
1 ATATAAAAAAATAT
94872429 ATATAAAAAAAT
1 ATATAAAAAAAT
94872441 TAGTTGATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.17
13 8 0.35
14 11 0.48
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.26
Consensus pattern (14 bp):
ATATAAAAAAATAT
Found at i:94873967 original size:31 final size:31
Alignment explanation
Indices: 94873906--94874033 Score: 140
Period size: 31 Copynumber: 4.3 Consensus size: 31
94873896 GTGATGAAAG
94873906 CCTACCACCT-GGATTGCCCCG-C-A--ATGA
1 CCTACCACCTCGGATTG-CCCGACAATGATGA
* *
94873933 CCTACCACCCCGGATTGCCAGACAATGATGA
1 CCTACCACCTCGGATTGCCCGACAATGATGA
* * *
94873964 CCTACCACCTTGGATTGCCCGGCAATGATAA
1 CCTACCACCTCGGATTGCCCGACAATGATGA
* * *
94873995 CCTACTACCTCGAATTGCCCGACAAAGATGA
1 CCTACCACCTCGGATTGCCCGACAATGATGA
94874026 CCTACCAC
1 CCTACCAC
94874034 AATTACTCTA
Statistics
Matches: 82, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
27 12 0.15
28 7 0.09
29 1 0.01
31 62 0.76
ACGTcount: A:0.27, C:0.37, G:0.17, T:0.19
Consensus pattern (31 bp):
CCTACCACCTCGGATTGCCCGACAATGATGA
Found at i:94874019 original size:62 final size:58
Alignment explanation
Indices: 94873906--94874033 Score: 166
Period size: 62 Copynumber: 2.1 Consensus size: 58
94873896 GTGATGAAAG
* *
94873906 CCTACCACCTGGATTGCCCCGCAATGACCTACCACCCCGGATTGCCAGACAATGATGA
1 CCTACCACCTGGATTGCCCCGCAATGACCTACCACCCCGAATTGCCAGACAAAGATGA
* * * *
94873964 CCTACCACCTTGGATTGCCCGGCAATGATAACCTACTACCTCGAATTGCCCGACAAAGATGA
1 CCTACCACC-TGGATTGCCCCGCAATG---ACCTACCACCCCGAATTGCCAGACAAAGATGA
94874026 CCTACCAC
1 CCTACCAC
94874034 AATTACTCTA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
58 9 0.15
59 16 0.27
62 35 0.58
ACGTcount: A:0.27, C:0.37, G:0.17, T:0.19
Consensus pattern (58 bp):
CCTACCACCTGGATTGCCCCGCAATGACCTACCACCCCGAATTGCCAGACAAAGATGA
Found at i:94877908 original size:17 final size:16
Alignment explanation
Indices: 94877882--94877913 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
94877872 TTTCCAATGT
94877882 TATAATACATATTCAA
1 TATAATACATATTCAA
94877898 TATACATACATATTCA
1 TATA-ATACATATTCA
94877914 GGTAGACTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.38
Consensus pattern (16 bp):
TATAATACATATTCAA
Found at i:94879708 original size:40 final size:40
Alignment explanation
Indices: 94879645--94879824 Score: 260
Period size: 39 Copynumber: 4.6 Consensus size: 40
94879635 ATTCGGATTG
94879645 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
94879684 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
94879724 ATAACCGGGCCAAGTCCCGAAGGCAATT-TGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
94879763 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
94879803 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
94879825 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 66 0.52
40 62 0.48
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:94879805 original size:79 final size:79
Alignment explanation
Indices: 94879645--94879798 Score: 256
Period size: 79 Copynumber: 1.9 Consensus size: 79
94879635 ATTCGGATTG
* * *
94879645 ATAACCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
1 ATAACCGGGCCAAGCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAT
*
94879710 TTGTGCGAGTTACT
66 TTGAGCGAGTTACT
94879724 ATAACCGGGCCAAGTCCCGAAGGCAATT-TGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCCAAG-CCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
94879788 TTTGAGCGAGT
65 TTTGAGCGAGT
94879799 AGCTATATCC
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
79 58 0.83
80 12 0.17
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (79 bp):
ATAACCGGGCCAAGCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAT
TTGAGCGAGTTACT
Found at i:94889544 original size:142 final size:142
Alignment explanation
Indices: 94889376--94889661 Score: 563
Period size: 142 Copynumber: 2.0 Consensus size: 142
94889366 GCTTACATTG
94889376 TTTCTTCTATGTAAAACTAGACTCAATGCGATTTAATTTTATATTTTATTCAATCTCCAATTTTA
1 TTTCTTCTATGTAAAACTAGACTCAATGCGATTTAATTTTATATTTTATTCAATCTCCAATTTTA
*
94889441 TTTCCACAATTTTTGGTGATTTTTCAAGGTTATACTACTACTGCTGTCCAAAACTATTTTAAAGC
66 TTTCCACAATTTTTGGTGATTTTTCAAAGTTATACTACTACTGCTGTCCAAAACTATTTTAAAGC
94889506 TAATTTTACTCT
131 TAATTTTACTCT
94889518 TTTCTTCTATGTAAAACTAGACTCAATGCGATTTAATTTTATATTTTATTCAATCTCCAATTTTA
1 TTTCTTCTATGTAAAACTAGACTCAATGCGATTTAATTTTATATTTTATTCAATCTCCAATTTTA
94889583 TTTCCACAATTTTTGGTGATTTTTCAAAGTTATACTACTACTGCTGTCCAAAACTATTTTAAAGC
66 TTTCCACAATTTTTGGTGATTTTTCAAAGTTATACTACTACTGCTGTCCAAAACTATTTTAAAGC
94889648 TAATTTTACTCT
131 TAATTTTACTCT
94889660 TT
1 TT
94889662 CATGATTCCC
Statistics
Matches: 143, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
142 143 1.00
ACGTcount: A:0.29, C:0.17, G:0.08, T:0.46
Consensus pattern (142 bp):
TTTCTTCTATGTAAAACTAGACTCAATGCGATTTAATTTTATATTTTATTCAATCTCCAATTTTA
TTTCCACAATTTTTGGTGATTTTTCAAAGTTATACTACTACTGCTGTCCAAAACTATTTTAAAGC
TAATTTTACTCT
Found at i:94901388 original size:42 final size:43
Alignment explanation
Indices: 94901327--94901430 Score: 104
Period size: 42 Copynumber: 2.4 Consensus size: 43
94901317 GATTTCGTGT
* * *
94901327 TCTGTTTTACGTGTAAGACCATGTTTGGGACATTGGCATCATA
1 TCTGATTTACGTGTAAGACCATGTCTGGGACAGTGGCATCATA
* * * *
94901370 TCTGATTT-CGTGTTAGACCCTGTCTGGGATAGTGGCATCGATG
1 TCTGATTTACGTGTAAGACCATGTCTGGGACAGTGGCATC-ATA
* *
94901413 TTTGA-TTACATGTAAGAC
1 TCTGATTTACGTGTAAGAC
94901431 TACGTCTAGG
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
42 28 0.57
43 21 0.43
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.37
Consensus pattern (43 bp):
TCTGATTTACGTGTAAGACCATGTCTGGGACAGTGGCATCATA
Found at i:94914512 original size:16 final size:17
Alignment explanation
Indices: 94914491--94914535 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
94914481 TTTTTGTTTA
94914491 TTTTGCT-CTCCTCTCT
1 TTTTGCTCCTCCTCTCT
94914507 TTTTGCTGCC-CCTCT-T
1 TTTTGCT-CCTCCTCTCT
*
94914523 ATTTGCTCCTCCT
1 TTTTGCTCCTCCT
94914536 ACTTCTCTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
15 2 0.08
16 17 0.68
17 5 0.20
18 1 0.04
ACGTcount: A:0.02, C:0.38, G:0.09, T:0.51
Consensus pattern (17 bp):
TTTTGCTCCTCCTCTCT
Done.