Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 282 of 373
Found at i:95740709 original size:24 final size:24
Alignment explanation
Indices: 95740682--95740822 Score: 209
Period size: 23 Copynumber: 6.0 Consensus size: 24
95740672 GAGGAAGTGA
95740682 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95740706 AAAA-GGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95740729 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
95740752 -AAAGGGCTTATGCCGCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
95740775 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
95740799 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
95740823 ATGTTAAAGT
Statistics
Matches: 108, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
22 3 0.03
23 60 0.56
24 34 0.31
25 11 0.10
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:95741056 original size:31 final size:31
Alignment explanation
Indices: 95741021--95741084 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
95741011 CGTTTACAGT
* *
95741021 AAAGGCTTTGGCCCAGTAATATTAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
95741052 AAAGGCTTCGGCCTAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
95741083 AA
1 AA
95741085 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:95750139 original size:43 final size:42
Alignment explanation
Indices: 95750091--95750250 Score: 146
Period size: 43 Copynumber: 3.8 Consensus size: 42
95750081 TGTGACAACA
* *
95750091 TGTAAGACCTTGTCTGGGACATTGGCATTGTATTGAGATTACG
1 TGTAAGACCATGTCTAGGACATTGGCATTGTATTG-GATTACG
* *
95750134 TGTAAGACCATGTCTAGGACATTGGCATAGTTAATT-GATTTCG
1 TGTAAGACCATGTCTAGGACATTGGCATTG-T-ATTGGATTACG
* * * * *
95750177 TGTAAGACCCTGTCTAGGACAGTGGCATCG-ATATGTGATAACA
1 TGTAAGACCATGTCTAGGACATTGGCATTGTAT-TG-GATTACG
* * *
95750220 TGTAAGACCATATCTGGGATA-TGGCATTGTA
1 TGTAAGACCATGTCTAGGACATTGGCATTGTA
95750251 CTAGTTTATG
Statistics
Matches: 96, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 7 0.07
43 82 0.85
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTAGGACATTGGCATTGTATTGGATTACG
Found at i:95751718 original size:4 final size:4
Alignment explanation
Indices: 95751709--95751737 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
95751699 AGATGTTAAT
95751709 TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG T
95751738 GAATTGTGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:95757996 original size:8 final size:8
Alignment explanation
Indices: 95757983--95758007 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
95757973 TTTCACCATG
95757983 AATTTTAC
1 AATTTTAC
95757991 AATTTTAC
1 AATTTTAC
95757999 AATTTTAC
1 AATTTTAC
95758007 A
1 A
95758008 CATAAATCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (8 bp):
AATTTTAC
Found at i:95763641 original size:56 final size:56
Alignment explanation
Indices: 95763575--95763680 Score: 167
Period size: 56 Copynumber: 1.9 Consensus size: 56
95763565 GACCACGACA
* * *
95763575 TCGATATATGTGTGCGAGTAAGACGATGTTTAATACGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTCTAATACGTTGGCATCGATATGTGATT
* *
95763631 TCGATATATGTGTGCGAGTAAGACCACGTCTAGTATGTTGGCATCGATAT
1 TCGATATATGTGTGCGAGTAAGACCACGTCTAATACGTTGGCATCGATAT
95763681 ATGTGGTTAC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 45 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCACGTCTAATACGTTGGCATCGATATGTGATT
Found at i:95764203 original size:15 final size:15
Alignment explanation
Indices: 95764182--95764226 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
95764172 TTCAAGTATA
95764182 CGAATTTGGTTTATG
1 CGAATTTGGTTTATG
*
95764197 TGAATTTGGTTTATG
1 CGAATTTGGTTTATG
*
95764212 CAAATTTGGTTTATG
1 CGAATTTGGTTTATG
95764227 GATTTTCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.22, C:0.04, G:0.24, T:0.49
Consensus pattern (15 bp):
CGAATTTGGTTTATG
Found at i:95768383 original size:40 final size:40
Alignment explanation
Indices: 95768324--95768545 Score: 282
Period size: 40 Copynumber: 5.5 Consensus size: 40
95768314 GAGGATTATA
*
95768324 TCCGGGTTAAGTCTCGAAGGCATTCGTGCTGGTTGCTATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATT
* * * *
95768364 TCCAGGTTAAGTCTCGAAGGCATTCGTGCTAGTTGTTATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATT
* * *
95768404 TCTGGGTTAAGTCCTGAAGGCATTCGTGCTGGTTGTTATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATT
* * *
95768444 TCCGGGTTAAGCCCCGAAGGCATTCGTGTTGGTCGCTATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATT
* * * **
95768484 TCCGGGTTAAGTCCCGAAGACATTTGTGCTGGTTGTTACA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATT
* *
95768524 TCCGGGCTAAATCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCA
95768546 ATTGGGTTGG
Statistics
Matches: 157, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 157 1.00
ACGTcount: A:0.18, C:0.21, G:0.28, T:0.33
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATT
Found at i:95774611 original size:40 final size:40
Alignment explanation
Indices: 95774502--95774647 Score: 165
Period size: 40 Copynumber: 3.6 Consensus size: 40
95774492 TTGAATGATG
* * * * *
95774502 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
95774542 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
95774582 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
95774623 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
95774648 AACGAGGAGC
Statistics
Matches: 95, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
39 1 0.01
40 84 0.88
41 10 0.11
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:95777760 original size:15 final size:15
Alignment explanation
Indices: 95777739--95777783 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
95777729 TTCAAGTATA
95777739 CGAATTTGGTTTATG
1 CGAATTTGGTTTATG
*
95777754 TGAATTTGGTTTATG
1 CGAATTTGGTTTATG
*
95777769 CAAATTTGGTTTATG
1 CGAATTTGGTTTATG
95777784 GATTTTCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.22, C:0.04, G:0.24, T:0.49
Consensus pattern (15 bp):
CGAATTTGGTTTATG
Found at i:95780398 original size:42 final size:42
Alignment explanation
Indices: 95780349--95780445 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 42
95780339 CTGAGACTAC
95780349 GTGTAAGACCATATCT-AGGATATGACATCAATATCAGAA-TTT
1 GTGTAAGACCATATCTGA-GATATGACATCAATATCA-AATTTT
* * * * *
95780391 GTGTAAGACCATATCTGAGCTATGGCATCGATGTGAAATTTT
1 GTGTAAGACCATATCTGAGATATGACATCAATATCAAATTTT
95780433 GTGTAAGACCATA
1 GTGTAAGACCATA
95780446 GCTGGGCTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
41 2 0.04
42 45 0.94
43 1 0.02
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATATCTGAGATATGACATCAATATCAAATTTT
Found at i:95783292 original size:40 final size:40
Alignment explanation
Indices: 95783237--95783544 Score: 535
Period size: 40 Copynumber: 7.7 Consensus size: 40
95783227 GAGCATTGGA
*
95783237 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
95783277 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
95783317 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
95783357 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
95783397 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
95783437 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
95783477 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
95783517 ATATATCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
95783545 ATGTGTTTGC
Statistics
Matches: 255, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 255 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:95786436 original size:25 final size:25
Alignment explanation
Indices: 95786407--95786454 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
95786397 TTATAACATG
* * *
95786407 AAAATGACCTTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
95786432 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
95786455 GTTTAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:95786521 original size:20 final size:20
Alignment explanation
Indices: 95786498--95786551 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
95786488 AAAACATGGT
95786498 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
95786518 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
95786538 ATGTATGATATGCA
1 ATGTATGATATGCA
95786552 TATGCTGTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:95786555 original size:11 final size:11
Alignment explanation
Indices: 95786501--95786555 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
95786491 ACATGGTATG
95786501 TATGATATGCA
1 TATGATATGCA
* *
95786512 CATGACATG--
1 TATGATATGCA
95786521 TATGATATGCA
1 TATGATATGCA
*
95786532 CATGATATG--
1 TATGATATGCA
95786541 TATGATATGCA
1 TATGATATGCA
95786552 TATG
1 TATG
95786556 CTGTATTCAT
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.35
Consensus pattern (11 bp):
TATGATATGCA
Found at i:95786638 original size:23 final size:23
Alignment explanation
Indices: 95786608--95786680 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
95786598 AGGAAGTGAA
95786608 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
95786631 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
95786654 AAAAGGGCTTTTTCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
95786678 AAA
1 AAA
95786681 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 26 0.55
24 21 0.45
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:95786697 original size:25 final size:24
Alignment explanation
Indices: 95786607--95786701 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
95786597 GAGGAAGTGA
95786607 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95786631 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
95786654 AAAAGGGCTTTTTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
95786678 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
95786702 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.37
24 29 0.46
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:95786932 original size:31 final size:31
Alignment explanation
Indices: 95786897--95786958 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
95786887 TTTACGGTAT
95786897 AGGCTTCGGCCCAGTAATATGAAATATGAAA
1 AGGCTTCGGCCCAGTAATATGAAATATGAAA
** *
95786928 AGGCTTCGGCCCAGTGTTTTGAAATATGAAA
1 AGGCTTCGGCCCAGTAATATGAAATATGAAA
95786959 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (31 bp):
AGGCTTCGGCCCAGTAATATGAAATATGAAA
Found at i:95794614 original size:15 final size:16
Alignment explanation
Indices: 95794592--95794634 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
95794582 CATGGTATGT
95794592 ATGATATGCATATG-AC
1 ATGATATG-ATATGCAC
95794608 ATG-TATGATATGCAC
1 ATGATATGATATGCAC
95794623 ATGATATG-TATG
1 ATGATATGATATG
95794635 ATATGCACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 5 0.20
15 13 0.52
16 7 0.28
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGATATGATATGCAC
Found at i:95794637 original size:9 final size:9
Alignment explanation
Indices: 95794587--95794639 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
95794577 AAAAACATGG
95794587 TATGTATGA
1 TATGTATGA
95794596 TATGCATATGA
1 TATG--TATGA
*
95794607 CATGTATGA
1 TATGTATGA
*
95794616 TATGCACATGA
1 TATG--TATGA
95794627 TATGTATGA
1 TATGTATGA
95794636 TATG
1 TATG
95794640 CACATGATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 20 0.56
11 16 0.44
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (9 bp):
TATGTATGA
Found at i:95794647 original size:20 final size:20
Alignment explanation
Indices: 95794581--95794647 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
95794571 ATTTTGAAAA
*
95794581 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
95794601 ATATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
95794621 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
95794641 ACATGAT
1 ACATGAT
95794648 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:95794809 original size:24 final size:24
Alignment explanation
Indices: 95794697--95794903 Score: 290
Period size: 23 Copynumber: 9.0 Consensus size: 24
95794687 GAGGAAGTGA
*
95794697 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95794721 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95794744 -AAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
95794766 AAAAGGGC--AT--ACCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95794786 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95794810 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
95794834 -AAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
95794856 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
95794880 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
95794904 ATGATAAATC
Statistics
Matches: 168, Mismatches: 6, Indels: 17
0.88 0.03 0.09
Matches are distributed among these distances:
20 17 0.10
21 2 0.01
22 22 0.13
23 64 0.38
24 52 0.31
25 11 0.07
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:95794849 original size:90 final size:89
Alignment explanation
Indices: 95794697--95794863 Score: 316
Period size: 90 Copynumber: 1.9 Consensus size: 89
95794687 GAGGAAGTGA
95794697 AAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCAGT
1 AAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCAGT
95794762 TATTAAAAGGGCATACCAGTTATT
66 TATTAAAAGGGCATACCAGTTATT
*
95794786 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCAG
1 AAAAGGGCTTATGCCCCAATTATT-AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCAG
95794851 TTATTAAAAGGGC
65 TTATTAAAAGGGC
95794864 TTTTGCCCCA
Statistics
Matches: 76, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
89 23 0.30
90 53 0.70
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (89 bp):
AAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCAGT
TATTAAAAGGGCATACCAGTTATT
Found at i:95795135 original size:31 final size:31
Alignment explanation
Indices: 95795097--95795160 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
95795087 CGTTTACAGT
95795097 AAAGGCTTCGACCCAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
* **
95795128 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
95795159 AA
1 AA
95795161 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:95796082 original size:21 final size:21
Alignment explanation
Indices: 95796058--95796100 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
95796048 ATGTGATTGA
*
95796058 TATGAATAG-ATGTTAATTATG
1 TATGAAT-GTATGTGAATTATG
*
95796079 TATGTATGTATGTGAATTATG
1 TATGAATGTATGTGAATTATG
95796100 T
1 T
95796101 GTGATTTTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.47
Consensus pattern (21 bp):
TATGAATGTATGTGAATTATG
Found at i:95798915 original size:47 final size:47
Alignment explanation
Indices: 95798837--95799290 Score: 728
Period size: 47 Copynumber: 9.6 Consensus size: 47
95798827 CCCTTCGGGA
* * * * * *
95798837 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
95798884 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
95798931 CTTATCACATATATACACTTTCAGATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95798978 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95799025 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95799072 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
95799119 CTTATCACATATATATACACGTTCACATTCATGACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95799168 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
95799215 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
95799264 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
95799291 TATTCAAATA
Statistics
Matches: 379, Mismatches: 24, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 291 0.77
49 88 0.23
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:95804908 original size:34 final size:34
Alignment explanation
Indices: 95804865--95804933 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
95804855 ATATACAAAG
95804865 AAAATAAAGCTTTGGAGAGCATTTAGGGTTCGGC
1 AAAATAAAGCTTTGGAGAGCATTTAGGGTTCGGC
95804899 AAAATAAAGCTTTGGAGAGCATTTAGGGTTCGGC
1 AAAATAAAGCTTTGGAGAGCATTTAGGGTTCGGC
95804933 A
1 A
95804934 CTAATCTAGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (34 bp):
AAAATAAAGCTTTGGAGAGCATTTAGGGTTCGGC
Found at i:95805847 original size:43 final size:43
Alignment explanation
Indices: 95805786--95805868 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
95805776 GTTAGTATAC
*
95805786 TCTGGGACATTGGCATTGTATTGAGATTACGTGTAAGACCTTG
1 TCTGGGACATTGGCATTGTATTGAGATTACATGTAAGACCTTG
95805829 TCTGGGACATTGGCATTGTATTGAGATTACATGTAAGACC
1 TCTGGGACATTGGCATTGTATTGAGATTACATGTAAGACC
95805869 ATGTATGAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (43 bp):
TCTGGGACATTGGCATTGTATTGAGATTACATGTAAGACCTTG
Found at i:95828782 original size:10 final size:10
Alignment explanation
Indices: 95828767--95828791 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
95828757 TTTCCTTTAT
95828767 TTTTTTTAGG
1 TTTTTTTAGG
95828777 TTTTTTTAGG
1 TTTTTTTAGG
95828787 TTTTT
1 TTTTT
95828792 AGTTTTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.16, T:0.76
Consensus pattern (10 bp):
TTTTTTTAGG
Found at i:95831004 original size:23 final size:23
Alignment explanation
Indices: 95830956--95831004 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
95830946 TCATTTATTC
* *
95830956 TTTTCTCTCCTTTTGCCTTTCCA
1 TTTTCTCTCCTTTTCCCTTTCAA
*
95830979 TTTTCTCTTC-TTTCCCTTGTCAA
1 TTTTCTCTCCTTTTCCCTT-TCAA
95831002 TTT
1 TTT
95831005 CCCCTCTTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.06, C:0.31, G:0.04, T:0.59
Consensus pattern (23 bp):
TTTTCTCTCCTTTTCCCTTTCAA
Found at i:95837789 original size:43 final size:44
Alignment explanation
Indices: 95837740--95837890 Score: 218
Period size: 43 Copynumber: 3.5 Consensus size: 44
95837730 GATTGCCGAG
* *
95837740 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGTATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
*
95837784 -TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
95837826 ATATGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
*
95837869 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
95837891 ACTTGGGATA
Statistics
Matches: 96, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
42 1 0.01
43 95 0.99
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:95840460 original size:19 final size:20
Alignment explanation
Indices: 95840436--95840480 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
95840426 ATCCAAACAC
*
95840436 CAGAAAAGCAAATTA-TTTT
1 CAGAAAAGCAAATCATTTTT
*
95840455 CAGAAAAGTAAATCATTTTT
1 CAGAAAAGCAAATCATTTTT
95840475 CAGAAA
1 CAGAAA
95840481 TTATTTTCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.29
Consensus pattern (20 bp):
CAGAAAAGCAAATCATTTTT
Found at i:95842758 original size:28 final size:28
Alignment explanation
Indices: 95842727--95842852 Score: 121
Period size: 29 Copynumber: 4.4 Consensus size: 28
95842717 ACATACATGC
*
95842727 ATATGGCCCA-CTAAACCCAATCTCATTT
1 ATATGGCCCATC-AAGCCCAATCTCATTT
*
95842755 ATATGGCCCATCCAGCCCAAT-TCACGTTT
1 ATATGGCCCATCAAGCCCAATCTCA--TTT
* * * *
95842784 ATATGACCCATCAGGCCCAATTCACATTC
1 ATATGGCCCATCAAGCCCAA-TCTCATTT
* *
95842813 ATATGGCCCATTAGGCCCAATCTCATTT
1 ATATGGCCCATCAAGCCCAATCTCATTT
*
95842841 ATATGACCCATC
1 ATATGGCCCATC
95842853 TGGCCCAAAT
Statistics
Matches: 80, Mismatches: 13, Indels: 10
0.78 0.13 0.10
Matches are distributed among these distances:
27 3 0.04
28 33 0.41
29 41 0.51
30 1 0.01
31 2 0.03
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.28
Consensus pattern (28 bp):
ATATGGCCCATCAAGCCCAATCTCATTT
Found at i:95842793 original size:29 final size:28
Alignment explanation
Indices: 95842742--95842870 Score: 129
Period size: 29 Copynumber: 4.5 Consensus size: 28
95842732 GCCCACTAAA
*
95842742 CCCAATCTCA-TTTATATGGCCCATCCA-G
1 CCCAAT-TCACTTTATATGACCCAT-CAGG
95842770 CCCAATTCACGTTTATATGACCCATCAGG
1 CCCAATTCAC-TTTATATGACCCATCAGG
* * *
95842799 CCCAATTCACATTCATATGGCCCATTAGG
1 CCCAATTCAC-TTTATATGACCCATCAGG
*
95842828 CCCAATCTCA-TTTATATGACCCATCTGG
1 CCCAAT-TCACTTTATATGACCCATCAGG
* *
95842856 CCCAAATCACATTAT
1 CCCAATTCACTTTAT
95842871 GTTCGTGCTC
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
27 6 0.07
28 31 0.36
29 45 0.53
30 3 0.04
ACGTcount: A:0.28, C:0.33, G:0.11, T:0.29
Consensus pattern (28 bp):
CCCAATTCACTTTATATGACCCATCAGG
Found at i:95842844 original size:57 final size:56
Alignment explanation
Indices: 95842742--95842868 Score: 159
Period size: 57 Copynumber: 2.2 Consensus size: 56
95842732 GCCCACTAAA
* *
95842742 CCCAATCTCATTTATATGGCCCATCCAGCCCAATTCACGTTTATATGACCCATCAGG
1 CCCAATCACATTCATATGGCCCATCCAGCCCAATTCAC-TTTATATGACCCATCAGG
* *
95842799 CCCAATTCACATTCATATGGCCCAT-TAGGCCCAATCTCA-TTTATATGACCCATCTGG
1 CCCAA-TCACATTCATATGGCCCATCCA-GCCCAAT-TCACTTTATATGACCCATCAGG
95842856 CCCAAATCACATT
1 CCC-AATCACATT
95842869 ATGTTCGTGC
Statistics
Matches: 62, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
57 33 0.53
58 26 0.42
59 3 0.05
ACGTcount: A:0.28, C:0.33, G:0.11, T:0.28
Consensus pattern (56 bp):
CCCAATCACATTCATATGGCCCATCCAGCCCAATTCACTTTATATGACCCATCAGG
Found at i:95842955 original size:17 final size:18
Alignment explanation
Indices: 95842933--95842982 Score: 57
Period size: 19 Copynumber: 2.8 Consensus size: 18
95842923 GGCCTGTTAT
95842933 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
95842950 GGGCCCATTTAGCCCATTC
1 GGGCCCATATAGCCCA-TC
* *
95842969 TGGCCCATTTAGCC
1 GGGCCCATATAGCC
95842983 TATTCACAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.24
18 7 0.24
19 15 0.52
ACGTcount: A:0.18, C:0.38, G:0.22, T:0.22
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:95842975 original size:19 final size:19
Alignment explanation
Indices: 95842941--95842987 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
95842931 ATGGGCCCAA
95842941 TAGCCCA-TCGGGCCCATT
1 TAGCCCATTCGGGCCCATT
*
95842959 TAGCCCATTCTGGCCCATT
1 TAGCCCATTCGGGCCCATT
*
95842978 TAGCCTATTC
1 TAGCCCATTC
95842988 ACAACCCAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 7 0.27
19 19 0.73
ACGTcount: A:0.17, C:0.36, G:0.17, T:0.30
Consensus pattern (19 bp):
TAGCCCATTCGGGCCCATT
Found at i:95843124 original size:16 final size:16
Alignment explanation
Indices: 95843084--95843126 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
95843074 ATAGCCAAAC
95843084 TTTCGGCTTTTCGACA
1 TTTCGGCTTTTCGACA
*
95843100 TTTTGGCTTTTCGACA
1 TTTCGGCTTTTCGACA
*
95843116 TTTCAGCTTTT
1 TTTCGGCTTTT
95843127 GCTGATCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.21, G:0.16, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTCGACA
Found at i:95851145 original size:42 final size:42
Alignment explanation
Indices: 95851033--95851155 Score: 140
Period size: 43 Copynumber: 2.9 Consensus size: 42
95851023 AGAAAGCTCG
* ***
95851033 TACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAA
1 TACAATGCCAACGTCCCAGACATGGTCTTACACAAAATCAAA
* * * *
95851075 TATCGATGCC-ACTATCCCAGAAAGGGTCTTACACAAAATCAAA
1 TA-CAATGCCAAC-GTCCCAGACATGGTCTTACACAAAATCAAA
95851118 TACAATGCCAACGTCCCAGACATGGTCTTACACGAAAA
1 TACAATGCCAACGTCCCAGACATGGTCTTACAC-AAAA
95851156 CACATATCGG
Statistics
Matches: 65, Mismatches: 12, Indels: 7
0.77 0.14 0.08
Matches are distributed among these distances:
42 28 0.43
43 37 0.57
ACGTcount: A:0.37, C:0.27, G:0.15, T:0.21
Consensus pattern (42 bp):
TACAATGCCAACGTCCCAGACATGGTCTTACACAAAATCAAA
Found at i:95853328 original size:28 final size:28
Alignment explanation
Indices: 95853263--95853413 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
95853253 GAGATTGGCG
* * * *
95853263 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
* *
95853292 CTAAGTGTGCAAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
95853320 CTAAATGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
95853348 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
95853376 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
95853403 CTGAGTGTGCG
1 CTAAGTGTGCG
95853414 GACTTAATAT
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
27 24 0.22
28 73 0.66
29 14 0.13
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:95870869 original size:43 final size:43
Alignment explanation
Indices: 95870779--95870875 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 43
95870769 TGAAATTATG
* ** *
95870779 TGTAAGACCATGTCTGGGACATTGGCATCATTAATTGATTTCG
1 TGTAAGACCATGTCTGGGACAGTGGCATCATTAATTGATAACA
95870822 TGTAAGA-CACTGTCTGGGACAGTGGCATCGA-T-ATGTGATAACA
1 TGTAAGACCA-TGTCTGGGACAGTGGCATC-ATTAAT-TGATAACA
95870865 TGTAAGACCAT
1 TGTAAGACCAT
95870876 ATTTGGGATA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
42 4 0.09
43 39 0.85
44 3 0.07
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCATTAATTGATAACA
Found at i:95872366 original size:4 final size:4
Alignment explanation
Indices: 95872357--95872429 Score: 146
Period size: 4 Copynumber: 18.2 Consensus size: 4
95872347 AGATGTTAAT
95872357 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
95872405 TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG T
95872430 GAAATGTGTG
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 69 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:95872844 original size:54 final size:54
Alignment explanation
Indices: 95872752--95872854 Score: 152
Period size: 54 Copynumber: 1.9 Consensus size: 54
95872742 AAAAATTGAG
* * *
95872752 GCCATGTAAGCTGGAGTCACACAGACGTGTATCTAAACCATATAACTCATTAAA
1 GCCATATAAGCTGGAGTCACACAGACGTGAATCCAAACCATATAACTCATTAAA
* * *
95872806 GCCATATAAGCTGGAGTCATACGGTCGTGAATCCAAACCATATAACTCA
1 GCCATATAAGCTGGAGTCACACAGACGTGAATCCAAACCATATAACTCA
95872855 CTGAGGATAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.23
Consensus pattern (54 bp):
GCCATATAAGCTGGAGTCACACAGACGTGAATCCAAACCATATAACTCATTAAA
Found at i:95878488 original size:27 final size:27
Alignment explanation
Indices: 95878450--95878502 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
95878440 TTACTAACTA
95878450 ATACTAATCTAATACTAATAGAATAGG
1 ATACTAATCTAATACTAATAGAATAGG
95878477 ATACTAATCTAATACTAATAGAATAG
1 ATACTAATCTAATACTAATAGAATAG
95878503 AAAAAAATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.30
Consensus pattern (27 bp):
ATACTAATCTAATACTAATAGAATAGG
Found at i:95878513 original size:15 final size:15
Alignment explanation
Indices: 95878493--95878521 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
95878483 ATCTAATACT
95878493 AATAGAATAGAAAAA
1 AATAGAATAGAAAAA
95878508 AATAGAATAGAAAA
1 AATAGAATAGAAAA
95878522 TACTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (15 bp):
AATAGAATAGAAAAA
Found at i:95880613 original size:23 final size:23
Alignment explanation
Indices: 95880571--95880624 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 23
95880561 AAATTATATC
*
95880571 ATATTATTAAATTTACATTTTAAA
1 ATATTATAAAATTTACA-TTTAAA
95880595 ATATTATAAAATTTA-ATTTAAA
1 ATATTATAAAATTTACATTTAAA
95880617 ATTATTAT
1 A-TATTAT
95880625 TTTAAAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 7 0.25
23 7 0.25
24 14 0.50
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (23 bp):
ATATTATAAAATTTACATTTAAA
Found at i:95880685 original size:17 final size:17
Alignment explanation
Indices: 95880657--95880700 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
95880647 ATTTTAGGAC
95880657 AATTATACATTTAA-AAA
1 AATTATA-ATTTAATAAA
95880674 TAATTATAATTTAATAAA
1 -AATTATAATTTAATAAA
*
95880692 CATTATAAT
1 AATTATAAT
95880701 AGTTACATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (17 bp):
AATTATAATTTAATAAA
Found at i:95881593 original size:10 final size:10
Alignment explanation
Indices: 95881570--95881630 Score: 50
Period size: 10 Copynumber: 6.0 Consensus size: 10
95881560 TAAAAGATCA
*
95881570 TTTTTATTATT
1 TTTTTA-TAAT
95881581 TTTTTATAAT
1 TTTTTATAAT
95881591 TTTTTATAAT
1 TTTTTATAAT
* * *
95881601 TTGTAATCAT
1 TTTTTATAAT
* *
95881611 TCTTAATAAT
1 TTTTTATAAT
*
95881621 TTCTTATAAT
1 TTTTTATAAT
95881631 GATTAATAAT
Statistics
Matches: 40, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
10 34 0.85
11 6 0.15
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:95887451 original size:25 final size:25
Alignment explanation
Indices: 95887423--95887470 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
95887413 AAAGAGTTCA
95887423 CCACAAAGGCTTCACAGAGCATTTT
1 CCACAAAGGCTTCACAGAGCATTTT
* *
95887448 CCACAAAGGCTTTATAGAGCATT
1 CCACAAAGGCTTCACAGAGCATT
95887471 CATTACAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
CCACAAAGGCTTCACAGAGCATTTT
Found at i:95887478 original size:25 final size:24
Alignment explanation
Indices: 95887424--95887487 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 24
95887414 AAGAGTTCAC
95887424 CACAAAGGCTTCACAGAGCATTTT
1 CACAAAGGCTTCACAGAGCATTTT
* *
95887448 CCACAAAGGCTTTATAGAGCATTCATT
1 -CACAAAGGCTTCACAGAGCATT--TT
*
95887475 -ACAAAGGATTCAC
1 CACAAAGGCTTCAC
95887488 TAAAGAATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
25 30 0.94
27 2 0.06
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (24 bp):
CACAAAGGCTTCACAGAGCATTTT
Found at i:95887479 original size:50 final size:50
Alignment explanation
Indices: 95887387--95887510 Score: 133
Period size: 50 Copynumber: 2.5 Consensus size: 50
95887377 AAAGTCTTTT
* * *
95887387 CAGAGAATTTGCCACAAAGTCTTTATAAAGAGTTCACCACAAAGGCTTCA
1 CAGAGAATTTACCACAAAGGCTTTATAAAGAGTTCACCACAAAGGATTCA
* * * **
95887437 CAGAGCATTTTCCACAAAGGCTTTATAGAGCA-TTCATTACAAAGGATTCA
1 CAGAGAATTTACCACAAAGGCTTTATAAAG-AGTTCACCACAAAGGATTCA
* *
95887487 CTAAAGAATTCACCACAAAGGCTT
1 C-AGAGAATTTACCACAAAGGCTT
95887511 GATTTGGTTG
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
50 42 0.69
51 19 0.31
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (50 bp):
CAGAGAATTTACCACAAAGGCTTTATAAAGAGTTCACCACAAAGGATTCA
Found at i:95888406 original size:153 final size:153
Alignment explanation
Indices: 95888123--95888429 Score: 560
Period size: 153 Copynumber: 2.0 Consensus size: 153
95888113 GATAGGTCTA
* **
95888123 GAGAGTCACCTTTACCTCTATCCAAAGCTTCTATTTCGATTGTTCGTCCTGATCCAACAACAACA
1 GAGACTCACCTTTACCTCTATCCAAAGCTTCTATTTCGATTGCCCGTCCTGATCCAACAACAACA
* *
95888188 ACTACTTAAAAGATCATAAAATTTCCATTAGAATCCCCATTATAGATAGTTTACTATCGTTCCAA
66 ACTACTTAAAAGATCATAAAATTTCCATTAGAATCCCCATTACAGATAGTTTACTATCATTCCAA
95888253 TCATATAGCTCCCCTAAGCAGGG
131 TCATATAGCTCCCCTAAGCAGGG
95888276 GAGACTCACCTTTACCTCTATCCAAAGCTTCTATTTCGATTGCCCGTCCTGATCCAACAACAACA
1 GAGACTCACCTTTACCTCTATCCAAAGCTTCTATTTCGATTGCCCGTCCTGATCCAACAACAACA
*
95888341 ACTACTTAAAAGATCATAAAATTTCCATTAGAATCCCTATTACAGATAGTTTACTATCATTCCAA
66 ACTACTTAAAAGATCATAAAATTTCCATTAGAATCCCCATTACAGATAGTTTACTATCATTCCAA
95888406 TCATATAGCTCCCCTAAGCAGGG
131 TCATATAGCTCCCCTAAGCAGGG
95888429 G
1 G
95888430 CTTCCCAATC
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
153 148 1.00
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.30
Consensus pattern (153 bp):
GAGACTCACCTTTACCTCTATCCAAAGCTTCTATTTCGATTGCCCGTCCTGATCCAACAACAACA
ACTACTTAAAAGATCATAAAATTTCCATTAGAATCCCCATTACAGATAGTTTACTATCATTCCAA
TCATATAGCTCCCCTAAGCAGGG
Found at i:95896843 original size:64 final size:64
Alignment explanation
Indices: 95896763--95896947 Score: 187
Period size: 67 Copynumber: 2.9 Consensus size: 64
95896753 AGACATTATG
* * *
95896763 ATGTAGCTAGGTCGCATGGGTGAG-ACTATGTGTACACCATGTGGACAAGAGAGCTAGGGGATAT
1 ATGTAGCTAGGTCGCATGGGTG-GTACTATGTGTACACCATGTGGACAAGAGAGCTACGAGATAA
* * * * * *
95896827 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGG-TACTA-TG-TGTACACCATGTGGACAAGAGAGCTACGAGAT
95896892 AA
63 AA
* * * *
95896894 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGCT
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTGGACAAGAGAGCT
95896948 GAACTATATG
Statistics
Matches: 97, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
63 21 0.22
64 22 0.23
65 5 0.05
66 18 0.19
67 29 0.30
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTGGACAAGAGAGCTACGAGATAA
Found at i:95902087 original size:64 final size:64
Alignment explanation
Indices: 95902007--95902191 Score: 187
Period size: 67 Copynumber: 2.9 Consensus size: 64
95901997 AGACATTATG
* * *
95902007 ATGTAGCTAGGTCGCATGGGTGAG-ACTATGTGTACACCATGTGGACAAGAGAGCTAGGGGATAT
1 ATGTAGCTAGGTCGCATGGGTG-GTACTATGTGTACACCATGTGGACAAGAGAGCTACGAGATAA
* * * * * *
95902071 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGG-TACTA-TG-TGTACACCATGTGGACAAGAGAGCTACGAGAT
95902136 AA
63 AA
* * * *
95902138 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGCT
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTGGACAAGAGAGCT
95902192 GAACTATATG
Statistics
Matches: 97, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
63 21 0.22
64 22 0.23
65 5 0.05
66 18 0.19
67 29 0.30
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTGGACAAGAGAGCTACGAGATAA
Found at i:95909048 original size:41 final size:40
Alignment explanation
Indices: 95909003--95909133 Score: 111
Period size: 42 Copynumber: 3.1 Consensus size: 40
95908993 GCTTTAAGCT
*
95909003 GGTGAATATTATCGAGCTCCGAGCCTAGCAGGCGTAATGCC
1 GGTGAATATTATCG-GCTCCGAGCCTAGCAGGCATAATGCC
* *** * * * *
95909044 GGTGAAATAATATCGGACTTAAAGGTCTAGCAAGCTTTAA-GCT
1 GGTG-AATATTATCGG-CTCCGA-GCCTAGCAGGC-ATAATGCC
95909087 GGTGAATATTATCGGGCTCCGAGCCTAGCAGGCATAATGCC
1 GGTGAATATTATC-GGCTCCGAGCCTAGCAGGCATAATGCC
*
95909128 GATGAA
1 GGTGAA
95909134 ATGATATTGA
Statistics
Matches: 67, Mismatches: 17, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
40 3 0.04
41 21 0.31
42 23 0.34
43 17 0.25
44 3 0.04
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (40 bp):
GGTGAATATTATCGGCTCCGAGCCTAGCAGGCATAATGCC
Found at i:95909060 original size:84 final size:84
Alignment explanation
Indices: 95908943--95909164 Score: 354
Period size: 84 Copynumber: 2.6 Consensus size: 84
95908933 GGCTTTGAGT
** *
95908943 CTAGCAGGCGTAATGCTAGTGAAATGATATCGGACTTAAAGGTCTGGCAAGCTTTAAGCTGGTGA
1 CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTGGTGA
95909008 ATATTATCGAGCTCCGAGC
66 ATATTATCGAGCTCCGAGC
*
95909027 CTAGCAGGCGTAATGCCGGTGAAATAATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTGGTGA
1 CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTGGTGA
*
95909092 ATATTATCGGGCTCCGAGC
66 ATATTATCGAGCTCCGAGC
* * * * *
95909111 CTAGCAGGCATAATGCCGATGAAATGATATTGAACTTAAAGGTCTAGCAGGCTT
1 CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTT
95909165 ATTGCCGGTG
Statistics
Matches: 127, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
84 127 1.00
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26
Consensus pattern (84 bp):
CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTGGTGA
ATATTATCGAGCTCCGAGC
Found at i:95909075 original size:43 final size:43
Alignment explanation
Indices: 95908941--95909175 Score: 151
Period size: 43 Copynumber: 5.6 Consensus size: 43
95908931 CGGGCTTTGA
* ** *
95908941 GTCTAGCAGGCGTAATGCTAGTGAAATGATATCGGACTTAAAG
1 GTCTAGCAGGCTTAATGCCGGTGAAATAATATCGGACTTAAAG
* * * * ***
95908984 GTCTGGCAAGCTTTAA-GCTGGTG-AATATTATC-GAGCTCCGA-
1 GTCTAGCAGGC-TTAATGCCGGTGAAATAATATCGGA-CTTAAAG
* *
95909025 GCCTAGCAGGCGTAATGCCGGTGAAATAATATCGGACTTAAAG
1 GTCTAGCAGGCTTAATGCCGGTGAAATAATATCGGACTTAAAG
* * * * ***
95909068 GTCTAGCAAGCTTTAA-GCTGGTG-AATATTATCGGGCTCCGA-
1 GTCTAGCAGGC-TTAATGCCGGTGAAATAATATCGGACTTAAAG
* * * * * *
95909109 GCCTAGCAGGCATAATGCCGATGAAATGATATTGAACTTAAAG
1 GTCTAGCAGGCTTAATGCCGGTGAAATAATATCGGACTTAAAG
*
95909152 GTCTAGCAGGCTTATTGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGA
95909176 TGAAACCAGG
Statistics
Matches: 138, Mismatches: 44, Indels: 20
0.68 0.22 0.10
Matches are distributed among these distances:
40 6 0.04
41 30 0.22
42 44 0.32
43 52 0.38
44 6 0.04
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (43 bp):
GTCTAGCAGGCTTAATGCCGGTGAAATAATATCGGACTTAAAG
Found at i:95919779 original size:25 final size:27
Alignment explanation
Indices: 95919750--95919802 Score: 76
Period size: 25 Copynumber: 2.0 Consensus size: 27
95919740 GGACTCAAAT
95919750 TTTCTC-AGTTTGGAATTT-TT-CGGGC
1 TTTCTCAAGTTT-GAATTTATTACGGGC
95919775 TTTCTCAAGTTTGAATTTATTACGGGC
1 TTTCTCAAGTTTGAATTTATTACGGGC
95919802 T
1 T
95919803 CAGGCTTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 12 0.48
26 7 0.28
27 6 0.24
ACGTcount: A:0.17, C:0.15, G:0.21, T:0.47
Consensus pattern (27 bp):
TTTCTCAAGTTTGAATTTATTACGGGC
Found at i:95920941 original size:258 final size:252
Alignment explanation
Indices: 95920587--95921239 Score: 716
Period size: 254 Copynumber: 2.6 Consensus size: 252
95920577 TATATTAACT
* * *
95920587 ATTATCATATATTATTG--TTTATTATACTGGTTGAAATATGCTT-TAAGTCCCAATACTTTTCC
1 ATTATTATATATTATTGTTTTTATTATACTGATTGAAATATG-TTCTAAGT-CC-ATA-TTTTCG
* * *
95920649 TACATTTGAAAGTTAATCCTCCTACTACATTATATAATATTATATCGTATCATATAGTATATAAT
62 TACATTTGAAAGTTACT-CTCCTTCTATATTATATAATATTATATC-TATCATATA-TATATAAT
* *
95920714 ATATAAATAGTTTATATA-CATATATATACATCAATTATTAAACATTATAATATCAAGTAATACT
124 ATATAAATAGTTTATATAGCATATATATACATCAATGATTAAACATTATAATATCAAGCAATACT
** * *
95920778 ATATCTTTTACTATGTTCTATAATATAATAATAGTTATATATAATAATAGTACATTACGTATTA
189 ATATCTTTTACTATAATCTATAATATAATAATAGTTATATATAATAATAGTAAATTACATATTA
*
95920842 ATTATTATATATTATTGTTTGTTATTATATTGATTGAAATATGTTCTAAGCTCCTATATTTTTCG
1 ATTATTATATATTATTGTTT-TTATTATACTGATTGAAATATGTTCTAAG-TCC-ATA-TTTTCG
** * * *
95920907 TACATTTGAAAGTTAGCTCTCCTTCTATATTATATAATGCTATATCTATCATAT-CATGTAGTAT
62 TACATTTGAAAGTTA-CTCTCCTTCTATATTATATAATATTATATCTATCATATATATATAATAT
** * * *
95920971 ATAACATA--TTA-ATAGTTTATATATGCATTAATGATTAAACATTATAATATCATGCAATACTA
126 ATAA-ATAGTTTATATAGCATATATATACATCAATGATTAAACATTATAATATCAAGCAATACTA
** * *
95921033 TATCTTTTTTTATAATCTATAATATAATAATAGTTATATATAATAGTAGTAAATTATATATTA
190 TATCTTTTACTATAATCTATAATATAATAATAGTTATATATAATAATAGTAAATTACATATTA
* * * * * *
95921096 ATTATTATATATT-GTGTTTCTTATTATACT-AGTTGAATTATGGTCTAAGTCCCTATCTTCGTG
1 ATTATTATATATTATTGTTT-TTATTATACTGA-TTGAAATATGTTCTAAGTCCATATTTTCGTA
* * *
95921159 CATTTGAAAGCTAACCCTCCTAT-TATACTATATAATATTATATCATATCATATAATATATAATA
64 CATTTGAAAG-TTACTCTCCT-TCTATATTATATAATATTATATC-TATCATAT-ATATATAATA
* *
95921223 TATTAATAGTTCATATA
125 TATAAATAGTTTATATA
95921240 TATGCACATT
Statistics
Matches: 334, Mismatches: 47, Indels: 34
0.80 0.11 0.08
Matches are distributed among these distances:
250 40 0.12
251 13 0.04
252 7 0.02
253 42 0.13
254 113 0.34
255 30 0.09
256 3 0.01
257 11 0.03
258 73 0.22
259 2 0.01
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.45
Consensus pattern (252 bp):
ATTATTATATATTATTGTTTTTATTATACTGATTGAAATATGTTCTAAGTCCATATTTTCGTACA
TTTGAAAGTTACTCTCCTTCTATATTATATAATATTATATCTATCATATATATATAATATATAAA
TAGTTTATATAGCATATATATACATCAATGATTAAACATTATAATATCAAGCAATACTATATCTT
TTACTATAATCTATAATATAATAATAGTTATATATAATAATAGTAAATTACATATTA
Found at i:95921410 original size:9 final size:9
Alignment explanation
Indices: 95921381--95921417 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
95921371 GAGTTTTTTG
95921381 AATTCGAAT
1 AATTCGAAT
*
95921390 AACTCGAAT
1 AATTCGAAT
95921399 AATTCGAAT
1 AATTCGAAT
*
95921408 AATTAGAAT
1 AATTCGAAT
95921417 A
1 A
95921418 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:95922349 original size:5 final size:5
Alignment explanation
Indices: 95922339--95922364 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
95922329 GAACAAATAT
95922339 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
95922365 ATTCCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:95927508 original size:18 final size:18
Alignment explanation
Indices: 95927487--95927521 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
95927477 AGTAGTACAT
95927487 TATATATTACTTATTATA
1 TATATATTACTTATTATA
*
95927505 TATATATTATTTATTAT
1 TATATATTACTTATTAT
95927522 TTGTAACGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (18 bp):
TATATATTACTTATTATA
Found at i:95928510 original size:63 final size:62
Alignment explanation
Indices: 95928443--95928621 Score: 193
Period size: 63 Copynumber: 2.8 Consensus size: 62
95928433 AAATACGAGC
*
95928443 CACACGGGCAAGAGACACAGGTGTGTGTTCAGGCCGTGTGACTCATTGTTTGTAATTAGAGAG
1 CACACGGGCAAGAGACACAGG-GTGTGTCCAGGCCGTGTGACTCATTGTTTGTAATTAGAGAG
* * * * *
95928506 CACACAGGCTAA-AGACACAGGCGTGTGTCCAGACCGTGTGACTCACTGTTTGTGATTAGAGGG
1 CACACGGGC-AAGAGACACAGG-GTGTGTCCAGGCCGTGTGACTCATTGTTTGTAATTAGAGAG
* * * *
95928569 TACACGGGTC-AGAGACAC-GGGCGTATACCTAGGCTGTGTGACTCATTGTTTGT
1 CACACGGG-CAAGAGACACAGGGTGTGT-CC-AGGCCGTGTGACTCATTGTTTGT
95928622 GATTTAGGAC
Statistics
Matches: 97, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
61 4 0.04
62 5 0.05
63 85 0.88
64 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (62 bp):
CACACGGGCAAGAGACACAGGGTGTGTCCAGGCCGTGTGACTCATTGTTTGTAATTAGAGAG
Found at i:95929799 original size:30 final size:28
Alignment explanation
Indices: 95929738--95929818 Score: 76
Period size: 30 Copynumber: 2.9 Consensus size: 28
95929728 ATCATATATT
* *
95929738 TTAT-TATAATTTATATTATAATAATAC
1 TTATATATTATTTATATTATAATAATAA
* *
95929765 TTATATATGTATTTATATTTTTAGTAATAA
1 TTATATAT-TATTTATA-TTATAATAATAA
*
95929795 TTATATATTATATTAT-TAATAATA
1 TTATATATTAT-TTATATTATAATA
95929819 TATTAGTAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
27 4 0.09
28 8 0.19
29 10 0.23
30 21 0.49
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.54
Consensus pattern (28 bp):
TTATATATTATTTATATTATAATAATAA
Found at i:95929819 original size:19 final size:18
Alignment explanation
Indices: 95929791--95929845 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
95929781 ATTTTTAGTA
*
95929791 ATAATTATATATTATATT
1 ATAATAATATATTATATT
*
95929809 ATTAATAATATATTAGTAAT
1 A-TAATAATATATTA-TATT
* *
95929829 ATACTAATTTATTATAT
1 ATAATAATATATTATAT
95929846 CAATTTAAGG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
18 3 0.10
19 23 0.77
20 4 0.13
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (18 bp):
ATAATAATATATTATATT
Found at i:95933566 original size:30 final size:30
Alignment explanation
Indices: 95933499--95933619 Score: 131
Period size: 30 Copynumber: 4.0 Consensus size: 30
95933489 AATCATGAAT
95933499 AAATTTTGATTTAATATTTAATT-TGATATAT-
1 AAATTTTGATTT-A-ATTTAATTAT-ATATATG
*
95933530 AAATTTTGATTTAATGTAATTATATATATG
1 AAATTTTGATTTAATTTAATTATATATATG
* * *
95933560 AAATTTTGATTTTATTTAAATATATACATG
1 AAATTTTGATTTAATTTAATTATATATATG
*
95933590 AAACTTTT-ATTTTAATTCAATTATATATAT
1 AAA-TTTTGA-TTTAATTTAATTATATATAT
95933620 TTAAAGATGT
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
29 13 0.17
30 32 0.42
31 32 0.42
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (30 bp):
AAATTTTGATTTAATTTAATTATATATATG
Found at i:95938752 original size:21 final size:21
Alignment explanation
Indices: 95938726--95938766 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
95938716 TTATTGTTGT
*
95938726 TGCACTCGCATTTGTAATTGC
1 TGCACTCGAATTTGTAATTGC
95938747 TGCACTCGAATTTGTAATTG
1 TGCACTCGAATTTGTAATTG
95938767 TTCCCATAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.39
Consensus pattern (21 bp):
TGCACTCGAATTTGTAATTGC
Found at i:95940217 original size:21 final size:20
Alignment explanation
Indices: 95940179--95940217 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
95940169 TAAAATTAGT
*
95940179 TATTATAGCATGAGATTAAA
1 TATTATAGAATGAGATTAAA
*
95940199 TATTATAGTAATGATATTA
1 TATTATAG-AATGAGATTA
95940218 CAATCAGTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.44, C:0.03, G:0.13, T:0.41
Consensus pattern (20 bp):
TATTATAGAATGAGATTAAA
Found at i:95940450 original size:19 final size:19
Alignment explanation
Indices: 95940409--95940451 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
95940399 ATGATATTTT
* *
95940409 TTATTATTGATGTAATTAT
1 TTATTATTGATGTAAATAA
* *
95940428 TTATTATTTATTTAAATAA
1 TTATTATTGATGTAAATAA
95940447 TTATT
1 TTATT
95940452 TTCTTTAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (19 bp):
TTATTATTGATGTAAATAA
Found at i:95954193 original size:17 final size:17
Alignment explanation
Indices: 95954171--95954204 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
95954161 ATAAAACAAG
95954171 ACCAAAATTTTGTCATA
1 ACCAAAATTTTGTCATA
95954188 ACCAAAATTTTGTCATA
1 ACCAAAATTTTGTCATA
95954205 TTCATTCATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.06, T:0.35
Consensus pattern (17 bp):
ACCAAAATTTTGTCATA
Found at i:95954442 original size:21 final size:21
Alignment explanation
Indices: 95954418--95954464 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
95954408 GTTGAAACTT
* *
95954418 TAGATTTTAAATGTTTAATGA
1 TAGATTATAAAGGTTTAATGA
*
95954439 TAGATTATGAAGGTTTAATGA
1 TAGATTATAAAGGTTTAATGA
95954460 TAGAT
1 TAGAT
95954465 ATACAAGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (21 bp):
TAGATTATAAAGGTTTAATGA
Found at i:95955185 original size:22 final size:22
Alignment explanation
Indices: 95955126--95955259 Score: 112
Period size: 22 Copynumber: 6.0 Consensus size: 22
95955116 TACTATTTTT
* * *
95955126 AGCTCATTGGAGCTTACCGTTTC
1 AGCTCAATAGAGCTTACTG-TTC
*
95955149 AGCTCGTATA-A-CTTACTGTTC
1 AGCTC-AATAGAGCTTACTGTTC
*
95955170 AGCTTAATAGAGCTTACTGTTC
1 AGCTCAATAGAGCTTACTGTTC
* *
95955192 AGCTC-GTATGAGCTTACTATTC
1 AGCTCAATA-GAGCTTACTGTTC
* *
95955214 AGCTCGATAGAGCTTACTGTTTT
1 AGCTCAATAGAGCTTACTG-TTC
* *
95955237 AGCTCATTAGAGCTTACTATTC
1 AGCTCAATAGAGCTTACTGTTC
95955259 A
1 A
95955260 TTAGCTCAGG
Statistics
Matches: 89, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
20 3 0.03
21 10 0.11
22 49 0.55
23 26 0.29
24 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.37
Consensus pattern (22 bp):
AGCTCAATAGAGCTTACTGTTC
Found at i:95955208 original size:44 final size:43
Alignment explanation
Indices: 95955100--95955234 Score: 137
Period size: 44 Copynumber: 3.0 Consensus size: 43
95955090 TACCGATATA
* * * *
95955100 TCAGCTCGTA-AGAGCTTACTATTTTTAGCTCATTGGAGCTTACCGTT
1 TCAGCTCGTATA-A-CTTACTA--TTCAGCTCAATAGAGCTTACTG-T
* *
95955147 TCAGCTCGTATAACTTACTGTTCAGCTTAATAGAGCTTACTGT
1 TCAGCTCGTATAACTTACTATTCAGCTCAATAGAGCTTACTGT
* *
95955190 TCAGCTCGTATGAGCTTACTATTCAGCTCGATAGAGCTTACTGT
1 TCAGCTCGTAT-AACTTACTATTCAGCTCAATAGAGCTTACTGT
95955234 T
1 T
95955235 TTAGCTCATT
Statistics
Matches: 76, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
43 12 0.16
44 46 0.61
46 6 0.08
47 11 0.14
48 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (43 bp):
TCAGCTCGTATAACTTACTATTCAGCTCAATAGAGCTTACTGT
Found at i:95955558 original size:105 final size:105
Alignment explanation
Indices: 95955376--95955587 Score: 424
Period size: 105 Copynumber: 2.0 Consensus size: 105
95955366 TTCAACGGGC
95955376 TTAAATACTGTTATTACAGATAAGTTATGGGTTATAAGTGTTATTGATGTTATATGTATGATATG
1 TTAAATACTGTTATTACAGATAAGTTATGGGTTATAAGTGTTATTGATGTTATATGTATGATATG
95955441 TGAGTTTGGAATGATACATAGTATTATATTAATAGATGGT
66 TGAGTTTGGAATGATACATAGTATTATATTAATAGATGGT
95955481 TTAAATACTGTTATTACAGATAAGTTATGGGTTATAAGTGTTATTGATGTTATATGTATGATATG
1 TTAAATACTGTTATTACAGATAAGTTATGGGTTATAAGTGTTATTGATGTTATATGTATGATATG
95955546 TGAGTTTGGAATGATACATAGTATTATATTAATAGATGGT
66 TGAGTTTGGAATGATACATAGTATTATATTAATAGATGGT
95955586 TT
1 TT
95955588 CATAACATGT
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 107 1.00
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.43
Consensus pattern (105 bp):
TTAAATACTGTTATTACAGATAAGTTATGGGTTATAAGTGTTATTGATGTTATATGTATGATATG
TGAGTTTGGAATGATACATAGTATTATATTAATAGATGGT
Found at i:95962125 original size:21 final size:21
Alignment explanation
Indices: 95962101--95962140 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
95962091 CTTGAGCTTT
*
95962101 TGAATGTTTAATGATAGATTA
1 TGAAGGTTTAATGATAGATTA
95962122 TGAAGGTTTAATGATAGAT
1 TGAAGGTTTAATGATAGAT
95962141 ATACAAGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.40
Consensus pattern (21 bp):
TGAAGGTTTAATGATAGATTA
Found at i:95962213 original size:15 final size:14
Alignment explanation
Indices: 95962188--95962231 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
95962178 TCAAATAGGG
*
95962188 ATTAAATTGTGAAA
1 ATTAAAATGTGAAA
95962202 ATGTAAAATGTGAAA
1 AT-TAAAATGTGAAA
*
95962217 GTTAAAAGTGTGAAA
1 ATTAAAA-TGTGAAA
95962232 TAATGAAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 7 0.27
15 19 0.73
ACGTcount: A:0.50, C:0.00, G:0.20, T:0.30
Consensus pattern (14 bp):
ATTAAAATGTGAAA
Found at i:95962886 original size:22 final size:23
Alignment explanation
Indices: 95962800--95962876 Score: 104
Period size: 23 Copynumber: 3.4 Consensus size: 23
95962790 AGTTTACTGT
*
95962800 TTTCAGCTC-ATTGGAGCTTACCG
1 TTTCAGCTCGA-TAGAGCTTACCG
*
95962823 TTTCAGCTCGATAGAGCTTACTG
1 TTTCAGCTCGATAGAGCTTACCG
95962846 -TTCAGCTCGATAGAGCTTACCG
1 TTTCAGCTCGATAGAGCTTACCG
*
95962868 TTTTAGCTC
1 TTTCAGCTC
95962877 ATTAGACTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
22 21 0.44
23 26 0.54
24 1 0.02
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (23 bp):
TTTCAGCTCGATAGAGCTTACCG
Found at i:95966328 original size:48 final size:48
Alignment explanation
Indices: 95966265--95966394 Score: 188
Period size: 48 Copynumber: 2.7 Consensus size: 48
95966255 ACATTACGGG
**
95966265 AGCCAGTGTAAGACATGTCTGGGACATGCATTGACCTCGAGATATACA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGATATACA
*
95966313 AGCCAGTGAAAGACATGTCTGGGACATGCATCAACCTCGAGATATACA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGATATACA
** * *
95966361 AGCTGGTGTAAGACCTATCTGGGACATGGCATCA
1 AGCCAGTGTAAGACATGTCTGGGACAT-GCATCA
95966395 GCTTGTTGTG
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
48 67 0.92
49 6 0.08
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (48 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGATATACA
Found at i:95966473 original size:49 final size:49
Alignment explanation
Indices: 95966264--95966486 Score: 149
Period size: 48 Copynumber: 4.7 Consensus size: 49
95966254 CACATTACGG
* ** ** *
95966264 GAGCCAGTGTAAGACATGTCTGGGACAT-GCATTGACCTCGAGATATAC
1 GAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACAGCGAGAGATAC
* * * ** *
95966312 AAGCCAGTGAAAGACATGTCTGGGACAT-GCATCAACCTCGAGATATAC
1 GAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACAGCGAGAGATAC
* ** * ** *
95966360 AAGCTGGTGTAAGACCTATCTGGGACATGGCAT---CAGCTTGTTG-T--
1 GAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACAGCGAG-AGATAC
* * *
95966404 GCGTCAGTGTAAGACCTGTCTGGGACATGGCATCAACAGCGATAGATGA-
1 GAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACAGCGAGAGAT-AC
* *
95966453 GAGCCAGTGTAAGACCTGTCTAGGACATGACATC
1 GAGCCAGTGTAAGACCTGTCTGGGACATGGCATC
95966487 GACTTTGATG
Statistics
Matches: 138, Mismatches: 29, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
44 27 0.20
46 5 0.04
47 5 0.04
48 67 0.49
49 34 0.25
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.22
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACAGCGAGAGATAC
Found at i:95969155 original size:37 final size:37
Alignment explanation
Indices: 95969105--95969251 Score: 249
Period size: 37 Copynumber: 4.0 Consensus size: 37
95969095 CTTTAGCTCA
* *
95969105 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
95969142 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
95969179 GACATAATCTTCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
95969216 GACATAATCTCCACACGTAGTCATCGGGTCTTACCC
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
95969252 CAATATATTT
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:95969519 original size:47 final size:47
Alignment explanation
Indices: 95969458--95969628 Score: 261
Period size: 47 Copynumber: 3.6 Consensus size: 47
95969448 TACATATATT
* * * *
95969458 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
95969505 TCACATTGGCCATTCGTCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
95969552 TCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
95969599 TCACATTGGCCATTCAGCCTTATCACATAT
1 TCACATTGGCCATTCGGCCTTATCACATAT
95969629 TCACATCACA
Statistics
Matches: 111, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 111 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:95980988 original size:47 final size:47
Alignment explanation
Indices: 95980915--95981143 Score: 200
Period size: 47 Copynumber: 4.9 Consensus size: 47
95980905 AGGGTAAGGT
* *
95980915 GCCGATGTCATGTCCTAGACACGGTCTTACATTGGCTCAT-ATCTC-AA
1 GCCGATG-CATGTCCTAGACATGGTCTTACACTGGCT-ATCATCTCGAA
* * *
95980962 GTCGATGCCATGTCTTAGACATGGTCTTACACTGGCTATCATCTCGTA
1 GCCGATG-CATGTCCTAGACATGGTCTTACACTGGCTATCATCTCGAA
* * * *
95981010 GCCGATGCATGTCCCAGACAT-GTCTTACACTGGCTTAT-GTCTTGAG
1 GCCGATGCATGTCCTAGACATGGTCTTACACTGGC-TATCATCTCGAA
* * ** *
95981056 GCCAATGCATGTCCTAGACAT-GTCTTACACTAGCCCTCGTCTC-AA
1 GCCGATGCATGTCCTAGACATGGTCTTACACTGGCTATCATCTCGAA
* * * *
95981101 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
1 -GCCGATG-CATGTCCTAGACATGGTCTTACACTGGCTATCAT
95981144 AATGTGGCCG
Statistics
Matches: 152, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
45 2 0.01
46 61 0.40
47 65 0.43
48 24 0.16
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (47 bp):
GCCGATGCATGTCCTAGACATGGTCTTACACTGGCTATCATCTCGAA
Found at i:95981064 original size:46 final size:45
Alignment explanation
Indices: 95980923--95981134 Score: 176
Period size: 46 Copynumber: 4.6 Consensus size: 45
95980913 GTGCCGATGT
* * * * * * *
95980923 CATGTCCTAGACACGGTCTTACATTGGCTCATATCTCAAGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCT-ATGTCTCGAGCCAATG
** * *
95980969 CCATGTCTTAGACATGGTCTTACACTGGCTATCATCTCGTAGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTAT-GTCTCG-AGCCAATG
*
95981017 CATGTCCCAGACAT-GTCTTACACTGGCTTATGTCTTGAGGCCAATG
1 CATGTCCCAGACATGGTCTTACACTGGC-TATGTCTCGA-GCCAATG
* * ** *
95981063 CATGTCCTAGACAT-GTCTTACACTAGCCCTCGTCTCAATGCCAATG
1 CATGTCCCAGACATGGTCTTACACTGGCTAT-GTCTCGA-GCCAATG
95981109 CCATGTCCCAGACATGGTCTTACACT
1 -CATGTCCCAGACATGGTCTTACACT
95981135 AGCTCTCATA
Statistics
Matches: 140, Mismatches: 18, Indels: 13
0.82 0.11 0.08
Matches are distributed among these distances:
45 2 0.01
46 62 0.44
47 59 0.42
48 17 0.12
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.30
Consensus pattern (45 bp):
CATGTCCCAGACATGGTCTTACACTGGCTATGTCTCGAGCCAATG
Found at i:95982476 original size:40 final size:40
Alignment explanation
Indices: 95982429--95982522 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
95982419 CTTGGTATTG
95982429 CACACTTACTGCCT-CATATAGCCGAAGCTA-TTCCAATTCA
1 CACACTTACTG-CTGCATATAGCCGAAGCTATTTCCAA-TCA
* **
95982469 CACACTTAGTGCTGTTTATAGCCGAAGCTATTTCCAATCA
1 CACACTTACTGCTGCATATAGCCGAAGCTATTTCCAATCA
*
95982509 CACACTTAGTGCTG
1 CACACTTACTGCTG
95982523 AACATAGTCG
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
39 2 0.04
40 41 0.84
41 6 0.12
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.30
Consensus pattern (40 bp):
CACACTTACTGCTGCATATAGCCGAAGCTATTTCCAATCA
Found at i:95989863 original size:40 final size:40
Alignment explanation
Indices: 95989813--95989907 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
95989803 ATCTCGATAA
* * *
95989813 CGCACGCTTAGTGCCTCA-TATAGCCGAAGCTATTCCAAGT
1 CGCACACTTAGTGCCT-ATTATAGCCGAACCTATTCCAAAT
*
95989853 CGCACACTTAGTG-CTATTTATAGCCGAACCTATTTCAAAT
1 CGCACACTTAGTGCCTA-TTATAGCCGAACCTATTCCAAAT
95989893 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
95989908 GAACATAGTC
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 44 0.92
41 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.27
Consensus pattern (40 bp):
CGCACACTTAGTGCCTATTATAGCCGAACCTATTCCAAAT
Found at i:96006513 original size:42 final size:42
Alignment explanation
Indices: 96006466--96006609 Score: 132
Period size: 42 Copynumber: 3.4 Consensus size: 42
96006456 ATCTCGTACA
* *
96006466 ATGCCAATGTCCCAGACGTCGTCTTACATGTAATCAATATTG
1 ATGCCAATGTCCCAGACGTAGTCTTACACGTAATCAATATTG
* * *
96006508 ATGCCACTGTCCCAGACAG-AGTCTTACACGAAATC-ATATATC
1 ATGCCAATGTCCCAGAC-GTAGTCTTACACGTAATCAATAT-TG
* * * *
96006550 ATGCCAATGTCCCAAACATGGTCTTACACGTAAATTACAA-ATCG
1 ATGCCAATGTCCCAGACGTAGTCTTACACGT-AA-T-CAATATTG
*
96006594 ATGCCAACGTCCCAGA
1 ATGCCAATGTCCCAGA
96006610 TGTGATCTTA
Statistics
Matches: 81, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
41 4 0.05
42 55 0.68
43 3 0.04
44 15 0.19
45 3 0.04
46 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTAGTCTTACACGTAATCAATATTG
Found at i:96009628 original size:13 final size:13
Alignment explanation
Indices: 96009605--96009644 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
96009595 GGAGTAATCG
*
96009605 CACATGGGCGTGT
1 CACACGGGCGTGT
*
96009618 CATACGGGCGTGT
1 CACACGGGCGTGT
96009631 CACACGGGCGTGT
1 CACACGGGCGTGT
96009644 C
1 C
96009645 CCTGCCGATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.15, C:0.28, G:0.38, T:0.20
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:96018821 original size:13 final size:13
Alignment explanation
Indices: 96018803--96018829 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
96018793 GGAGTAATCG
96018803 CACACGGGCGTGT
1 CACACGGGCGTGT
96018816 CACACGGGCGTGT
1 CACACGGGCGTGT
96018829 C
1 C
96018830 CCTGCTGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:96026596 original size:18 final size:20
Alignment explanation
Indices: 96026560--96026606 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
96026550 AGTTGTAAAT
96026560 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
96026580 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
96026599 ATGATATA
1 AT-ATATA
96026607 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:96027036 original size:50 final size:50
Alignment explanation
Indices: 96026961--96027349 Score: 349
Period size: 50 Copynumber: 7.7 Consensus size: 50
96026951 GTGAGTCACG
* *
96026961 TGTGTAGTACTAAGTGTAGGCTACTACGTGTGCCAGATTGATAGGTCTCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCTCA
* * * **
96027011 TGTGTAGTACTAAGTGCAGGTTACTATGTGTACCCG-TT-A-ACTTCAATCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTC--TCA
* ** * * * *
96027060 CGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATTAGATGGTTAAGTCAT-G
1 --TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTC-TCA
* *
96027112 TGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCTCA
* * * * * * * * *
96027162 TGTGTAGTACTAAGTGAAGGATACTATGCGTACCCG-TTAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGTCTCA
* * * *
96027213 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTC-CA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCTCA
**
96027262 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGAA
1 -TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCTCA
* * **
96027313 TGTGTAGTACGAAGTGCAGGCTGCTACGCATACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
96027350 GAGGTTCGGT
Statistics
Matches: 268, Mismatches: 58, Indels: 26
0.76 0.16 0.07
Matches are distributed among these distances:
47 3 0.01
48 1 0.00
49 10 0.04
50 180 0.67
51 67 0.25
52 2 0.01
53 2 0.01
54 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCTCA
Found at i:96027137 original size:101 final size:101
Alignment explanation
Indices: 96026956--96027340 Score: 300
Period size: 101 Copynumber: 3.8 Consensus size: 101
96026946 TTGTTGTGAG
* * *
96026956 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTGCCAGATTGATAGGTCTCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGATAAGTCTCATGTGTAGTAC
* * *
96027021 TAAGTGCAGGTTACTATGTGTACCCGTTAACTTCAA
66 TAAGTACAGGCTACTACGTGTACCCGTTAACTTCAA
** * *
96027057 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATTAGATGGTTAAGTCAT-GTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGATAAGTC-TCATGTGTAGTA
* * *
96027121 CTAAGTACAGGCTACTACGTGTACCAGATTGA--T-AGG
65 CTAAGTACAGGCTACTACGTGTACCCG-TTAACTTCA-A
* * * * * * * ** ** *
96027157 TCGCATGTGTAGTACTAAGTGAAGGATACTATGCGTACCCG-TTAACTTCGATCACATGTGTAGT
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGA-TAAG-TCTCATGTGTAGT
* * * * **
96027221 ACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTT-AA
64 ACTAAGTACAGGCTACTACGTGTACCCGTTAACTTCAA
* * * **
96027257 GTC-CAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGAATGTGTAGT
1 -TCAC-GTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGATAAGTCTCATGTGTAGT
* * *
96027321 ACGAAGTGCAGGCTGCTACG
64 ACTAAGTACAGGCTACTACG
96027341 CATACCAGAG
Statistics
Matches: 226, Mismatches: 47, Indels: 23
0.76 0.16 0.08
Matches are distributed among these distances:
99 2 0.01
100 66 0.29
101 151 0.67
102 7 0.03
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGATAAGTCTCATGTGTAGTAC
TAAGTACAGGCTACTACGTGTACCCGTTAACTTCAA
Found at i:96027228 original size:151 final size:150
Alignment explanation
Indices: 96026954--96027328 Score: 606
Period size: 151 Copynumber: 2.5 Consensus size: 150
96026944 ATTTGTTGTG
* * *
96026954 AGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTGCCAGATTGATAGGTCTCATGTGTAGT
1 AGTCA-GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * * * *
96027019 ACTAAGTGCAGGTTACTATGTGTACCCGTTAACTTCAATCACGTGTGTAGTACTAAGTGTAGGCT
65 ACTAAGTGAAGGATACTATGCGTACCCGTTAACTTCAATCACATGTGTAGTACTAAGTGCAGGCT
*
96027084 ACTACGTGTATTAGATGGTTA
130 ACTACGTGTATCAGATGGTTA
*
96027105 AGTCATGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCA-GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
96027170 ACTAAGTGAAGGATACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGGCT
65 ACTAAGTGAAGGATACTATGCGTACCCGTTAACTTCAATCACATGTGTAGTACTAAGTGCAGGCT
96027235 ACTACGTGTATCAGATGGTTA
130 ACTACGTGTATCAGATGGTTA
*
96027256 AGTCCAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGAATGTGTAGT
1 AGT-CAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
96027321 ACGAAGTG
65 ACTAAGTG
96027329 CAGGCTGCTA
Statistics
Matches: 208, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
151 206 0.99
152 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (150 bp):
AGTCAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
CTAAGTGAAGGATACTATGCGTACCCGTTAACTTCAATCACATGTGTAGTACTAAGTGCAGGCTA
CTACGTGTATCAGATGGTTA
Found at i:96027549 original size:16 final size:16
Alignment explanation
Indices: 96027528--96027559 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
96027518 AGAATGGAGT
96027528 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
96027544 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
96027560 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:96030250 original size:53 final size:53
Alignment explanation
Indices: 96030067--96030320 Score: 259
Period size: 55 Copynumber: 4.8 Consensus size: 53
96030057 ATTAGGGTTT
* *
96030067 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCATAAGGC
* * * * * *
96030122 AAGGAAATCGTGTAAGACCATGCCAAGACATGGAATTGATAAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGG-C
* * *
96030178 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* *
96030230 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * * * *
96030278 AAGGATACCACGTACGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
96030321 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 26, Indels: 15
0.80 0.12 0.07
Matches are distributed among these distances:
48 39 0.23
51 2 0.01
52 4 0.02
53 45 0.27
54 8 0.05
55 67 0.40
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:96030411 original size:23 final size:24
Alignment explanation
Indices: 96030385--96030429 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
96030375 AAGGTAAGGT
*
96030385 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
96030408 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
96030430 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:96033947 original size:93 final size:93
Alignment explanation
Indices: 96033834--96034004 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
96033824 ACCCATAAGT
***
96033834 GAACTCAGACTCAACTCAACGAGCTCGGGTGTTCAAATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCAAATCCATAAGTGAACTCAGACTCAACTCAA
96033899 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * ** * *
96033927 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTTAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCAAATCCATAAGTGAACTCAGACTCAACTCAA
*
96033992 CGAGTTCGGATGC
66 CGAGCTCGGATGC
96034005 TCAACCATCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCAAATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:96033994 original size:46 final size:44
Alignment explanation
Indices: 96033826--96034001 Score: 156
Period size: 46 Copynumber: 3.8 Consensus size: 44
96033816 TGTAACCCAC
** *
96033826 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGTGTTCAAAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTC-GGAATTC-CAT
*
96033872 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG-ATGCCTAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGAATTCC-A--T
* *** * *
96033918 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCGGA-ATTC-CAT
* * *
96033965 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
96034002 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
44 3 0.03
45 2 0.02
46 67 0.62
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGAATTCCAT
Found at i:96040752 original size:53 final size:53
Alignment explanation
Indices: 96040569--96040822 Score: 259
Period size: 55 Copynumber: 4.8 Consensus size: 53
96040559 ATTAGGGTTT
* * *
96040569 AAGGATACCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-GTTCATAAGGC
* * * * *
96040624 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGG-C
* * * *
96040680 AATG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* *
96040732 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * * *
96040780 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
96040823 GTACTCGGGT
Statistics
Matches: 169, Mismatches: 26, Indels: 15
0.80 0.12 0.07
Matches are distributed among these distances:
48 40 0.24
51 2 0.01
52 3 0.02
53 45 0.27
54 8 0.05
55 68 0.40
56 3 0.02
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:96040775 original size:108 final size:110
Alignment explanation
Indices: 96040576--96040776 Score: 325
Period size: 108 Copynumber: 1.8 Consensus size: 110
96040566 TTTAAGGATA
* *
96040576 CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTATAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGA
*
96040641 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAAAATGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAATGTC
* * *
96040686 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-GTTCATAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGA
*
96040749 CCATGTCAAGACATGGCAATGGTAAGTT
66 CCATGTCAAGACATGGCAATGATAAGTT
96040777 CAAAAGGATA
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
108 51 0.61
109 7 0.08
110 26 0.31
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAATGTC
Found at i:96040913 original size:23 final size:24
Alignment explanation
Indices: 96040887--96040931 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
96040877 AAGGTAAGGT
*
96040887 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
96040910 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
96040932 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:96044957 original size:28 final size:29
Alignment explanation
Indices: 96044889--96045017 Score: 104
Period size: 29 Copynumber: 4.5 Consensus size: 29
96044879 CATGAGATTG
* * *
96044889 GCACTAAGTGTGCGGGTTTAAATTGTTCA
1 GCACTAAGTGTGCGAGTTTAAATTATTAA
*
96044918 GCACTAAGTGTGCGAGTTT-GATTA-TATA
1 GCACTAAGTGTGCGAGTTTAAATTATTA-A
* * * *
96044946 GCACTAAGTGTGTGAGTTTAAAGTA-CATG
1 GCACTAAGTGTGCGAGTTTAAATTATTA-A
* * *
96044975 GCACTAAGTGTGCGCGGTT-GATTATTAA
1 GCACTAAGTGTGCGAGTTTAAATTATTAA
*
96045003 GCACTATGTGTGCGA
1 GCACTAAGTGTGCGA
96045018 ACCCCATATA
Statistics
Matches: 79, Mismatches: 18, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
27 1 0.01
28 38 0.48
29 40 0.51
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTAAATTATTAA
Found at i:96045236 original size:174 final size:174
Alignment explanation
Indices: 96044946--96045273 Score: 584
Period size: 174 Copynumber: 1.9 Consensus size: 174
96044936 TGATTATATA
* * * *
96044946 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTACTAAACACTATG
* *
96045011 TGTGCGAACCCCATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
96045076 TTTTGGACAGCGAAAAAGGTAAGTGTGCGAACTTGAAATGTATG
131 TTTTGGACAGCGAAAAAGGTAAGTGTGCGAACTTGAAATGTATG
*
96045120 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTACTAAACACTATG
96045185 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
*
96045250 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGAAAAAGGTAAGT
96045274 ACCTTGGGTT
Statistics
Matches: 146, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 146 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGAAAAAGGTAAGTGTGCGAACTTGAAATGTATG
Found at i:96047353 original size:46 final size:46
Alignment explanation
Indices: 96047229--96047355 Score: 119
Period size: 46 Copynumber: 2.7 Consensus size: 46
96047219 GGGTTATTAT
* *
96047229 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACAA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATCGAGACAA
* * * ** * * **
96047277 GAGCTACTGTAAGACATGTTTTAGATATGCATCGACCTCGAGACGT
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACATCGAGACAA
* *
96047323 TATCCAGTGTAAGACATGTCTGGGACATGCATC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC
96047356 AGCTACAAGA
Statistics
Matches: 60, Mismatches: 19, Indels: 2
0.74 0.23 0.02
Matches are distributed among these distances:
46 38 0.63
47 10 0.17
48 12 0.20
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACATCGAGACAA
Found at i:96058098 original size:47 final size:47
Alignment explanation
Indices: 96058037--96058193 Score: 153
Period size: 47 Copynumber: 3.4 Consensus size: 47
96058027 GAATGCCCGT
96058037 ACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGA
1 ACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGA
* * * * *
96058084 ACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCCGA
1 ACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCTGA
* * * *
96058130 ACTCGTTGAGTTGAGTCCTAGTTAGTGAAATGTAAGTAGGCATCTGA
1 ACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGA
*
96058177 ACTTGTTGAGTTGAGTC
1 ACTCGTTGAGTTGAGTC
96058194 TAAGTTCACT
Statistics
Matches: 86, Mismatches: 15, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 3 0.03
46 25 0.29
47 43 0.50
48 3 0.03
50 4 0.05
51 3 0.03
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.32
Consensus pattern (47 bp):
ACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGA
Found at i:96058141 original size:93 final size:93
Alignment explanation
Indices: 96057982--96058247 Score: 379
Period size: 93 Copynumber: 2.9 Consensus size: 93
96057972 AGGATATTTG
* * * * * *
96057982 GGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCTCTTATGGATGCGAATGCCCGTACTCGTTGAG
1 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
96058047 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
*
96058075 GGCATCTGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
* * *
96058140 TTGAGTCCTAGTTAGTGAAATGTAAGTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* ** *
96058168 GGCATCTGAACTTGTTGAGTTGAGTCTAAGTTCACTTATGGATGCGAACGTCCGAGCTCGTTGAG
1 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
* *
96058233 TCGAGTCTGAGTTCG
66 TTGAGTCCGAGTTCG
96058248 CTTATGGGCG
Statistics
Matches: 153, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 153 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (93 bp):
GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:96058144 original size:46 final size:46
Alignment explanation
Indices: 96057986--96058254 Score: 190
Period size: 46 Copynumber: 5.8 Consensus size: 46
96057976 TATTTGGGCA
* * *
96057986 TCCGAACTCGTTGAGTTGAGTTCGAGTTCTCTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * *
96058032 CCCGTACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* *
96058077 CATCTGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * * * *
96058125 TCCGAACTCGTTGAGTTGAGTCCTAGTT-AGTGAAATGTAAG-TAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACG
* * **
96058172 TCTGAACTTGTTGAGTTGAGTCTAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
96058218 TCCGAGCTCGTTGAGTCGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
96058255 GCGGGTTAGA
Statistics
Matches: 168, Mismatches: 41, Indels: 28
0.71 0.17 0.12
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
45 5 0.03
46 89 0.53
47 56 0.33
48 5 0.03
50 4 0.02
51 3 0.02
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:96066205 original size:43 final size:43
Alignment explanation
Indices: 96066144--96066225 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
96066134 AAATTTGATC
96066144 TGAGATATCGTGTAAGACCGTGTCTGGGACACAGGCTTCGATT
1 TGAGATATCGTGTAAGACCGTGTCTGGGACACAGGCTTCGATT
* * * *
96066187 TGAGATTTCGTGTAAGACCTTGTTTGGGACAGAGGCTTC
1 TGAGATATCGTGTAAGACCGTGTCTGGGACACAGGCTTC
96066226 AACATCGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (43 bp):
TGAGATATCGTGTAAGACCGTGTCTGGGACACAGGCTTCGATT
Found at i:96078763 original size:46 final size:46
Alignment explanation
Indices: 96078569--96078788 Score: 176
Period size: 46 Copynumber: 4.7 Consensus size: 46
96078559 TTTGTAAGCT
** * * ** *
96078569 AGTGTAAGACATGTCTAAGACATGCATCAGCCACATCATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAACTACAAGACGAGAGCC
** *
96078615 AGTGTAAGACCATGTCTGGGACATGGCATCAAC-ATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAACTA-CAAGACGAGAGCC
* ** *
96078663 AGTGTAAGACATGTCTGAGACATGCATCGGTCT-CGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-AACTACAAGACG-AGAGCC
* * * *
96078709 AGTATAAGACATGTCTGGGACATGCATCAACTACAAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAACTACAAGACGAGAGCC
* *
96078755 AGTGTAAGACCATATCTGGGACACGACATCAACT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCAACT
96078789 TGAGATGTGA
Statistics
Matches: 140, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
45 3 0.02
46 65 0.46
47 41 0.29
48 31 0.22
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAACTACAAGACGAGAGCC
Found at i:96078816 original size:140 final size:141
Alignment explanation
Indices: 96078562--96078832 Score: 332
Period size: 140 Copynumber: 1.9 Consensus size: 141
96078552 TCATTTGTTT
* * * *
96078562 GTAAGCTAGTGTAAGACATGTCTAAGACATGCATCAGCCACATCATGAGAGCCAGTGTAAGACCA
1 GTAAGCCAGTATAAGACATGTCTAAGACATGCATCAACCACAACATGAGAGCCAGTGTAAGACCA
* * * * * * *
96078627 TGTCTGGGACATGGCATCAACATTGAGACGAGAGCTAGTGTAAGACATGTCT-GAGACAT-GCAT
66 TATCTGGGACACGACATCAACATTGAGACGAGAGCCAATATAAAACATGTCTAG-GACATGGCAT
96078690 CGGTCTCGAGAC
130 CGGTCTCGAGAC
** * * * *
96078702 GTAAGCCAGTATAAGACATGTCTGGGACATGCATCAACTACAAGATGATAGTCAGTGTAAGACCA
1 GTAAGCCAGTATAAGACATGTCTAAGACATGCATCAACCACAACATGAGAGCCAGTGTAAGACCA
* *
96078767 TATCTGGGACACGACATCAAC-TTGAGATGTGAGCCAATATAAAACCATGTCTAGGACATGGCAT
66 TATCTGGGACACGACATCAACATTGAGACGAGAGCCAATATAAAA-CATGTCTAGGACATGGCAT
96078831 CG
130 CG
96078833 ACACTTTACC
Statistics
Matches: 109, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
139 17 0.16
140 85 0.78
141 7 0.06
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (141 bp):
GTAAGCCAGTATAAGACATGTCTAAGACATGCATCAACCACAACATGAGAGCCAGTGTAAGACCA
TATCTGGGACACGACATCAACATTGAGACGAGAGCCAATATAAAACATGTCTAGGACATGGCATC
GGTCTCGAGAC
Found at i:96082402 original size:46 final size:48
Alignment explanation
Indices: 96082297--96082609 Score: 193
Period size: 46 Copynumber: 6.6 Consensus size: 48
96082287 GATTATTATC
* * * *
96082297 AGCCAATGTAAGACCATGTCTGGGACATGGCATTAGCATTGAGA-GGAG
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATTAGCCTCGAGATGCAG
* * *
96082345 AGCTAGTGTAAGA-CATGTTTGGGACATGCATTGGCCTCGAGATGCA-
1 AGCCAGTGTAAGACCATGTCTGGGACATGCATTAGCCTCGAGATGCAG
* * *
96082391 AGCCAGTGTAAGA-CATGTCTGGGACATCCA-TCGACTACGAGAT---G
1 AGCCAGTGTAAGACCATGTCTGGGACATGCATTAGCCT-CGAGATGCAG
* * * * * * *
96082435 TGTCAATGTAAGACCATGTTTGGGACATGGCATTAGCAC-AGATATGTGAG
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATTAGC-CTCGAGATG-CAG
* * ** *
96082485 AGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTC-A-ATGACGAT
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATTAGCCTCGAGATG-C-AG
* * * * * *
96082534 AGTCAGTGTAAGACCATGTTTGGGACATGACA-TCGACTTGAGATAC-G
1 AGCCAGTGTAAGACCATGTCTGGGACATG-CATTAGCCTCGAGATGCAG
*
96082581 AACCAGTGTAAGACCATGTCTGGGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATG
96082610 GCATCGGCAT
Statistics
Matches: 203, Mismatches: 46, Indels: 33
0.72 0.16 0.12
Matches are distributed among these distances:
44 10 0.05
45 17 0.08
46 51 0.25
47 43 0.21
48 19 0.09
49 31 0.15
50 32 0.16
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGCATTAGCCTCGAGATGCAG
Found at i:96082553 original size:99 final size:96
Alignment explanation
Indices: 96082303--96082617 Score: 249
Period size: 96 Copynumber: 3.3 Consensus size: 96
96082293 TATCAGCCAA
** * ** * * *
96082303 TGTAAGACCATGTCTGGGACATGGCATTAGCATTGA-GAGGAGAG-CTAGTGTAAGA-CATGTTT
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATGACGATAGTC-AATGTAAGACCATGTTT
* * * *
96082365 GGGACATG-CATTGGCCTCGAGATGC-AAGCCAG
65 GGGACATGACA-TAGACTAGAGATACGAA-CCAG
* * * *
96082397 TGTAAGA-CATGTCTGGGACAT-CCATC-GACT--ACGA-GATGTGTCAATGTAAGACCATGTTT
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATGACGAT-AGTCAATGTAAGACCATGTTT
* * ** *
96082456 GGGACATGGCATTAGCAC-AGATATGTGAGAGCTAG
65 GGGACATGACA-TAG-ACTAGAGATACGA-A-CCAG
* *
96082491 TGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATGACGATAGTCAGTGTAAGACCATGTTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATGACGATAGTCAATGTAAGACCATGTTTG
* *
96082556 GGACATGACATCGACTTGAGATACGAACCAG
66 GGACATGACATAGACTAGAGATACGAACCAG
96082587 TGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGTAAGACCATGTCTGGGACATGGCATCGGC
96082618 ATTCTACCCC
Statistics
Matches: 179, Mismatches: 27, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
89 3 0.02
90 11 0.06
91 18 0.10
92 13 0.07
93 16 0.09
94 19 0.11
95 14 0.08
96 36 0.20
97 6 0.03
98 8 0.04
99 32 0.18
100 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATGACGATAGTCAATGTAAGACCATGTTTG
GGACATGACATAGACTAGAGATACGAACCAG
Found at i:96082605 original size:47 final size:49
Alignment explanation
Indices: 96082297--96082615 Score: 170
Period size: 47 Copynumber: 6.7 Consensus size: 49
96082287 GATTATTATC
* * * ** * *
96082297 AGCCAATGTAAGACCATGTCTGGGACATGGCAT-TAGCATTGA-GAGGAG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCTCAATGACGAT
* * * *
96082345 AGCTAGTGTAAGA-CATGTTTGGGACAT-GCATTGGCCTCGAGATG-C-A-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC-A-ATGACGAT
* *
96082391 AGCCAGTGTAAGA-CATGTCTGGGACAT-CCATCGA-CT--ACGA-GAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCAATGACGAT
* * * * * * * * *
96082434 GTGTCAATGTAAGACCATGTTTGGGACATGGCAT-TAGCACAGAT-ATGTGAG
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCA-ATGA--CGAT
* * *
96082485 AGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATGACGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCAATGACGAT
* * * * *
96082534 AGTCAGTGTAAGACCATGTTTGGGACATGACATCGACTTGAGAT-ACGA-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCA-ATGACGAT
96082582 A-CCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
96082616 GCATTCTACC
Statistics
Matches: 204, Mismatches: 47, Indels: 41
0.70 0.16 0.14
Matches are distributed among these distances:
41 2 0.01
42 1 0.00
44 10 0.05
45 16 0.08
46 39 0.19
47 44 0.22
48 14 0.07
49 41 0.20
50 31 0.15
51 6 0.03
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (49 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCAATGACGAT
Found at i:96083771 original size:21 final size:22
Alignment explanation
Indices: 96083732--96083772 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
96083722 TCGAATTGGT
*
96083732 CACACGGGCGTGTTGCCCCTTC
1 CACACGGGCGCGTTGCCCCTTC
96083754 CACACGGGCGCG-TGCCCCT
1 CACACGGGCGCGTTGCCCCT
96083773 GTGTCTAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.44, G:0.29, T:0.17
Consensus pattern (22 bp):
CACACGGGCGCGTTGCCCCTTC
Found at i:96099176 original size:14 final size:15
Alignment explanation
Indices: 96099157--96099185 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
96099147 GGTGGAAAAG
96099157 TATTTTTGAA-GTGT
1 TATTTTTGAATGTGT
96099171 TATTTTTGAATGTGT
1 TATTTTTGAATGTGT
96099186 GGTCTACTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.59
Consensus pattern (15 bp):
TATTTTTGAATGTGT
Found at i:96100864 original size:36 final size:36
Alignment explanation
Indices: 96100817--96100886 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
96100807 ATGTTGAGTC
96100817 TATTAGGGTCGTCAATAAGAGTGAATAAACGGTTGT
1 TATTAGGGTCGTCAATAAGAGTGAATAAACGGTTGT
*
96100853 TATTAGGGTCGTCAATAAGAGTGAATAAATGGTT
1 TATTAGGGTCGTCAATAAGAGTGAATAAACGGTT
96100887 TAAGGATATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (36 bp):
TATTAGGGTCGTCAATAAGAGTGAATAAACGGTTGT
Found at i:96109716 original size:39 final size:40
Alignment explanation
Indices: 96109616--96109840 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
96109606 TTGAATGATG
* * * *
96109616 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
96109656 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
96109696 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
96109735 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
96109775 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
96109816 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
96109841 AATGAGGAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 118 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:96112686 original size:47 final size:47
Alignment explanation
Indices: 96112608--96112846 Score: 370
Period size: 47 Copynumber: 5.1 Consensus size: 47
96112598 CCCTTCGGGA
* * * * * * *
96112608 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
96112655 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
96112702 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96112749 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96112796 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
96112843 CTTA
1 CTTA
96112847 CTATCATTTC
Statistics
Matches: 176, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 176 1.00
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:96113049 original size:47 final size:47
Alignment explanation
Indices: 96113013--96113437 Score: 733
Period size: 47 Copynumber: 9.0 Consensus size: 47
96113003 CTCGGCCCCG
96113013 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
96113060 TCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
96113107 TTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
96113154 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
96113201 TTACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTG
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
96113248 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTG
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
96113295 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
96113342 TCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
96113391 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
96113438 CTATCATTTC
Statistics
Matches: 361, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 315 0.87
49 46 0.13
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.33
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:96116917 original size:40 final size:40
Alignment explanation
Indices: 96116854--96117036 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
96116844 CCAGCATGAT
*
96116854 TGCTCTTCGGGA-TTCAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTT-AGCCCGGATATATCACTAGCACGAA
* * *
96116894 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
96116934 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
96116975 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
96117015 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
96117037 CATCATTCGA
Statistics
Matches: 119, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 3 0.03
40 94 0.79
41 22 0.18
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:96117378 original size:29 final size:29
Alignment explanation
Indices: 96117341--96117419 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
96117331 TTAATAATTC
*
96117341 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
96117371 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
96117400 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
96117420 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Done.