Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 280 of 373
Found at i:94914705 original size:7 final size:7
Alignment explanation
Indices: 94914693--94914724 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
94914683 CCGTTGTCGT
94914693 CATCCTC
1 CATCCTC
94914700 CATCCTC
1 CATCCTC
94914707 CATCCTC
1 CATCCTC
94914714 CATCCTC
1 CATCCTC
94914721 CATC
1 CATC
94914725 ATTCATTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.16, C:0.56, G:0.00, T:0.28
Consensus pattern (7 bp):
CATCCTC
Found at i:94917108 original size:99 final size:100
Alignment explanation
Indices: 94916988--94917190 Score: 241
Period size: 99 Copynumber: 2.0 Consensus size: 100
94916978 TTCGGTCGAT
* * * *
94916988 TATAGAAAATCAAATATAATATCACATATATGCATGCCTAT-ATGGCTGAATA-TGCAAGATCAA
1 TATACAAAATCAAATATAATATCACATATATGCATACCT-TCATGGCCGAATACT-CAAAATCAA
* *
94917051 AT-TAACATCAAATATATACTTACTTATATGGCAGAA
64 ATATAACATCAAATATATACATACCTATATGGCAGAA
* * * *
94917087 TATACAAATTCAAATATAATATCACATTTGTGCATACCTTCATGGCCGAATACTCAAAATCCAAT
1 TATACAAAATCAAATATAATATCACATATATGCATACCTTCATGGCCGAATACTCAAAATCAAAT
* * * *
94917152 ATAACATCACATATGTACATACCTATGTGGCCGAA
66 ATAACATCAAATATATACATACCTATATGGCAGAA
94917187 TATA
1 TATA
94917191 TACAAGGTCA
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
98 1 0.01
99 53 0.61
100 33 0.38
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (100 bp):
TATACAAAATCAAATATAATATCACATATATGCATACCTTCATGGCCGAATACTCAAAATCAAAT
ATAACATCAAATATATACATACCTATATGGCAGAA
Found at i:94917138 original size:50 final size:50
Alignment explanation
Indices: 94916988--94917190 Score: 196
Period size: 50 Copynumber: 4.1 Consensus size: 50
94916978 TTCGGTCGAT
* * * * * *
94916988 TATAGAAAATCAAATATAATATCACATATATGCATGCCTATATGGCTGAA
1 TATACAAAATCAAATATAACATCACATATGTACATACCTATATGGCCGAA
* * * * * * *
94917038 TATGCAAGATCAAAT-TAACATCAAATATATACTTACTTATATGGCAGAA
1 TATACAAAATCAAATATAACATCACATATGTACATACCTATATGGCCGAA
* * * *
94917087 TATACAAATTCAAATATAATATCACATTTGTGCATACCT-TCATGGCCGAA
1 TATACAAAATCAAATATAACATCACATATGTACATACCTAT-ATGGCCGAA
* *
94917137 TACT-CAAAATCCAATATAACATCACATATGTACATACCTATGTGGCCGAA
1 TA-TACAAAATCAAATATAACATCACATATGTACATACCTATATGGCCGAA
94917187 TATA
1 TATA
94917191 TACAAGGTCA
Statistics
Matches: 121, Mismatches: 27, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
49 41 0.34
50 78 0.64
51 2 0.02
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (50 bp):
TATACAAAATCAAATATAACATCACATATGTACATACCTATATGGCCGAA
Found at i:94928993 original size:16 final size:16
Alignment explanation
Indices: 94928956--94928995 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
94928946 GAGAATTAAG
*
94928956 TAAAAATCAAATAAAC
1 TAAAAATCAAATAAAA
94928972 TAAAAATCAAATAAAAA
1 TAAAAATCAAAT-AAAA
94928989 TAAAAAT
1 TAAAAAT
94928996 AAAAATTTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.20
Consensus pattern (16 bp):
TAAAAATCAAATAAAA
Found at i:94929329 original size:17 final size:17
Alignment explanation
Indices: 94929307--94929348 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
94929297 TTATGTTACG
* *
94929307 AAAAATCAAATTAAGCT
1 AAAAATCAAATAAAACT
*
94929324 AAAAAT-TAATAAAACT
1 AAAAATCAAATAAAACT
94929340 AAAAATCAA
1 AAAAATCAA
94929349 CCAATTTAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.67, C:0.10, G:0.02, T:0.21
Consensus pattern (17 bp):
AAAAATCAAATAAAACT
Found at i:94930633 original size:33 final size:31
Alignment explanation
Indices: 94930572--94930633 Score: 72
Period size: 31 Copynumber: 1.9 Consensus size: 31
94930562 TTGACTTATT
* *
94930572 ATCTAATAATAAAATATATTAATTTATTTCA
1 ATCTAATAATAAAAAATATTAATATATTTCA
94930603 ATCTAA-ACATAAAAAATATTAGATAATATTT
1 ATCTAATA-ATAAAAAATATTA-AT-ATATTT
94930634 TATTTTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
30 1 0.04
31 18 0.69
32 2 0.08
33 5 0.19
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (31 bp):
ATCTAATAATAAAAAATATTAATATATTTCA
Found at i:94932016 original size:14 final size:14
Alignment explanation
Indices: 94931988--94932032 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
94931978 TTTTTATAAA
*
94931988 TTTAAAATTTAATT
1 TTTAAATTTTAATT
* *
94932002 TTTATATTTTTATT
1 TTTAAATTTTAATT
94932016 TTTAAATTTTAATT
1 TTTAAATTTTAATT
94932030 TTT
1 TTT
94932033 TTTTACTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTAAATTTTAATT
Found at i:94932033 original size:8 final size:7
Alignment explanation
Indices: 94931995--94932032 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
94931985 AAATTTAAAA
94931995 TTTAATT
1 TTTAATT
94932002 TTTATATT
1 TTTA-ATT
94932010 TTT-ATT
1 TTTAATT
*
94932016 TTTAAAT
1 TTTAATT
94932023 TTTAATT
1 TTTAATT
94932030 TTT
1 TTT
94932033 TTTTACTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 6 0.22
7 15 0.56
8 6 0.22
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTAATT
Found at i:94938503 original size:18 final size:18
Alignment explanation
Indices: 94938480--94938517 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
94938470 TTTCATGCTT
94938480 ACCCATATGCTTTCATTC
1 ACCCATATGCTTTCATTC
*
94938498 ACCCATATGCTTTCGTTC
1 ACCCATATGCTTTCATTC
94938516 AC
1 AC
94938518 TAGATATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.34, G:0.08, T:0.37
Consensus pattern (18 bp):
ACCCATATGCTTTCATTC
Found at i:94945419 original size:10 final size:10
Alignment explanation
Indices: 94945404--94945450 Score: 58
Period size: 10 Copynumber: 4.4 Consensus size: 10
94945394 GCTTATAGTC
94945404 CATACCAAAT
1 CATACCAAAT
94945414 CATACCAAAT
1 CATACCAAAT
94945424 CATAAGCCAAAGT
1 CAT-A-CCAAA-T
*
94945437 CATACCAAAA
1 CATACCAAAT
94945447 CATA
1 CATA
94945451 TGTTTCATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 17 0.52
11 6 0.18
12 6 0.18
13 4 0.12
ACGTcount: A:0.51, C:0.28, G:0.04, T:0.17
Consensus pattern (10 bp):
CATACCAAAT
Found at i:94945440 original size:23 final size:22
Alignment explanation
Indices: 94945408--94945450 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
94945398 ATAGTCCATA
*
94945408 CCAAATCATACCAAATCATAAG
1 CCAAATCATACCAAAACATAAG
94945430 CCAAAGTCATACCAAAACATA
1 CCAAA-TCATACCAAAACATA
94945451 TGTTTCATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.51, C:0.28, G:0.05, T:0.16
Consensus pattern (22 bp):
CCAAATCATACCAAAACATAAG
Found at i:94946201 original size:43 final size:42
Alignment explanation
Indices: 94946135--94946304 Score: 159
Period size: 43 Copynumber: 4.0 Consensus size: 42
94946125 AGCTCATACA
* *
94946135 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAATATTG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACACGAAATCAAATA-TG
94946178 ATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCAAATATG
1 ATGCCACTGTCCCAGAC-GTGGTCTTACACGAAATCAAATATG
* * * *
94946220 GTGACGA-TGTCCTAGACATGGTCTTACACGTAAATCTCAAATA-G
1 ATG-CCACTGTCCCAGACGTGGTCTTACACG-AAA--TCAAATATG
* * * *
94946264 ATGCCAATGTCCCAAACGTGGTCTTACATGAAATCACATAT
1 ATGCCACTGTCCCAGACGTGGTCTTACACGAAATCAAATAT
94946305 CAAAAATCCT
Statistics
Matches: 105, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
41 6 0.06
42 26 0.25
43 43 0.41
44 23 0.22
45 7 0.07
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACGTGGTCTTACACGAAATCAAATATG
Found at i:94946297 original size:86 final size:84
Alignment explanation
Indices: 94946143--94946304 Score: 202
Period size: 86 Copynumber: 1.9 Consensus size: 84
94946133 CAATGCCAAC
* * * *
94946143 GTCCCAGACGTGGTCTTACATGTAATCAAATATTGATGCCACTGTCCCAGACAGGGTCTTACACG
1 GTCCCAGACATGGTCTTACACGTAATCAAATA-TGATGCCAATGTCCCAAACAGGGTCTTACACG
94946208 AAATCAAATATGGTGACGAT
65 AAATCAAATATGGTGACGAT
*
94946228 GTCCTAGACATGGTCTTACACGTAAATCTCAAATA-GATGCCAATGTCCCAAAC-GTGGTCTTAC
1 GTCCCAGACATGGTCTTACACGT-AA--TCAAATATGATGCCAATGTCCCAAACAG-GGTCTTAC
* *
94946291 ATGAAATCACATAT
62 ACGAAATCAAATAT
94946305 CAAAAATCCT
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 21 0.32
86 38 0.58
88 7 0.11
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.27
Consensus pattern (84 bp):
GTCCCAGACATGGTCTTACACGTAATCAAATATGATGCCAATGTCCCAAACAGGGTCTTACACGA
AATCAAATATGGTGACGAT
Found at i:94946787 original size:43 final size:43
Alignment explanation
Indices: 94946721--94946805 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
94946711 CACAAAATAC
*
94946721 ACAAAATTTCCTTTCACACATGCCTAGCTGAATTTTCCTTTAA
1 ACAAAATTTCCTTTCACACATGCCTAGCTAAATTTTCCTTTAA
*
94946764 ACAAAATTTCCTTTCACATATGCCTAGCTAAATTTTCCTTTA
1 ACAAAATTTCCTTTCACACATGCCTAGCTAAATTTTCCTTTA
94946806 GCTTAAATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.39
Consensus pattern (43 bp):
ACAAAATTTCCTTTCACACATGCCTAGCTAAATTTTCCTTTAA
Found at i:94955565 original size:10 final size:10
Alignment explanation
Indices: 94955550--94955596 Score: 58
Period size: 10 Copynumber: 4.4 Consensus size: 10
94955540 GCTTATAGTC
94955550 CATACCAAAT
1 CATACCAAAT
94955560 CATACCAAAT
1 CATACCAAAT
94955570 CATAAGCCAAAGT
1 CAT-A-CCAAA-T
*
94955583 CATACCAAAA
1 CATACCAAAT
94955593 CATA
1 CATA
94955597 TGTTTCATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 17 0.52
11 6 0.18
12 6 0.18
13 4 0.12
ACGTcount: A:0.51, C:0.28, G:0.04, T:0.17
Consensus pattern (10 bp):
CATACCAAAT
Found at i:94955586 original size:23 final size:22
Alignment explanation
Indices: 94955554--94955596 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
94955544 ATAGTCCATA
*
94955554 CCAAATCATACCAAATCATAAG
1 CCAAATCATACCAAAACATAAG
94955576 CCAAAGTCATACCAAAACATA
1 CCAAA-TCATACCAAAACATA
94955597 TGTTTCATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.51, C:0.28, G:0.05, T:0.16
Consensus pattern (22 bp):
CCAAATCATACCAAAACATAAG
Found at i:94956378 original size:41 final size:40
Alignment explanation
Indices: 94956288--94956442 Score: 125
Period size: 43 Copynumber: 3.7 Consensus size: 40
94956278 CAATGCCAAC
** * * *
94956288 GTCCCAGATGTGGTTTTACATGTAATCAAATATCAATACCACT
1 GTCCCAGACATGGTCTTACA-GAAATCAAATA-CGATACCA-T
*
94956331 GTCCCAGACAGGGTCTTACAGAAATCAAATACGATACCGAT
1 GTCCCAGACATGGTCTTACAGAAATCAAATACGATACC-AT
* * *
94956372 GTCCCAGATATGGTCTTACTTGTAAATCTCAAAT-CGATGCCAAT
1 GTCCCAGACATGGTCTTAC-AG-AAA--TCAAATACGATACC-AT
94956416 GTCCCAGAC-TGGTCTTACACGAAATCA
1 GTCCCAGACATGGTCTTACA-GAAATCA
94956443 CATATCAAAA
Statistics
Matches: 93, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
40 3 0.03
41 24 0.26
42 15 0.16
43 29 0.31
44 16 0.17
45 6 0.06
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (40 bp):
GTCCCAGACATGGTCTTACAGAAATCAAATACGATACCAT
Found at i:94965048 original size:16 final size:16
Alignment explanation
Indices: 94965027--94965060 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
94965017 ATGTTTTTTG
94965027 ATTTTATTATATGTTT
1 ATTTTATTATATGTTT
* *
94965043 ATTTTATTTTATTTTT
1 ATTTTATTATATGTTT
94965059 AT
1 AT
94965061 ATATTATGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (16 bp):
ATTTTATTATATGTTT
Found at i:94965053 original size:21 final size:20
Alignment explanation
Indices: 94965017--94965055 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
94965007 CTGACTCGAC
94965017 ATGTTTTTTGATTTTATTAT
1 ATGTTTTTTGATTTTATTAT
*
94965037 ATGTTTATTTTATTTTATT
1 ATGTTT-TTTGATTTTATT
94965056 TTTATATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.72
Consensus pattern (20 bp):
ATGTTTTTTGATTTTATTAT
Found at i:94965156 original size:30 final size:30
Alignment explanation
Indices: 94965090--94965156 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
94965080 ATATTAAAAT
*
94965090 TAAATATGTAATGTTTTATTTTAAATATTAA
1 TAAATATGT-ATGTTTTATTTTAAAAATTAA
*
94965121 AAAATATGT-TG-TTTATGTTTAAAAAATTAA
1 TAAATATGTATGTTTTAT-TTT-AAAAATTAA
94965151 TAAATA
1 TAAATA
94965157 AAATAAAATC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
28 5 0.16
29 5 0.16
30 13 0.42
31 8 0.26
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (30 bp):
TAAATATGTATGTTTTATTTTAAAAATTAA
Found at i:94973559 original size:36 final size:37
Alignment explanation
Indices: 94973514--94973594 Score: 146
Period size: 36 Copynumber: 2.2 Consensus size: 37
94973504 GCTGGTAATC
94973514 AATACATAATCTCATGGAACCATCATTC-TTTTTTACG
1 AATA-ATAATCTCATGGAACCATCATTCTTTTTTTACG
94973551 AATAATAATCTCATGGAACCATCATTCTTTTTTTACG
1 AATAATAATCTCATGGAACCATCATTCTTTTTTTACG
94973588 AATAATA
1 AATAATA
94973595 CGGGAGCACC
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
36 23 0.53
37 20 0.47
ACGTcount: A:0.36, C:0.19, G:0.07, T:0.38
Consensus pattern (37 bp):
AATAATAATCTCATGGAACCATCATTCTTTTTTTACG
Found at i:94985868 original size:28 final size:28
Alignment explanation
Indices: 94985826--94985934 Score: 105
Period size: 28 Copynumber: 3.9 Consensus size: 28
94985816 ACCTATATAT
* * * *
94985826 ATATAGCCCACTAGGCCTAATCTCTTTC
1 ATATGGCCCATTAGGCCAAATCACTTTC
* *
94985854 ATATGGCCCATTAGGCCCATTCACATTT-
1 ATATGGCCCATTAGGCCAAATCAC-TTTC
* *
94985882 ATGTGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGG-CCAAATCACTTTC
94985911 ATATGG-CCATTAGGCCCAAATCAC
1 ATATGGCCCATTAGG-CCAAATCAC
94985935 ATTTACAGTC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
28 53 0.78
29 15 0.22
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCAAATCACTTTC
Found at i:94985898 original size:56 final size:57
Alignment explanation
Indices: 94985831--94985939 Score: 150
Period size: 57 Copynumber: 1.9 Consensus size: 57
94985821 TATATATATA
* * * *
94985831 GCCCACTAGG-CCTAATCTCTTTCATATGGCCCATTAGGCCC-ATTCACATTTATGTG
1 GCCCACTAGGCCCAAATCACATTCATATGG-CCATTAGGCCCAAATCACATTTATGTG
*
94985887 GCCCATTAGGCCCAAATCACATTCATATGGCCATTAGGCCCAAATCACATTTA
1 GCCCACTAGGCCCAAATCACATTCATATGGCCATTAGGCCCAAATCACATTTA
94985940 CAGTCATGCT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
56 20 0.43
57 26 0.57
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (57 bp):
GCCCACTAGGCCCAAATCACATTCATATGGCCATTAGGCCCAAATCACATTTATGTG
Found at i:94985935 original size:28 final size:29
Alignment explanation
Indices: 94985851--94985937 Score: 133
Period size: 28 Copynumber: 3.1 Consensus size: 29
94985841 CCTAATCTCT
*
94985851 TTCATATGGCCCATTAGGCCC-ATTCACA
1 TTCATATGGCCCATTAGGCCCAAATCACA
* *
94985879 TTTATGTGGCCCATTAGGCCCAAATCACA
1 TTCATATGGCCCATTAGGCCCAAATCACA
94985908 TTCATATGG-CCATTAGGCCCAAATCACA
1 TTCATATGGCCCATTAGGCCCAAATCACA
94985936 TT
1 TT
94985938 TACAGTCATG
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
28 40 0.75
29 13 0.25
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
TTCATATGGCCCATTAGGCCCAAATCACA
Found at i:94990334 original size:28 final size:28
Alignment explanation
Indices: 94990303--94990388 Score: 84
Period size: 28 Copynumber: 3.1 Consensus size: 28
94990293 AATCCACATA
*
94990303 CCTATATATATTTATATATCCCACTAGG
1 CCTATATATATTTATATAGCCCACTAGG
* * *
94990331 CCTA-ATCTCTTTCATATAGCCCATTAGG
1 CCTATATATATTT-ATATAGCCCACTAGG
* * * *
94990359 CCTATTTACATTTATATGGCCCATTAGG
1 CCTATATATATTTATATAGCCCACTAGG
94990387 CC
1 CC
94990389 AAAATCACAT
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
27 6 0.13
28 37 0.79
29 4 0.09
ACGTcount: A:0.27, C:0.26, G:0.10, T:0.37
Consensus pattern (28 bp):
CCTATATATATTTATATAGCCCACTAGG
Found at i:94991889 original size:16 final size:16
Alignment explanation
Indices: 94991868--94991898 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
94991858 AAATTGAGAA
94991868 TTCGGGATTTTTGGGT
1 TTCGGGATTTTTGGGT
94991884 TTCGGGATTTTTGGG
1 TTCGGGATTTTTGGG
94991899 GCGTTACATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.06, G:0.39, T:0.48
Consensus pattern (16 bp):
TTCGGGATTTTTGGGT
Found at i:94998580 original size:49 final size:48
Alignment explanation
Indices: 94998520--94998694 Score: 226
Period size: 49 Copynumber: 3.5 Consensus size: 48
94998510 CTGCTACGCA
* *
94998520 TAGTAGCCTGCACTTAGTACTACCCATGCGACCAATAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC-GGTACACG
* * * * *
94998569 TAGTAGCCTGCACTTAGTACTACACACT-TGATCACAGTTTTCGGCTACGCA
1 TAGTAGCCTGCACTTAGTACTACACA-TGCGA-C-CAATTATCGG-TACACG
94998620 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTAT-CGGTACACG
94998669 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
94998695 CGTGACCTCA
Statistics
Matches: 108, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
49 62 0.57
50 9 0.08
51 37 0.34
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGGTACACG
Found at i:94998626 original size:100 final size:100
Alignment explanation
Indices: 94998512--94998695 Score: 341
Period size: 100 Copynumber: 1.8 Consensus size: 100
94998502 GAAGCTATCT
* *
94998512 GCTACGCATAGTAGCCTGCACTTAGTACTACCCATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GCTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
94998577 TGCACTTAGTACTACACACTTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACTTGATCACAGTTTTCG
*
94998612 GCTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GCTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
94998677 TGCACTTAGTACTACACAC
66 TGCACTTAGTACTACACAC
94998696 GTGACCTCAC
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.26
Consensus pattern (100 bp):
GCTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACTTGATCACAGTTTTCG
Found at i:95004608 original size:46 final size:46
Alignment explanation
Indices: 95004539--95004711 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 46
95004529 GTAACCCGCC
* *
95004539 CCTAAGTGAACTTGGACTCAACTCAACGAGCTC-AAGCATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAAGCATTCGCAT
* *
95004584 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTC-GAAG-C-A-TTCGCAT
* *
95004634 -CTCA-CGAACTCGGACTCAACTCAACGAGTTCGAA-CATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAAGCATTCGCAT
95004677 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCG
95004712 GATGCTCAAC
Statistics
Matches: 108, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 58 0.54
47 26 0.24
48 4 0.04
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAAGCATTCGCAT
Found at i:95004659 original size:93 final size:93
Alignment explanation
Indices: 95004546--95004716 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
95004536 GCCCCTAAGT
*
95004546 GAACTTGGACTCAACTCAACGAGCTC-AAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGAA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95004610 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* *
95004639 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
95004704 CGAGTTCGGATGC
66 CGAGTTCGGATGC
95004717 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 72 0.97
94 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:95004732 original size:46 final size:46
Alignment explanation
Indices: 95004539--95004732 Score: 152
Period size: 46 Copynumber: 4.2 Consensus size: 46
95004529 GTAACCCGCC
* * * *
95004539 CCTAAGTGAACTTGGACTCAACTCAACGAGCTC--AAGCATTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC--TCAACAT
95004584 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACAT
* * * *** *
95004634 -CTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
95004677 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CAT
95004725 CCT-AGTGA
1 CCTAAGTGA
95004733 CATGTCACTT
Statistics
Matches: 117, Mismatches: 18, Indels: 27
0.72 0.11 0.17
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 5 0.04
46 64 0.55
47 29 0.25
48 11 0.09
49 1 0.01
50 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
Found at i:95012106 original size:46 final size:46
Alignment explanation
Indices: 95012039--95012209 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
95012029 AACCCGCCCC
*
95012039 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
* *
95012085 TAAGTGAACTCAGACTCAACTCAACAAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCACATCCA
* * * * *
95012133 T--CTGAATTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
95012177 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
95012210 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 2 0.02
44 1 0.01
46 84 0.82
48 2 0.02
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
Found at i:95012175 original size:92 final size:92
Alignment explanation
Indices: 95012043--95012213 Score: 279
Period size: 92 Copynumber: 1.9 Consensus size: 92
95012033 CGCCCCTAAG
* *
95012043 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCAGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
95012108 ACAAGTTCGGATGCCTAGTTACATCTC
66 ACAAGTTCGGATGCCTAGTTACATCTC
* * * *
95012135 TGAATTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
*
95012200 ACGAGTTCGGATGC
66 ACAAGTTCGGATGC
95012214 TCAACCATCA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
92 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (92 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
ACAAGTTCGGATGCCTAGTTACATCTC
Found at i:95012229 original size:46 final size:45
Alignment explanation
Indices: 95012041--95012229 Score: 154
Period size: 46 Copynumber: 4.1 Consensus size: 45
95012031 CCCGCCCCTA
* ** *
95012041 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-ACATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT-CAT
* *
95012086 AAGTGAACTCAGACTCAACTCAACAAGTTCGGATGC-CTAGTTACATC-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACATCAT
* * *** *
95012134 -CTGAATTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT-CAT
95012178 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CATCAT
95012225 AGTGA
1 AGTGA
95012230 CATGTCACTT
Statistics
Matches: 111, Mismatches: 20, Indels: 24
0.72 0.13 0.15
Matches are distributed among these distances:
42 3 0.03
43 1 0.01
44 1 0.01
45 1 0.01
46 92 0.83
47 4 0.04
48 4 0.04
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCAT
Found at i:95021101 original size:18 final size:18
Alignment explanation
Indices: 95021078--95021124 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
95021068 TCATCTTTTA
*
95021078 TTTATTTTTATTTTTATC
1 TTTATTTTTATTTTTAAC
* *
95021096 TTTATTTATCTTTTTAAC
1 TTTATTTTTATTTTTAAC
*
95021114 TTAATTTTTAT
1 TTTATTTTTAT
95021125 CCTATTTCTC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTATTTTTATTTTTAAC
Found at i:95024703 original size:19 final size:19
Alignment explanation
Indices: 95024676--95024714 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
95024666 GATTTCTAAT
* *
95024676 GATAGAAAATGTATGTTTG
1 GATAAAAAATGCATGTTTG
95024695 GATAAAAAATGCATGTTTG
1 GATAAAAAATGCATGTTTG
95024714 G
1 G
95024715 TGTTTGATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.26, T:0.33
Consensus pattern (19 bp):
GATAAAAAATGCATGTTTG
Found at i:95038995 original size:35 final size:35
Alignment explanation
Indices: 95038956--95039049 Score: 118
Period size: 35 Copynumber: 2.7 Consensus size: 35
95038946 TCTTACATGA
*
95038956 CCAAAGACACACTCGTGTCACAGGCCGTTACACAG
1 CCAAAGACACACCCGTGTCACAGGCCGTTACACAG
* *
95038991 CCAAAGACACGCCCGTGTCACAGGCCGTTACA-TG
1 CCAAAGACACACCCGTGTCACAGGCCGTTACACAG
** *
95039025 ACCAAAGACATGCCTGTGTCACAGG
1 -CCAAAGACACACCCGTGTCACAGG
95039050 TCGTGTGGAC
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
34 1 0.02
35 52 0.98
ACGTcount: A:0.30, C:0.33, G:0.22, T:0.15
Consensus pattern (35 bp):
CCAAAGACACACCCGTGTCACAGGCCGTTACACAG
Found at i:95043486 original size:43 final size:43
Alignment explanation
Indices: 95043405--95043489 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
95043395 AAATAGTACA
**
95043405 ATGCCAACGTCCCAGACGTGGTCTTACATGTAGCCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
95043448 ATGCC-ACTGTCCCAGACAG-GGTCTTAC-TCGTAAACACATATC
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACAT-GTAAACACATATC
95043490 AAAATCACAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
42 3 0.08
43 33 0.89
44 1 0.03
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
Found at i:95061968 original size:40 final size:39
Alignment explanation
Indices: 95061783--95061976 Score: 248
Period size: 39 Copynumber: 4.9 Consensus size: 39
95061773 CGATATAATA
* * * *
95061783 TATATCCGGG-TTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTAT
95061822 TATATCCGGGC-AAAGTCCCGCAGGCATTTGTGCTGGTAT
1 TATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTAT
* * *
95061861 TATATCTGGGCTAAAGTCCCACAGGCTTTGTACTGGTAT
1 TATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTAT
*
95061900 TATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTAGTAT
1 TATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTAT
* * *
95061939 TATATCTGGGCTTAAAGTCCCGCATGCTTTGTGGTGGT
1 TATATCCGGGC-TAAAGTCCCGCAGGCTTTGTGCTGGT
95061977 GATTGGATTT
Statistics
Matches: 137, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 101 0.74
40 36 0.26
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (39 bp):
TATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTAT
Found at i:95067404 original size:40 final size:39
Alignment explanation
Indices: 95067287--95067469 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 39
95067277 TATTTGGGTT
* * *
95067287 AAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC-A
1 AAGTCCCGCAGGC-TTTGTGCTGGTATTATATCCGGGCTA
95067326 AAGTCCCGCAGGCATTTGTGCTGGTATTATATCCGGGCTA
1 AAGTCCCGCAGGC-TTTGTGCTGGTATTATATCCGGGCTA
95067366 AAGTCCCGCAGGCTTTGTGCTGGTATTATATCCGGGGCTA
1 AAGTCCCGCAGGCTTTGTGCTGGTATTATATCC-GGGCTA
95067406 AAGTCCCGCAGGCTTTGTGCTGGTATTATATCCGGGCTTA
1 AAGTCCCGCAGGCTTTGTGCTGGTATTATATCCGGGC-TA
* *
95067446 AAGTCCCGCATGCTTTGTGGTGGT
1 AAGTCCCGCAGGCTTTGTGCTGGT
95067470 GATTGGATTT
Statistics
Matches: 136, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
39 59 0.43
40 77 0.57
ACGTcount: A:0.18, C:0.22, G:0.30, T:0.30
Consensus pattern (39 bp):
AAGTCCCGCAGGCTTTGTGCTGGTATTATATCCGGGCTA
Found at i:95067434 original size:79 final size:79
Alignment explanation
Indices: 95067287--95067469 Score: 280
Period size: 79 Copynumber: 2.3 Consensus size: 79
95067277 TATTTGGGTT
* * *
95067287 AAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCAAAGTCCCGCAGGCATTTGTGCTGGTA
1 AAGTCCCGCAGGC-TTTGTGCTGGTATTATATCCGGGCAAAGTCCCGCAGGCATTTGTGCTGGTA
95067352 TTATATCCGGGC-TA
65 TTATATCCGGGCTTA
95067366 AAGTCCCGCAGGCTTTGTGCTGGTATTATATCCGGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGT
1 AAGTCCCGCAGGCTTTGTGCTGGTATTATATCC-GGGC-AAAGTCCCGCAGGCATTTGTGCTGGT
95067430 ATTATATCCGGGCTTA
64 ATTATATCCGGGCTTA
* *
95067446 AAGTCCCGCATGCTTTGTGGTGGT
1 AAGTCCCGCAGGCTTTGTGCTGGT
95067470 GATTGGATTT
Statistics
Matches: 96, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
78 18 0.19
79 40 0.42
80 38 0.40
ACGTcount: A:0.18, C:0.22, G:0.30, T:0.30
Consensus pattern (79 bp):
AAGTCCCGCAGGCTTTGTGCTGGTATTATATCCGGGCAAAGTCCCGCAGGCATTTGTGCTGGTAT
TATATCCGGGCTTA
Found at i:95070072 original size:131 final size:131
Alignment explanation
Indices: 95069806--95070052 Score: 320
Period size: 131 Copynumber: 1.9 Consensus size: 131
95069796 AGAATGAGTG
* *
95069806 AAATTCTAAAGGAATATTCAGTTATTTGGAACAAACAAGAGATCGCAACCCAGCACGATAGGGCA
1 AAATTCCAAAGGAATATTCAGTTATTTGGAACAAACAAGAAATCGCAACCCAGCACGATAGGGCA
** * * *
95069871 CGATTCCCCGAATTGCCAAATGTCGAACATTACCTTCATTTTGTAGAATTTTTAAAGACATAAGC
66 CGATTCCCCGAATTGCCAAACATCGAACATCACCTTCATTTTGAAAAATTTTTAAAGACATAAGC
*
95069936 G
131 A
* * * **
95069937 AAATTCCAAAGGAATATTTTA-TTGTTTTGAACAAACGGGAAATCGCAACCCAGCACGATAGGGC
1 AAATTCCAAAGGAATA-TTCAGTTATTTGGAACAAACAAGAAATCGCAACCCAGCACGATAGGGC
** *
95070001 ACGATT-CCCGAATTGCCAAACATCGAGTATCACCTTCGTTTT-AAAAATTTTT
65 ACGATTCCCCGAATTGCCAAACATCGAACATCACCTTCATTTTGAAAAATTTTT
95070053 GAATGAATAG
Statistics
Matches: 100, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
129 8 0.08
130 30 0.30
131 59 0.59
132 3 0.03
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (131 bp):
AAATTCCAAAGGAATATTCAGTTATTTGGAACAAACAAGAAATCGCAACCCAGCACGATAGGGCA
CGATTCCCCGAATTGCCAAACATCGAACATCACCTTCATTTTGAAAAATTTTTAAAGACATAAGC
A
Found at i:95070705 original size:23 final size:23
Alignment explanation
Indices: 95070661--95070707 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
95070651 TTAGATTATG
*
95070661 TATAAGGTATAAATAATAATAAT
1 TATAAGGTATAAAAAATAATAAT
*
95070684 TATAATGTATAATAAAAT-ATAAT
1 TATAAGGTATAA-AAAATAATAAT
95070707 T
1 T
95070708 TTTAAAACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.38
Consensus pattern (23 bp):
TATAAGGTATAAAAAATAATAAT
Found at i:95072361 original size:40 final size:40
Alignment explanation
Indices: 95072287--95072551 Score: 354
Period size: 40 Copynumber: 6.6 Consensus size: 40
95072277 AACCCAAGTA
* * *
95072287 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATG
* * *
95072326 TCTTCGGGTCTTAGCCCGGATATATTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
* *
95072366 CCTTCGGGACTTATCCCGGATGTAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
*
95072406 CCTTCGGGACTTAGCCCGGATGTAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
* *
95072446 CCTTCGGGACTTAGCCCGGATGTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
* *
95072486 CCTTCGGGACTTAGCCCGGATATAGTAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATA--ATC-ACTAGCACAAATG
*
95072529 GCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
95072552 CATCTGAATA
Statistics
Matches: 203, Mismatches: 18, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 11 0.05
40 156 0.77
41 1 0.00
42 1 0.00
43 34 0.17
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
Found at i:95080429 original size:31 final size:31
Alignment explanation
Indices: 95080402--95080470 Score: 138
Period size: 31 Copynumber: 2.2 Consensus size: 31
95080392 ATGAAGAATG
95080402 AAAGAATATTTAGAAGAATGTTCGAAGAACA
1 AAAGAATATTTAGAAGAATGTTCGAAGAACA
95080433 AAAGAATATTTAGAAGAATGTTCGAAGAACA
1 AAAGAATATTTAGAAGAATGTTCGAAGAACA
95080464 AAAGAAT
1 AAAGAAT
95080471 CCGAAAGTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.54, C:0.06, G:0.19, T:0.22
Consensus pattern (31 bp):
AAAGAATATTTAGAAGAATGTTCGAAGAACA
Found at i:95088484 original size:3 final size:3
Alignment explanation
Indices: 95088476--95088527 Score: 72
Period size: 3 Copynumber: 17.7 Consensus size: 3
95088466 TGTGTAAGGT
*
95088476 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATGT ATA ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
95088521 AT- ATA AT
1 ATA ATA AT
95088528 TTTTAAAAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
2 4 0.09
3 38 0.86
4 2 0.05
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:95102793 original size:13 final size:13
Alignment explanation
Indices: 95102771--95102803 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
95102761 AAGGGTTTGT
95102771 TTAT-TAAACTAA
1 TTATCTAAACTAA
95102783 TTATCTAAACTAA
1 TTATCTAAACTAA
*
95102796 TTAACTAA
1 TTATCTAA
95102804 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:95105709 original size:21 final size:21
Alignment explanation
Indices: 95105683--95105722 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
95105673 ATGTCTTTCA
95105683 AAATAAA-ATAATAAAATAAAT
1 AAATAAATA-AATAAAATAAAT
95105704 AAATAAATAAATAAAATAA
1 AAATAAATAAATAAAATAA
95105723 GAATAAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (21 bp):
AAATAAATAAATAAAATAAAT
Found at i:95115055 original size:16 final size:16
Alignment explanation
Indices: 95115034--95115087 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 16
95115024 CAGCCTAGGG
95115034 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
* ***
95115050 GCAAAAGT-TTA-GGG
1 GCAAAAGTGTAATTAT
95115064 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
95115080 GCAAAAGT
1 GCAAAAGT
95115088 TTAGGGGCAA
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
14 8 0.29
15 4 0.14
16 16 0.57
ACGTcount: A:0.43, C:0.07, G:0.24, T:0.26
Consensus pattern (16 bp):
GCAAAAGTGTAATTAT
Found at i:95115065 original size:30 final size:30
Alignment explanation
Indices: 95115029--95115107 Score: 158
Period size: 30 Copynumber: 2.6 Consensus size: 30
95115019 TTCCCCAGCC
95115029 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
95115059 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
95115089 TAGGGGCAAAAGTGTAATT
1 TAGGGGCAAAAGTGTAATT
95115108 TTTTAAAGTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.39, C:0.06, G:0.28, T:0.27
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:95115069 original size:14 final size:14
Alignment explanation
Indices: 95115050--95115101 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
95115040 GTGTAATTAT
95115050 GCAAAAGTTTAGGG
1 GCAAAAGTTTAGGG
* ***
95115064 GCAAAAGTGTAATTAT
1 GCAAAAGT-TTA-GGG
95115080 GCAAAAGTTTAGGG
1 GCAAAAGTTTAGGG
95115094 GCAAAAGT
1 GCAAAAGT
95115102 GTAATTTTTT
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
14 16 0.57
15 4 0.14
16 8 0.29
ACGTcount: A:0.40, C:0.08, G:0.29, T:0.23
Consensus pattern (14 bp):
GCAAAAGTTTAGGG
Found at i:95123133 original size:47 final size:47
Alignment explanation
Indices: 95123061--95123179 Score: 213
Period size: 47 Copynumber: 2.5 Consensus size: 47
95123051 GGATGGTTGA
95123061 GCATCCGAACTCGTTGAG-TGAAGTCCGAGTTCATGAAATGTAACTAG
1 GCATCCGAACTCGTTGAGTTG-AGTCCGAGTTCATGAAATGTAACTAG
*
95123108 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAG
95123155 GCATCCGAACTCGTTGAGTTGAGTC
1 GCATCCGAACTCGTTGAGTTGAGTC
95123180 TGCGTTCACT
Statistics
Matches: 70, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
47 68 0.97
48 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAG
Found at i:95137718 original size:3 final size:3
Alignment explanation
Indices: 95137710--95137734 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
95137700 CTTTTTCTTC
95137710 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
95137735 AGAGTTCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:95139566 original size:46 final size:45
Alignment explanation
Indices: 95139499--95139667 Score: 160
Period size: 46 Copynumber: 3.7 Consensus size: 45
95139489 TGTAACCCGC
**
95139499 CCATAAGTGAACTCAAACTCAACTCAACGAACTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAACTCGGGC-TTCGCAT
* * * *
95139545 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAACTCGG--GCTTCGCAT
* *** * * * *
95139591 ACATCTCTCGAACTCGGACTCAAATCAACGAATTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAACTCGGGC-TTCGCAT
95139638 CCATAAGTGAACTCGGACTCAACTCAACGA
1 CCATAAGTGAACTCGGACTCAACTCAACGA
95139668 GTTTGGATGC
Statistics
Matches: 95, Mismatches: 23, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
45 1 0.01
46 61 0.64
47 31 0.33
48 2 0.02
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAACTCGGGCTTCGCAT
Found at i:95148647 original size:24 final size:24
Alignment explanation
Indices: 95148618--95148665 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
95148608 ATAAGTAAAT
95148618 TTTGTTATTATATAGATTGAGAAA
1 TTTGTTATTATATAGATTGAGAAA
95148642 TTTGTTATTATATAGATTGAGAAA
1 TTTGTTATTATATAGATTGAGAAA
95148666 ATTGAGATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.46
Consensus pattern (24 bp):
TTTGTTATTATATAGATTGAGAAA
Found at i:95148986 original size:43 final size:43
Alignment explanation
Indices: 95148939--95149056 Score: 175
Period size: 43 Copynumber: 2.7 Consensus size: 43
95148929 AGATTACATA
*
95148939 TAAGACCATGTCTGGGACATTGGCATTA-TATTGCGATTATGAG
1 TAAGACCATGTCTGGGACATTGGCATTATTA-TGCGATTACGAG
* *
95148982 TAAGACCATGTCTGGGACATTGGCATCATTATGCGATTACGTG
1 TAAGACCATGTCTGGGACATTGGCATTATTATGCGATTACGAG
* *
95149025 TAAGACAATGTCTGGGACATTGGCATTGTTAT
1 TAAGACCATGTCTGGGACATTGGCATTATTAT
95149057 ATGATTTCGT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
43 66 0.97
44 2 0.03
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATTGGCATTATTATGCGATTACGAG
Found at i:95151405 original size:42 final size:42
Alignment explanation
Indices: 95151349--95151460 Score: 108
Period size: 42 Copynumber: 2.7 Consensus size: 42
95151339 GAGATTTACT
* *
95151349 TGTAAGACCATGTCTGGGACA-TAGGCATCG-TATTTGATT-TCG
1 TGTAAGACCCTGTCTGGGACAGT-GGCATCGATA-TTGATTAT-A
* *
95151391 TGTAAGACCCTGTCTAGGATAGTGGCATCGATATTGATTATA
1 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTGATTATA
95151433 TGTAAGACCAC-GTCTGGGAC-GTTGGCAT
1 TGTAAGACC-CTGTCTGGGACAG-TGGCAT
95151461 TGTACGAGCT
Statistics
Matches: 59, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
41 1 0.02
42 53 0.90
43 5 0.08
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTGATTATA
Found at i:95156224 original size:21 final size:22
Alignment explanation
Indices: 95156183--95156224 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
95156173 ATAAACATAG
* *
95156183 TTCAAAATATAAAATAGAAGTC
1 TTCAAAAAATAAAATAAAAGTC
95156205 TTCAAAAAAT-AAATAAAAGT
1 TTCAAAAAATAAAATAAAAGT
95156225 AAAGTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.26
Consensus pattern (22 bp):
TTCAAAAAATAAAATAAAAGTC
Found at i:95156244 original size:12 final size:12
Alignment explanation
Indices: 95156208--95156264 Score: 57
Period size: 12 Copynumber: 4.8 Consensus size: 12
95156198 AGAAGTCTTC
95156208 AAAAAAT-AAAT
1 AAAAAATAAAAT
* *
95156219 -AAAAGTAAAGT
1 AAAAAATAAAAT
95156230 AAAAACA-AAAAT
1 AAAAA-ATAAAAT
95156242 AAAAAATAAAAT
1 AAAAAATAAAAT
95156254 AAAAAAATAAA
1 -AAAAAATAAA
95156265 TGGACTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
10 5 0.14
11 4 0.11
12 18 0.49
13 10 0.27
ACGTcount: A:0.81, C:0.02, G:0.04, T:0.14
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:95161553 original size:39 final size:40
Alignment explanation
Indices: 95161436--95161659 Score: 262
Period size: 39 Copynumber: 5.7 Consensus size: 40
95161426 GCTACTCGTT
* *
95161436 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * * *
95161476 CAATTGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
95161516 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
95161555 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
95161594 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
95161635 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
95161660 CATCATTCAA
Statistics
Matches: 162, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 74 0.46
40 73 0.45
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:95161613 original size:79 final size:78
Alignment explanation
Indices: 95161436--95161659 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
95161426 GCTACTCGTT
* * * * *
95161436 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTTGGGACTTAACCCGG
1 CAAATGCCTTC-GGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
95161501 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
95161516 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGACTTAGCCCGGATA-TAGTA-CTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
95161579 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * *
95161594 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCG
95161658 GA
63 GA
95161660 CATCATTCAA
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
78 37 0.30
79 56 0.45
80 32 0.26
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:95161659 original size:40 final size:40
Alignment explanation
Indices: 95161417--95161659 Score: 229
Period size: 40 Copynumber: 6.1 Consensus size: 40
95161407 TGGAATTTAA
** *
95161417 CCGGATATAGCTAC-TCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TACTTCGCACAAATGCCTTCGGGACTTAGC
* * * *
95161457 CCGGTTATAGTAAC-TCGCACAATTGCCTTTGGGACTTAAC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
*
95161497 CCGGATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
95161536 CCGGA-ATTAGTA-TCTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATA-TAGTACT-TCGCACAAATGCCTTCGGGACTTAGC
*
95161575 CCGGA-ATTAGTA-TCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTACT-TCGCACAAATGCCTTCGGGA-CTTAGC
* *
95161615 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
95161655 CCGGA
1 CCGGA
95161660 CATCATTCAA
Statistics
Matches: 176, Mismatches: 17, Indels: 20
0.83 0.08 0.09
Matches are distributed among these distances:
38 3 0.02
39 70 0.40
40 89 0.51
41 13 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTACTTCGCACAAATGCCTTCGGGACTTAGC
Found at i:95170605 original size:34 final size:33
Alignment explanation
Indices: 95170545--95170624 Score: 115
Period size: 34 Copynumber: 2.4 Consensus size: 33
95170535 TACTATAATA
95170545 GGCTTAGGCCCCACTGATACTGTTACTGAAACG
1 GGCTTAGGCCCCACTGATACTGTTACTGAAACG
* * *
95170578 GGCTTAGGCCCAGACTGCTACTGTTACTGAAATG
1 GGCTTAGGCCC-CACTGATACTGTTACTGAAACG
*
95170612 GGCTAAGGCCCCA
1 GGCTTAGGCCCCA
95170625 ACCGAAACTG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
33 12 0.29
34 29 0.71
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.23
Consensus pattern (33 bp):
GGCTTAGGCCCCACTGATACTGTTACTGAAACG
Found at i:95178078 original size:56 final size:56
Alignment explanation
Indices: 95177992--95178124 Score: 203
Period size: 56 Copynumber: 2.4 Consensus size: 56
95177982 ATGGCATCGA
* *
95177992 TATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATTGATATGTGATTCCGT
1 TATATGTGTGCGAGTAAGACCACATTTAATAAGTTGGCATCGATATGTGATTCCGT
* * * *
95178048 TATATGTGTACGAGTAAGACCACGTTTAATAAGTTGGCATCGGTATGTGATTCTGT
1 TATATGTGTGCGAGTAAGACCACATTTAATAAGTTGGCATCGATATGTGATTCCGT
*
95178104 TATATGTGTGCGAGTACGACC
1 TATATGTGTGCGAGTAAGACC
95178125 CTGTCTGGTA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 69 1.00
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (56 bp):
TATATGTGTGCGAGTAAGACCACATTTAATAAGTTGGCATCGATATGTGATTCCGT
Found at i:95178151 original size:56 final size:56
Alignment explanation
Indices: 95177992--95178155 Score: 179
Period size: 56 Copynumber: 2.9 Consensus size: 56
95177982 ATGGCATCGA
* * * * *
95177992 TATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATTGATATGTGATTCCGT
1 TATATGTGTACGAGTAAGACCACGTCTAATAAGTTGGCATCGATATGTGATTCCGT
* * *
95178048 TATATGTGTACGAGTAAGACCACGTTTAATAAGTTGGCATCGGTATGTGATTCTGT
1 TATATGTGTACGAGTAAGACCACGTCTAATAAGTTGGCATCGATATGTGATTCCGT
* * ** *
95178104 TATATGTGTGCGAGTACGACC-CTGTCTGGTACAG-TGGTATCGATATGTGATT
1 TATATGTGTACGAGTAAGACCAC-GTCTAATA-AGTTGGCATCGATATGTGATT
95178156 ACATGTAATA
Statistics
Matches: 93, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
55 1 0.01
56 90 0.97
57 2 0.02
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (56 bp):
TATATGTGTACGAGTAAGACCACGTCTAATAAGTTGGCATCGATATGTGATTCCGT
Found at i:95181969 original size:48 final size:48
Alignment explanation
Indices: 95181895--95181986 Score: 148
Period size: 48 Copynumber: 1.9 Consensus size: 48
95181885 TAGGATTATG
* *
95181895 TGTGATCCAATGTAAGACCATGTCTGGGACATGGCATTGGCATCAACA
1 TGTGATCCAATGTAAGACAATATCTGGGACATGGCATTGGCATCAACA
* *
95181943 TGTGATCCCATGTAAGACAATATCTGGGATATGGCATTGGCATC
1 TGTGATCCAATGTAAGACAATATCTGGGACATGGCATTGGCATC
95181987 GATATGAGAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (48 bp):
TGTGATCCAATGTAAGACAATATCTGGGACATGGCATTGGCATCAACA
Found at i:95184349 original size:18 final size:17
Alignment explanation
Indices: 95184314--95184354 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
95184304 TGAATCAAGG
95184314 TAAA-TAAATCCAAAAT
1 TAAATTAAATCCAAAAT
*
95184330 TAAATTAAATACCCAAAT
1 TAAATTAAAT-CCAAAAT
95184348 TAAATTA
1 TAAATTA
95184355 CTCAAAAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.18
17 5 0.23
18 13 0.59
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAATTAAATCCAAAAT
Found at i:95187440 original size:43 final size:43
Alignment explanation
Indices: 95187392--95187496 Score: 165
Period size: 43 Copynumber: 2.4 Consensus size: 43
95187382 TTCAACAAAC
* **
95187392 TCGCACACTTAGTGCCGATTAATTAGCTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCCAAGCTATAATTGTA
*
95187435 TCGCACACTTAGTGCCAATTAATTAGCCCAGGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCCAAGCTATAATTGTA
*
95187478 TCACACACTTAGTGCCAAT
1 TCGCACACTTAGTGCCAAT
95187497 ACATTAAACT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAATTAATTAGCCCAAGCTATAATTGTA
Found at i:95196283 original size:29 final size:28
Alignment explanation
Indices: 95196248--95196324 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 28
95196238 CATGAGATTG
95196248 GCACTAAGTGTGCGGGTTTAAATTGTACA-
1 GCACTAAGTGTGCGGGTTTAAA--GTACAT
*
95196277 GCACTAAGTGTGCGAGTTTAAAGTACATT
1 GCACTAAGTGTGCGGGTTTAAAGTACA-T
95196306 GCACTAAGTGTGCGTGGTT
1 GCACTAAGTGTGCG-GGTT
95196325 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGGGTTTAAAGTACAT
Found at i:95196542 original size:174 final size:174
Alignment explanation
Indices: 95196277--95196604 Score: 584
Period size: 174 Copynumber: 1.9 Consensus size: 174
95196267 AAATTGTACA
* *
95196277 GCACTAAGTGTGCGAGTTTAAAGTACATTGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
95196342 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTACGACCTTACCGAGTCAA
95196407 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
95196451 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
95196516 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTACGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTACGACCTTACCGAGTCAA
95196581 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
95196605 ACCTTGAGTT
Statistics
Matches: 146, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 146 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTACGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:95204419 original size:29 final size:28
Alignment explanation
Indices: 95204384--95204460 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 28
95204374 CATGAGATTG
95204384 GCACTAAGTGTGCGGGTTTAAATTGTACA-
1 GCACTAAGTGTGCGGGTTTAAA--GTACAT
*
95204413 GCACTAAGTGTGCGAGTTTAAAGTACATT
1 GCACTAAGTGTGCGGGTTTAAAGTACA-T
95204442 GCACTAAGTGTGCGTGGTT
1 GCACTAAGTGTGCG-GGTT
95204461 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGGGTTTAAAGTACAT
Found at i:95204678 original size:174 final size:174
Alignment explanation
Indices: 95204413--95204740 Score: 584
Period size: 174 Copynumber: 1.9 Consensus size: 174
95204403 AAATTGTACA
* *
95204413 GCACTAAGTGTGCGAGTTTAAAGTACATTGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
95204478 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
95204543 TTTTGGACAGCAGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCAGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
95204587 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
95204652 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
*
95204717 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCAGAAAAGGTAAGT
95204741 ACCTTGAGTT
Statistics
Matches: 146, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 146 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCAGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:95207653 original size:37 final size:37
Alignment explanation
Indices: 95207553--95207654 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
95207543 CAAATAGTCC
* *
95207553 CCACACGT-GTTATCGGGTCTTACCCGAACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
95207589 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
95207626 CCACACGTAGTCATCAGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
95207655 ATATATTTCC
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
36 8 0.13
37 53 0.87
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:95207853 original size:48 final size:48
Alignment explanation
Indices: 95207795--95208132 Score: 559
Period size: 48 Copynumber: 7.0 Consensus size: 48
95207785 ATATACACAC
* * *
95207795 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
95207843 ATCTCATACATATATCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
95207891 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
95207939 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
95207987 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* *
95208035 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* * * *
95208083 ATCTCATACAAATTTCACACTAGCCATTCGGCCTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
95208131 AT
1 AT
95208133 ATTTATCTTG
Statistics
Matches: 275, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 275 1.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:95217649 original size:44 final size:43
Alignment explanation
Indices: 95217579--95217736 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
95217569 ATGTGTTCTT
* *
95217579 GTGTTAGACCACGTCTGGGACGTTGGCATCGAATTATGATTTAC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGAATT-TGATTTAC
* *
95217623 GTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTT-C
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGAATTTGATTTAC
* * * *
95217665 GTGTAAGACCCTATCTAGGAC-TGTGTCATCGATATTTG-TTTAC
1 GTGTAAGACCATGTCTGGGACGT-TGGCATCGA-ATTTGATTTAC
* * *
95217708 ATTTAAGACCATGTCTGGGATGTTGGCAT
1 GTGTAAGACCATGTCTGGGACGTTGGCAT
95217737 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
41 1 0.01
42 29 0.31
43 32 0.34
44 32 0.34
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACGTTGGCATCGAATTTGATTTAC
Found at i:95217701 original size:43 final size:44
Alignment explanation
Indices: 95217596--95217719 Score: 132
Period size: 42 Copynumber: 2.9 Consensus size: 44
95217586 ACCACGTCTG
* * *
95217596 GGACGTTGGCATCGA-ATTATGATTTACGTGTAAGACCATGTCTG
1 GGACATTGGCATCGATATT-TGATTTACGTGTAAGACCATATCTA
*
95217640 GGACATTGGCATCG-TATTTGATTT-CGTGTAAGACCCTATCTA
1 GGACATTGGCATCGATATTTGATTTACGTGTAAGACCATATCTA
* * *
95217682 GGAC-TGTGTCATCGATATTTG-TTTACATTTAAGACCAT
1 GGACAT-TGGCATCGATATTTGATTTACGTGTAAGACCAT
95217720 GTCTGGGATG
Statistics
Matches: 68, Mismatches: 8, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.01
42 29 0.43
43 22 0.32
44 16 0.24
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (44 bp):
GGACATTGGCATCGATATTTGATTTACGTGTAAGACCATATCTA
Found at i:95219849 original size:45 final size:45
Alignment explanation
Indices: 95219785--95219875 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
95219775 CCAAAACATG
*
95219785 TGTCACATATATCACGAACTCATACCACAACTCAATGAGTTCAGA
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGA
*
95219830 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGA
95219875 T
1 T
95219876 TACATAATTC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.25
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCAGA
Found at i:95220855 original size:13 final size:13
Alignment explanation
Indices: 95220837--95220861 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95220827 CCCTTAGGGC
95220837 TTTTCTTTCAAAA
1 TTTTCTTTCAAAA
95220850 TTTTCTTTCAAA
1 TTTTCTTTCAAA
95220862 TAAAAACGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.16, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTTCTTTCAAAA
Found at i:95226365 original size:23 final size:23
Alignment explanation
Indices: 95226338--95226381 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
95226328 AATGTCAACC
95226338 AATCCATACCTAAAATAACATCA
1 AATCCATACCTAAAATAACATCA
* *
95226361 AATCCTTACCTAAAATTACAT
1 AATCCATACCTAAAATAACAT
95226382 ACGCCAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.27
Consensus pattern (23 bp):
AATCCATACCTAAAATAACATCA
Found at i:95226534 original size:218 final size:218
Alignment explanation
Indices: 95226156--95226581 Score: 843
Period size: 218 Copynumber: 2.0 Consensus size: 218
95226146 CTTTTGAATT
95226156 AATTACATACGCCAAATAAGCTTCATAACCTTTTGTCAAATATCTCTGAGCCGACATCGAAGAAA
1 AATTACATACGCCAAATAAGCTTCATAACCTTTTGTCAAATATCTCTGAGCCGACATCGAAGAAA
95226221 TCATACTAGATAATGCCTCTGATTTGTCTGGTTCAACCCGCAGAATTTCACCACTTTCACACTTT
66 TCATACTAGATAATGCCTCTGATTTGTCTGGTTCAACCCGCAGAATTTCACCACTTTCACACTTT
95226286 AATTCTATAACCTTTTATTTGCAATTTATTATAGCATCATGCAATGTCAACCAATCCATACCTAA
131 AATTCTATAACCTTTTATTTGCAATTTATTATAGCATCATGCAATGTCAACCAATCCATACCTAA
95226351 AATAACATCAAATCCTTACCTAA
196 AATAACATCAAATCCTTACCTAA
95226374 AATTACATACGCCAAATAAGCTTCATAACCTTTTGTCAAATATCTCTGAGCCGACATCGAAGAAA
1 AATTACATACGCCAAATAAGCTTCATAACCTTTTGTCAAATATCTCTGAGCCGACATCGAAGAAA
*
95226439 TCATACTAGATAATGTCTCTGATTTGTCTGGTTCAACCCGCAGAATTTCACCACTTTCACACTTT
66 TCATACTAGATAATGCCTCTGATTTGTCTGGTTCAACCCGCAGAATTTCACCACTTTCACACTTT
95226504 AATTCTATAACCTTTTATTTGCAATTTATTATAGCATCATGCAATGTCAACCAATCCATACCTAA
131 AATTCTATAACCTTTTATTTGCAATTTATTATAGCATCATGCAATGTCAACCAATCCATACCTAA
95226569 AATAACATCAAAT
196 AATAACATCAAAT
95226582 TCATCAAACG
Statistics
Matches: 207, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
218 207 1.00
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.32
Consensus pattern (218 bp):
AATTACATACGCCAAATAAGCTTCATAACCTTTTGTCAAATATCTCTGAGCCGACATCGAAGAAA
TCATACTAGATAATGCCTCTGATTTGTCTGGTTCAACCCGCAGAATTTCACCACTTTCACACTTT
AATTCTATAACCTTTTATTTGCAATTTATTATAGCATCATGCAATGTCAACCAATCCATACCTAA
AATAACATCAAATCCTTACCTAA
Found at i:95251062 original size:48 final size:48
Alignment explanation
Indices: 95251004--95251224 Score: 190
Period size: 48 Copynumber: 4.7 Consensus size: 48
95250994 TGTGATCTTG
*
95251004 TGTAAGACCATGTCTAGGACATGGCATTGGCATC-ATTATGAGATC-CGA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGA-TATGAGATCAC-A
* * * *
95251052 TGTAATACCATGTTTGGGACATGGCATTGGCATCGACATGTGATCACA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATCACA
* * * *
95251100 TATAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGA-CATCG
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATCA-CA
* * * * *
95251148 TGTAAGACCATAG-CTGGG-C-T---ATCGGCTTCGATTTGTGATCCCA
1 TGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATATGAGATCACA
* * *
95251191 TGTAAGACCATATCTAGGATATGGCATTGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATC
95251225 TTATTATGTT
Statistics
Matches: 135, Mismatches: 27, Indels: 22
0.73 0.15 0.12
Matches are distributed among these distances:
43 30 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 2 0.01
48 98 0.73
49 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATCACA
Found at i:95251158 original size:96 final size:91
Alignment explanation
Indices: 95251006--95251228 Score: 231
Period size: 91 Copynumber: 2.4 Consensus size: 91
95250996 TGATCTTGTG
* * * *
95251006 TAAGACCATGTCTAGGACATGGCATTGGCATCATTATGAGATCCGATGTAATACCAT-GTTTGGG
1 TAAGACCATATCTAGGATATGGCATTGGCATCATTATGAGATCCGATGTAAGACCATAG-CTGGG
*
95251070 ACATGGCATTGGCATCGACATGTGATCACATA
65 -C-T---ATCGGCATCGACATGTGATCACATA
*
95251102 TAAGACCATATCTGGGATATGGCATTGGCATCGA-TATGAGA-CATCG-TGTAAGACCATAGCTG
1 TAAGACCATATCTAGGATATGGCATTGGCATC-ATTATGAGATC--CGATGTAAGACCATAGCTG
* ** * *
95251164 GGCTATCGGCTTCGATTTGTGATCCCATG
63 GGCTATCGGCATCGACATGTGATCACATA
95251193 TAAGACCATATCTAGGATATGGCATTGGCATC-TTAT
1 TAAGACCATATCTAGGATATGGCATTGGCATCATTAT
95251229 TATGTTTATG
Statistics
Matches: 110, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
90 3 0.03
91 50 0.45
94 1 0.01
95 2 0.02
96 50 0.45
97 4 0.04
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (91 bp):
TAAGACCATATCTAGGATATGGCATTGGCATCATTATGAGATCCGATGTAAGACCATAGCTGGGC
TATCGGCATCGACATGTGATCACATA
Found at i:95255582 original size:48 final size:47
Alignment explanation
Indices: 95255506--95255781 Score: 250
Period size: 48 Copynumber: 5.8 Consensus size: 47
95255496 TGATATGTGT
* * * *
95255506 GCCAGTGTAAGACCATGTTTGGAACATGGAATCGACGATGTTGTGAGA
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGC-ATGTCGTGAGA
* * *
95255554 GCCAATGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTGTGAGA
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGC-ATGTCGTGAGA
* * *** *
95255602 GCCAGTG-AAGACCATGTCTGGGACATGGTATCGGCCACAACATGAGA
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGG-CATGTCGTGAGA
* * * *
95255649 GCTAGTGTGAGACCATGTCTGGGACATGGCATCGGCAT-TGAGATGAGA
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATGT-CG-TGAGA
* * * * * * *
95255697 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGTCTTTGACATGTGA
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGC-ATGTCGTGAGA
* *
95255745 GCCAATGTAAGACCATGTTTGGAACATGGCATCGGCA
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCA
95255782 ATTCACCCTC
Statistics
Matches: 189, Mismatches: 33, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
47 38 0.20
48 150 0.79
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATGTCGTGAGA
Found at i:95255758 original size:96 final size:95
Alignment explanation
Indices: 95255549--95255783 Score: 310
Period size: 96 Copynumber: 2.5 Consensus size: 95
95255539 GACGATGTTG
*
95255549 TGAGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTGTGAGAGCCAGTGAAGAC
1 TGAGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGCAATGTAGTGAGAGCCAGTGAAGAC
*
95255614 CATGTCTGGGACATGGTATCGGCCACAACA
66 CATGTCTGGGACATGGCATCGGCCACAACA
* * * * * * *
95255644 TGAGAGCTAGTGTGAGACCATGTCTGGGACATGGCATCGGCATTG-AGATGAGAGCTAGTGTAAG
1 TGAGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGCAATGTAG-TGAGAGCCAGTG-AAG
* ****
95255708 ACCATGTCTGGGACATGGCATCGTCTTTGACA
64 ACCATGTCTGGGACATGGCATCGGCCACAACA
*
95255740 TGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGCAAT
1 TGAGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGCAAT
95255784 TCACCCTCTT
Statistics
Matches: 117, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
94 1 0.01
95 50 0.43
96 66 0.56
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (95 bp):
TGAGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGCAATGTAGTGAGAGCCAGTGAAGAC
CATGTCTGGGACATGGCATCGGCCACAACA
Found at i:95256745 original size:13 final size:13
Alignment explanation
Indices: 95256727--95256761 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
95256717 ACACACGGGT
*
95256727 GTGTGCCTTGGGC
1 GTGTGCCCTGGGC
95256740 GTGTGCCCTGGGC
1 GTGTGCCCTGGGC
95256753 GTGTGCCCT
1 GTGTGCCCT
95256762 TAATTGGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.00, C:0.29, G:0.43, T:0.29
Consensus pattern (13 bp):
GTGTGCCCTGGGC
Found at i:95259624 original size:40 final size:40
Alignment explanation
Indices: 95259440--95259621 Score: 276
Period size: 40 Copynumber: 4.5 Consensus size: 40
95259430 ACTACTTGCT
* *
95259440 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
*
95259480 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTGGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
95259520 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTTGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
95259560 CAAATGCCTTCGGGACTTAGCCTGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
95259600 CAAATGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
95259622 TGGTTATCAT
Statistics
Matches: 131, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.01
40 130 0.99
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:95267538 original size:40 final size:40
Alignment explanation
Indices: 95267486--95267663 Score: 288
Period size: 40 Copynumber: 4.5 Consensus size: 40
95267476 ACTACTTGCT
* *
95267486 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TATAGTAACTAGCA
95267526 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
*
95267566 CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
*
95267606 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
95267646 CAAATGCCTTCGGGACTT
1 CAAATGCCTTCGGGACTT
95267664 TGCTCGGTTA
Statistics
Matches: 131, Mismatches: 5, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
39 1 0.01
40 128 0.98
41 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:95275613 original size:40 final size:40
Alignment explanation
Indices: 95275515--95275737 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
95275505 TCCTCGTTCA
* * ** *
95275515 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
95275554 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
95275594 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
95275634 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
95275674 AATGCCTTCGGAACTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGACTTAACCCGGATTTA-ACAAC-TCGCACG
* *
95275714 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
95275738 CAGCATTCAA
Statistics
Matches: 167, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
39 35 0.21
40 126 0.75
41 6 0.04
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:95283499 original size:40 final size:40
Alignment explanation
Indices: 95283401--95283658 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
95283391 TCCTCGTTCA
* * ** *
95283401 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
95283440 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
95283480 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
95283520 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
95283560 AATGCCTTC-GGACTTAA-CCGGA-TT-A-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
95283595 AATGCCTTCGGAACTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGACTTAACCCGGATTTA-ACAAC-TCGCACG
* *
95283635 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
95283659 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 13, Indels: 15
0.88 0.06 0.07
Matches are distributed among these distances:
35 19 0.10
36 8 0.04
37 7 0.04
38 6 0.03
39 43 0.22
40 110 0.56
41 5 0.03
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:95283642 original size:115 final size:118
Alignment explanation
Indices: 95283399--95283658 Score: 325
Period size: 115 Copynumber: 2.2 Consensus size: 118
95283389 GCTCCTCGTT
* **
95283399 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAA-GCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACATAACCCGGA
* * *
95283464 TTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
65 TTTAACAACTCGCACGAATGCCTTCGGAACTTAACCCGGATATAACAACTAGCA
* * * *
95283518 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTC-GGACTTAA-CCGG
1 C-AAAGCCTTCGGGACTTAGCCCGGATTTAACAACTCACAC-AATGCCTTCGGGACATAACCCGG
* *
95283581 A-TT-A-AACTCGCACGAATGCCTTCGGAACTTAATCCGGATATATTC-ACTTAGCA
64 ATTTAACAACTCGCACGAATGCCTTCGGAACTTAACCCGGATATA-ACAAC-TAGCA
95283634 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
95283659 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
115 59 0.48
116 7 0.06
117 2 0.02
118 5 0.04
119 39 0.32
120 11 0.09
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (118 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACATAACCCGGAT
TTAACAACTCGCACGAATGCCTTCGGAACTTAACCCGGATATAACAACTAGCA
Found at i:95287247 original size:40 final size:40
Alignment explanation
Indices: 95287146--95287290 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
95287136 TACTCGAATG
* *
95287146 ATATTCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
95287187 ACATCCGGACTAAAAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCT-AAGTCCCGAAGGCATTTGTGCTAGCGACT
* * *
95287227 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
95287267 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
95287291 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.66
41 24 0.27
42 3 0.03
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:95294188 original size:40 final size:40
Alignment explanation
Indices: 95294087--95294231 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
95294077 TACTCGAATG
*
95294087 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
** * *
95294128 ACGTCCGGACTAAAAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCT-AAGTCCCGAAGGCATTTGTGCTAGCGACT
* * *
95294168 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
95294208 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
95294232 CTTGTGCGAG
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.66
41 24 0.27
42 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:95300477 original size:13 final size:13
Alignment explanation
Indices: 95300459--95300487 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
95300449 TTTAGTTTAA
95300459 TTAGTTAATTAGT
1 TTAGTTAATTAGT
95300472 TTAGTTAATTAGT
1 TTAGTTAATTAGT
95300485 TTA
1 TTA
95300488 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:95320967 original size:27 final size:27
Alignment explanation
Indices: 95320936--95321113 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
95320926 TAAATTGTAC
95320936 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
95320963 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
95320989 ATGCACAAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
95321017 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
95321045 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
95321072 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
95321099 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
95321114 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:95321082 original size:82 final size:81
Alignment explanation
Indices: 95320937--95321092 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
95320927 AAATTGTACA
* *
95320937 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACAAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACAAAGTGT
95321002 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** * *
95321018 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACAAAGT
*
95321082 GTGCGAGTTGA
64 GTGCGAATTGA
95321093 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACAAAGTGT
GCGAATTGACCATGCG
Found at i:95321104 original size:82 final size:81
Alignment explanation
Indices: 95320933--95321113 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
95320923 GATTAAATTG
* *
95320933 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACAAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACAAA
95320998 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** * *
95321014 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACA
* **
95321078 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
95321096 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
95321114 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACAAA
GTGTGCGAATTGACCA
Found at i:95329059 original size:54 final size:55
Alignment explanation
Indices: 95328999--95329149 Score: 216
Period size: 55 Copynumber: 2.8 Consensus size: 55
95328989 AAATTGTACA
*
95328999 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAAT-GAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGGAATATG-TG
* * * *
95329053 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAAATGGACTATGTG
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGGAATATGTG
* *
95329108 GCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGA
95329150 GTTGATTACA
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
54 42 0.49
55 43 0.51
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (55 bp):
GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAAATGGAATATGTG
Found at i:95329114 original size:82 final size:81
Alignment explanation
Indices: 95328999--95329154 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
95328989 AAATTGTACA
* * * *
95328999 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
95329063 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
95329080 GCACTAAGTGTGCGAAATGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCG-AATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
95329145 TGCGAGTTGA
65 TGCGAATTGA
95329155 TTACATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:95329158 original size:27 final size:27
Alignment explanation
Indices: 95328999--95329154 Score: 188
Period size: 27 Copynumber: 5.7 Consensus size: 27
95328989 AAATTGTACA
* *
95328999 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
95329026 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
95329053 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
95329080 GCACTAAGTGTGCGAAATGGACTATGTG
1 GCACTAAGTGTGCG-AATTGACTATGTG
* * *
95329108 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
95329135 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
95329155 TTACATAGCA
Statistics
Matches: 111, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
27 86 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:95329165 original size:27 final size:27
Alignment explanation
Indices: 95328999--95329175 Score: 144
Period size: 27 Copynumber: 6.5 Consensus size: 27
95328989 AAATTGTACA
* ** *
95328999 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTACATG
* * *
95329026 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTA-CATG
95329053 GCACTAAGTGTGCGAATTGAC--CATGCG
1 GCACTAAGTGTGCGAATTGACTACAT--G
* **
95329080 GCACTAAGTGTGCGAAATGGACTATGTG
1 GCACTAAGTGTGCG-AATTGACTACATG
* * *
95329108 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTACATG
* * *
95329135 GCACTAAGTGTGCGAGTTGATTACATA
1 GCACTAAGTGTGCGAATTGACTACATG
*
95329162 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
95329176 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
24 2 0.02
27 99 0.80
28 22 0.18
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTACATG
Found at i:95329166 original size:82 final size:80
Alignment explanation
Indices: 95328997--95329175 Score: 200
Period size: 82 Copynumber: 2.2 Consensus size: 80
95328987 TTAAATTGTA
* * * *
95328997 CAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGT
1 CAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
*
95329062 GTGCGAATTGACCAT
66 GTGCGAATTGAACAT
* ** *
95329077 GCGGCACTAAGTGTGCGAAATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TGGCACTA
1 -CAGCACTAAGTGTGCG-AATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACTA
*
95329141 AGTGTGCGAGTTGATTACAT
63 AGTGTGCGAATTGA--ACAT
*
95329161 -AGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCG
95329176 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
81 16 0.20
82 63 0.77
84 3 0.04
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (80 bp):
CAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAAGT
GTGCGAATTGAACAT
Found at i:95331399 original size:407 final size:408
Alignment explanation
Indices: 95330615--95331433 Score: 1514
Period size: 407 Copynumber: 2.0 Consensus size: 408
95330605 AATACTAAAC
*
95330615 TTGGAATGTTTGAAACTTTTATGTTCTTTTAGTTGAATTCTCAATGTATGATTACCTACGGATTA
1 TTGGAATGTTTGAAACTTTTATGTTCTTTTAGTTGAATTCTCAATGTATGATTACCTACAGATTA
95330680 TTTTGAGATATTATCGATAAGAATTATAAGTTGAGGAGAACTTACTTTGATTATAAGTTGAGGAT
66 TTTTGAGATATTATCGATAAGAATTATAAGTTGAGGAGAACTTACTTTGATTATAAGTTGAGGAT
95330745 TTTGCTTGGGGACAAGCAAATGCTTAAGTGTGGGGGTATTTGATAAACCGTAAATTATACATATT
131 TTTGCTTGGGGACAAGCAAATGCTTAAGTGTGGGGGTATTTGATAAACCGTAAATTATACATATT
*
95330810 TTTACCCTATGTTTAATGCATTTTATGGATGATTTCTCATTAGAATTAGTGAATTCAATGCTCCT
196 TTTACCCCATGTTTAATGCATTTTATGGATGATTTCTCATTAGAATTAGTGAATTCAATGCTCCT
95330875 AATGCTTTAATTTCATGTTTTATACTTAGGAGAGCATAGGAGAGTGAAAGGAACGAGAAACGGGC
261 AATGCTTTAATTTCATGTTTTATACTTAGGAGAGCATAGGAGAGTGAAAGGAACGAGAAACGGGC
* *
95330940 GAAAAATAGAGAAAATGGGCCAAAGTATGAAATCGACACGGCCTGAACCTCCTCACACGGGCAGA
326 GAAAAACAGAGAAAATGGGCCAAAGTACGAAATCGACACGGCCTGAACCTCCTCACACGGGCAGA
95331005 CCACACGGCCCTACCAAT
391 CCACACGGCCCTACCAAT
95331023 TTGGAATGTTTGAAACTTTTATGTT-TTTTAGTTGAATTCTCAATGTATGATTACCTACAGATTA
1 TTGGAATGTTTGAAACTTTTATGTTCTTTTAGTTGAATTCTCAATGTATGATTACCTACAGATTA
*
95331087 TTTTGAGATATTATCGATAAGAATTATAAGTTGAGGAGAATTTACTTTGATTATAAGTTGAGGAT
66 TTTTGAGATATTATCGATAAGAATTATAAGTTGAGGAGAACTTACTTTGATTATAAGTTGAGGAT
* **
95331152 TTTGCTTGGGGACAAGCAAATGCTTAAGTGTGGGGGTATTTGATAAACCTTAAATTATATGTATT
131 TTTGCTTGGGGACAAGCAAATGCTTAAGTGTGGGGGTATTTGATAAACCGTAAATTATACATATT
*
95331217 TTTACCCCATGTTTAATGCATTTTATGGATGATTTCTCATTAGAATTAGTGAATTCGATGCTCCT
196 TTTACCCCATGTTTAATGCATTTTATGGATGATTTCTCATTAGAATTAGTGAATTCAATGCTCCT
95331282 AATGCTTTAATTTCATGTTTTATACTTAGGAGAGCATAGGAGAGTGAAAGGAACGAGAAACGGGC
261 AATGCTTTAATTTCATGTTTTATACTTAGGAGAGCATAGGAGAGTGAAAGGAACGAGAAACGGGC
* *
95331347 GAAAAACAGAGAAAATGGGCCAAAGTACGAAATTGACACGGCCTGGACCTCCTCACACGGGCAGA
326 GAAAAACAGAGAAAATGGGCCAAAGTACGAAATCGACACGGCCTGAACCTCCTCACACGGGCAGA
* *
95331412 CCACACGGCCGTGCCAAT
391 CCACACGGCCCTACCAAT
95331430 TTGG
1 TTGG
95331434 TAGGCTCGAA
Statistics
Matches: 398, Mismatches: 13, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
407 373 0.94
408 25 0.06
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.33
Consensus pattern (408 bp):
TTGGAATGTTTGAAACTTTTATGTTCTTTTAGTTGAATTCTCAATGTATGATTACCTACAGATTA
TTTTGAGATATTATCGATAAGAATTATAAGTTGAGGAGAACTTACTTTGATTATAAGTTGAGGAT
TTTGCTTGGGGACAAGCAAATGCTTAAGTGTGGGGGTATTTGATAAACCGTAAATTATACATATT
TTTACCCCATGTTTAATGCATTTTATGGATGATTTCTCATTAGAATTAGTGAATTCAATGCTCCT
AATGCTTTAATTTCATGTTTTATACTTAGGAGAGCATAGGAGAGTGAAAGGAACGAGAAACGGGC
GAAAAACAGAGAAAATGGGCCAAAGTACGAAATCGACACGGCCTGAACCTCCTCACACGGGCAGA
CCACACGGCCCTACCAAT
Found at i:95335247 original size:54 final size:54
Alignment explanation
Indices: 95335165--95335276 Score: 224
Period size: 54 Copynumber: 2.1 Consensus size: 54
95335155 ATTAATTAGG
95335165 GTTTGTTTCCACAGAACAGAATCTTACTACAGTTTTTAGTCTTCTATAGTCCCA
1 GTTTGTTTCCACAGAACAGAATCTTACTACAGTTTTTAGTCTTCTATAGTCCCA
95335219 GTTTGTTTCCACAGAACAGAATCTTACTACAGTTTTTAGTCTTCTATAGTCCCA
1 GTTTGTTTCCACAGAACAGAATCTTACTACAGTTTTTAGTCTTCTATAGTCCCA
95335273 GTTT
1 GTTT
95335277 ACTCTAACTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.40
Consensus pattern (54 bp):
GTTTGTTTCCACAGAACAGAATCTTACTACAGTTTTTAGTCTTCTATAGTCCCA
Found at i:95336125 original size:28 final size:28
Alignment explanation
Indices: 95336081--95336145 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 28
95336071 TATTTAGTAT
* * *
95336081 CAGT-ACAGTCTGGGCCTTAGCCCTATA
1 CAGTAACAGTCTGAGCCTAAGCCCAATA
* *
95336108 CAGTAACAGTGTGAGCCTAAGCCCAATT
1 CAGTAACAGTCTGAGCCTAAGCCCAATA
*
95336136 CAGTATCAGT
1 CAGTAACAGT
95336146 ACAGTGCAGT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
27 4 0.13
28 27 0.87
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.25
Consensus pattern (28 bp):
CAGTAACAGTCTGAGCCTAAGCCCAATA
Found at i:95336352 original size:28 final size:26
Alignment explanation
Indices: 95336287--95336352 Score: 64
Period size: 28 Copynumber: 2.4 Consensus size: 26
95336277 AGCAATGCTG
95336287 CTAATAACAGTAAACGTGGCAAAGCCA
1 CTAAT-ACAGTAAACGTGGCAAAGCCA
*
95336314 CCAGAGT--AGTAATTACGTGGCAAAGCCA
1 CTA-A-TACAGTAA--ACGTGGCAAAGCCA
95336342 CTAATACAGTA
1 CTAATACAGTA
95336353 CTTCGTCCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 11
0.70 0.05 0.25
Matches are distributed among these distances:
26 6 0.19
27 3 0.10
28 21 0.68
29 1 0.03
ACGTcount: A:0.41, C:0.21, G:0.20, T:0.18
Consensus pattern (26 bp):
CTAATACAGTAAACGTGGCAAAGCCA
Found at i:95349763 original size:16 final size:16
Alignment explanation
Indices: 95349744--95349775 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
95349734 TCGGCAAATC
95349744 CCGAAATGTCAAAAAG
1 CCGAAATGTCAAAAAG
*
95349760 CCGAAATGTCGAAAAG
1 CCGAAATGTCAAAAAG
95349776 TCAAAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (16 bp):
CCGAAATGTCAAAAAG
Found at i:95350046 original size:28 final size:29
Alignment explanation
Indices: 95349993--95350052 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 29
95349983 AAAGCATGAC
*
95349993 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGAGATTTGGGCCTAATGGGCCA
* *
95350022 TATGAATGAGA-TTGGGCCTAGTGGGCTA
1 TATGAATGAGATTTGGGCCTAATGGGCCA
95350050 TAT
1 TAT
95350053 ACATGTATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 18 0.64
29 10 0.36
ACGTcount: A:0.25, C:0.12, G:0.32, T:0.32
Consensus pattern (29 bp):
TATGAATGAGATTTGGGCCTAATGGGCCA
Found at i:95361102 original size:23 final size:22
Alignment explanation
Indices: 95361066--95361108 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
95361056 TATATCCGTA
* *
95361066 CCAAATCATGCCAAATCATAAG
1 CCAAATCATACCAAAACATAAG
95361088 CCAAAGTCATACCAAAACATA
1 CCAAA-TCATACCAAAACATA
95361109 TGTTTCATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.49, C:0.28, G:0.07, T:0.16
Consensus pattern (22 bp):
CCAAATCATACCAAAACATAAG
Found at i:95361621 original size:155 final size:155
Alignment explanation
Indices: 95361339--95361645 Score: 533
Period size: 155 Copynumber: 2.0 Consensus size: 155
95361329 AAACATATCA
*
95361339 CAATTTATCTAGACAATACATGCCATACTTTAATATTTACACTTTCAAAAAGTACCAAAGGTAAG
1 CAATTTATCTAGACAATACATGCCATACTTTAATATTTACACTTTCAAAAAGTACCAAAGATAAG
95361404 TTTGATAGTGTGGTGATGATCCTCAACAATCCTCGAGCCTACAGTAGCTTCGATATCTAAAACAC
66 TTTGATAGTGTGGTGATGATCCTCAACAATCCTCGAGCCTACAGTAGCTTCGATATCTAAAACAC
* *
95361469 AATGCAAACACATATAAAGTAATCT
131 AATGCAAACACACACAAAGTAATCT
* *
95361494 CAATTTATCTAGACTATACATGCCATACTTTAATATTTACACTTTCAAAAAGTATCAAAGATAAG
1 CAATTTATCTAGACAATACATGCCATACTTTAATATTTACACTTTCAAAAAGTACCAAAGATAAG
* * *
95361559 TTTGATAGTGTGGTGATGATCCTCGACAATCCTCGAGCTTCCAGTAGCTTCGATATCTAAAACAC
66 TTTGATAGTGTGGTGATGATCCTCAACAATCCTCGAGCCTACAGTAGCTTCGATATCTAAAACAC
*
95361624 AATGCAAGCACACACAAAGTAA
131 AATGCAAACACACACAAAGTAA
95361646 GCTTTCAAAA
Statistics
Matches: 143, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
155 143 1.00
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.29
Consensus pattern (155 bp):
CAATTTATCTAGACAATACATGCCATACTTTAATATTTACACTTTCAAAAAGTACCAAAGATAAG
TTTGATAGTGTGGTGATGATCCTCAACAATCCTCGAGCCTACAGTAGCTTCGATATCTAAAACAC
AATGCAAACACACACAAAGTAATCT
Found at i:95376869 original size:50 final size:50
Alignment explanation
Indices: 95376752--95377182 Score: 257
Period size: 50 Copynumber: 8.6 Consensus size: 50
95376742 TGTGAGAACA
* * * * ** *
95376752 CATGTGTAGTACTATGTGCGGGCTACTATGTGT-TTAAGATAGTTTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGAT--TGCTAGGTCG
* *
95376804 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGCTAGGTTG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGCTAGGTCG
* * * * * * * *
95376854 CATGTGTAGTACTAAGTACAGGCTACTATGCGTACTCG-TTAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATT-GC-TAGGTCG
* * * * ** *
95376905 CGTGTGTAGTATTAAGTGCAGGCTACTACGTGTA-TCAGATGGTTAACTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATTGCTAGGTCG
* * * *
95376955 CATGTTTAGTACTAATTGCTA-GCTACTACGTGTA-TCA-AATGATAGGTCG
1 CATGTGTAGTACTAAGTGC-AGGCTACTACGTGTACT-AGATTGCTAGGTCG
* * * * * * * *
95377004 CATATGTACTACTAAGTGCAGGCTACTATGCGTACCT-G-TTAACTTTGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CTAGATT-GC-TAGGTCG
* ** * * * * * *
95377055 CGTGTGTAGTACTAAGTGCAGGCTACTATATGTACCATATGGTTAAGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGCTAGGTCG
* * * *
95377105 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGCTAGGTCG
*
95377155 CATGTGTAGTTCTAAGTGCAGGCTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTA
95377183 TGCGTACCAG
Statistics
Matches: 290, Mismatches: 75, Indels: 30
0.73 0.19 0.08
Matches are distributed among these distances:
48 1 0.00
49 35 0.12
50 150 0.52
51 68 0.23
52 35 0.12
53 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGCTAGGTCG
Found at i:95377140 original size:101 final size:99
Alignment explanation
Indices: 95376754--95377140 Score: 270
Period size: 101 Copynumber: 3.8 Consensus size: 99
95376744 TGAGAACACA
* * ** * *
95376754 TGTGTAGTACTATGTGCGGGCTACTATGTGTTTAAGATAGTTTTAGGTCACGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTG--TACCATA-TGTTAAGTCACGTGTGTAGTACTAA
* ** *
95376819 GTGCAGGCTACTACGTGTA-CTAGATT-GCTAGGTTGCA-
63 GTGCAGGCTACTACGTGTACCT-G-TTAACTTTGAT-CAC
* * * ** * *
95376856 TGTGTAGTACTAAGTACAGGCTACTATGCGTACTCGTTAACTT-CGATCACGTGTGTAGTATTAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-C-ATATGTTAAG-TCACGTGTGTAGTACTAA
* *
95376920 GTGCAGGCTACTACGTGTATCAGATGGTTAAC--TCA-CA-
63 GTGCAGGCTACTACGTGTA-C--CT-GTTAACTTTGATCAC
* * * * * * * * * * *
95376957 TGTTTAGTACTAATTGCTA-GCTACTACGTGTATCAAATGATAGGTCGCATATGTACTACTAAGT
1 TGTGTAGTACTAAGTGC-AGGCTACTATGTGTACCATATGTTAAGTCACGTGTGTAGTACTAAGT
* *
95377021 GCAGGCTACTATGCGTACCTGTTAACTTTGATCAC
65 GCAGGCTACTACGTGTACCTGTTAACTTTGATCAC
*
95377056 GTGTGTAGTACTAAGTGCAGGCTACTATATGTACCATATGGTTAAGTCACGTGTGTAGTACTAAG
1 -TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCATAT-GTTAAGTCACGTGTGTAGTACTAAG
95377121 TGCAGGCTACTACGTGTACC
64 TGCAGGCTACTACGTGTACC
95377141 AAATTGATAG
Statistics
Matches: 216, Mismatches: 52, Indels: 35
0.71 0.17 0.12
Matches are distributed among these distances:
95 6 0.03
96 1 0.00
97 2 0.01
98 3 0.01
99 33 0.15
100 35 0.16
101 102 0.47
102 29 0.13
104 2 0.01
105 3 0.01
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCATATGTTAAGTCACGTGTGTAGTACTAAGTG
CAGGCTACTACGTGTACCTGTTAACTTTGATCAC
Found at i:95377190 original size:50 final size:50
Alignment explanation
Indices: 95376797--95377191 Score: 287
Period size: 50 Copynumber: 7.9 Consensus size: 50
95376787 AAGATAGTTT
* * * *
95376797 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGC
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
** * * * * *
95376847 TAGGTTGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACTC--GTTAA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAAATTGA
* * * * * * * *
95376896 CTTCGATCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTATCAGATGGT
1 --TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
** * * *
95376948 TAACTCACATGTTTAGTACTAATTGCTA-GCTACTACGTGTATCAAA-TGA
1 TAGGTCACATGTGTAGTACTAAGTGC-AGGCTACTACGTGTACCAAATTGA
* * * * * ** *
95376997 TAGGTCGCATATGTACTACTAAGTGCAGGCTACTATGCGTACC-TGTTAA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
* * * ** * * *
95377046 CTTTGATCACGTGTGTAGTACTAAGTGCAGGCTACTATATGTACCATATGGT
1 --TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
* *
95377098 TAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
* * * *
95377148 TAGGTCGCATGTGTAGTTCTAAGTGCAGGCTACTATGCGTACCA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
95377192 GAGAGCTTCG
Statistics
Matches: 261, Mismatches: 73, Indels: 22
0.73 0.21 0.06
Matches are distributed among these distances:
48 1 0.00
49 36 0.14
50 153 0.59
51 68 0.26
52 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGA
Found at i:95377227 original size:150 final size:150
Alignment explanation
Indices: 95376800--95377190 Score: 570
Period size: 150 Copynumber: 2.6 Consensus size: 150
95376790 ATAGTTTTAG
* * * *
95376800 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGCTAGGTTGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGTA
* *
95376865 CTAAGTACAGGCTACTATGCGTACTCGTTAACTTCGATCACGTGTGTAGTATTAAGTGCAGGCTA
66 CTAAGTGCAGGCTACTATGCGTAC-CGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTA
* *
95376930 CTACGTGTATCAGATGGTTAA
130 CTACATGTACCAGATGGTTAA
* * * * * * *
95376951 CTCACATGTTTAGTACTAATTGCTA-GCTACTACGTGTATCAAA-TGATAGGTCGCATATGTACT
1 GTCACGTGTGTAGTACTAAGTGC-AGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGT
*
95377014 ACTAAGTGCAGGCTACTATGCGTACCTGTTAACTTTGATCACGTGTGTAGTACTAAGTGCAGGCT
65 ACTAAGTGCAGGCTACTATGCGTACC-GTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
* *
95377079 ACTATATGTACCATATGGTTAA
129 ACTACATGTACCAGATGGTTAA
*
95377101 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGTT
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGTA
95377166 CTAAGTGCAGGCTACTATGCGTACC
66 CTAAGTGCAGGCTACTATGCGTACC
95377191 AGAGAGCTTC
Statistics
Matches: 210, Mismatches: 26, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
149 2 0.01
150 130 0.62
151 77 0.37
152 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (150 bp):
GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCATGTGTAGTA
CTAAGTGCAGGCTACTATGCGTACCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTAC
TACATGTACCAGATGGTTAA
Found at i:95381622 original size:17 final size:18
Alignment explanation
Indices: 95381591--95381624 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
95381581 CATATTACGA
95381591 GCCCATGTAGGCCCACAC
1 GCCCATGTAGGCCCACAC
95381609 GCCCATGT-GGCCCACA
1 GCCCATGTAGGCCCACA
95381625 TAGCCCAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.21, C:0.44, G:0.24, T:0.12
Consensus pattern (18 bp):
GCCCATGTAGGCCCACAC
Found at i:95381630 original size:18 final size:18
Alignment explanation
Indices: 95381590--95381631 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
95381580 CCATATTACG
95381590 AGCCCATGTAGGCCCACA
1 AGCCCATGTAGGCCCACA
*
95381608 CGCCCATGT-GGCCCACA
1 AGCCCATGTAGGCCCACA
95381625 TAGCCCA
1 -AGCCCA
95381632 GAAATGGCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.24, C:0.43, G:0.21, T:0.12
Consensus pattern (18 bp):
AGCCCATGTAGGCCCACA
Found at i:95390609 original size:14 final size:14
Alignment explanation
Indices: 95390598--95390624 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
95390588 TAAAAAATGC
95390598 AAAAATAAAAATAA
1 AAAAATAAAAATAA
95390612 AAAAATAAAAATA
1 AAAAATAAAAATA
95390625 GGGCTTAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (14 bp):
AAAAATAAAAATAA
Found at i:95392702 original size:17 final size:18
Alignment explanation
Indices: 95392680--95392714 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
95392670 ACCCATTCAT
*
95392680 ATGTCTA-TACGAATTTA
1 ATGTCTAGTAAGAATTTA
95392697 ATGTCTAGTAAGAATTTA
1 ATGTCTAGTAAGAATTTA
95392715 CCTATTGAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (18 bp):
ATGTCTAGTAAGAATTTA
Found at i:95394217 original size:40 final size:40
Alignment explanation
Indices: 95394099--95394218 Score: 116
Period size: 40 Copynumber: 3.0 Consensus size: 40
95394089 CACATTAAAT
* * * *
95394099 CGAAGCTATCTCGATATTGTACACTTAGTGCCACATAAAGC
1 CGAAGCTATCTCGA-ATTGCACACTAAGTGCCAAATATAGC
* * ****
95394140 CGAAGGTAT-TCCAATTTGCACACTAAGTGTTGTATATAGC
1 CGAAGCTATCTCGAA-TTGCACACTAAGTGCCAAATATAGC
*
95394180 CGAAGCTATCTCGAAATGCACACTAAGTGCCAAATATAG
1 CGAAGCTATCTCGAATTGCACACTAAGTGCCAAATATAG
95394219 TAGATTTGTC
Statistics
Matches: 61, Mismatches: 16, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
39 1 0.02
40 48 0.79
41 12 0.20
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (40 bp):
CGAAGCTATCTCGAATTGCACACTAAGTGCCAAATATAGC
Found at i:95395399 original size:9 final size:9
Alignment explanation
Indices: 95395360--95395384 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
95395350 AGAATGGCTC
95395360 TGAAAGAGT
1 TGAAAGAGT
95395369 TGAAAGAGT
1 TGAAAGAGT
95395378 TGAAAGA
1 TGAAAGA
95395385 TCAGTTGCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.32, T:0.20
Consensus pattern (9 bp):
TGAAAGAGT
Found at i:95400822 original size:49 final size:50
Alignment explanation
Indices: 95400750--95400983 Score: 267
Period size: 49 Copynumber: 4.7 Consensus size: 50
95400740 TGAGGCCACG
* *
95400750 TGTGTAGTACTAATTGCAGGCTACTACGTGTACCAGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
* * * * *
95400799 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGGTCACA
* * * ** *
95400850 TGTGTAGTACTAAGTGCAAGCTACTACGTATATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
* * *
95400900 TGTGTAGTACTAAGTGTAGGCTACTACGTGTA-CATTATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-GATAATTAGGTCACA
* *
95400949 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
95400984 AATAGGTTTT
Statistics
Matches: 155, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
49 73 0.47
50 45 0.29
51 37 0.24
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
Done.