Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 281 of 373
Found at i:95404109 original size:40 final size:40
Alignment explanation
Indices: 95404054--95404133 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
95404044 TTCAACATTA
95404054 GAAGTAAACTCACTTTGAACTCATTTAGATTACCATTCAT
1 GAAGTAAACTCACTTTGAACTCATTTAGATTACCATTCAT
95404094 GAAGTAAACTCACTTTGAACTCATTTAGATTACCATTCAT
1 GAAGTAAACTCACTTTGAACTCATTTAGATTACCATTCAT
95404134 TATCACATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (40 bp):
GAAGTAAACTCACTTTGAACTCATTTAGATTACCATTCAT
Found at i:95416653 original size:79 final size:79
Alignment explanation
Indices: 95416521--95416744 Score: 369
Period size: 79 Copynumber: 2.8 Consensus size: 79
95416511 GGATTGATAC
* *
95416521 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
95416586 TGCGAGTTACTAT-A
65 TGCGAGTTACTATCA
*
95416600 TCCGGGCTAAGTCCGAAGGCATTTGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 -CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
95416665 TGCGAGTTACTATCA
65 TGCGAGTTACTATCA
* *
95416680 CCAGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
95416745 AGCTAGTAGC
Statistics
Matches: 136, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
79 75 0.55
80 61 0.45
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTATCA
Found at i:95416732 original size:119 final size:120
Alignment explanation
Indices: 95416521--95416744 Score: 382
Period size: 119 Copynumber: 1.9 Consensus size: 120
95416511 GGATTGATAC
95416521 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTG
* *
95416586 TGCGAGTTACTATATCCGGGCTAAGT-CCGAAGGCATTTGTACGAGTTACTATAA
66 TGCGAGTTACTATAACCGGGCTAAGTCCCAAAGGCATTTGTACGAGTTACTATAA
*
95416640 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATCA-CC-AGGCTAAGTCCTGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-ATCCGA-GCTAAGTCCCGAAGGCATT
95416703 TGTGCGAGTTACTATAACCGGGCTAAGTCCCAAAGGCATTTG
64 TGTGCGAGTTACTATAACCGGGCTAAGTCCCAAAGGCATTTG
95416745 AGCTAGTAGC
Statistics
Matches: 99, Mismatches: 3, Indels: 5
0.93 0.03 0.05
Matches are distributed among these distances:
118 1 0.01
119 85 0.86
120 13 0.13
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAACCGGGCTAAGTCCCAAAGGCATTTGTACGAGTTACTATAA
Found at i:95416758 original size:40 final size:40
Alignment explanation
Indices: 95416521--95416744 Score: 369
Period size: 40 Copynumber: 5.6 Consensus size: 40
95416511 GGATTGATAC
*
95416521 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
95416561 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
95416601 CCGGGCTAAGT-CCGAAGGCATTTGTACGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
95416640 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
95416680 CCAGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
95416720 CCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
95416745 AGCTAGTAGC
Statistics
Matches: 171, Mismatches: 12, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
39 37 0.22
40 134 0.78
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:95421763 original size:21 final size:21
Alignment explanation
Indices: 95421738--95421806 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
95421728 TAGCCTTCAG
*
95421738 GCTTCTGTTTAGCATTTGTGT
1 GCTTCAGTTTAGCATTTGTGT
* *
95421759 GCTTCAG-TTAGCCTTCG-G-
1 GCTTCAGTTTAGCATTTGTGT
* *
95421777 GCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTTAGCATTTGTGT
95421798 GCTTCAGTT
1 GCTTCAGTT
95421807 AGCCTTCGAG
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
18 6 0.16
19 8 0.22
20 9 0.24
21 14 0.38
ACGTcount: A:0.10, C:0.22, G:0.25, T:0.43
Consensus pattern (21 bp):
GCTTCAGTTTAGCATTTGTGT
Found at i:95421774 original size:39 final size:39
Alignment explanation
Indices: 95421720--95421858 Score: 215
Period size: 39 Copynumber: 3.6 Consensus size: 39
95421710 GCTCTGATGA
* * *
95421720 GCTTCAGTTAGCCTTCAGGCTTCTGTTTAGCATTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
95421759 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
95421798 GCTTCAGTTAGCCTTCGAGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
95421837 GCTTCAGCTAGACTTCGGGCTT
1 GCTTCAGTTAGCCTTCGGGCTT
95421859 TAAATCGCGA
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 92 1.00
ACGTcount: A:0.13, C:0.24, G:0.24, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:95426595 original size:21 final size:21
Alignment explanation
Indices: 95426571--95426634 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 21
95426561 AGCCTTCAGG
*
95426571 CTTCCGTTTAGCACTTGTGTG
1 CTTCCGTTTAGCACTTGTGTA
* * *
95426592 CTTCAGTTT-GC-CTT-CGCA
1 CTTCCGTTTAGCACTTGTGTA
95426610 CTTCCGTTTAGCACTTGTGTA
1 CTTCCGTTTAGCACTTGTGTA
95426631 CTTC
1 CTTC
95426635 AGTTAGCCTT
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 9 0.27
19 5 0.15
20 5 0.15
21 14 0.42
ACGTcount: A:0.11, C:0.28, G:0.19, T:0.42
Consensus pattern (21 bp):
CTTCCGTTTAGCACTTGTGTA
Found at i:95426606 original size:39 final size:39
Alignment explanation
Indices: 95426552--95426675 Score: 153
Period size: 39 Copynumber: 3.2 Consensus size: 39
95426542 GCTCTGATGA
*
95426552 GCTTCTGTTAGCCTTC-AGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGA-GCTTCCGTTTAGCACTTGTGT
*
95426591 GCTTCAGTTTGCCTTCGCA-CTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCG-AGCTTCCGTTTAGCACTTGTGT
* ** * *
95426630 ACTTCAGTTAGCCTTCGAGCTTCCAATAAGCACTTATGT
1 GCTTCAGTTAGCCTTCGAGCTTCCGTTTAGCACTTGTGT
95426669 GCTTCAG
1 GCTTCAG
95426676 CTAGACTTTG
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 71 0.97
41 1 0.01
ACGTcount: A:0.15, C:0.27, G:0.20, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGAGCTTCCGTTTAGCACTTGTGT
Found at i:95427260 original size:12 final size:12
Alignment explanation
Indices: 95427243--95427272 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
95427233 CAAAAAAATC
95427243 TTATTTTATGAT
1 TTATTTTATGAT
95427255 TTATTTTATGAT
1 TTATTTTATGAT
*
95427267 ATATTT
1 TTATTT
95427273 GAATTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (12 bp):
TTATTTTATGAT
Found at i:95429130 original size:8 final size:8
Alignment explanation
Indices: 95429117--95429156 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
95429107 CTAGATCGGT
*
95429117 AAAAGCCA
1 AAAAGCCG
95429125 AAAAGCCG
1 AAAAGCCG
*
95429133 AAATGCCG
1 AAAAGCCG
*
95429141 AAATGCCG
1 AAAAGCCG
95429149 AAAAGCCG
1 AAAAGCCG
95429157 GTATTTTGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.47, C:0.25, G:0.23, T:0.05
Consensus pattern (8 bp):
AAAAGCCG
Found at i:95429601 original size:27 final size:26
Alignment explanation
Indices: 95429571--95429682 Score: 107
Period size: 27 Copynumber: 4.2 Consensus size: 26
95429561 AGGAAGCGTC
* *
95429571 CTGGTGGCTATACCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* * *
95429598 CTGGTGACTCTGCCACATATATTTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
95429625 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * * *
95429653 CTGGTGACTTTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
95429679 CTGG
1 CTGG
95429683 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 7 0.10
27 47 0.67
28 16 0.23
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:95429679 original size:54 final size:54
Alignment explanation
Indices: 95429571--95429682 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
95429561 AGGAAGCGTC
*
95429571 CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATTTGTT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * * *
95429625 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTTTGTCACAT-TATCTGTT
1 CTGGTGGCTATACCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
95429679 CTGG
1 CTGG
95429683 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:95437134 original size:27 final size:26
Alignment explanation
Indices: 95437104--95437203 Score: 101
Period size: 27 Copynumber: 3.7 Consensus size: 26
95437094 AGTGGCTACA
*
95437104 CCACAATTATCTGATCTAGTGACTCTG
1 CCAC-ATTATCTGATCTGGTGACTCTG
* *
95437131 CCACATATATCTGTTCTGGTGGCTCTG
1 CCACAT-TATCTGATCTGGTGACTCTG
* *
95437158 CCACGATTATCTGTGTCTGGTGACTTTG
1 CCAC-ATTATCTG-ATCTGGTGACTCTG
* *
95437186 TCACATTATCTGTTCTGG
1 CCACATTATCTGATCTGG
95437204 CAGCCATGCT
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
26 7 0.11
27 39 0.63
28 16 0.26
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (26 bp):
CCACATTATCTGATCTGGTGACTCTG
Found at i:95465723 original size:106 final size:106
Alignment explanation
Indices: 95465538--95465748 Score: 395
Period size: 106 Copynumber: 2.0 Consensus size: 106
95465528 AGTATTACTA
95465538 GAGCATAACATCTTCTACTAAACATTTTATTATCATAAACAAATCACATCGTAAATCAGAGTATC
1 GAGCATAACATCTTCTACTAAACATTTTATTATCATAAACAAATCACATCGTAAATCAGAGTATC
95465603 ATCAACCAAAATCATACATATAGTCCCTTTTACAAGCCCTT
66 ATCAACCAAAATCATACATATAGTCCCTTTTACAAGCCCTT
* *
95465644 GAGCATAACATCTTCTACTGAACATTTTATTATCATAAACAAATCACATTGTAAATCAGAGTATC
1 GAGCATAACATCTTCTACTAAACATTTTATTATCATAAACAAATCACATCGTAAATCAGAGTATC
*
95465709 ATCAACCAAAATCATACATATAGTCCCTTTTTCAAGCCCT
66 ATCAACCAAAATCATACATATAGTCCCTTTTACAAGCCCT
95465749 CGAGGCCTTA
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 102 1.00
ACGTcount: A:0.39, C:0.23, G:0.07, T:0.31
Consensus pattern (106 bp):
GAGCATAACATCTTCTACTAAACATTTTATTATCATAAACAAATCACATCGTAAATCAGAGTATC
ATCAACCAAAATCATACATATAGTCCCTTTTACAAGCCCTT
Found at i:95484639 original size:39 final size:39
Alignment explanation
Indices: 95484427--95484681 Score: 300
Period size: 40 Copynumber: 6.8 Consensus size: 39
95484417 TGGATGATAA
* * *
95484427 CCGGGCTAAGTCCGAAGGCATTTG-GCTAGTGAC--TGT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAT
*
95484463 CCGGG-TAAGTCCGAAGGCAGTTGTGCGA-TTACTATAT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAT
95484500 -C-GGCTAAGTCC-AAGGCA-TTGTGCG-GTTA-TATAT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
95484533 -CTGGCTAAGTTCGAAGGCATTTGAGCGAGTTACTATAT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAT
* *
95484571 CTGGGCTAAGTCCCGAAGGCATTTCTGCGAGTTACTATAT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
*
95484611 CCGGGCTAAGTCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAT
* *
95484650 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGT
95484682 AGCTATACCA
Statistics
Matches: 189, Mismatches: 17, Indels: 22
0.83 0.07 0.10
Matches are distributed among these distances:
33 6 0.03
34 19 0.10
35 34 0.18
36 22 0.12
37 6 0.03
38 5 0.03
39 44 0.23
40 53 0.28
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:95484688 original size:79 final size:78
Alignment explanation
Indices: 95484427--95484681 Score: 295
Period size: 79 Copynumber: 3.4 Consensus size: 78
95484417 TGGATGATAA
* * *
95484427 CCGGGCTAAGT-CCGAAGGCATTTG-GCTAGTGAC--TGTCCGGG-TAAGTCCGAAGGCAGTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCA-TTGT
95484487 GCGA-TTACTATAT
65 GCGAGTTACTATAT
* * *
95484500 -C-GGCTAAGT-CC-AAGGCA-TTGTGCG-GTTA-TATAT-CTGGCTAAGTTCGAAGGCATTTGA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCA-TTGT
95484557 GCGAGTTACTATAT
65 GCGAGTTACTATAT
* *
95484571 CTGGGCTAAGTCCCGAAGGCATTTCTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTGGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATT-GT
95484636 GCGAGTTACTATAT
65 GCGAGTTACTATAT
* *
95484650 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
95484682 AGCTATACCA
Statistics
Matches: 152, Mismatches: 16, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
69 9 0.06
70 30 0.20
71 19 0.12
72 1 0.01
73 8 0.05
74 2 0.01
75 6 0.04
76 6 0.04
77 4 0.03
78 7 0.05
79 60 0.39
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTGTG
CGAGTTACTATAT
Found at i:95489416 original size:40 final size:39
Alignment explanation
Indices: 95489335--95489556 Score: 232
Period size: 40 Copynumber: 5.6 Consensus size: 39
95489325 AATGATGTCA
* * * *
95489335 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATCC
* * *
95489375 GGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATCC
* * * *
95489415 GGTCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCT
1 GGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCC
* *
95489454 GGGTTATGTCCTGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTAAATCC
*
95489494 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
95489534 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGT-CCGAAGGCATTTG
95489557 AACGAGGAGC
Statistics
Matches: 155, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 33 0.21
40 110 0.71
41 12 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
GGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:95489542 original size:80 final size:79
Alignment explanation
Indices: 95489338--95489556 Score: 257
Period size: 80 Copynumber: 2.7 Consensus size: 79
95489328 GATGTCAGGG
* * * * * *
95489338 CTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCG
1 CTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCGAAGGCATTTGTGCG
*
95489402 AGATACTAATTCCGGT
64 AGATACTAAATCCGGT
* * *
95489418 CTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCTGGGTTATGTCCTGAAGGCATTTGTGCG
1 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCC-GAAGGCATTTGTGCG
*
95489481 AGTTACTAAATCCGGGT
64 AGATACTAAATCC-GGT
95489498 -TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGT-CCGAAGGCATTTG
95489557 AACGAGGAGC
Statistics
Matches: 118, Mismatches: 14, Indels: 14
0.81 0.10 0.10
Matches are distributed among these distances:
78 4 0.03
79 51 0.43
80 59 0.50
81 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCGAAGGCATTTGTGCGAG
ATACTAAATCCGGT
Found at i:95489574 original size:80 final size:79
Alignment explanation
Indices: 95489385--95489589 Score: 220
Period size: 80 Copynumber: 2.6 Consensus size: 79
95489375 GGACTAAGAT
** *
95489385 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGTCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGT-TAAGTCCCGAAGGCATTGGTGCGAGTTACT
* *
95489448 AAATCTGGGTTATGTC
64 AAATCCGGGCTATGTC
* ** * *
95489464 CTGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA
95489529 TAA-CCGGGCTATGTC
65 -AATCCGGGCTATGTC
* * *
95489544 CCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAGTCCCGAAGG
95489590 TACGTGATTT
Statistics
Matches: 109, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 45 0.41
80 61 0.56
81 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAA
ATCCGGGCTATGTC
Found at i:95499194 original size:56 final size:56
Alignment explanation
Indices: 95499097--95499229 Score: 187
Period size: 56 Copynumber: 2.4 Consensus size: 56
95499087 ATGGCATCGG
* * *
95499097 TATATGTGTGCGAGTAAGACCATGTTTAACACGTTGGCATCGATATGTGATTAT-GA
1 TATATGTCTGCGAGTAAGACCACGTTTAACACGTTGACATCGATATGTGATT-TCGA
* *
95499153 TATATGTCTGCGAGTAAGACCACGTTTAATATGTTGACATCGATATGTGATTTCGA
1 TATATGTCTGCGAGTAAGACCACGTTTAACACGTTGACATCGATATGTGATTTCGA
* *
95499209 TATACGTTTGCGAGTAAGACC
1 TATATGTCTGCGAGTAAGACC
95499230 CTGTCTAGGA
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 1 0.01
56 68 0.99
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (56 bp):
TATATGTCTGCGAGTAAGACCACGTTTAACACGTTGACATCGATATGTGATTTCGA
Found at i:95499467 original size:16 final size:16
Alignment explanation
Indices: 95499448--95499478 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95499438 TGGTTATTTA
*
95499448 ATATTTGATGCAAATT
1 ATATATGATGCAAATT
95499464 ATATATGATGCAAAT
1 ATATATGATGCAAAT
95499479 GAAAATATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (16 bp):
ATATATGATGCAAATT
Found at i:95499488 original size:19 final size:19
Alignment explanation
Indices: 95499464--95499507 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
95499454 GATGCAAATT
95499464 ATATATGATGCAAATG-AAA
1 ATATATG-TGCAAATGAAAA
* *
95499483 ATATATGTGTATATGAAAA
1 ATATATGTGCAAATGAAAA
95499502 ATATAT
1 ATATAT
95499508 TCGGCCAACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.50, C:0.02, G:0.14, T:0.34
Consensus pattern (19 bp):
ATATATGTGCAAATGAAAA
Found at i:95501220 original size:27 final size:27
Alignment explanation
Indices: 95501189--95501365 Score: 140
Period size: 27 Copynumber: 6.5 Consensus size: 27
95501179 ATATTGAGCC
* * * *
95501189 CGCACACTCAGTGCTATGTAATCAACT
1 CGCACACTTAGTGCCACGTAATCAAAT
95501216 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACGTAATCAAAT
* * **
95501243 CGCACACTTAGTGCCACATAGTCCATTT
1 CGCACACTTAGTGCCACGTAAT-CAAAT
* * ** *
95501271 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACGTAATCAAAT
* * **
95501298 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CGTAATCAAAT
* * * *
95501325 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCCACGTAATCAAAT
95501352 CGCACACTTAGTGC
1 CGCACACTTAGTGC
95501366 TGTACAATTT
Statistics
Matches: 127, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 24 0.19
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCCACGTAATCAAAT
Found at i:95501282 original size:55 final size:55
Alignment explanation
Indices: 95501215--95501365 Score: 207
Period size: 54 Copynumber: 2.8 Consensus size: 55
95501205 TGTAATCAAC
* *
95501215 TCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCCA-CATAGTCCATT
1 TCGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGCCATCATA-TCCATT
* * * *
95501270 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTG-CATCATATTCATT
1 TCGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGCCATCATATCCATT
* *
95501324 TCGCACACTTAGTGCAACATAGTCGAATCGCACACTTAGTGC
1 TCGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGC
95501366 TGTACAATTT
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
54 43 0.52
55 40 0.48
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (55 bp):
TCGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGCCATCATATCCATT
Found at i:95501328 original size:82 final size:81
Alignment explanation
Indices: 95501210--95501365 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
95501200 TGCTATGTAA
* * *
95501210 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCCACATAGTCCATTTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCCA-ATCGCA
95501275 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
95501292 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCCAATCGCA
95501356 CACTTAGTGC
65 CACTTAGTGC
95501366 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.74
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCCAATCGCAC
ACTTAGTGCCGCATGG
Found at i:95509200 original size:27 final size:27
Alignment explanation
Indices: 95509170--95509346 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
95509160 ATATCGAGTC
* *
95509170 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
95509197 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
95509224 TGCACACTTAGTGCCACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
95509251 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
95509278 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
95509305 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
95509332 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
95509347 GTACAATTTA
Statistics
Matches: 128, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 126 0.98
28 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:95509310 original size:81 final size:81
Alignment explanation
Indices: 95509191--95509345 Score: 217
Period size: 81 Copynumber: 1.9 Consensus size: 81
95509181 TGCTATATAA
*
95509191 TCAACTCGCACACTTAGTGCTACATAATCAAATTGCACACTTAGTGCCACATAGTC-AACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATTGCACACTTAGTGCAACATAGTCGAA-TCGCA
95509255 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * *
95509272 TCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCGAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATT-GCACACTTAGTGCAACATAGTCGAATCGC
*
95509335 ACCCTTAGTGC
64 ACACTTAGTGC
95509346 TGTACAATTT
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
80 4 0.06
81 60 0.91
82 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATTGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:95511089 original size:41 final size:42
Alignment explanation
Indices: 95511044--95511132 Score: 117
Period size: 41 Copynumber: 2.1 Consensus size: 42
95511034 AAACTACTCA
* * * *
95511044 TAGCTTTAATATGCTTCACTGCAGTTTAGGAGGCTA-ACTTG
1 TAGCTTTAATATGCTTCACTACACTTCAGGAGACTAGACTTG
* *
95511085 TAGCTTTAATCTGCTTTACTACACTTCAGGAGACTAGACTTG
1 TAGCTTTAATATGCTTCACTACACTTCAGGAGACTAGACTTG
95511127 TAGCTT
1 TAGCTT
95511133 CATTACCCAA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
41 30 0.73
42 11 0.27
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (42 bp):
TAGCTTTAATATGCTTCACTACACTTCAGGAGACTAGACTTG
Found at i:95511430 original size:44 final size:45
Alignment explanation
Indices: 95511321--95511945 Score: 385
Period size: 45 Copynumber: 13.9 Consensus size: 45
95511311 CGGAGATCTG
* *
95511321 CTTCAGTCTACTCCACTGCAACTTTAGGGAGATAAGACTTGCTAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTAT
* * * *
95511366 CTTCAGTTTGCTCCATTGCAACTTCAGGAAGATAAGACTTACTA-
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTAT
** **
95511410 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG-TAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTAT
* * ** * * * *
95511454 TTTTACCCTGCTCTACTGCAACTTCAGAGAGATAAGGA-TT-ATGGT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAA-GACTTGCT-AT
* *
95511499 -TTC-GATTTGCTCCACTACAACTTCAGGGAGATAAGA-TCTGCTAT
1 CTTCAG-TCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGCTAT
*
95511543 CTTCAGTATGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTAT
** *
95511588 CTTCAGTCTGCTCCACTGCAACTTCATAGAGAT-AGA-TTTCTGTAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGC--TAT
* * * * * * *
95511633 -TTTA-TCCTGCTCTACTGTAACTTTAGAGAGATAAGGA-TT-ATGGT
1 CTTCAGT-CTGCTCCACTGCAACTTCAGGGAGATAA-GACTTGCT-AT
* * *
95511677 -TTCAATCTTCTCCACTACAACTTCAGGGAGATAAGA-TCTGCTAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGCTAT
** * * *
95511721 CTTCAGTCTATTCTACTACAACTTTAGGGAGATAAGACTTGCTTATTTAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGC-----TAT
* * * * * *
95511771 AGCTTCA-TCTGTTTCACTGCAATTTCAGGGAAATGAGA-TTCTCTAT
1 --CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GCTAT
* * * *
95511817 CTT-TGTCTGCTCCACTACAACTTTAGGGAGATAAGACTT--TAA
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTAT
** * ** **
95511859 CTTCAACCTGCTCCACTGCTACTTCAGGGAGATAAGGTTTAG-TGG
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GCTAT
* * *
95511904 CTTTAATCTAG-TCCACTGCAACTTCAGGGAGATAAGATTTGC
1 CTTCAGTCT-GCTCCACTGCAACTTCAGGGAGATAAGACTTGC
95511946 CATTATAACT
Statistics
Matches: 455, Mismatches: 89, Indels: 72
0.74 0.14 0.12
Matches are distributed among these distances:
42 5 0.01
43 41 0.09
44 178 0.39
45 186 0.41
46 11 0.02
50 5 0.01
51 24 0.05
52 5 0.01
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (45 bp):
CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTAT
Found at i:95511692 original size:178 final size:177
Alignment explanation
Indices: 95511322--95511763 Score: 604
Period size: 178 Copynumber: 2.5 Consensus size: 177
95511312 GGAGATCTGC
* * * * * *
95511322 TTCAGTCTACTCCACTGCAACTTTAGGGAGATAAGA-CTTGCTATCTTCAGTTTGCTCCATTGCA
1 TTCAATCTTCTCCACTACAACTTCAGGGAGATAAGATC-TGCTATCTTCAGTATGCTCCACTGCA
* * *
95511386 ACTTCAGGAAGATAAGACTTACTACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG
65 ACTTCAGGGAGATAAGACTTGCTACTTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTG
95511451 TATTTTTACCCTGCTCTACTGCAACTTCAGAGAGATAAGGATTATGGT
130 TATTTTTACCCTGCTCTACTGCAACTTCAGAGAGATAAGGATTATGGT
*
95511499 TTCGAT-TTGCTCCACTACAACTTCAGGGAGATAAGATCTGCTATCTTCAGTATGCTCCACTGCA
1 TTCAATCTT-CTCCACTACAACTTCAGGGAGATAAGATCTGCTATCTTCAGTATGCTCCACTGCA
** * *
95511563 ACTTCAGGGAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCATAGAGAT-AGATTT
65 ACTTCAGGGAGATAAGACTTGCTA-CTTCAACCTGCTCCACTGCAACTTCAGAGAGATAAG-GTT
* * *
95511627 CTGTA-TTTTATCCTGCTCTACTGTAACTTTAGAGAGATAAGGATTATGGT
128 -TGTATTTTTACCCTGCTCTACTGCAACTTCAGAGAGATAAGGATTATGGT
* ** * *
95511677 TTCAATCTTCTCCACTACAACTTCAGGGAGATAAGATCTGCTATCTTCAGTCTATTCTACTACAA
1 TTCAATCTTCTCCACTACAACTTCAGGGAGATAAGATCTGCTATCTTCAGTATGCTCCACTGCAA
*
95511742 CTTTAGGGAGATAAGACTTGCT
66 CTTCAGGGAGATAAGACTTGCT
95511764 TATTTATAGC
Statistics
Matches: 235, Mismatches: 24, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
176 1 0.00
177 77 0.33
178 151 0.64
179 6 0.03
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (177 bp):
TTCAATCTTCTCCACTACAACTTCAGGGAGATAAGATCTGCTATCTTCAGTATGCTCCACTGCAA
CTTCAGGGAGATAAGACTTGCTACTTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTGT
ATTTTTACCCTGCTCTACTGCAACTTCAGAGAGATAAGGATTATGGT
Found at i:95512400 original size:44 final size:43
Alignment explanation
Indices: 95512346--95512461 Score: 157
Period size: 41 Copynumber: 2.7 Consensus size: 43
95512336 TGGTTTCTTC
95512346 CATCCCACTGCAACTCAAGGGTATAAGATTTGTACCATCTTC-AT
1 CATCCCACTGCAACTCAA-GGTAT-AGATTTGTACCATCTTCAAT
* * * *
95512390 CATCCCACTGCAGCTC-AGGTAT-GACTTGTATCTTCTTCAAT
1 CATCCCACTGCAACTCAAGGTATAGATTTGTACCATCTTCAAT
95512431 CATCCCACTGCAACTCAAGGTATAGATTTGT
1 CATCCCACTGCAACTCAAGGTATAGATTTGT
95512462 GTCTTTTCTC
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
40 13 0.21
41 17 0.27
42 11 0.17
43 7 0.11
44 15 0.24
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.31
Consensus pattern (43 bp):
CATCCCACTGCAACTCAAGGTATAGATTTGTACCATCTTCAAT
Found at i:95525375 original size:42 final size:43
Alignment explanation
Indices: 95525271--95525421 Score: 148
Period size: 42 Copynumber: 3.5 Consensus size: 43
95525261 GTACAATGCG
* * *
95525271 ATGTCCCGGACGTGGTCTTACATGTAACTCAG-TATCGATGCCT
1 ATGTCCCAGACATGGTCTTACATGTAAATCAGATA-CGATGCCT
* * *
95525314 CTATCCCAGACA-GGCTCTTAAATG-AAATCAGATACGATGCCT
1 ATGTCCCAGACATGG-TCTTACATGTAAATCAGATACGATGCCT
* * * *
95525356 ATGTCCCAGACATGTTCTTACACGTAAATCTCAAAT-CGAGGCCT
1 ATGTCCCAGACATGGTCTTACATGTAAA--TCAGATACGATGCCT
95525400 ATGTCCCAGACATGGTCTTACA
1 ATGTCCCAGACATGGTCTTACA
95525422 CGATATCTCA
Statistics
Matches: 88, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
42 33 0.38
43 22 0.25
44 28 0.32
45 5 0.06
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGTCCCAGACATGGTCTTACATGTAAATCAGATACGATGCCT
Found at i:95528898 original size:40 final size:40
Alignment explanation
Indices: 95528854--95529074 Score: 213
Period size: 40 Copynumber: 5.6 Consensus size: 40
95528844 GCTCCTCGTT
*
95528854 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
95528894 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * * *
95528934 CAAATG-CTTCAGGACATAACCCAGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGTTATAGTAACTCGCA
* * * *
95528973 CCAATGCCTTCGGG-CTTAGACCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
95529012 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
95529053 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
95529075 TGACATCATT
Statistics
Matches: 150, Mismatches: 21, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
38 3 0.02
39 59 0.39
40 74 0.49
41 14 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:95528965 original size:39 final size:40
Alignment explanation
Indices: 95528854--95529024 Score: 224
Period size: 39 Copynumber: 4.3 Consensus size: 40
95528844 GCTCCTCGTT
*
95528854 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
95528894 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* *
95528934 CAAATG-CTTCAGGACATAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
95528973 CCAATGCCTTCGGG-CTTAGA-CCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATA-ACCCGGATTTAGTAACTCGCA
95529012 CAAATGCCTTCGG
1 CAAATGCCTTCGG
95529025 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 66 0.57
40 48 0.41
41 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:95528965 original size:79 final size:78
Alignment explanation
Indices: 95528854--95529018 Score: 226
Period size: 79 Copynumber: 2.1 Consensus size: 78
95528844 GCTCCTCGTT
* * *
95528854 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA-ACCCG
1 CAAATG-CTTCAGGACATAACCCGATTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGA-CCG
*
95528918 GATTTAGTAACTCGCA
63 GAATTAGTAACTCGCA
*
95528934 CAAATGCTTCAGGACATAACCCAGATT-TAGTAACTCGCACCAATGCCTTCGGGCTTAGACCGGA
1 CAAATGCTTCAGGACATAACCC-GATTATAGTAACTCGCACAAATGCCTTCGGGCTTAGACCGGA
*
95528998 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
95529012 CAAATGC
1 CAAATGC
95529019 CTTCGGATCT
Statistics
Matches: 77, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
78 28 0.36
79 40 0.52
80 9 0.12
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (78 bp):
CAAATGCTTCAGGACATAACCCGATTATAGTAACTCGCACAAATGCCTTCGGGCTTAGACCGGAA
TTAGTAACTCGCA
Found at i:95533829 original size:40 final size:40
Alignment explanation
Indices: 95533785--95534055 Score: 402
Period size: 40 Copynumber: 6.8 Consensus size: 40
95533775 GGGTATAGCT
* *
95533785 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
*
95533825 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
95533865 ACTCGCAGAAATGCCTTCGGGACTTAG-CCAGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* ** *
95533904 ACTCGCTCAAATGCCTTCGAAACTTAGCCCAGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
95533944 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
95533984 ACTCGCACAACTGCCTTCGGGACTTAGCCCGGA-ACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
* *
95534024 ACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
95534056 TTATCATCCA
Statistics
Matches: 210, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 35 0.17
40 175 0.83
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:95533970 original size:119 final size:120
Alignment explanation
Indices: 95533785--95534053 Score: 416
Period size: 119 Copynumber: 2.2 Consensus size: 120
95533775 GGGTATAGCT
* * *
95533785 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATGCCTTCGGGACTT
1 ACTCGCTCAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTT
*
95533850 AGCCCGGATATAGTAACTCGCAGAAATGCCTTCGGGACTTAG-CCAGATA-TAGTA
66 AGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGA-ACTAGTA
**
95533904 ACTCGCTCAAATGCCTTCGAAACTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCTCAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTT
* * *
95533969 AGCCCGGATATAGTAACTCGCACAACTGCCTTCGGGACTTAGCCCGGAACTAGTC
66 AGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAACTAGTA
* *
95534024 ACTAGCGCAAATGCCTTCGGGACTTAGCCC
1 ACTCGCTCAAATGCCTTCGGGACTTAGCCC
95534054 GGTTATCATC
Statistics
Matches: 135, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
119 101 0.75
120 34 0.25
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (120 bp):
ACTCGCTCAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAACTAGTA
Found at i:95534111 original size:18 final size:19
Alignment explanation
Indices: 95534069--95534111 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
95534059 TCATCCAAAT
95534069 ATTCATGCACACATCAATA
1 ATTCATGCACACATCAATA
* *
95534088 AATCATG-ACACATCTATA
1 ATTCATGCACACATCAATA
*
95534106 TTTCAT
1 ATTCAT
95534112 TTTCATAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.33
Consensus pattern (19 bp):
ATTCATGCACACATCAATA
Found at i:95542173 original size:40 final size:40
Alignment explanation
Indices: 95542136--95542325 Score: 240
Period size: 40 Copynumber: 4.8 Consensus size: 40
95542126 GGGTATAGCT
* * *
95542136 ACTCACTCGAATGCCTTCAGGACATAGCCCGGATATAGTA
1 ACTCACACAAATGCCTTCAGGACTTAGCCCGGATATAGTA
* *
95542176 ACTCACACCAATGCCTTCAGGACTTAACCCGGATATAGTA
1 ACTCACACAAATGCCTTCAGGACTTAGCCCGGATATAGTA
* *
95542216 ACTCACACAAATGCCTTCGGGACTTAGCCCAGATATAGTA
1 ACTCACACAAATGCCTTCAGGACTTAGCCCGGATATAGTA
* * *
95542256 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTAGTC
1 ACTCACACAAATGCCTTCAGGACTTAGCCCGGATA-TAGTA
* *
95542296 ACT-AGCGCAAATGCCTTCGGGACTTAGCCC
1 ACTCA-CACAAATGCCTTCAGGACTTAGCCC
95542326 AGTTATCATC
Statistics
Matches: 135, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 134 0.99
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (40 bp):
ACTCACACAAATGCCTTCAGGACTTAGCCCGGATATAGTA
Found at i:95542244 original size:80 final size:79
Alignment explanation
Indices: 95542110--95542327 Score: 262
Period size: 80 Copynumber: 2.7 Consensus size: 79
95542100 AAGCCAAGTA
* * * * * * *
95542110 CCTTCGGGATTTAA-CCGGGTATAGCTACTCACTCGAATGCCTTCAGGACATAGCCCGGATATAG
1 CCTTCGGGACTTAACCCGGATATAG-TACTCACACAAATGCCTTCGGGACTTAGCCCAGATATAG
*
95542174 TAACTCACACCAATG
65 TAACTCACACAAATG
*
95542189 CCTTCAGGACTTAACCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCAGATATAG
1 CCTTCGGGACTTAACCCGGATATAGT-ACTCACACAAATGCCTTCGGGACTTAGCCCAGATATAG
*
95542254 TAACTCGCACAAATG
65 TAACTCACACAAATG
* *
95542269 CCTTCGGGACTTAGCCCGGA-ACTAGTCACT-AGCGCAAATGCCTTCGGGACTTAGCCCAG
1 CCTTCGGGACTTAACCCGGATA-TAGT-ACTCA-CACAAATGCCTTCGGGACTTAGCCCAG
95542328 TTATCATCCA
Statistics
Matches: 121, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
79 15 0.12
80 106 0.88
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (79 bp):
CCTTCGGGACTTAACCCGGATATAGTACTCACACAAATGCCTTCGGGACTTAGCCCAGATATAGT
AACTCACACAAATG
Found at i:95542383 original size:18 final size:19
Alignment explanation
Indices: 95542341--95542383 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
95542331 TCATCCAAAT
95542341 ATTCATGCACACATCAATA
1 ATTCATGCACACATCAATA
* *
95542360 AATCATG-ACACATCTATA
1 ATTCATGCACACATCAATA
*
95542378 TTTCAT
1 ATTCAT
95542384 TTTCATAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.33
Consensus pattern (19 bp):
ATTCATGCACACATCAATA
Found at i:95544709 original size:12 final size:13
Alignment explanation
Indices: 95544677--95544709 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
95544667 CTAGCCACAC
95544677 GCCCGTGTCTCCA
1 GCCCGTGTCTCCA
*
95544690 GGCCGTGTCT-CA
1 GCCCGTGTCTCCA
95544702 GCCCGTGT
1 GCCCGTGT
95544710 GGCCAACACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 9 0.50
13 9 0.50
ACGTcount: A:0.06, C:0.39, G:0.30, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCTCCA
Found at i:95546542 original size:47 final size:49
Alignment explanation
Indices: 95546469--95546600 Score: 155
Period size: 49 Copynumber: 2.7 Consensus size: 49
95546459 GGTATAATGG
* *
95546469 TGATGCCATGTCCCAAACATGCTCTTACACTAGCTCATC-CATCAA-G-
1 TGATGCCATGTCCCAGACATGCTCTTACACTAGCTCATCAAATCAAGGA
* * *
95546515 TCGATGCCATGTCCCAGACATGGTCTTACATTGGCT-ATCGAAATCAAGGA
1 T-GATGCCATGTCCCAGACATGCTCTTACACTAGCTCATC-AAATCAAGGA
* *
95546565 TGACGCCATGTCCCAGACATGTTCTTACACTAGCTC
1 TGATGCCATGTCCCAGACATGCTCTTACACTAGCTC
95546601 TCACATATCT
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
46 4 0.06
47 30 0.42
48 5 0.07
49 31 0.44
50 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (49 bp):
TGATGCCATGTCCCAGACATGCTCTTACACTAGCTCATCAAATCAAGGA
Found at i:95546717 original size:46 final size:47
Alignment explanation
Indices: 95546659--95546786 Score: 170
Period size: 47 Copynumber: 2.7 Consensus size: 47
95546649 ATATCTCGTA
**
95546659 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-TCTCATCTTAAT-
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCATCTCATAAT-ATG
* * * *
95546705 GCCGATGCATGTCCCAGATATGTCTTACACTGGCATTTCATAATGTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCATCTCATAATATG
*
95546752 GCCGATGCATGTCCCAAACATGTCTTACACTAGCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCA
95546787 CACACATATC
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
46 33 0.46
47 38 0.54
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCATCTCATAATATG
Found at i:95551611 original size:16 final size:16
Alignment explanation
Indices: 95551592--95551628 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
95551582 TCTTATTTAA
95551592 TTTTTAAGACTCATTT
1 TTTTTAAGACTCATTT
*
95551608 TTTTTAAGATTCATTT
1 TTTTTAAGACTCATTT
*
95551624 GTTTT
1 TTTTT
95551629 CCTTTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.08, G:0.08, T:0.62
Consensus pattern (16 bp):
TTTTTAAGACTCATTT
Found at i:95553338 original size:13 final size:13
Alignment explanation
Indices: 95553320--95553346 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
95553310 GAAGTAATCG
95553320 CACACAGGCGTGT
1 CACACAGGCGTGT
95553333 CACACAGGCGTGT
1 CACACAGGCGTGT
95553346 C
1 C
95553347 CCTGCCGATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACAGGCGTGT
Found at i:95554038 original size:32 final size:33
Alignment explanation
Indices: 95553992--95554059 Score: 129
Period size: 32 Copynumber: 2.1 Consensus size: 33
95553982 TAGTGATAAT
95553992 AACATAACTTAGGGATCTCTACGGAACAAGTTG
1 AACATAACTTAGGGATCTCTACGGAACAAGTTG
95554025 AACA-AACTTAGGGATCTCTACGGAACAAGTTG
1 AACATAACTTAGGGATCTCTACGGAACAAGTTG
95554057 AAC
1 AAC
95554060 GAATAAATAG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 31 0.89
33 4 0.11
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (33 bp):
AACATAACTTAGGGATCTCTACGGAACAAGTTG
Found at i:95577394 original size:23 final size:23
Alignment explanation
Indices: 95577345--95577394 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
95577335 ATATCGTAAT
* * * *
95577345 GAAGCTACTGACAGCCGTGCAAT
1 GAAGCTACTAACAGCAGCGCAAC
*
95577368 GAAGCTACTAACAGCAGCGCAGC
1 GAAGCTACTAACAGCAGCGCAAC
95577391 GAAG
1 GAAG
95577395 TTGCTAATAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.34, C:0.26, G:0.28, T:0.12
Consensus pattern (23 bp):
GAAGCTACTAACAGCAGCGCAAC
Found at i:95579677 original size:13 final size:13
Alignment explanation
Indices: 95579659--95579684 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
95579649 TCGAGGCATT
95579659 ACACACACGGCCA
1 ACACACACGGCCA
95579672 ACACACACGGCCA
1 ACACACACGGCCA
95579685 TGTGGCTAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.46, G:0.15, T:0.00
Consensus pattern (13 bp):
ACACACACGGCCA
Found at i:95588828 original size:24 final size:24
Alignment explanation
Indices: 95588796--95588897 Score: 141
Period size: 24 Copynumber: 4.1 Consensus size: 24
95588786 ACGGCATTGT
** *
95588796 TCTAAGTGAAATAAAACCATGACA
1 TCTAAGTGAAATAAGTCCATGGCA
95588820 TCTAAGTGAAATAAGTCCATGGCAA
1 TCTAAGTGAAATAAGTCCATGGC-A
95588845 TGTGCTAAGTGAAATAAGTCCATGGCA
1 --T-CTAAGTGAAATAAGTCCATGGCA
95588872 TCTAAGTGAAATAAGTCCATGGCA
1 TCTAAGTGAAATAAGTCCATGGCA
95588896 TC
1 TC
95588898 GTGCTAAATG
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
24 45 0.63
25 2 0.03
27 2 0.03
28 22 0.31
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.25
Consensus pattern (24 bp):
TCTAAGTGAAATAAGTCCATGGCA
Found at i:95588861 original size:28 final size:27
Alignment explanation
Indices: 95588788--95588904 Score: 129
Period size: 24 Copynumber: 4.4 Consensus size: 27
95588778 TTTAGGATAC
* **
95588788 GGCATTGTTCTAAGTGAAATAAAACCAT
1 GGCA-TGTGCTAAGTGAAATAAGTCCAT
*
95588816 GACA--T-CTAAGTGAAATAAGTCCAT
1 GGCATGTGCTAAGTGAAATAAGTCCAT
95588840 GGCAATGTGCTAAGTGAAATAAGTCCAT
1 GGC-ATGTGCTAAGTGAAATAAGTCCAT
95588868 GGCA--T-CTAAGTGAAATAAGTCCAT
1 GGCATGTGCTAAGTGAAATAAGTCCAT
95588892 GGCATCGTGCTAA
1 GGCAT-GTGCTAA
95588905 ATGAGAAATT
Statistics
Matches: 77, Mismatches: 4, Indels: 16
0.79 0.04 0.16
Matches are distributed among these distances:
24 42 0.55
25 3 0.04
27 3 0.04
28 29 0.38
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (27 bp):
GGCATGTGCTAAGTGAAATAAGTCCAT
Found at i:95588861 original size:52 final size:52
Alignment explanation
Indices: 95588788--95588904 Score: 173
Period size: 52 Copynumber: 2.2 Consensus size: 52
95588778 TTTAGGATAC
* *
95588788 GGCATTGTTCTAAGTGAAATAAAACCATGACATCTAAGTGAAATAAGTCCAT
1 GGCAATGTGCTAAGTGAAATAAAACCATGACATCTAAGTGAAATAAGTCCAT
** *
95588840 GGCAATGTGCTAAGTGAAATAAGTCCATGGCATCTAAGTGAAATAAGTCCAT
1 GGCAATGTGCTAAGTGAAATAAAACCATGACATCTAAGTGAAATAAGTCCAT
95588892 GGC-ATCGTGCTAA
1 GGCAAT-GTGCTAA
95588905 ATGAGAAATT
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
51 2 0.03
52 57 0.97
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (52 bp):
GGCAATGTGCTAAGTGAAATAAAACCATGACATCTAAGTGAAATAAGTCCAT
Found at i:95589008 original size:51 final size:51
Alignment explanation
Indices: 95588932--95589181 Score: 358
Period size: 51 Copynumber: 4.9 Consensus size: 51
95588922 TGAACCTTAG
** * * * *
95588932 GAATAAAATAAATTTAGACACAAGTGTAGTACTATGTGAAGGCCATTTTAT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
**
95588983 GAATATTATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
95589034 GAATATAATAGTTTTGGACACAAGTGTGGTACTATGTGAAAGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
95589085 GAATAAAATAGCTTTGAACACAAGTGTGGTACTATGTTAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
95589136 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
95589182 CGTGTATCCG
Statistics
Matches: 179, Mismatches: 19, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
50 1 0.01
51 178 0.99
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:95595040 original size:26 final size:27
Alignment explanation
Indices: 95595011--95595070 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
95595001 ATGGGCCTAA
*
95595011 AAAATTGCCCA-AGCCCGGCCCGAAAT
1 AAAATTGCCAAGAGCCCGGCCCGAAAT
**
95595037 AAAATTGTTAAGAGCCCGGCCCGAAAT
1 AAAATTGCCAAGAGCCCGGCCCGAAAT
95595064 AAAATTG
1 AAAATTG
95595071 TTAAGCCTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.17
Consensus pattern (27 bp):
AAAATTGCCAAGAGCCCGGCCCGAAAT
Found at i:95595090 original size:31 final size:27
Alignment explanation
Indices: 95595022--95595075 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
95595012 AAATTGCCCA
95595022 AGCCCGGCCCGAAATAAAATTGTTAAG
1 AGCCCGGCCCGAAATAAAATTGTTAAG
95595049 AGCCCGGCCCGAAATAAAATTGTTAAG
1 AGCCCGGCCCGAAATAAAATTGTTAAG
95595076 CCTGAGCCCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (27 bp):
AGCCCGGCCCGAAATAAAATTGTTAAG
Found at i:95595212 original size:40 final size:40
Alignment explanation
Indices: 95595168--95595248 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
95595158 TCAAATACAT
95595168 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
* * * * **
95595208 TTAAAACAATTCTTAAAACAATACACAAATTGAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
95595248 T
1 T
95595249 AATAAAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.63, C:0.10, G:0.02, T:0.25
Consensus pattern (40 bp):
TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
Found at i:95595257 original size:20 final size:19
Alignment explanation
Indices: 95595234--95595308 Score: 57
Period size: 20 Copynumber: 3.9 Consensus size: 19
95595224 AACAATACAC
95595234 AAATTGAAAATATATAATAA
1 AAATTGAAAATATA-AATAA
** *
95595254 AAATTGATTATATTAAAATTA
1 AAATTGAAAATA-T-AAATAA
95595275 AAATT-AAAATATAAAT-A
1 AAATTGAAAATATAAATAA
* *
95595292 TAATTAAAAATA-AAATA
1 AAATTGAAAATATAAATA
95595309 TATATATTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
17 9 0.20
18 10 0.22
19 1 0.02
20 14 0.31
21 10 0.22
22 1 0.02
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
AAATTGAAAATATAAATAA
Found at i:95595296 original size:17 final size:17
Alignment explanation
Indices: 95595276--95595310 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
95595266 TTAAAATTAA
95595276 AATT-AAAATATAAATAT
1 AATTAAAAATA-AAATAT
95595293 AATTAAAAATAAAATAT
1 AATTAAAAATAAAATAT
95595310 A
1 A
95595311 TATATTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
AATTAAAAATAAAATAT
Found at i:95595299 original size:23 final size:23
Alignment explanation
Indices: 95595270--95595315 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
95595260 ATTATATTAA
*
95595270 AATTAAAATTAAAATATAAATAT
1 AATTAAAAATAAAATATAAATAT
*
95595293 AATTAAAAATAAAATATATATAT
1 AATTAAAAATAAAATATAAATAT
95595316 TTATTATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (23 bp):
AATTAAAAATAAAATATAAATAT
Found at i:95595902 original size:10 final size:11
Alignment explanation
Indices: 95595881--95595912 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
95595871 GAGAAGCAAG
*
95595881 AAAAATGAAAA
1 AAAAAAGAAAA
95595892 AAAAAAGAAAA
1 AAAAAAGAAAA
95595903 AAAAAAGAAA
1 AAAAAAGAAA
95595913 GAGAGCTTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.03
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:95598438 original size:27 final size:28
Alignment explanation
Indices: 95598390--95598444 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
95598380 ATATATAGTT
95598390 TTTAAAATTTATAAATAAAT-AAATAAA
1 TTTAAAATTTATAAATAAATAAAATAAA
*
95598417 TTTAAAATTTAT-ATTAATATAAAATAAA
1 TTTAAAATTTATAAATAA-ATAAAATAAA
95598445 GTAAAATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 4 0.16
27 14 0.56
28 7 0.28
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (28 bp):
TTTAAAATTTATAAATAAATAAAATAAA
Found at i:95598449 original size:27 final size:27
Alignment explanation
Indices: 95598392--95598451 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
95598382 ATATAGTTTT
*
95598392 TAAAATTTATAAATAAATAAATAAATT
1 TAAAATTTATAAATAAATAAATAAATG
*
95598419 TAAAATTTAT-ATTAATATAAAATAAA-G
1 TAAAATTTATAAATAA-AT-AAATAAATG
95598446 TAAAAT
1 TAAAAT
95598452 AAAATCTCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 4 0.14
27 18 0.62
28 7 0.24
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (27 bp):
TAAAATTTATAAATAAATAAATAAATG
Found at i:95598812 original size:20 final size:20
Alignment explanation
Indices: 95598787--95598828 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
95598777 TCAACGGTAA
95598787 TATTTACTTTTGTCTGATGT
1 TATTTACTTTTGTCTGATGT
95598807 TATTTACTTTTGTCTGATGT
1 TATTTACTTTTGTCTGATGT
95598827 TA
1 TA
95598829 CGGCAGTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.17, C:0.10, G:0.14, T:0.60
Consensus pattern (20 bp):
TATTTACTTTTGTCTGATGT
Found at i:95602232 original size:45 final size:45
Alignment explanation
Indices: 95602180--95602266 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
95602170 TATGTAATCT
*
95602180 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACATCC
*
95602225 GAACTCATTGAGTTGTGGTCTAAGTTCGTGATATATGTGACA
1 GAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACA
95602267 CGTGTTTTGG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACATCC
Found at i:95604759 original size:46 final size:48
Alignment explanation
Indices: 95604708--95604838 Score: 157
Period size: 46 Copynumber: 2.8 Consensus size: 48
95604698 ATGGTTGAGC
95604708 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACTAG
* * * *
95604755 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTA-G
95604800 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
95604839 GCGGGTTACA
Statistics
Matches: 69, Mismatches: 7, Indels: 13
0.78 0.08 0.15
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
45 3 0.04
46 29 0.42
47 29 0.42
48 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTAG
Found at i:95613237 original size:29 final size:29
Alignment explanation
Indices: 95613174--95613241 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
95613164 TAATCAACCA
95613174 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
95613203 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
95613232 CGCACACTTA
1 CGCACACTTA
95613242 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:95613353 original size:173 final size:173
Alignment explanation
Indices: 95613064--95613563 Score: 901
Period size: 173 Copynumber: 2.9 Consensus size: 173
95613054 AACTCAAGGT
* *
95613064 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCACACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
95613129 GAAATTATATATTGGGTTGCACACATAATGTTTAGTAATCAACCACGCACACTTAGTGCCATGCA
66 GAAATTATATATTGGGTTGCACACATAATGTTTAGTAATCAACCACGCACACTTAGTGCCATGCA
95613194 CTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 CTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
95613237 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
95613302 GAAATTATATATTGGGTTGCACACATAATGTTTAGTAATCAACCACGCACACTTAGTGCCATGCA
66 GAAATTATATATTGGGTTGCACACATAATGTTTAGTAATCAACCACGCACACTTAGTGCCATGCA
95613367 CTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 CTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
95613410 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
* * * * * *
95613475 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAATTATATATTGGGTT-GCACACATAATGTTTAGTAATCAACCACGCACACTTAGTGCCATGC
*
95613540 ACTTTAAACTCGCACACTTAGTGC
130 ACTTTAAACTCACACACTTAGTGC
95613564 TGTACAATTT
Statistics
Matches: 316, Mismatches: 10, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
173 252 0.80
174 64 0.20
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (173 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
GAAATTATATATTGGGTTGCACACATAATGTTTAGTAATCAACCACGCACACTTAGTGCCATGCA
CTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:95613410 original size:29 final size:29
Alignment explanation
Indices: 95613347--95613414 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
95613337 TAATCAACCA
95613347 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
95613376 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
95613405 CGCACACTTA
1 CGCACACTTA
95613415 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:95613555 original size:29 final size:30
Alignment explanation
Indices: 95613516--95613594 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
95613506 CTTAATAATC
95613516 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
95613546 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
95613575 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
95613595 ATCCCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:95616375 original size:46 final size:45
Alignment explanation
Indices: 95616288--95616504 Score: 197
Period size: 46 Copynumber: 4.6 Consensus size: 45
95616278 GGTAAGGTGT
*
95616288 CGATGCCATGTCCCAGACATAGTCTTACACTGAC-TATCATCTCATAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTCA-AGC
* * *
95616336 CGACGCATGTCCTAGACATGTCTTACACTGGCTTACATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTC-AAGC
* * * * *
95616382 CGATGCATGTCCCAAACATGTCTTACACTAGCACT-CGTCTCAATGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TTACATCTCAA-GC
* * **
95616428 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAAT-GTGCC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACAT-CTCAAG-C
95616476 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
95616505 AGCTCACACA
Statistics
Matches: 140, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
45 1 0.01
46 69 0.49
47 46 0.33
48 23 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGC
Found at i:95616524 original size:46 final size:45
Alignment explanation
Indices: 95616335--95616525 Score: 152
Period size: 46 Copynumber: 4.1 Consensus size: 45
95616325 CATCTCATAG
* * * * ** * *
95616335 CCGACGCATGTCCTAGACATGTCTTACACTGGCTTACATCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACA-CAAGTGC
* * *
95616381 CCGATGCATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAA-TG-
1 CCGATGCATGTCCCAGACATGTCTTACACTAG--CTC-ACACAAGTGC
* * ** *
95616427 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAATGTGC
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACACAA-GTGC
95616475 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACACAAGTGAC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACACAAGTG-C
95616521 CCGAT
1 CCGAT
95616526 CGTCATGGCA
Statistics
Matches: 115, Mismatches: 21, Indels: 18
0.75 0.14 0.12
Matches are distributed among these distances:
45 7 0.06
46 58 0.50
47 30 0.26
48 19 0.17
49 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACACAAGTGC
Found at i:95617872 original size:43 final size:42
Alignment explanation
Indices: 95617822--95617945 Score: 142
Period size: 43 Copynumber: 2.9 Consensus size: 42
95617812 TCACATGTAT
*
95617822 CACATCCATTATGAACTCGGACCACTCAACGAGCTCGGATGC
1 CACATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGC
* * *
95617864 TCGCATCCATAATGAACTCGGACCACTCAACAAGCTCGAATGC
1 -CACATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGC
** * * *
95617907 CACATATATCACGAAC-CAGGACCACTCAACGAGTTCGGA
1 CACATCCATAATGAACTC-GGACCACTCAACGAGCTCGGA
95617946 CTTCTTAATT
Statistics
Matches: 68, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 1 0.01
42 29 0.43
43 38 0.56
ACGTcount: A:0.32, C:0.32, G:0.18, T:0.18
Consensus pattern (42 bp):
CACATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGC
Found at i:95618262 original size:43 final size:43
Alignment explanation
Indices: 95618201--95618286 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
95618191 CACTTACCTC
*
95618201 GGTACAAAAATTATGGTAATCAAACCTAATCGTCGTATACTTT
1 GGTACAAAAATGATGGTAATCAAACCTAATCGTCGTATACTTT
95618244 GGTACAAAAATGATGGTAATCAAACCTAATCGTCGTATACTTT
1 GGTACAAAAATGATGGTAATCAAACCTAATCGTCGTATACTTT
95618287 ATTCTTCCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.31
Consensus pattern (43 bp):
GGTACAAAAATGATGGTAATCAAACCTAATCGTCGTATACTTT
Found at i:95627164 original size:43 final size:43
Alignment explanation
Indices: 95627116--95627201 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
95627106 ATCACGTGTA
** *
95627116 TCGCATCCATTATGAACTCAGACCACTCAACGAGCTTGGATGC
1 TCGCATCCAGAATGAACTCAGACCACTCAAAGAGCTTGGATGC
*
95627159 TCGCATCCAGAATGAACTCGGACCACTCAAAGAGCTTGGATGC
1 TCGCATCCAGAATGAACTCAGACCACTCAAAGAGCTTGGATGC
95627202 CACATATAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (43 bp):
TCGCATCCAGAATGAACTCAGACCACTCAAAGAGCTTGGATGC
Found at i:95635871 original size:40 final size:40
Alignment explanation
Indices: 95635751--95636008 Score: 211
Period size: 40 Copynumber: 6.5 Consensus size: 40
95635741 TTGAATGCTG
* * * * *
95635751 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-CTAAA
* * * * *
95635791 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGCTAAA
*
95635831 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGCTAAA
* * * *
95635871 TTCGGGTTAAGTCCCGAAGGCATTCATGCGAATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGCTAAA
* * *
95635911 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGCTAAA
* * * ** ** *
95635950 TCCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGCTAAA
*
95635990 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
95636009 TACGTGATTT
Statistics
Matches: 180, Mismatches: 33, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
39 47 0.26
40 124 0.69
41 9 0.05
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGCTAAA
Found at i:95635993 original size:79 final size:79
Alignment explanation
Indices: 95635826--95636008 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 79
95635816 GTGCGAGATA
** * *
95635826 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATTCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
**
95635891 CATTCATGCGAATTG
66 CATT-ATGCGAAGAG
* * * *
95635906 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
*
95635970 CATT-TGAACGAGGAG
66 CATTATG--CGAAGAG
* *
95635985 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
95636009 TACGTGATTT
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
77 2 0.02
78 14 0.16
79 43 0.50
80 27 0.31
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTATGCGAAGAG
Found at i:95643738 original size:40 final size:40
Alignment explanation
Indices: 95643655--95643877 Score: 213
Period size: 40 Copynumber: 5.6 Consensus size: 40
95643645 TTGAATGCTG
* * * * *
95643655 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* * *
95643695 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
* **
95643735 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
**
95643775 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-ATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-TACTAAA
* * *
95643815 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* *
95643854 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
95643878 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 34 0.21
40 114 0.72
41 10 0.06
42 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:95643792 original size:80 final size:79
Alignment explanation
Indices: 95643655--95643879 Score: 242
Period size: 80 Copynumber: 2.8 Consensus size: 79
95643645 TTGAATGCTG
* * * * * *
95643655 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTG-ATAAATCCGGGTTAAG-TCCCGAAGGCAT
95643718 TTGTGCGAGA-TACTAAA
63 TTGTGCGA-ATTACTAAA
* *
95643735 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTT
**
95643800 GTGCGAATTGTTAAA
65 GTGCGAATTACTAAA
* * * *
95643815 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTT-ACTAAATCCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGA-TAAATCCGGGTTAAGTCCCGAAGGCATTT
95643879 G
65 G
95643880 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
79 37 0.30
80 81 0.65
81 6 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAATTACTAAA
Found at i:95643897 original size:79 final size:80
Alignment explanation
Indices: 95643730--95643912 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
95643720 GTGCGAGATA
** *
95643730 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
95643795 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * * *
95643810 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
* *
95643874 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
95643889 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
95643913 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:95643897 original size:119 final size:120
Alignment explanation
Indices: 95643655--95643912 Score: 281
Period size: 119 Copynumber: 2.2 Consensus size: 120
95643645 TTGAATGCTG
* * * * *
95643655 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
* ** ** *
95643720 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
* * * *
95643775 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTG-TTAAATCCGGGTTATG-TCCCGAAGG-CA
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCGAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCCA
* * * * *
95643837 TTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
64 TTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
*
95643894 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
95643913 TACGTGATTT
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
118 15 0.13
119 51 0.44
120 39 0.34
121 10 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
Found at i:95645632 original size:45 final size:45
Alignment explanation
Indices: 95645572--95645658 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
95645562 TATGTAATCT
95645572 GAACTCATTGAGTTATGGTCTAAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTATGGTCTAAGTTCATGATATATGTGACATCC
* * * *
95645617 GAACTCCTTGGGTTATGGTCTGAGTTCGTGATATATGTGACA
1 GAACTCATTGAGTTATGGTCTAAGTTCATGATATATGTGACA
95645659 CTTGTTTTGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (45 bp):
GAACTCATTGAGTTATGGTCTAAGTTCATGATATATGTGACATCC
Found at i:95649703 original size:21 final size:20
Alignment explanation
Indices: 95649679--95649727 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
95649669 TCATGCATAT
*
95649679 ACATTCAACCTATTTAAGCA
1 ACATTCAACCTACTTAAGCA
* *
95649699 CACATTCGACGTACTTAAGCA
1 -ACATTCAACCTACTTAAGCA
*
95649720 TCATTCAA
1 ACATTCAA
95649728 ACTTGCATCA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.29
Consensus pattern (20 bp):
ACATTCAACCTACTTAAGCA
Found at i:95650267 original size:40 final size:40
Alignment explanation
Indices: 95650223--95650446 Score: 192
Period size: 40 Copynumber: 5.6 Consensus size: 40
95650213 ACTAGAGTTT
* * *
95650223 AAACA-AGGCCGTGAAAGTGAATTCAGGGGTACTGAAGTAG
1 AAACAGAGGCCGTG-ATGTGCATTCAGGGGTACTGAAGTAC
* * * * * *
95650263 AAACAG-GGGCATGTATGTGCATTTAAGGGTACTAAAGTAG
1 AAACAGAGGCCGTG-ATGTGCATTCAGGGGTACTGAAGTAC
* *
95650303 AAACAGAGGCACGT-ATGTGCATCCAGGGGTACTGAAGTAT
1 AAACAGAGGC-CGTGATGTGCATTCAGGGGTACTGAAGTAC
* * *
95650343 AAACA-AGGGCATGTATGTGCATTCAGGGGTACCGAA-TAC
1 AAACAGAGGCCGTG-ATGTGCATTCAGGGGTACTGAAGTAC
* *
95650382 AAACAGAGGCACGT-ATGTGCATTCAAGGGTACTAAAGTAC
1 AAACAGAGGC-CGTGATGTGCATTCAGGGGTACTGAAGTAC
*
95650422 AAACAGAGG-CATGTATGTGCATTCA
1 AAACAGAGGCCGTG-ATGTGCATTCA
95650447 TACAATAATT
Statistics
Matches: 148, Mismatches: 26, Indels: 20
0.76 0.13 0.10
Matches are distributed among these distances:
38 4 0.03
39 29 0.20
40 109 0.74
41 4 0.03
42 2 0.01
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (40 bp):
AAACAGAGGCCGTGATGTGCATTCAGGGGTACTGAAGTAC
Found at i:95650426 original size:79 final size:80
Alignment explanation
Indices: 95650243--95650446 Score: 286
Period size: 79 Copynumber: 2.6 Consensus size: 80
95650233 GTGAAAGTGA
* * * * *
95650243 ATTCAGGGGTACTGAAGTAGAAACAGGGGCATGTATGTGCATTTAAGGGTACTAAAGTAGAAACA
1 ATTCAGGGGTACTGAAGTACAAACAAGGGCATGTATGTGCATTCAAGGGTACCAAAGTACAAACA
95650308 GAGGCACGTATGTGC
66 GAGGCACGTATGTGC
* * * *
95650323 ATCCAGGGGTACTGAAGTATAAACAAGGGCATGTATGTGCATTCAGGGGTACCGAA-TACAAACA
1 ATTCAGGGGTACTGAAGTACAAACAAGGGCATGTATGTGCATTCAAGGGTACCAAAGTACAAACA
95650387 GAGGCACGTATGTGC
66 GAGGCACGTATGTGC
* *
95650402 ATTCAAGGGTACTAAAGTACAAAC-AGAGGCATGTATGTGCATTCA
1 ATTCAGGGGTACTGAAGTACAAACAAG-GGCATGTATGTGCATTCA
95650447 TACAATAATT
Statistics
Matches: 111, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
78 2 0.02
79 60 0.54
80 49 0.44
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.22
Consensus pattern (80 bp):
ATTCAGGGGTACTGAAGTACAAACAAGGGCATGTATGTGCATTCAAGGGTACCAAAGTACAAACA
GAGGCACGTATGTGC
Found at i:95657792 original size:14 final size:15
Alignment explanation
Indices: 95657768--95657800 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
95657758 GTTATGGTTA
95657768 TATGAAAAGGCACAC
1 TATGAAAAGGCACAC
95657783 TATG-AAAGGCACAC
1 TATGAAAAGGCACAC
95657797 TATG
1 TATG
95657801 TGTGAGCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.42, C:0.18, G:0.21, T:0.18
Consensus pattern (15 bp):
TATGAAAAGGCACAC
Found at i:95659498 original size:25 final size:25
Alignment explanation
Indices: 95659469--95659565 Score: 122
Period size: 25 Copynumber: 3.9 Consensus size: 25
95659459 TTATTGATTC
* *
95659469 CAGCTCGTATGAGCTTACCATTACT
1 CAGCTCGGATGAGCTTACCATTATT
* * *
95659494 CAGCTCGCATGAGCTTCCCGTTATT
1 CAGCTCGGATGAGCTTACCATTATT
*
95659519 CAGCTCGGATGAGCTTACCTTTATT
1 CAGCTCGGATGAGCTTACCATTATT
* *
95659544 CAGCTCGGAGGAGATTACCATT
1 CAGCTCGGATGAGCTTACCATT
95659566 TACAACTCGT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 62 1.00
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.31
Consensus pattern (25 bp):
CAGCTCGGATGAGCTTACCATTATT
Found at i:95659586 original size:24 final size:25
Alignment explanation
Indices: 95659559--95659619 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
95659549 CGGAGGAGAT
95659559 TACCATTTACAA-CTCGTAA-GAGCA
1 TACCATTTACAAGCTC-TAATGAGCA
95659583 TACCGATTTA-AAGCTCTAATGAGCA
1 TACC-ATTTACAAGCTCTAATGAGCA
*
95659608 TA-CATGTACAAG
1 TACCATTTACAAG
95659620 AATTGACAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
23 4 0.12
24 13 0.41
25 15 0.47
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (25 bp):
TACCATTTACAAGCTCTAATGAGCA
Found at i:95673402 original size:93 final size:93
Alignment explanation
Indices: 95673290--95673461 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
95673280 CGCCCCTAAG
* * *
95673290 TGAATTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95673355 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* *
95673383 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95673448 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
95673462 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:95673458 original size:46 final size:46
Alignment explanation
Indices: 95673286--95673458 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
95673276 AACCCGCCCC
* * * * *
95673286 TAAGTGAATTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
95673332 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
*
95673380 TCA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
95673425 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
95673459 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 61 0.57
47 30 0.28
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:95673917 original size:30 final size:30
Alignment explanation
Indices: 95673883--95673942 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
95673873 ATTTAATACG
95673883 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
95673913 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
95673943 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:95680980 original size:46 final size:46
Alignment explanation
Indices: 95680860--95680981 Score: 199
Period size: 46 Copynumber: 2.7 Consensus size: 46
95680850 AACCCGCCCC
* * * *
95680860 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
95680906 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
95680952 TAAGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
95680982 TGGATGCTCA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:95681445 original size:30 final size:30
Alignment explanation
Indices: 95681411--95681470 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
95681401 ATTTAATACG
95681411 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
95681441 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
95681471 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:95682527 original size:6 final size:6
Alignment explanation
Indices: 95682518--95682542 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
95682508 AGAAATGAAC
95682518 TGAAAA TGAAAA TGAAAA TGAAAA T
1 TGAAAA TGAAAA TGAAAA TGAAAA T
95682543 TTACAATCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.16, T:0.20
Consensus pattern (6 bp):
TGAAAA
Found at i:95684144 original size:46 final size:46
Alignment explanation
Indices: 95684090--95684265 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
95684080 TGTTTGGGCA
* *
95684090 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *** * ** ** *
95684136 TCCAAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGTAAACG
* *
95684183 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
*
95684229 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
95684266 GTGGGTTACA
Statistics
Matches: 104, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
45 2 0.02
46 69 0.66
47 33 0.32
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:95684245 original size:93 final size:93
Alignment explanation
Indices: 95684086--95684257 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
95684076 AGGATGTTTG
*
95684086 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCAAACTCGTTGAG
95684151 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* ** * *
95684179 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-AAACTCGTTGA
95684243 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
95684258 ACTTATGGGT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCAAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:95696180 original size:19 final size:19
Alignment explanation
Indices: 95696149--95696186 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
95696139 TACATACAAT
*
95696149 TGTACAAAATTAAATTTTA
1 TGTACAAAATTAAAATTTA
95696168 TGTA-AAAATTTAAAATTTA
1 TGTACAAAA-TTAAAATTTA
95696187 CCATATTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (19 bp):
TGTACAAAATTAAAATTTA
Found at i:95698131 original size:67 final size:67
Alignment explanation
Indices: 95698023--95698157 Score: 270
Period size: 67 Copynumber: 2.0 Consensus size: 67
95698013 TGCACCATTG
95698023 AGGTAAAGAACCAAATTCAATTGGTGGTGTTGATTTCTTTTGCCAATTGAAAAAAAAAACAAAAA
1 AGGTAAAGAACCAAATTCAATTGGTGGTGTTGATTTCTTTTGCCAATTGAAAAAAAAAACAAAAA
95698088 CA
66 CA
95698090 AGGTAAAGAACCAAATTCAATTGGTGGTGTTGATTTCTTTTGCCAATTGAAAAAAAAAACAAAAA
1 AGGTAAAGAACCAAATTCAATTGGTGGTGTTGATTTCTTTTGCCAATTGAAAAAAAAAACAAAAA
95698155 CA
66 CA
95698157 A
1 A
95698158 AGAACCACCA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.45, C:0.12, G:0.16, T:0.27
Consensus pattern (67 bp):
AGGTAAAGAACCAAATTCAATTGGTGGTGTTGATTTCTTTTGCCAATTGAAAAAAAAAACAAAAA
CA
Found at i:95703255 original size:37 final size:35
Alignment explanation
Indices: 95703214--95703383 Score: 100
Period size: 37 Copynumber: 4.7 Consensus size: 35
95703204 TAGTATCATA
*
95703214 TATTATGATTTTAGTAAATTCATATAAGAATATTGAT
1 TATTATGATTTTAGTAAATT-ATATAA-AATATTAAT
* * *
95703251 TATTAAGAATTTTATTAAATTATAT---ATTTTAAT
1 TATTATG-ATTTTAGTAAATTATATAAAATATTAAT
* * * *
95703284 TATAAT-ATATTTAATAATAATTATGTTAAATTATCT-A-
1 TATTATGAT-TTTAGT-A-AATTAT-ATAAAATAT-TAAT
*
95703321 TATTATGATTTGAGTAAATTCATATAAGAATATTAAT
1 TATTATGATTTTAGTAAATT-ATATAA-AATATTAAT
* *
95703358 TATTAAGAATTTTATTAAATTATATA
1 TATTATG-ATTTTAGTAAATTATATA
95703384 TTTTAATTAT
Statistics
Matches: 100, Mismatches: 18, Indels: 30
0.68 0.12 0.20
Matches are distributed among these distances:
31 2 0.02
32 5 0.05
33 11 0.11
34 6 0.06
35 9 0.09
36 8 0.08
37 30 0.30
38 28 0.28
39 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (35 bp):
TATTATGATTTTAGTAAATTATATAAAATATTAAT
Found at i:95703293 original size:16 final size:16
Alignment explanation
Indices: 95703272--95703317 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
95703262 TTATTAAATT
95703272 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
95703288 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
95703303 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
95703318 CTATATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:95703330 original size:107 final size:109
Alignment explanation
Indices: 95703207--95703422 Score: 400
Period size: 107 Copynumber: 2.0 Consensus size: 109
95703197 TATTTTATAG
* *
95703207 TATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
95703272 ATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
66 ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
95703315 TATC-TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
95703379 ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
66 ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
95703423 ATGATTAAAT
Statistics
Matches: 105, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
107 95 0.90
108 10 0.10
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.49
Consensus pattern (109 bp):
TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
Found at i:95703400 original size:16 final size:16
Alignment explanation
Indices: 95703379--95703420 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
95703369 TTATTAAATT
*
95703379 ATATATTTTAATTATA
1 ATATATTTTAATAATA
95703395 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
95703410 AT-TATGTTTAA
1 ATATAT-TTTAA
95703421 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:95703405 original size:15 final size:15
Alignment explanation
Indices: 95703370--95703411 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
95703360 TTAAGAATTT
*
95703370 TATTAAATTAT-ATA
1 TATTTAATTATAATA
95703384 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
95703398 TATTTAATAATAAT
1 TATTTAATTATAAT
95703412 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:95703435 original size:75 final size:74
Alignment explanation
Indices: 95703355--95703593 Score: 162
Period size: 79 Copynumber: 3.1 Consensus size: 74
95703345 TAAGAATATT
95703355 AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATA-ATTTAATAATAATTATGTTTA
95703420 AATATGATTA
65 AATATGATTA
* ** * * * * **
95703430 AATTATTTATTATTGATATTAATAATCTTATTAAAATTTAA--ATAACAATGACAATAATAATT-
1 AATTATTAAGAATT-TTATT-A-AA--TTA-TATATTTTAATTATAATAAT-TTAATAATAATTA
**** * * *
95703492 TACCAAAACAAAT-TTCTGCT
59 T-GTTTAA-ATATGAT-T--A
*
95703512 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATA-ATTTAATAATAATTATGTTTA
95703577 AATATGATTA
65 AATATGATTA
*
95703587 AAATATT
1 AATTATT
95703594 TATTATTGAT
Statistics
Matches: 113, Mismatches: 34, Indels: 34
0.62 0.19 0.19
Matches are distributed among these distances:
75 17 0.15
76 12 0.11
77 8 0.07
78 22 0.19
79 23 0.20
80 8 0.07
81 12 0.11
82 11 0.10
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.46
Consensus pattern (74 bp):
AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATAATTTAATAATAATTATGTTTAA
ATATGATTA
Found at i:95703526 original size:157 final size:157
Alignment explanation
Indices: 95703354--95703670 Score: 562
Period size: 157 Copynumber: 2.0 Consensus size: 157
95703344 ATAAGAATAT
* *
95703354 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTT
* * *
95703419 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATGACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
95703484 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
95703511 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTT
95703576 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
* *
95703641 TAATCATTTACTAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
95703668 TAA
1 TAA
95703671 GGGTATTCTA
Statistics
Matches: 152, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
157 152 1.00
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:95703814 original size:16 final size:16
Alignment explanation
Indices: 95703793--95703844 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
95703783 GATTTGCTAT
95703793 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
95703809 TACACCTCCAATCCAA
1 TACACCTCTAATCCAA
95703825 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
95703841 TACA
1 TACA
95703845 ACGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.23
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:95705513 original size:9 final size:9
Alignment explanation
Indices: 95705497--95705566 Score: 113
Period size: 9 Copynumber: 7.8 Consensus size: 9
95705487 GGTATTTTTC
95705497 GGTAATTCG
1 GGTAATTCG
*
95705506 GTTAATTCG
1 GGTAATTCG
*
95705515 GTTAATTCG
1 GGTAATTCG
*
95705524 GTTAATTCG
1 GGTAATTCG
95705533 GGTAATTCG
1 GGTAATTCG
95705542 GGTAATTCG
1 GGTAATTCG
95705551 GGTAATTCG
1 GGTAATTCG
95705560 GGTAATT
1 GGTAATT
95705567 TTTAACCAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 59 1.00
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.39
Consensus pattern (9 bp):
GGTAATTCG
Found at i:95709191 original size:56 final size:55
Alignment explanation
Indices: 95709079--95709191 Score: 190
Period size: 55 Copynumber: 2.0 Consensus size: 55
95709069 GCTTAAAAAT
*
95709079 AATATATAATAAATAATAAAACGTATAGTTTCAACGTATTAATAATAAGTTATAC
1 AATATATAATAAATAATAAAACGTATAGTTTAAACGTATTAATAATAAGTTATAC
* *
95709134 AATATATAATAAATAATTAAACGTATGGTTTGAAACGTATTAATAATAAGTTATAC
1 AATATATAATAAATAATAAAACGTATAGTTT-AAACGTATTAATAATAAGTTATAC
95709190 AA
1 AA
95709192 CATGTATGAT
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
55 29 0.54
56 25 0.46
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.35
Consensus pattern (55 bp):
AATATATAATAAATAATAAAACGTATAGTTTAAACGTATTAATAATAAGTTATAC
Found at i:95713314 original size:31 final size:30
Alignment explanation
Indices: 95713258--95713315 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
95713248 TAGCAAAATT
* *
95713258 AATAATAAAACAAGAGTTATACAATATCCA
1 AATAATAAAACAAGAATAATACAATATCCA
95713288 AATAATAAAAACAA-AATAATAGCAATAT
1 AATAAT-AAAACAAGAATAATA-CAATAT
95713316 AATAGTGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.46
31 13 0.54
ACGTcount: A:0.62, C:0.10, G:0.05, T:0.22
Consensus pattern (30 bp):
AATAATAAAACAAGAATAATACAATATCCA
Found at i:95713771 original size:27 final size:28
Alignment explanation
Indices: 95713729--95713792 Score: 80
Period size: 27 Copynumber: 2.3 Consensus size: 28
95713719 GAACAAACAT
95713729 TATT-AAATTTTAATAAAAAT-ATTAAAA
1 TATTAAAATTTTAATAAAAATCA-TAAAA
95713756 TATTAAAATTTT-ATAAAAATCATAAAA
1 TATTAAAATTTTAATAAAAATCATAAAA
*
95713783 AATATAAAAT
1 TAT-TAAAAT
95713793 ACATCAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
27 19 0.58
28 14 0.42
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (28 bp):
TATTAAAATTTTAATAAAAATCATAAAA
Found at i:95714028 original size:10 final size:10
Alignment explanation
Indices: 95714015--95714149 Score: 64
Period size: 10 Copynumber: 13.5 Consensus size: 10
95714005 TTCTTTACGT
95714015 TTTTTTATAA
1 TTTTTTATAA
*
95714025 TTTTCTTACAA
1 TTTT-TTATAA
* **
95714036 CTTTACA-AA
1 TTTTTTATAA
*
95714045 ATTTT-ATAA
1 TTTTTTATAA
*
95714054 TTTTTTCT-A
1 TTTTTTATAA
*
95714063 TATTTTATAA
1 TTTTTTATAA
*
95714073 TTTTTTTCTAA
1 -TTTTTTATAA
95714084 TTTTTTAATAA
1 TTTTTT-ATAA
** *
95714095 AATTTAACT-A
1 TTTTTTA-TAA
95714105 TTTTTTAT-A
1 TTTTTTATAA
95714114 TTTTTTAATAA
1 TTTTTT-ATAA
* *
95714125 TATTTAATAA
1 TTTTTTATAA
95714135 TTTTTTATAA
1 TTTTTTATAA
*
95714145 CTTTT
1 TTTTT
95714150 ATTTTTTTTA
Statistics
Matches: 92, Mismatches: 24, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
8 1 0.01
9 26 0.28
10 37 0.40
11 28 0.30
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:95714069 original size:19 final size:18
Alignment explanation
Indices: 95714044--95714092 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 18
95714034 AACTTTACAA
95714044 AATTTTATAATTTTTTCT
1 AATTTTATAATTTTTTCT
95714062 ATATTTTATAATTTTTTTCT
1 A-ATTTTATAA-TTTTTTCT
*
95714082 AATTTTTTAAT
1 AATTTTATAAT
95714093 AAAATTTAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 2 0.07
19 17 0.61
20 9 0.32
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (18 bp):
AATTTTATAATTTTTTCT
Found at i:95714150 original size:30 final size:30
Alignment explanation
Indices: 95714046--95714150 Score: 106
Period size: 30 Copynumber: 3.5 Consensus size: 30
95714036 CTTTACAAAA
** *
95714046 TTTTATAATTTTTTCT-ATATTTTATAATTT
1 TTTTATAATTTTTAATAATATTTAATAA-TT
* *
95714076 TTTTCTAATTTTTTAATAAAATTTAACT-ATT
1 TTTTATAA-TTTTTAATAATATTTAA-TAATT
*
95714107 TTTTATATTTTTTAATAATATTTAATAATT
1 TTTTATAATTTTTAATAATATTTAATAATT
*
95714137 TTTTATAACTTTTA
1 TTTTATAATTTTTA
95714151 TTTTTTTTAT
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
29 1 0.02
30 38 0.62
31 14 0.23
32 7 0.11
33 1 0.02
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (30 bp):
TTTTATAATTTTTAATAATATTTAATAATT
Found at i:95720253 original size:79 final size:79
Alignment explanation
Indices: 95720117--95720334 Score: 255
Period size: 79 Copynumber: 2.7 Consensus size: 79
95720107 TCGAATGATG
* * **
95720117 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGCATT
95720181 TGTGCGAGTTACTA-A
64 TGTGCGAGTTACTATA
* *
95720196 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGCATT
95720260 TGTGCGAGTTACTATA
64 TGTGCGAGTTACTATA
* * ** * *
95720276 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTT-AAGTCCGAAGG
95720335 TACGTGATTC
Statistics
Matches: 119, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 71 0.60
80 47 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTTG
TGCGAGTTACTATA
Found at i:95720308 original size:40 final size:40
Alignment explanation
Indices: 95720117--95720320 Score: 254
Period size: 40 Copynumber: 5.1 Consensus size: 40
95720107 TCGAATGATG
* *
95720117 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
95720157 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
95720196 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
95720236 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * ** *
95720276 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
95720316 TCCGG
1 TCCGG
95720321 TTAAATTCCG
Statistics
Matches: 143, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
39 35 0.24
40 100 0.70
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:95736025 original size:72 final size:72
Alignment explanation
Indices: 95735939--95736073 Score: 182
Period size: 72 Copynumber: 1.9 Consensus size: 72
95735929 GTGAGCTAGT
* * *
95735939 ATAAGACCATGTTTG-GAACATGGCATCAGCATTGATATGAGAGCTAGTGTAAGAACATGTTTGA
1 ATAAGACCATGTTTGAG-ACATGACATCAGCATCGATATGAGAGCCAGTGTAAGAACATGTTTGA
95736003 GACATAGC
65 GACATAGC
* * * **
95736011 ATAAGACCATGTTTGAGACATGACATCGGCCTCGATATGTGAGCCAGTGTAAGGCCATGTTTG
1 ATAAGACCATGTTTGAGACATGACATCAGCATCGATATGAGAGCCAGTGTAAGAACATGTTTG
95736074 GAACATGGCA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
72 53 0.98
73 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (72 bp):
ATAAGACCATGTTTGAGACATGACATCAGCATCGATATGAGAGCCAGTGTAAGAACATGTTTGAG
ACATAGC
Found at i:95736073 original size:48 final size:47
Alignment explanation
Indices: 95736012--95736232 Score: 223
Period size: 48 Copynumber: 4.6 Consensus size: 47
95736002 AGACATAGCA
* *
95736012 TAAGACCATGTTTGAGACATGACATCGGCCTCGATATGTGAGCCAGTG
1 TAAGACCATGTTTG-GACATGGCATCGGCCTCGATATGAGAGCCAGTG
* * ** *
95736060 TAAGGCCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTG
1 TAAGACCATGTTTGG-ACATGGCATCGGCCTCGATATGAGAGCCAGTG
* * *
95736108 TAAGACCATGTCTGGGACATGGCATCGGCCTTGACATGTAG-G-CAGGTG
1 TAAGACCATGT-TTGGACATGGCATCGGCCTCGATATG-AGAGCCA-GTG
*
95736156 TAAGACCATGTTTGGAACATGGCATCGACAC-CGATATATGAGAGCCAGTG
1 TAAGACCATGTTTGG-ACATGGCATCGGC-CTCG--ATATGAGAGCCAGTG
*
95736206 TAAGACCATGTTTGGGACATGGTATCG
1 TAAGACCATGTTT-GGACATGGCATCG
95736233 ACATCTTACC
Statistics
Matches: 144, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
47 5 0.03
48 96 0.67
49 8 0.06
50 31 0.22
51 4 0.03
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
TAAGACCATGTTTGGACATGGCATCGGCCTCGATATGAGAGCCAGTG
Found at i:95736165 original size:96 final size:97
Alignment explanation
Indices: 95736012--95736232 Score: 302
Period size: 96 Copynumber: 2.3 Consensus size: 97
95736002 AGACATAGCA
* * * *
95736012 TAAGACCATGTTTGAGACATGACATCGGCCTCGATATGTGAGCCAGTGTAAGGCCATGTTTGGAA
1 TAAGACCATGTTTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAGACCATGTTTGGAA
* ** *
95736077 CATGGCATCGGCA-TTTATATGAGAGCTAGTG
66 CATGGCATCGACACGATATATGAGAGCCAGTG
* * *
95736108 TAAGACCATGTCTGGGACATGGCATCGGCCTTGACATGT-AGGCAGGTGTAAGACCATGTTTGGA
1 TAAGACCATGTTTGGGACATGGCATCGGCCTCGACATGTGAGCCA-GTGTAAGACCATGTTTGGA
95736172 ACATGGCATCGACACCGATATATGAGAGCCAGTG
65 ACATGGCATCGACA-CGATATATGAGAGCCAGTG
*
95736206 TAAGACCATGTTTGGGACATGGTATCG
1 TAAGACCATGTTTGGGACATGGCATCG
95736233 ACATCTTACC
Statistics
Matches: 109, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
95 4 0.04
96 65 0.60
98 40 0.37
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (97 bp):
TAAGACCATGTTTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAGACCATGTTTGGAA
CATGGCATCGACACGATATATGAGAGCCAGTG
Found at i:95736332 original size:21 final size:21
Alignment explanation
Indices: 95736303--95736342 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
95736293 CGAGTAATTT
95736303 AAAAATTAT-ATTATGATTGAG
1 AAAAATTATGATTAT-ATTGAG
*
95736324 AAAAGTTATGATTATATTG
1 AAAAATTATGATTATATTG
95736343 CAAGTGGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.45, C:0.00, G:0.15, T:0.40
Consensus pattern (21 bp):
AAAAATTATGATTATATTGAG
Found at i:95740511 original size:25 final size:25
Alignment explanation
Indices: 95740482--95740529 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
95740472 TTATAACATG
* *
95740482 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
95740507 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
95740530 GTTTAAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:95740630 original size:20 final size:20
Alignment explanation
Indices: 95740566--95740630 Score: 103
Period size: 20 Copynumber: 3.2 Consensus size: 20
95740556 ATTTTGAAAA
*
95740566 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
95740586 ACATAACATGTATGATATGC
1 ACATGATATGTATGATATGC
95740606 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
95740626 ACATG
1 ACATG
95740631 CTGTATTCAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Done.