Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 285 of 373
Found at i:96666587 original size:220 final size:220
Alignment explanation
Indices: 96666331--96666813 Score: 777
Period size: 220 Copynumber: 2.2 Consensus size: 220
96666321 ATAGCAGATT
* * * *
96666331 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATGTGACACTCCTGTGCTTATAGC
1 TGGCATCCCTGTGTTTATAGGGAACAAATTGAAGATAGCAGATCTGACACTCCTGTGATTATAGC
*
96666396 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGACAGCAGA
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGACAGCAGA
* *
96666461 TTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACA
131 TTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTATGCTTACA
* **
96666526 GCGAAGCAGATCGAAGATTTCAGCA
196 GCAAAAAAGATCGAAGATTTCAGCA
* * *
96666551 TGGCATCCCTGTGTTTATAGGGAACAAATTGAAGATAGCAGATCTGACATTCTTGTGATTATAGT
1 TGGCATCCCTGTGTTTATAGGGAACAAATTGAAGATAGCAGATCTGACACTCCTGTGATTATAGC
*
96666616 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGA
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGACAGCAGA
* * *
96666681 TTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATTTGACATTCCTATGCTTATA
131 TTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTATGCTTACA
96666746 GCAAAAAAGATCGAAGATTTCAGCA
196 GCAAAAAAGATCGAAGATTTCAGCA
* * * *
96666771 TGGCATTCCTGTGCTTATAGGGAACAAGTTGAAGATAACAGAT
1 TGGCATCCCTGTGTTTATAGGGAACAAATTGAAGATAGCAGAT
96666814 TTGGCATCCC
Statistics
Matches: 242, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
220 242 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (220 bp):
TGGCATCCCTGTGTTTATAGGGAACAAATTGAAGATAGCAGATCTGACACTCCTGTGATTATAGC
GAAGCAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGACAGCAGA
TTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTATGCTTACA
GCAAAAAAGATCGAAGATTTCAGCA
Found at i:96670993 original size:18 final size:19
Alignment explanation
Indices: 96670963--96671001 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
96670953 CCTCAATGCC
*
96670963 AAAACATAAATAAAACCAT
1 AAAACATAAATAAAACAAT
96670982 AAAACA-AAATAAAACAAT
1 AAAACATAAATAAAACAAT
96671000 AA
1 AA
96671002 TAGCAAGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.74, C:0.13, G:0.00, T:0.13
Consensus pattern (19 bp):
AAAACATAAATAAAACAAT
Found at i:96674865 original size:43 final size:43
Alignment explanation
Indices: 96674813--96674954 Score: 205
Period size: 43 Copynumber: 3.3 Consensus size: 43
96674803 TTTTTGAAAA
*
96674813 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCGC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
*
96674856 AAACGCCGCTAAA-AGCCATGACCTTTAGCGGCGCTTTTTTTAC
1 AAACGCCGCTAAAGA-CCATGACCTTTAGCGGCGCTTTTTTCAC
* * * * *
96674899 AAACGCCGCTAAAGATCATAACCTTTAGCTGCACTTTTCTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
96674942 AAACGCCGCTAAA
1 AAACGCCGCTAAA
96674955 AATAATGGTA
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
42 1 0.01
43 87 0.98
44 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
Found at i:96678505 original size:46 final size:46
Alignment explanation
Indices: 96678452--96678627 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
96678442 TGGTTGAGCA
96678452 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
96678498 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
96678543 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
96678591 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
96678628 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:96678608 original size:93 final size:93
Alignment explanation
Indices: 96678449--96678619 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
96678439 GGATGGTTGA
* * * *
96678449 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
96678514 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
96678542 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
96678607 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
96678620 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:96685122 original size:47 final size:47
Alignment explanation
Indices: 96685061--96685645 Score: 999
Period size: 47 Copynumber: 12.4 Consensus size: 47
96685051 CAGCCAAGAC
*
96685061 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
96685108 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
96685155 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
96685202 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
96685249 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
96685296 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
96685345 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
96685392 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
96685439 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
96685486 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
96685533 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * *
96685580 AGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
96685627 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
96685646 TCCCGAAGGG
Statistics
Matches: 517, Mismatches: 19, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
47 470 0.91
49 47 0.09
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:96685820 original size:37 final size:37
Alignment explanation
Indices: 96685764--96685842 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
96685754 CCGAGCTCTA
* *
96685764 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
96685801 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
96685838 AAGAC
1 AAGAC
96685843 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:96687426 original size:18 final size:16
Alignment explanation
Indices: 96687395--96687432 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 16
96687385 TATTGATTAA
96687395 TTTTAAATTTTTTTAT
1 TTTTAAATTTTTTTAT
96687411 TTTTAATATATTTTTTAT
1 TTTTAA-AT-TTTTTTAT
96687429 TTTT
1 TTTT
96687433 CTCTTTTGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 6 0.30
17 2 0.10
18 12 0.60
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTAAATTTTTTTAT
Found at i:96687518 original size:7 final size:7
Alignment explanation
Indices: 96687505--96687560 Score: 60
Period size: 7 Copynumber: 8.0 Consensus size: 7
96687495 TTAAATATTA
96687505 AATTTTT
1 AATTTTT
96687512 AAGTTTTT
1 AA-TTTTT
96687520 -ATTTTT
1 AATTTTT
*
96687526 TATTTTT
1 AATTTTT
*
96687533 TATTTTT
1 AATTTTT
*
96687540 AAATTTT
1 AATTTTT
*
96687547 AAATTTT
1 AATTTTT
96687554 AATTTTT
1 AATTTTT
96687561 TTTATTTTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
6 5 0.11
7 34 0.77
8 5 0.11
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (7 bp):
AATTTTT
Found at i:96687523 original size:14 final size:13
Alignment explanation
Indices: 96687506--96687575 Score: 58
Period size: 14 Copynumber: 5.5 Consensus size: 13
96687496 TAAATATTAA
96687506 ATTTTTAAGTTTTT
1 ATTTTTAA-TTTTT
*
96687520 ATTTTTTATTTTTT
1 A-TTTTTAATTTTT
*
96687534 ATTTTTAAATTTTA
1 ATTTTT-AATTTTT
*
96687548 AATTTTAA--TTT
1 ATTTTTAATTTTT
96687559 -TTTTT-ATTTTT
1 ATTTTTAATTTTT
96687570 ATTTTT
1 ATTTTT
96687576 TGAGTTTATT
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
9 1 0.02
10 4 0.09
11 5 0.11
12 5 0.11
13 7 0.16
14 17 0.38
15 6 0.13
ACGTcount: A:0.23, C:0.00, G:0.01, T:0.76
Consensus pattern (13 bp):
ATTTTTAATTTTT
Found at i:96687531 original size:13 final size:13
Alignment explanation
Indices: 96687515--96687593 Score: 61
Period size: 13 Copynumber: 5.7 Consensus size: 13
96687505 AATTTTTAAG
96687515 TTTTTATTTTTTAT
1 TTTTTA-TTTTTAT
96687529 TTTTTATTTTTAAAT
1 TTTTTATTTTT--AT
** *
96687544 TTTAAATTTTAATTT
1 TTTTTATTTT--TAT
96687559 TTTTTATTTTTAT
1 TTTTTATTTTTAT
*
96687572 TTTTTGA-GTTTAT
1 TTTTT-ATTTTTAT
96687585 TTTTTATTT
1 TTTTTATTT
96687594 CGGTTTAATG
Statistics
Matches: 51, Mismatches: 8, Indels: 13
0.71 0.11 0.18
Matches are distributed among these distances:
12 1 0.02
13 23 0.45
14 7 0.14
15 19 0.37
17 1 0.02
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (13 bp):
TTTTTATTTTTAT
Found at i:96687544 original size:36 final size:36
Alignment explanation
Indices: 96687502--96687575 Score: 105
Period size: 35 Copynumber: 2.1 Consensus size: 36
96687492 ATATTAAATA
* *
96687502 TTAAATTTTTAAGTTTTTATTTTTTAT-TTTTTATTT
1 TTAAA-TTTTAAATTTTAATTTTTTATATTTTTATTT
*
96687538 TTAAATTTTAAATTTTAATTTTTTTTATTTTTATTT
1 TTAAATTTTAAATTTTAATTTTTTATATTTTTATTT
96687574 TT
1 TT
96687576 TGAGTTTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
35 18 0.53
36 16 0.47
ACGTcount: A:0.24, C:0.00, G:0.01, T:0.74
Consensus pattern (36 bp):
TTAAATTTTAAATTTTAATTTTTTATATTTTTATTT
Found at i:96687549 original size:43 final size:43
Alignment explanation
Indices: 96687495--96687576 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
96687485 GACTAAAATA
96687495 TTAAATATTAAATTTTTAAGTTTTTAT-TTTTTATTTTTTATTT
1 TTAAATATTAAA-TTTTAAGTTTTTATATTTTTATTTTTTATTT
* * *
96687538 TTAAATTTTAAATTTTAATTTTTTTTATTTTTATTTTTT
1 TTAAATATTAAATTTTAAGTTTTTATATTTTTATTTTTT
96687577 GAGTTTATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
42 12 0.34
43 23 0.66
ACGTcount: A:0.27, C:0.00, G:0.01, T:0.72
Consensus pattern (43 bp):
TTAAATATTAAATTTTAAGTTTTTATATTTTTATTTTTTATTT
Found at i:96688194 original size:15 final size:15
Alignment explanation
Indices: 96688171--96688221 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
96688161 ATATCCATGG
*
96688171 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
*
96688186 CCATAAAACCCTAAA
1 CCATAAAACCTTAAA
* *
96688201 CTAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
96688215 CCTTAAA
1 CCATAAA
96688222 TATTAAACCG
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:96688399 original size:16 final size:17
Alignment explanation
Indices: 96688374--96688407 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
96688364 GAAGTTATAC
*
96688374 TTTAGTGTTT-AGGGTT
1 TTTAGGGTTTAAGGGTT
96688390 TTTAGGGTTTAAGGGTT
1 TTTAGGGTTTAAGGGTT
96688407 T
1 T
96688408 AGTATTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.15, C:0.00, G:0.32, T:0.53
Consensus pattern (17 bp):
TTTAGGGTTTAAGGGTT
Found at i:96688416 original size:53 final size:55
Alignment explanation
Indices: 96688349--96688462 Score: 124
Period size: 53 Copynumber: 2.1 Consensus size: 55
96688339 ATGTTTTTTG
* * *
96688349 GGGTTTAGGGTTTTAGAAGTTATACTTTAGTGTTTA-G-GGTTTTTAGGGTTTAA
1 GGGTTTAGGATTTTAGAAGTTATACATTAGTGTTCATGAGGTTTTTAGGGTTTAA
* ** * ** *
96688402 GGGTTTAGTATTTTAGGGGTTATAGATTAGTGTTCATGATTTTTTTAGGGTTTAG
1 GGGTTTAGGATTTTAGAAGTTATACATTAGTGTTCATGAGGTTTTTAGGGTTTAA
96688457 GGGTTT
1 GGGTTT
96688463 TAGGGGTTAT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
53 29 0.59
54 1 0.02
55 19 0.39
ACGTcount: A:0.19, C:0.02, G:0.31, T:0.48
Consensus pattern (55 bp):
GGGTTTAGGATTTTAGAAGTTATACATTAGTGTTCATGAGGTTTTTAGGGTTTAA
Found at i:96688520 original size:41 final size:41
Alignment explanation
Indices: 96688475--96688677 Score: 268
Period size: 41 Copynumber: 5.0 Consensus size: 41
96688465 GGGGTTATAT
96688475 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
*
96688516 GACTTTTAGCGGCGTTTTACTAAAAGCGCCGCTATTGCTCC
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
* *
96688557 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGATCT
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
* * * * *
96688598 G-TTTTTAGCGGCGTTTTAACAAAAAACGCCTCTATTGCTCT
1 GACTTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTATTGCTCC
* * *
96688639 G-TTTTTAGCGGCGTGTTAACTAAAA-CGCCGCTATTGCTC
1 GACTTTTAGCGGCGT-TTTACCAAAAGCGCCGCTATTGCTC
96688678 TGTGTTTTAC
Statistics
Matches: 148, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
40 28 0.19
41 118 0.80
42 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (41 bp):
GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
Found at i:96697181 original size:44 final size:42
Alignment explanation
Indices: 96697118--96697326 Score: 196
Period size: 44 Copynumber: 4.9 Consensus size: 42
96697108 TTTTTATATG
96697118 TGATTT-CGTGTAAGACCACGTCTGGGACGTTGGCATCAATT
1 TGATTTACGTGTAAGACCACGTCTGGGACGTTGGCATCAATT
* *
96697159 TGAGATTTACGTGTAAGACCACGTTTAGGACGTTGGCATCAATT
1 T--GATTTACGTGTAAGACCACGTCTGGGACGTTGGCATCAATT
* * * *
96697203 TGAAATTTACGTGTAAGACCATGTCTAGGACATCGGCATTGC-ATT
1 TG--ATTTACGTGTAAGACCACGTCTGGGACGTTGGCA-T-CAATT
* *
96697248 TGATTT-CGTATAAGACC-CTGTCTGGGACAG-TGGCATCGATACT
1 TGATTTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATC-A-ATT
* *
96697291 TGA-TTACATGTAAGACCACGTCTGAGACGTTGGCAT
1 TGATTTACGTGTAAGACCACGTCTGGGACGTTGGCAT
96697327 TTTACGAGCT
Statistics
Matches: 138, Mismatches: 15, Indels: 28
0.76 0.08 0.15
Matches are distributed among these distances:
40 1 0.01
41 2 0.01
42 26 0.19
43 37 0.27
44 65 0.47
45 6 0.04
46 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
TGATTTACGTGTAAGACCACGTCTGGGACGTTGGCATCAATT
Found at i:96704855 original size:16 final size:16
Alignment explanation
Indices: 96704834--96704881 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
96704824 AAGTTTAATC
96704834 ACATCAAATTATTTTA
1 ACATCAAATTATTTTA
* ** *
96704850 ACATCAAGTT-TAATC
1 ACATCAAATTATTTTA
96704865 ACATCAAATTATTTTA
1 ACATCAAATTATTTTA
96704881 A
1 A
96704882 ACAATCATTT
Statistics
Matches: 23, Mismatches: 8, Indels: 2
0.70 0.24 0.06
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.44, C:0.15, G:0.02, T:0.40
Consensus pattern (16 bp):
ACATCAAATTATTTTA
Found at i:96704857 original size:31 final size:31
Alignment explanation
Indices: 96704821--96704881 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
96704811 CACACATGTA
96704821 ATCAAGTTTAATCACATCAAATTATTTTAAC
1 ATCAAGTTTAATCACATCAAATTATTTTAAC
96704852 ATCAAGTTTAATCACATCAAATTATTTTAA
1 ATCAAGTTTAATCACATCAAATTATTTTAA
96704882 ACAATCATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.43, C:0.15, G:0.03, T:0.39
Consensus pattern (31 bp):
ATCAAGTTTAATCACATCAAATTATTTTAAC
Found at i:96704870 original size:15 final size:15
Alignment explanation
Indices: 96704821--96704871 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
96704811 CACACATGTA
96704821 ATCAAGTTTAATCAC
1 ATCAAGTTTAATCAC
* ** *
96704836 ATCAAATTATTTTAAC
1 ATCAAGTT-TAATCAC
96704852 ATCAAGTTTAATCAC
1 ATCAAGTTTAATCAC
96704867 ATCAA
1 ATCAA
96704872 ATTATTTTAA
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
15 16 0.59
16 11 0.41
ACGTcount: A:0.43, C:0.18, G:0.04, T:0.35
Consensus pattern (15 bp):
ATCAAGTTTAATCAC
Found at i:96708344 original size:20 final size:20
Alignment explanation
Indices: 96708319--96708356 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
96708309 ACCGAGCTCT
96708319 AGCCGCACCACCCGCCCTCC
1 AGCCGCACCACCCGCCCTCC
96708339 AGCCGCACCACCCGCCCT
1 AGCCGCACCACCCGCCCT
96708357 AAGTTTGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.63, G:0.16, T:0.05
Consensus pattern (20 bp):
AGCCGCACCACCCGCCCTCC
Found at i:96708609 original size:37 final size:37
Alignment explanation
Indices: 96708566--96708648 Score: 132
Period size: 37 Copynumber: 2.2 Consensus size: 37
96708556 GTCCGACTAT
*
96708566 CCCTACACACCATATA-GGTCATTAAATACATATCCAA
1 CCCTACACACCATATAGGGT-ATTAAATACACATCCAA
*
96708603 CCCTACACACCATATAGGGTATTAAATACCCATCCAA
1 CCCTACACACCATATAGGGTATTAAATACACATCCAA
96708640 CCCTACACA
1 CCCTACACA
96708649 ACTTTTAGTG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
37 40 0.93
38 3 0.07
ACGTcount: A:0.39, C:0.34, G:0.06, T:0.22
Consensus pattern (37 bp):
CCCTACACACCATATAGGGTATTAAATACACATCCAA
Found at i:96708916 original size:21 final size:21
Alignment explanation
Indices: 96708892--96708932 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
96708882 TAATGAATAG
96708892 CAGATCATACATAACATATTT
1 CAGATCATACATAACATATTT
* *
96708913 CAGATTATACATAACGTATT
1 CAGATCATACATAACATATT
96708933 ACAAATTATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.34
Consensus pattern (21 bp):
CAGATCATACATAACATATTT
Found at i:96708940 original size:21 final size:21
Alignment explanation
Indices: 96708898--96708941 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
96708888 ATAGCAGATC
* *
96708898 ATACATAACATATTTCAGATT
1 ATACATAACATATTACAAATT
*
96708919 ATACATAACGTATTACAAATT
1 ATACATAACATATTACAAATT
96708940 AT
1 AT
96708942 GCTTATCATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.45, C:0.14, G:0.05, T:0.36
Consensus pattern (21 bp):
ATACATAACATATTACAAATT
Found at i:96713622 original size:26 final size:26
Alignment explanation
Indices: 96713583--96713690 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
96713573 CATGGTACAT
96713583 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
96713609 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
96713635 TGATAATGGGTTAGGTAAAAGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
96713661 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
96713687 TGAT
1 TGAT
96713691 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:96717069 original size:21 final size:20
Alignment explanation
Indices: 96717043--96717081 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
96717033 AATGCACATG
*
96717043 ATATTAAACATGATAATAATA
1 ATATTAAACACGA-AATAATA
96717064 ATATTAAACACGAAATAA
1 ATATTAAACACGAAATAA
96717082 AATCATGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.59, C:0.08, G:0.05, T:0.28
Consensus pattern (20 bp):
ATATTAAACACGAAATAATA
Found at i:96717269 original size:14 final size:13
Alignment explanation
Indices: 96717242--96717311 Score: 51
Period size: 14 Copynumber: 5.5 Consensus size: 13
96717232 ATATGTACAT
96717242 AATAT-ATATAAA
1 AATATAATATAAA
96717254 AATATAATATTAAA
1 AATATAATA-TAAA
* *
96717268 AATAT-ATA-CAT
1 AATATAATATAAA
96717279 AATATAA-AGTTAAA
1 AATATAATA--TAAA
96717293 AATA-ATATATAAA
1 AATATA-ATATAAA
96717306 AATATA
1 AATATA
96717312 TACATGATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
11 7 0.16
12 6 0.13
13 15 0.33
14 16 0.36
15 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (13 bp):
AATATAATATAAA
Found at i:96717271 original size:37 final size:36
Alignment explanation
Indices: 96717219--96717330 Score: 134
Period size: 37 Copynumber: 3.0 Consensus size: 36
96717209 AAGGTGCATT
* * * *
96717219 AATAGTATTGAAAATATGTACATAATATATATAAAA
1 AATAATATTAAAAATATATACATAATATATATTAAA
*
96717255 ATATAATATTAAAAATATATACATAATATAAAGTTAAA
1 A-ATAATATTAAAAATATATACATAATATATA-TTAAA
* *
96717293 AATAATATATAAAAATATATACATGATATCTATTAAA
1 AATAATAT-TAAAAATATATACATAATATATATTAAA
96717330 A
1 A
96717331 GAATATACAC
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
36 1 0.02
37 39 0.60
38 25 0.38
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.34
Consensus pattern (36 bp):
AATAATATTAAAAATATATACATAATATATATTAAA
Found at i:96717291 original size:25 final size:24
Alignment explanation
Indices: 96717245--96717311 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 24
96717235 TGTACATAAT
96717245 ATATATAAAAATATAATATTAAAA
1 ATATATAAAAATATAATATTAAAA
*
96717269 ATATATACATAATATAA-AGTTAAAAATA
1 ATATATA-AAAATATAATA-TT--AAA-A
96717297 ATATATAAAAATATA
1 ATATATAAAAATATA
96717312 TACATGATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
24 8 0.22
25 10 0.28
27 10 0.28
28 8 0.22
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (24 bp):
ATATATAAAAATATAATATTAAAA
Found at i:96717403 original size:22 final size:20
Alignment explanation
Indices: 96717378--96717422 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 20
96717368 AATTGAAGCT
*
96717378 AAAACTAATACTAATAATAGTA
1 AAAACTAATAAT-ATAATA-TA
96717400 AAAACTAATAATATAATATA
1 AAAACTAATAATATAATATA
96717420 AAA
1 AAA
96717423 TAAAATGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.23
21 6 0.27
22 11 0.50
ACGTcount: A:0.64, C:0.07, G:0.02, T:0.27
Consensus pattern (20 bp):
AAAACTAATAATATAATATA
Found at i:96717411 original size:3 final size:3
Alignment explanation
Indices: 96717383--96717556 Score: 58
Period size: 3 Copynumber: 58.0 Consensus size: 3
96717373 AAGCTAAAAC
* * *
96717383 TAA TAC TAA TAA TAG TAA AAA CTAA TAA T-A TAA T-A TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
96717426 -AA TGAA -AA TAA -AGA -AA TAA TAG TAA TAA TAC GAA GAT TAA TAA
1 TAA T-AA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * * *
96717469 TAG TAA TAG TAA CAA TAA TGA TAA TATA TATG TATA TGAA TAG TAC TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TA-A T-AA TAA TAA TAA
* **
96717518 TAA TAA TAA TAA TAC TAA -AA TAA TTAA TTT TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
96717557 AGTAATTAAA
Statistics
Matches: 125, Mismatches: 33, Indels: 26
0.68 0.18 0.14
Matches are distributed among these distances:
2 14 0.11
3 93 0.74
4 17 0.14
5 1 0.01
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:96717545 original size:21 final size:21
Alignment explanation
Indices: 96717516--96717565 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
96717506 GAATAGTACT
*
96717516 AATAA-TAATAATAATACTAA
1 AATAATTAATAATAATAATAA
**
96717536 AATAATTAATTTTAATAATAA
1 AATAATTAATAATAATAATAA
*
96717557 AGTAATTAA
1 AATAATTAA
96717566 AAAAGGATCG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 5 0.20
21 20 0.80
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
AATAATTAATAATAATAATAA
Found at i:96718090 original size:13 final size:13
Alignment explanation
Indices: 96718072--96718096 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
96718062 GCAGGTCCAT
96718072 CGCCGGCCACCGA
1 CGCCGGCCACCGA
96718085 CGCCGGCCACCG
1 CGCCGGCCACCG
96718097 CACGTAGTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.56, G:0.32, T:0.00
Consensus pattern (13 bp):
CGCCGGCCACCGA
Found at i:96719646 original size:46 final size:45
Alignment explanation
Indices: 96719570--96719730 Score: 175
Period size: 46 Copynumber: 3.5 Consensus size: 45
96719560 AATGTAAAAC
* *
96719570 CATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGA
1 CATGTCTGGGACAT-GCATCGGCCTCGAGACGAGT-CTAGTGTAAGA
* * *
96719617 CATGTCTGGAACATACATCGGCCTCGAGACGTAAGT-TAGTATAAGA
1 CATGTCTGGGACATGCATCGGCCTCGAGACG--AGTCTAGTGTAAGA
*
96719663 CATGTCTGGGACATGCATCGG-CTACGAGACGTGTC-AGTGTAAGA
1 CATGTCTGGGACATGCATCGGCCT-CGAGACGAGTCTAGTGTAAGA
*
96719707 CCATGTCCGGGACATGGCATCGGC
1 -CATGTCTGGGACAT-GCATCGGC
96719731 ACCTTACCCC
Statistics
Matches: 97, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
44 10 0.10
45 15 0.15
46 56 0.58
47 13 0.13
48 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (45 bp):
CATGTCTGGGACATGCATCGGCCTCGAGACGAGTCTAGTGTAAGA
Found at i:96726087 original size:25 final size:26
Alignment explanation
Indices: 96726058--96726112 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 26
96726048 TGAAATTCCC
96726058 ATCATGGAACATTTACCTAA-CCATT
1 ATCATGGAACATTTACCTAACCCATT
96726083 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
96726109 ATCA
1 ATCA
96726113 ATTTGTATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 20 0.69
26 9 0.31
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:96726868 original size:34 final size:35
Alignment explanation
Indices: 96726801--96726883 Score: 98
Period size: 34 Copynumber: 2.4 Consensus size: 35
96726791 CTGGTCTGAT
*
96726801 ATGACATTCTGATATGATATATATGCTTTTGAAAAA
1 ATGACATTTTGATATGA-ATATATGCTTTTGAAAAA
*
96726837 ATGACATTTTGATATG-ATATATG-TTTATGAAAAT
1 ATGACATTTTGATATGAATATATGCTTT-TGAAAAA
* *
96726871 ATGATACTTTGAT
1 ATGACATTTTGAT
96726884 CCGAAATATG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
33 3 0.07
34 24 0.57
36 15 0.36
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.42
Consensus pattern (35 bp):
ATGACATTTTGATATGAATATATGCTTTTGAAAAA
Found at i:96729808 original size:46 final size:46
Alignment explanation
Indices: 96729738--96730047 Score: 415
Period size: 46 Copynumber: 6.9 Consensus size: 46
96729728 TTTGAAGTGA
* * * * * *
96729738 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
96729784 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
96729830 TGCCATGGTATCTTTTAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
96729876 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA-GT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
96729921 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
96729967 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
96730005 TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
96730048 AAGAGCACAC
Statistics
Matches: 238, Mismatches: 16, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
38 33 0.14
39 1 0.00
40 2 0.01
41 1 0.00
43 1 0.00
44 3 0.01
45 50 0.21
46 147 0.62
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:96729960 original size:91 final size:91
Alignment explanation
Indices: 96729738--96730047 Score: 420
Period size: 91 Copynumber: 3.5 Consensus size: 91
96729728 TTTGAAGTGA
* * * * * *
96729738 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAA
** * *
96729802 CCATGGTCTTATTCTTTTCATGTCACGT
65 CCATGGTCTTACACATTTCATATCA-GT
* *
96729830 TGCCATGGTATCTTTTAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
96729895 CATGGTCTTACACATTTCATATCAGT
66 CATGGTCTTACACATTTCATATCAGT
96729921 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
*
96729986 CATGGTCTTACACA---C--A--GGT
66 CATGGTCTTACACATTTCATATCAGT
*
96730005 TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
96730048 AAGAGCACAC
Statistics
Matches: 201, Mismatches: 16, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
84 44 0.22
86 1 0.00
88 1 0.00
91 82 0.41
92 73 0.36
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (91 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCAGT
Found at i:96729987 original size:137 final size:130
Alignment explanation
Indices: 96729738--96730047 Score: 417
Period size: 137 Copynumber: 2.3 Consensus size: 130
96729728 TTTGAAGTGA
* * * * *
96729738 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTGCCATGGTATCTTTCAA
** * * *
96729802 CCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTTAACCATGGTCTTACACATCTC
65 CCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTT--ACA---C
96729867 ATATCAGGT
125 --A-CAGGT
96729876 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA-GTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
*
96729940 CATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGT
66 CATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGT
*
96730005 TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
96730048 AAGAGCACAC
Statistics
Matches: 159, Mismatches: 12, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
129 47 0.30
130 1 0.01
132 1 0.01
135 3 0.02
137 74 0.47
138 33 0.21
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (130 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGT
Found at i:96730013 original size:38 final size:38
Alignment explanation
Indices: 96729962--96730035 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
96729952 CATTTCATAT
96729962 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
96730000 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
96730036 TATTTCATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:96732190 original size:11 final size:11
Alignment explanation
Indices: 96732174--96732221 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
96732164 CTTTATATAC
96732174 TAATAAAATAA
1 TAATAAAATAA
*
96732185 TAATAAAATATCT
1 TAATAAAATA--A
* *
96732198 TATTAAAATAT
1 TAATAAAATAA
96732209 TAATAAAATAA
1 TAATAAAATAA
96732220 TA
1 TA
96732222 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:96733196 original size:22 final size:22
Alignment explanation
Indices: 96733151--96733212 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
96733141 CTATAGGCCT
96733151 TAAAT-CTCAAAC-CTTAAACTA
1 TAAATCCT-AAACTCTTAAACTA
96733172 TAAATCCTAAACTCTTAAA-TCA
1 TAAATCCTAAACTCTTAAACT-A
* *
96733194 TAAACCCTAAAATCTTAAA
1 TAAATCCTAAACTCTTAAA
96733213 AATAAATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
21 10 0.28
22 26 0.72
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (22 bp):
TAAATCCTAAACTCTTAAACTA
Found at i:96733697 original size:42 final size:42
Alignment explanation
Indices: 96733643--96733742 Score: 139
Period size: 42 Copynumber: 2.4 Consensus size: 42
96733633 ATTTAAGTTC
*
96733643 AAGGTTTAGGGTATTGGGTTTAGAATTTAGTTTATAAGGTTT
1 AAGGTTTAGGGTATTGGGTTTAGAATTTAGTCTATAAGGTTT
* * *
96733685 AAGGTATT-GGGTATTGGGTTTAGAGTTTGGTCTATAGGGTTT
1 AAGGT-TTAGGGTATTGGGTTTAGAATTTAGTCTATAAGGTTT
*
96733727 AGGGTTTAGGGTATTG
1 AAGGTTTAGGGTATTG
96733743 TGTATTTGGT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
41 2 0.04
42 47 0.92
43 2 0.04
ACGTcount: A:0.22, C:0.01, G:0.34, T:0.43
Consensus pattern (42 bp):
AAGGTTTAGGGTATTGGGTTTAGAATTTAGTCTATAAGGTTT
Found at i:96733729 original size:7 final size:7
Alignment explanation
Indices: 96733719--96733792 Score: 62
Period size: 7 Copynumber: 10.4 Consensus size: 7
96733709 GTTTGGTCTA
96733719 TAGGGTT
1 TAGGGTT
96733726 TAGGGTT
1 TAGGGTT
96733733 TAGGGTAT
1 TAGGGT-T
*
96733741 T-GTGTAT
1 TAGGGT-T
*
96733748 T-TGGTT
1 TAGGGTT
96733754 TAGGGTT
1 TAGGGTT
** *
96733761 TAGTCTA
1 TAGGGTT
96733768 TAGGGTT
1 TAGGGTT
96733775 TAGGGTAT
1 TAGGGT-T
96733783 TAGGGTT
1 TAGGGTT
96733790 TAG
1 TAG
96733793 TGTATTGGTT
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
6 2 0.04
7 43 0.80
8 9 0.17
ACGTcount: A:0.18, C:0.01, G:0.36, T:0.45
Consensus pattern (7 bp):
TAGGGTT
Found at i:96733753 original size:21 final size:22
Alignment explanation
Indices: 96733726--96733785 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 22
96733716 CTATAGGGTT
*
96733726 TAGGGTTTAGGGTATT-GTGTA
1 TAGGGTTTAGGGTATTAGTCTA
**
96733747 TTTGGTTTAGGGT-TTAGTCTA
1 TAGGGTTTAGGGTATTAGTCTA
96733768 TAGGGTTTAGGGTATTAG
1 TAGGGTTTAGGGTATTAG
96733786 GGTTTAGTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 2 0.06
21 26 0.81
22 4 0.12
ACGTcount: A:0.18, C:0.02, G:0.35, T:0.45
Consensus pattern (22 bp):
TAGGGTTTAGGGTATTAGTCTA
Found at i:96733801 original size:49 final size:48
Alignment explanation
Indices: 96733680--96733803 Score: 169
Period size: 49 Copynumber: 2.5 Consensus size: 48
96733670 TAGTTTATAA
* * *
96733680 GGTTTAAGGTATTGGGTATTGGGTTTAGAGTTTGGTCTATAGGGTTTAG
1 GGTTTAGGGTATTGTGTATT-GGTTTAGAGTTTAGTCTATAGGGTTTAG
*
96733729 GGTTTAGGGTATTGTGTATTTGGTTTAGGGTTTAGTCTATAGGGTTTAG
1 GGTTTAGGGTATTGTGTA-TTGGTTTAGAGTTTAGTCTATAGGGTTTAG
96733778 GGTATTAGGGT-TTAGTGTATTGGTTT
1 GGT-TTAGGGTATT-GTGTATTGGTTT
96733804 TGGGATTAAT
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
49 54 0.79
50 14 0.21
ACGTcount: A:0.17, C:0.02, G:0.35, T:0.46
Consensus pattern (48 bp):
GGTTTAGGGTATTGTGTATTGGTTTAGAGTTTAGTCTATAGGGTTTAG
Found at i:96734183 original size:83 final size:84
Alignment explanation
Indices: 96734096--96734323 Score: 273
Period size: 84 Copynumber: 2.7 Consensus size: 84
96734086 ATTGAAATGT
* *
96734096 CGTCGTTTTATTTCGCG-GGTAGT-GG-ATTTAGTGGCGCTATCTTATAAACGCCACTAATAATA
1 CGTCGTTTTATGTCGCGCGGT-GTAGGTA-TTAGTGGCGCTATCTTATAAACGCCACTAAGAATA
*
96734158 TGAAAAATCGAATGAAAACTA
64 TGAAAAACCGAATGAAAACTA
* * * *
96734179 CGTCGTTTTATGTGGCGCGGTTTAGGTATTAGTGGCGTTATCTTATAAGCGCCACTAAGAATATG
1 CGTCGTTTTATGTCGCGCGGTGTAGGTATTAGTGGCGCTATCTTATAAACGCCACTAAGAATATG
*
96734244 AGAAACCGAATGAAAACTA
66 AAAAACCGAATGAAAACTA
* * * * * * * *
96734263 CGTCGTTTTATGTGGCACGGTTTAGGAATTAGTGGCGCTATCCTAAAAACACCACAAAGAA
1 CGTCGTTTTATGTCGCGCGGTGTAGGTATTAGTGGCGCTATCTTATAAACGCCACTAAGAA
96734324 ACTGAGTTAC
Statistics
Matches: 126, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
83 16 0.13
84 109 0.87
85 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (84 bp):
CGTCGTTTTATGTCGCGCGGTGTAGGTATTAGTGGCGCTATCTTATAAACGCCACTAAGAATATG
AAAAACCGAATGAAAACTA
Found at i:96734232 original size:84 final size:84
Alignment explanation
Indices: 96734123--96734323 Score: 303
Period size: 84 Copynumber: 2.4 Consensus size: 84
96734113 GGTAGTGGAT
* *
96734123 TTAGTGGCGCTATCTTATAAACGCCACTAATAATATGAAAAATCGAATGAAAACTACGTCGTTTT
1 TTAGTGGCGCTATCTTATAAACGCCACTAAGAATATGAAAAACCGAATGAAAACTACGTCGTTTT
* *
96734188 ATGTGGCGCGGTTTAGGTA
66 ATGTGGCACGGTTTAGGAA
* * *
96734207 TTAGTGGCGTTATCTTATAAGCGCCACTAAGAATATGAGAAACCGAATGAAAACTACGTCGTTTT
1 TTAGTGGCGCTATCTTATAAACGCCACTAAGAATATGAAAAACCGAATGAAAACTACGTCGTTTT
96734272 ATGTGGCACGGTTTAGGAA
66 ATGTGGCACGGTTTAGGAA
* * * *
96734291 TTAGTGGCGCTATCCTAAAAACACCACAAAGAA
1 TTAGTGGCGCTATCTTATAAACGCCACTAAGAA
96734324 ACTGAGTTAC
Statistics
Matches: 104, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
84 104 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (84 bp):
TTAGTGGCGCTATCTTATAAACGCCACTAAGAATATGAAAAACCGAATGAAAACTACGTCGTTTT
ATGTGGCACGGTTTAGGAA
Found at i:96734707 original size:16 final size:16
Alignment explanation
Indices: 96734682--96734714 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
96734672 GGAATGCATA
96734682 TTTCTATTGTTAATGC
1 TTTCTATTGTTAATGC
*
96734698 TTTCTGTTGTTAATGC
1 TTTCTATTGTTAATGC
96734714 T
1 T
96734715 CAGCACTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.58
Consensus pattern (16 bp):
TTTCTATTGTTAATGC
Found at i:96736738 original size:50 final size:51
Alignment explanation
Indices: 96736671--96736777 Score: 128
Period size: 50 Copynumber: 2.1 Consensus size: 51
96736661 AGATGTTAAG
* * *
96736671 TTTATATATTCTATCAATTT-GATCTTGATTTAACAAA-TTAAATCGTAATA
1 TTTATATATTCTATCAATTTAG-TCATAATTTAACAAATTTAAATCGTAACA
* * **
96736721 TTTATATATTTTGTCAATTTAGTCATAATTTAACAAATTTAGCTCGTAACA
1 TTTATATATTCTATCAATTTAGTCATAATTTAACAAATTTAAATCGTAACA
96736772 TTTATA
1 TTTATA
96736778 CGTTATGTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
50 31 0.65
51 17 0.35
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.47
Consensus pattern (51 bp):
TTTATATATTCTATCAATTTAGTCATAATTTAACAAATTTAAATCGTAACA
Found at i:96737200 original size:3 final size:3
Alignment explanation
Indices: 96737194--96737228 Score: 52
Period size: 3 Copynumber: 11.0 Consensus size: 3
96737184 ATTATTATTA
96737194 TTG TTG TTG TTG TTTG TTG TTG TTG TTG TTTG TTG
1 TTG TTG TTG TTG -TTG TTG TTG TTG TTG -TTG TTG
96737229 ATTCGAGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 24 0.80
4 6 0.20
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:96737215 original size:16 final size:16
Alignment explanation
Indices: 96737194--96737228 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
96737184 ATTATTATTA
96737194 TTGTTGTTGTTGTTTG
1 TTGTTGTTGTTGTTTG
96737210 TTGTTGTTGTTGTTTG
1 TTGTTGTTGTTGTTTG
96737226 TTG
1 TTG
96737229 ATTCGAGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (16 bp):
TTGTTGTTGTTGTTTG
Found at i:96737228 original size:13 final size:13
Alignment explanation
Indices: 96737194--96737220 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
96737184 ATTATTATTA
96737194 TTGTTGTTGTTGT
1 TTGTTGTTGTTGT
96737207 TTGTTGTTGTTGT
1 TTGTTGTTGTTGT
96737220 T
1 T
96737221 GTTTGTTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.30, T:0.70
Consensus pattern (13 bp):
TTGTTGTTGTTGT
Found at i:96737671 original size:13 final size:13
Alignment explanation
Indices: 96737653--96737682 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
96737643 CCACATAATA
96737653 CATAAATATATAT
1 CATAAATATATAT
96737666 CATAAATATATAT
1 CATAAATATATAT
96737679 CATA
1 CATA
96737683 TCATAAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (13 bp):
CATAAATATATAT
Found at i:96737696 original size:9 final size:9
Alignment explanation
Indices: 96737684--96737748 Score: 60
Period size: 9 Copynumber: 7.2 Consensus size: 9
96737674 TATATCATAT
*
96737684 CATAAGTTA
1 CATAACTTA
96737693 CATAACTTA
1 CATAACTTA
*
96737702 CATACCTTA
1 CATAACTTA
*
96737711 CATAAATGTA
1 CATAACT-TA
* * *
96737721 TATCA-TAA
1 CATAACTTA
96737729 CATAACTTA
1 CATAACTTA
96737738 CATAACTTA
1 CATAACTTA
96737747 CA
1 CA
96737749 AAGTTTACTT
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
8 4 0.09
9 35 0.80
10 5 0.11
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.32
Consensus pattern (9 bp):
CATAACTTA
Found at i:96742906 original size:13 final size:14
Alignment explanation
Indices: 96742890--96742918 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
96742880 TTCTAAATAT
96742890 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
96742903 TTATAATTGTTTAA
1 TTATAATTGTTTAA
96742917 TT
1 TT
96742919 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:96743669 original size:33 final size:33
Alignment explanation
Indices: 96743619--96743700 Score: 96
Period size: 31 Copynumber: 2.5 Consensus size: 33
96743609 TTAGAATTAA
* *
96743619 TGTTTTTGGTTGTATTTTTTATGCTAAATTTGT
1 TGTTTTTGGTTGCATTTTTTATACTAAATTTGT
* *
96743652 TGTTTTTGGCTGCA--TTTTATACTATATTTGT
1 TGTTTTTGGTTGCATTTTTTATACTAAATTTGT
* *
96743683 TGTATTTGGTTGGATTTT
1 TGTTTTTGGTTGCATTTT
96743701 AATGCAGGAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
31 26 0.65
33 14 0.35
ACGTcount: A:0.15, C:0.05, G:0.20, T:0.61
Consensus pattern (33 bp):
TGTTTTTGGTTGCATTTTTTATACTAAATTTGT
Found at i:96745791 original size:15 final size:14
Alignment explanation
Indices: 96745765--96745800 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
96745755 GTTTGCTTCC
96745765 GTACCAATTTTGTA
1 GTACCAATTTTGTA
96745779 GTACCATATTTTGTA
1 GTACCA-ATTTTGTA
*
96745794 ATACCAA
1 GTACCAA
96745801 ATATTGCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (14 bp):
GTACCAATTTTGTA
Found at i:96748988 original size:10 final size:10
Alignment explanation
Indices: 96748973--96749049 Score: 54
Period size: 9 Copynumber: 7.8 Consensus size: 10
96748963 TTATTAAATT
96748973 ATTTTTTATA
1 ATTTTTTATA
96748983 A-TTTTTATA
1 ATTTTTTATA
* *
96748992 AATTATTA-A
1 ATTTTTTATA
*
96749001 TATTTTTT-GA
1 -ATTTTTTATA
*
96749011 ATTTTTTACA
1 ATTTTTTATA
96749021 TATTTTTTATA
1 -ATTTTTTATA
96749032 TATTTTTT-TA
1 -ATTTTTTATA
*
96749042 AATTTTTA
1 ATTTTTTA
96749050 GCGGAAAAGA
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
9 23 0.42
10 15 0.27
11 17 0.31
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (10 bp):
ATTTTTTATA
Found at i:96749037 original size:20 final size:19
Alignment explanation
Indices: 96748984--96749037 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
96748974 TTTTTTATAA
*
96748984 TTTTTATAAATTATTAATAT
1 TTTTTATATATT-TTAATAT
*
96749004 TTTTTGA-ATTTTTTACATAT
1 TTTTT-ATATATTTTA-ATAT
96749024 TTTTTATATATTTT
1 TTTTTATATATTTT
96749038 TTTAAATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
19 4 0.14
20 23 0.82
21 1 0.04
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTTATATATTTTAATAT
Found at i:96749596 original size:25 final size:26
Alignment explanation
Indices: 96749562--96749610 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
96749552 CCGACCCGAG
*
96749562 CAAACAAAACCA-AAAACCAAAAAAA
1 CAAACAAAACAAGAAAACCAAAAAAA
*
96749587 CAAACAAAACAAGAAAATCAAAAA
1 CAAACAAAACAAGAAAACCAAAAA
96749611 TATTATAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.76, C:0.20, G:0.02, T:0.02
Consensus pattern (26 bp):
CAAACAAAACAAGAAAACCAAAAAAA
Found at i:96750791 original size:21 final size:21
Alignment explanation
Indices: 96750767--96750811 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
96750757 GCTACCGAGG
96750767 GTCATAATCCAAAGACCTACA
1 GTCATAATCCAAAGACCTACA
96750788 GTCATAATCCAAAGACCTACA
1 GTCATAATCCAAAGACCTACA
96750809 GTC
1 GTC
96750812 TTCCCCTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.40, C:0.29, G:0.11, T:0.20
Consensus pattern (21 bp):
GTCATAATCCAAAGACCTACA
Found at i:96757149 original size:132 final size:132
Alignment explanation
Indices: 96756939--96757982 Score: 1683
Period size: 132 Copynumber: 7.9 Consensus size: 132
96756929 ATCCTACAGA
** * * *
96756939 TCTTGTTTCCCTAAAGTTACAGTGAAGCAGATCAAAGACGGCGAATCTTGGCTTCCTGAAGTTGT
1 TCTTGTTTCCCTGGAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGC
*
96757004 AGTGAAGCAGATTTAAGCCACAAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
66 AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
*
96757069 AG
131 GG
* *
96757071 TCTTGTTTCCCTGGAGTTGCAGTGAAACAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTTGC
1 TCTTGTTTCCCTGGAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGC
96757136 AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
66 AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
96757201 GG
131 GG
* * *
96757203 TCTTGTTTCCCTAGAGTTGCAATGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGT
1 TCTTGTTTCCCTGGAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGC
*
96757268 AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCAGAAATTTTA
66 AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
96757333 GG
131 GG
* * * *
96757335 TCTTGTTTCCCTGAAGTTGTAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTTGT
1 TCTTGTTTCCCTGGAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGC
* * * * *
96757400 AGTGAAGCAGATTTAAGCCATCAACCTAGCTCCCTAAAGTTTTAGTAGAGTAGACTAAAATTTTA
66 AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
96757465 GG
131 GG
*
96757467 TCTTGTTTCCCTGGAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTAGCTTCCTGAAGTTGC
1 TCTTGTTTCCCTGGAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGC
* *
96757532 AGTGAAGCAGATTTAAGCCACCAACCTAGCTTCCTAAAGTTGTAGTGGAGTAGGCTAAAATTTTA
66 AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
*
96757597 GA
131 GG
*
96757599 TCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGC
1 TCTTGTTTCCCTGGAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGC
* *
96757664 AGTGAAGAAGATTTAAGCCACCAACCTAGCTTCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
66 AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
96757729 GG
131 GG
* * * * *
96757731 TCTTGTTTCCCTGCAGTTGTAGTGAAGCAAATCGAAGACGGTGAATCTTGGCTTCCTAAAGTTGC
1 TCTTGTTTCCCTGGAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGC
* * *
96757796 AGTGAAGTAGATTTAAGCTACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGATGAAATTTTA
66 AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
96757861 GG
131 GG
* * * *
96757863 TCTTGTTTCCCTGGAGTTGTAGTGAAGCAGATCGAAGACAGCGAATCTTGGCTTCTTGAAGTTAC
1 TCTTGTTTCCCTGGAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGC
* * * *
96757928 AGTGAAGCAGATTTAAGCCACTAACCTAGCTTCCTAAAGTTATAATGGAGTAGGC
66 AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGC
96757983 CGAAGATTGC
Statistics
Matches: 847, Mismatches: 65, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 847 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (132 bp):
TCTTGTTTCCCTGGAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGC
AGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTA
GG
Found at i:96757274 original size:45 final size:45
Alignment explanation
Indices: 96757225--96757675 Score: 153
Period size: 45 Copynumber: 10.2 Consensus size: 45
96757215 AGAGTTGCAA
*
96757225 TGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGTAG
1 TGAAGCAGATCGAAGACGGCGAATCTTAGCTTCCTGAAGTTGTAG
** ** * * * *
96757270 TGAAGCAGATTTAAG-CCACCAA-CCTAGCTCCCTAAAGTTGTAG
1 TGAAGCAGATCGAAGACGGCGAATCTTAGCTTCCTGAAGTTGTAG
* * * **** * *
96757313 TGGAGTAG-GCAGAA-A-TTTTAGGTCTT-GTTTCCCTGAAGTTGTAG
1 TGAAGCAGATC-GAAGACGGCGA-ATCTTAGCTT-CCTGAAGTTGTAG
* *
96757357 TGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTTGTAG
1 TGAAGCAGATCGAAGACGGCGAATCTTAGCTTCCTGAAGTTGTAG
** * ** * * * *
96757402 TGAAGCAGATTTAAGCCATC-AA-CCTAGCTCCCTAAAGTTTTAG
1 TGAAGCAGATCGAAGACGGCGAATCTTAGCTTCCTGAAGTTGTAG
* * ***** * * * *
96757445 T-AGAGTAGA-CTAA-AATTTTAGGTCTT-GTTTCCCTGGAGTTGCAG
1 TGA-AGCAGATCGAAGACGGCGA-ATCTTAGCTT-CCTGAAGTTGTAG
*
96757489 TGAAGCAGATCGAAGACGGCGAATCTTAGCTTCCTGAAGTTGCAG
1 TGAAGCAGATCGAAGACGGCGAATCTTAGCTTCCTGAAGTTGTAG
** ** * * *
96757534 TGAAGCAGATTTAAG-CCACCAA-CCTAGCTTCCTAAAGTTGTAG
1 TGAAGCAGATCGAAGACGGCGAATCTTAGCTTCCTGAAGTTGTAG
* * * * ***** * *
96757577 TGGAGTAG-GCTAA-AATTTTAGATCTT-GTTTCCCTGAAGTTGCAG
1 TGAAGCAGATCGAAGACGGCGA-ATCTTAGCTT-CCTGAAGTTGTAG
* *
96757621 TGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGCAG
1 TGAAGCAGATCGAAGACGGCGAATCTTAGCTTCCTGAAGTTGTAG
*
96757666 TGAAGAAGAT
1 TGAAGCAGAT
96757676 TTAAGCCACC
Statistics
Matches: 283, Mismatches: 98, Indels: 50
0.66 0.23 0.12
Matches are distributed among these distances:
41 1 0.00
42 10 0.04
43 79 0.28
44 69 0.24
45 109 0.39
46 15 0.05
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (45 bp):
TGAAGCAGATCGAAGACGGCGAATCTTAGCTTCCTGAAGTTGTAG
Found at i:96758378 original size:24 final size:25
Alignment explanation
Indices: 96758351--96758398 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
96758341 CCGACCCGAG
*
96758351 CAAACAAAACCA-AAAACCAAAAAA
1 CAAACAAAACAAGAAAACCAAAAAA
*
96758375 CAAACAAAACAAGAAAATCAAAAA
1 CAAACAAAACAAGAAAACCAAAAA
96758399 TATTATAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.75, C:0.21, G:0.02, T:0.02
Consensus pattern (25 bp):
CAAACAAAACAAGAAAACCAAAAAA
Found at i:96761311 original size:131 final size:131
Alignment explanation
Indices: 96760847--96761300 Score: 626
Period size: 131 Copynumber: 3.5 Consensus size: 131
96760837 AGATTTAATG
*
96760847 TTTGGCAATTAGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
1 TTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
* *
96760912 CAAATATCACTTCAAAATTTCATTCATGTCTTTTAAAAATCCCTTAAACGAAGGCGATATGCGAT
66 CAAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAGGCAATATGCGAT
96760977 A
131 A
*
96760978 TTTGGCAATTCGCGGAATTGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
1 TTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
96761043 CAAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAGGCAATATGCGAT
66 CAAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAGGCAATATGCGAT
96761108 A
131 A
* * ** * *
96761109 TTTGGCAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCCCACTTGTTTAAAATAAT
1 TTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
* * * * * *
96761174 CAAATATCCCTTCAAAATTTCACTCAGGTCTTCTAAAAATCCTTTAAAACAAAGGTAATACTTG-
66 CAAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTT-AAACGAAGGCAATA--TGC
*
96761238 G-TG
128 GATA
* * * * * ** * *
96761241 TTTGACAATTCG-AGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAA
1 TTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAA
96761301 CAATTGAATA
Statistics
Matches: 291, Mismatches: 29, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
131 264 0.91
132 24 0.08
133 1 0.00
134 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (131 bp):
TTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
CAAATATCACTTCAAAATTTCACTCATGTCTTTTAAAAATCCCTTAAACGAAGGCAATATGCGAT
A
Found at i:96763790 original size:46 final size:45
Alignment explanation
Indices: 96763740--96763915 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
96763730 TGGTTGAGCA
96763740 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
96763786 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* *
96763831 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
96763879 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
96763916 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:96763896 original size:93 final size:93
Alignment explanation
Indices: 96763737--96763907 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
96763727 GGATGGTTGA
* * *
96763737 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
96763802 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
96763830 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
*
96763895 TGAGTTCGAGTTC
66 TGAGTCCGAGTTC
96763908 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:96771371 original size:46 final size:46
Alignment explanation
Indices: 96771312--96771473 Score: 188
Period size: 46 Copynumber: 3.5 Consensus size: 46
96771302 TCCGAACTCG
96771312 GTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGA
1 GTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGA
* * * *
96771358 GTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCCGAACTCGTTGA
1 GTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCGAACTCGTTGA
* * *
96771405 GTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGA
1 GTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGA
96771451 GTTGAGTCCGAGTTCACTTATGG
1 GTTGAGTCCGAGTTCACTTATGG
96771474 GCGGGTTACA
Statistics
Matches: 96, Mismatches: 11, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 50 0.52
47 29 0.30
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGA
Found at i:96784943 original size:21 final size:19
Alignment explanation
Indices: 96784919--96784967 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 19
96784909 TTAATTAAAA
96784919 TTAATTAATAATATTTTTATC
1 TTAATTAATAATA-TTTTA-C
**
96784940 TTAATTAATCTTATTTTAC
1 TTAATTAATAATATTTTAC
96784959 TTAATTAAT
1 TTAATTAAT
96784968 CAACATGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 10 0.38
20 5 0.19
21 11 0.42
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (19 bp):
TTAATTAATAATATTTTAC
Found at i:96784963 original size:19 final size:21
Alignment explanation
Indices: 96784919--96784969 Score: 70
Period size: 19 Copynumber: 2.5 Consensus size: 21
96784909 TTAATTAAAA
*
96784919 TTAATTAATAATATTTTTATC
1 TTAATTAATCATATTTTTATC
*
96784940 TTAATTAATCTTA-TTTTA-C
1 TTAATTAATCATATTTTTATC
96784959 TTAATTAATCA
1 TTAATTAATCA
96784970 ACATGACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 11 0.41
20 5 0.19
21 11 0.41
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (21 bp):
TTAATTAATCATATTTTTATC
Found at i:96788511 original size:5 final size:5
Alignment explanation
Indices: 96788503--96788529 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
96788493 TAGTTTACTC
96788503 ATAAT ATAAT ATAAT ATAAT ATAAT AT
1 ATAAT ATAAT ATAAT ATAAT ATAAT AT
96788530 TCCTATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATAAT
Found at i:96790325 original size:151 final size:150
Alignment explanation
Indices: 96790129--96790432 Score: 556
Period size: 151 Copynumber: 2.0 Consensus size: 150
96790119 TTCAAATTTA
96790129 TTTAAAGGCTCATTTAATGCAAATTTGTATCTTTATTCATGGAAATTTCAAAAAATTCCTCCATT
1 TTTAAAGGCTCATTTAATGCAAATTTGTATCTTTATTCATGGAAATTTCAAAAAATTCCTCCATT
*
96790194 TTGAATGCCTATAAAAGCCTAAAAAATA-CTGCAGAATTCTTTAAAAGACAAACAACGAATTTAT
66 TTGAATGCCTATAAAAGCCTAAAAAATACCT-CAGAATTCTTT-AAAGACAAACAACAAATTTAT
96790258 TTCACTCTCAAAAATTCTTTTC
129 TTCACTCTCAAAAATTCTTTTC
*
96790280 TTTAAAGGCTCCTTTAATGCAAATTTGTATCTTTATTCATGGAAATTTCAAAAAATTCCTCCATT
1 TTTAAAGGCTCATTTAATGCAAATTTGTATCTTTATTCATGGAAATTTCAAAAAATTCCTCCATT
*
96790345 TTGAATGCCTATAAAAGCCTAAAAAATACCTCAGAATTCTTTAAAGACAAATAACAAATTTATTT
66 TTGAATGCCTATAAAAGCCTAAAAAATACCTCAGAATTCTTTAAAGACAAACAACAAATTTATTT
96790410 CACTCTCAAAAATTCTTTTC
131 CACTCTCAAAAATTCTTTTC
96790430 TTT
1 TTT
96790433 TCCTCTCCAA
Statistics
Matches: 149, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
150 44 0.30
151 103 0.69
152 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (150 bp):
TTTAAAGGCTCATTTAATGCAAATTTGTATCTTTATTCATGGAAATTTCAAAAAATTCCTCCATT
TTGAATGCCTATAAAAGCCTAAAAAATACCTCAGAATTCTTTAAAGACAAACAACAAATTTATTT
CACTCTCAAAAATTCTTTTC
Found at i:96797318 original size:2 final size:2
Alignment explanation
Indices: 96797311--96797350 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
96797301 TTATATTAAA
96797311 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
96797351 TACTACATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:96802409 original size:15 final size:15
Alignment explanation
Indices: 96802389--96802427 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
96802379 TAACGTCAAA
96802389 TTTCTTTTCCATTCT
1 TTTCTTTTCCATTCT
**
96802404 TTTCTTTGACATTCT
1 TTTCTTTTCCATTCT
*
96802419 TCTCTTTTC
1 TTTCTTTTC
96802428 GGTAAACCTT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.08, C:0.26, G:0.03, T:0.64
Consensus pattern (15 bp):
TTTCTTTTCCATTCT
Found at i:96821937 original size:15 final size:14
Alignment explanation
Indices: 96821888--96821953 Score: 51
Period size: 15 Copynumber: 4.4 Consensus size: 14
96821878 CACACATTCT
96821888 TTTCTTCTCTTTTTC
1 TTTCTT-TCTTTTTC
*
96821903 TTTATTTCTTTTTAC
1 TTTCTTTCTTTTT-C
* *
96821918 GTTCTTTCTTCTTC
1 TTTCTTTCTTTTTC
* *
96821932 TTTTCTTATCATTTTA
1 -TTTCTT-TCTTTTTC
96821948 TTTCTT
1 TTTCTT
96821954 GTTTTGCTGC
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
14 8 0.20
15 27 0.68
16 5 0.12
ACGTcount: A:0.08, C:0.20, G:0.02, T:0.71
Consensus pattern (14 bp):
TTTCTTTCTTTTTC
Found at i:96828061 original size:30 final size:30
Alignment explanation
Indices: 96828025--96828086 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
96828015 TGATTCATCC
96828025 TTGGAAAAT-AAAATAAAGAAAAGGATGA-AA
1 TTGGAAAATGAAAA-AAAGAAAA-GATGATAA
* *
96828055 TTGGAAAGTGAAAAAAATAAAAGATGATAA
1 TTGGAAAATGAAAAAAAGAAAAGATGATAA
96828085 TT
1 TT
96828087 AATTAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 5 0.18
30 19 0.68
31 4 0.14
ACGTcount: A:0.60, C:0.00, G:0.19, T:0.21
Consensus pattern (30 bp):
TTGGAAAATGAAAAAAAGAAAAGATGATAA
Found at i:96834746 original size:21 final size:19
Alignment explanation
Indices: 96834701--96834755 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
96834691 AATTAATTTT
96834701 TTAAAAATTTAAAAA-ATTC
1 TTAAAAA-TTAAAAATATTC
**
96834720 AAAAAAATATAAAAATTATTC
1 TTAAAAAT-TAAAAA-TATTC
96834741 TTAAAAATTAAAAAT
1 TTAAAAATTAAAAAT
96834756 CATTAGAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
18 1 0.03
19 12 0.41
20 6 0.21
21 10 0.34
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.33
Consensus pattern (19 bp):
TTAAAAATTAAAAATATTC
Found at i:96838969 original size:10 final size:11
Alignment explanation
Indices: 96838944--96838969 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
96838934 TGATCCAATT
96838944 TTTTTACTTGA
1 TTTTTACTTGA
96838955 TTTTTACTTGA
1 TTTTTACTTGA
96838966 TTTT
1 TTTT
96838970 GACAATTGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (11 bp):
TTTTTACTTGA
Found at i:96840909 original size:17 final size:17
Alignment explanation
Indices: 96840882--96840914 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
96840872 TGTACTTTTA
96840882 TGAATTGTG-AATAAAG
1 TGAATTGTGAAATAAAG
96840898 TGAATATGTGAAATAAA
1 TGAAT-TGTGAAATAAA
96840915 AATGTAGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 4 0.27
18 6 0.40
ACGTcount: A:0.48, C:0.00, G:0.21, T:0.30
Consensus pattern (17 bp):
TGAATTGTGAAATAAAG
Found at i:96842699 original size:40 final size:40
Alignment explanation
Indices: 96842615--96842839 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
96842605 TTGAATGATG
* * * *
96842615 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
96842655 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
96842695 TCCGGGCTAA-CCCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
96842734 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
96842774 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
96842815 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
96842840 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 32 0.20
40 118 0.74
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:96842857 original size:80 final size:79
Alignment explanation
Indices: 96842654--96842872 Score: 196
Period size: 80 Copynumber: 2.8 Consensus size: 79
96842644 AAGTGACCAT
* ** * * *
96842654 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCT-AACCCCGAAGGCA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGAACGAG-TGACTAAATCC-GGTTAAATCCCGAAGGCA
*
96842716 TTGGTGTGAGTTACTAA
63 TTGGTGCGAGTTACTAA
* ** * *
96842733 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATT
*
96842798 TGTGCGAGTTACTATA
65 GGTGCGAGTTACTA-A
* * * *
96842814 A-CTGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
96842873 TACGTGATTT
Statistics
Matches: 118, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.02
79 56 0.47
80 58 0.49
81 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTG
GTGCGAGTTACTAA
Found at i:96850773 original size:79 final size:80
Alignment explanation
Indices: 96850638--96850861 Score: 294
Period size: 79 Copynumber: 2.8 Consensus size: 80
96850628 TTGAATGATG
* * * * * *
96850638 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAG-ACCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATT
*
96850701 TGTGCGAGATACTAAT
65 TGTGCGAGATACTAAA
* *
96850717 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
96850781 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* *
96850796 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
96850860 TG
65 TG
96850862 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
78 25 0.20
79 52 0.41
80 48 0.38
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:96850785 original size:40 final size:40
Alignment explanation
Indices: 96850638--96850861 Score: 294
Period size: 40 Copynumber: 5.7 Consensus size: 40
96850628 TTGAATGATG
* * * *
96850638 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
96850678 TCCGGACTAAG-ACCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
96850717 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
96850756 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
96850796 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
96850837 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
96850862 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 57 0.35
40 105 0.64
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:96853025 original size:22 final size:24
Alignment explanation
Indices: 96852982--96853025 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
96852972 TGATAAAATG
96852982 TTTTGATATAACAAATTAAAGTAT
1 TTTTGATATAACAAATTAAAGTAT
*
96853006 TTTTGA-ATAA-AAGTTAAAGT
1 TTTTGATATAACAAATTAAAGT
96853026 TTAACAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.45, C:0.02, G:0.11, T:0.41
Consensus pattern (24 bp):
TTTTGATATAACAAATTAAAGTAT
Found at i:96858344 original size:17 final size:17
Alignment explanation
Indices: 96858322--96858374 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
96858312 ATGTTAGTTC
96858322 AAACATATGATAAATAA
1 AAACATATGATAAATAA
* **
96858339 AAACAT-T--T-ACTGT
1 AAACATATGATAAATAA
96858352 AAACATATGATAAATAA
1 AAACATATGATAAATAA
96858369 AAACAT
1 AAACAT
96858375 TTACTGTACA
Statistics
Matches: 26, Mismatches: 6, Indels: 8
0.65 0.15 0.20
Matches are distributed among these distances:
13 8 0.31
14 2 0.08
16 2 0.08
17 14 0.54
ACGTcount: A:0.58, C:0.09, G:0.06, T:0.26
Consensus pattern (17 bp):
AAACATATGATAAATAA
Found at i:96858358 original size:30 final size:30
Alignment explanation
Indices: 96858322--96858382 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
96858312 ATGTTAGTTC
96858322 AAACATATGATAAATAAAAACATTTACTGT
1 AAACATATGATAAATAAAAACATTTACTGT
96858352 AAACATATGATAAATAAAAACATTTACTGT
1 AAACATATGATAAATAAAAACATTTACTGT
96858382 A
1 A
96858383 CAAACTACGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.54, C:0.10, G:0.07, T:0.30
Consensus pattern (30 bp):
AAACATATGATAAATAAAAACATTTACTGT
Found at i:96860080 original size:24 final size:25
Alignment explanation
Indices: 96860048--96860100 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 25
96860038 CTTTGGCCAA
96860048 CAACGCTTAGGATCCCTAGCTT-AT
1 CAACGCTTAGGATCCCTAGCTTGAT
*
96860072 CAACGCTTAGGATCCTTAGCTTGAT
1 CAACGCTTAGGATCCCTAGCTTGAT
96860097 CAAC
1 CAAC
96860101 TTTCTTTGCC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 21 0.78
25 6 0.22
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (25 bp):
CAACGCTTAGGATCCCTAGCTTGAT
Found at i:96863775 original size:40 final size:40
Alignment explanation
Indices: 96863592--96863761 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 40
96863582 TCCTCGTTCA
** * * * *
96863592 AATGCCTTCGGGACACAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
96863631 AATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
96863671 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
96863711 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
96863751 AAGGCCTTCGG
1 AATGCCTTCGG
96863762 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 32 0.28
40 83 0.72
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:96870528 original size:39 final size:40
Alignment explanation
Indices: 96870483--96870654 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
96870473 GCTCCTCGTT
* * *
96870483 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
96870523 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
96870562 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
96870602 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
96870642 CAAATGCCTTCGG
1 CAAATGCCTTCGG
96870655 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:96870583 original size:40 final size:39
Alignment explanation
Indices: 96870485--96870707 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
96870475 TCCTCGTTCA
* * * *
96870485 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
96870524 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
96870563 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
96870603 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
96870643 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
96870684 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
96870708 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:96870667 original size:80 final size:79
Alignment explanation
Indices: 96870483--96870707 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
96870473 GCTCCTCGTT
* * * * *
96870483 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
96870547 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
96870562 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
96870627 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
96870642 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
96870706 GA
63 GA
96870708 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:96870716 original size:41 final size:41
Alignment explanation
Indices: 96870639--96870716 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
96870629 TTTGTATCTC
* * *
96870639 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
96870680 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
96870717 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:96877488 original size:39 final size:40
Alignment explanation
Indices: 96877443--96877667 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
96877433 GCTCCTCGTT
* * * *
96877443 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
96877483 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
96877522 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
96877562 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
96877602 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
96877643 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
96877668 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
39 39 0.25
40 105 0.66
41 15 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:96877676 original size:41 final size:41
Alignment explanation
Indices: 96877599--96877676 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
96877589 TTTGTATCTC
* * *
96877599 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
96877640 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
96877677 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:96884216 original size:39 final size:40
Alignment explanation
Indices: 96884171--96884315 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
96884161 GCTCCTCGTT
* * * *
96884171 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
96884211 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
96884250 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
96884290 CAAAGGCCTTCGGGGCTTAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
96884316 ATTTGTNNNN
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 34 0.36
40 60 0.64
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:96894821 original size:40 final size:39
Alignment explanation
Indices: 96894723--96894945 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
96894713 TCCTCATTCA
* * ** * *
96894723 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
96894762 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
*
96894801 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
**
96894841 GAATGCCTTCGGGACTTAACCCGGATTT-AGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAAT-TCGCAC
* * * * * *
96894881 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAATTCGCAC
* *
96894922 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
96894946 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 39 0.25
40 108 0.69
41 8 0.05
42 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCAC
Found at i:96894879 original size:80 final size:79
Alignment explanation
Indices: 96894721--96894945 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
96894711 GCTCCTCATT
* * ** * *
96894721 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
96894786 TTTAACAATTCGCA
66 TTTAACAATTCGCA
*
96894800 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
**
96894865 ATTT-AGTATCTCGCA
65 ATTTAACAAT-TCGCA
* * * * * * *
96894880 CAAAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACAATGCCTTCGGGACTTAACCC
96894943 GGA
63 GGA
96894946 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
79 41 0.33
80 77 0.62
81 6 0.05
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAATTCGCA
Found at i:96894945 original size:120 final size:119
Alignment explanation
Indices: 96894723--96894945 Score: 288
Period size: 120 Copynumber: 1.9 Consensus size: 119
96894713 TCCTCATTCA
* * *
96894723 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
96894788 TAACAATTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
96894842 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* * *
96894906 TATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGA
96894946 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 38 0.43
120 42 0.48
121 8 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:96902681 original size:40 final size:40
Alignment explanation
Indices: 96902592--96902813 Score: 218
Period size: 40 Copynumber: 5.6 Consensus size: 40
96902582 TCCTCGTTCA
** * * *
96902592 AATGCCTTCGGGACACAGCCCGG-TTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
96902630 AATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
96902670 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
96902710 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
96902750 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
96902790 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
96902814 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
38 20 0.13
39 15 0.10
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:96902822 original size:41 final size:41
Alignment explanation
Indices: 96902745--96902822 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
96902735 TTAGTATCTC
* * *
96902745 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
96902786 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
96902823 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:96907156 original size:15 final size:13
Alignment explanation
Indices: 96907147--96907202 Score: 51
Period size: 15 Copynumber: 4.1 Consensus size: 13
96907137 AATATTATTA
96907147 AATTATATATTTT
1 AATTATATATTTT
96907160 AATTATAATATATTT
1 AATTAT-ATAT-TTT
* *
96907175 AATAATAATTATGTT
1 AATTAT-A-TATTTT
96907190 AATT-TATATTTT
1 AATTATATATTTT
96907202 A
1 A
96907203 TAGTATCATA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
12 6 0.17
13 7 0.19
14 5 0.14
15 15 0.42
16 3 0.08
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (13 bp):
AATTATATATTTT
Found at i:96907172 original size:16 final size:16
Alignment explanation
Indices: 96907151--96907193 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
96907141 TTATTAAATT
96907151 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
96907167 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
96907182 AT-TATGTTAATT
1 ATATATTTTAATT
96907194 TATATTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 2 0.09
15 16 0.70
16 5 0.22
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:96907233 original size:120 final size:120
Alignment explanation
Indices: 96907088--96907309 Score: 426
Period size: 120 Copynumber: 1.9 Consensus size: 120
96907078 GCAATAACAG
*
96907088 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAATAATATTATTAAATTAT
1 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATATTATTAAATTAT
96907153 ATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTA
66 ATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTA
*
96907208 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTAT
1 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATATTATTAAATTAT
96907273 ATATTTTAATTATAATATATTTAATAATAATTATGTT
66 ATATTTTAATTATAATATATTTAATAATAATTATGTT
96907310 TAAATATGAT
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 100 1.00
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (120 bp):
TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATATTATTAAATTAT
ATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTA
Found at i:96907275 original size:61 final size:60
Alignment explanation
Indices: 96907090--96907277 Score: 188
Period size: 61 Copynumber: 3.1 Consensus size: 60
96907080 AATAACAGTC
*
96907090 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAATAATATTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAA-AATTTTATTAAATT
* * * * * * * * * *
96907151 ATATATTTTAATTAT-AATATATTTA-ATAATAAT-TATG-TTAATTTATATTTTA-TAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAATAT-TGATT-ATTAAAATTTTATTA-AATT
96907210 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAA-AATTTTATTAAATT
96907271 ATATATT
1 ATATATT
96907278 TTAATTATAA
Statistics
Matches: 96, Mismatches: 21, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 28 0.29
60 26 0.27
61 36 0.38
62 3 0.03
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (60 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAAATTTTATTAAATT
Found at i:96907292 original size:16 final size:16
Alignment explanation
Indices: 96907271--96907312 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
96907261 TTATTAAATT
*
96907271 ATATATTTTAATTATA
1 ATATATTTTAATAATA
96907287 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
96907302 AT-TATGTTTAA
1 ATATAT-TTTAA
96907313 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:96907297 original size:15 final size:15
Alignment explanation
Indices: 96907262--96907303 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
96907252 TTAAGAATTT
*
96907262 TATTAAATTAT-ATA
1 TATTTAATTATAATA
96907276 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
96907290 TATTTAATAATAAT
1 TATTTAATTATAAT
96907304 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:96907538 original size:45 final size:44
Alignment explanation
Indices: 96907457--96907547 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 44
96907447 ACCTCTATTC
*
96907457 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCATTA
*** *
96907501 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCTATTCCATTA
96907546 CA
1 CA
96907548 CCTCTAATCC
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 16 0.39
45 25 0.61
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCATTA
Found at i:96907547 original size:16 final size:16
Alignment explanation
Indices: 96907526--96907595 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
96907516 TTGATTTGCT
*
96907526 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
96907542 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
96907558 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
* *
96907574 AATACAGCTCTAATCC
1 ATTACACCTCTAATCC
*
96907590 AATACA
1 ATTACA
96907596 GCGAACCAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.34, C:0.34, G:0.01, T:0.30
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:96911373 original size:12 final size:13
Alignment explanation
Indices: 96911351--96911376 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
96911341 TCAAGATATG
96911351 TTTCTTTTTTTTT
1 TTTCTTTTTTTTT
96911364 TTTCTTTTTTTTT
1 TTTCTTTTTTTTT
96911377 CTAAATTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (13 bp):
TTTCTTTTTTTTT
Found at i:96911836 original size:24 final size:24
Alignment explanation
Indices: 96911804--96911865 Score: 115
Period size: 24 Copynumber: 2.6 Consensus size: 24
96911794 CTATTAGTTC
96911804 ATAGTGCATTAAATCTCTTCATCG
1 ATAGTGCATTAAATCTCTTCATCG
96911828 ATAGTGCATTAAATCTCTTCATCG
1 ATAGTGCATTAAATCTCTTCATCG
*
96911852 ATAGTGCATCAAAT
1 ATAGTGCATTAAAT
96911866 ATTTTCCCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (24 bp):
ATAGTGCATTAAATCTCTTCATCG
Found at i:96912260 original size:24 final size:24
Alignment explanation
Indices: 96912233--96912284 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
96912223 TTAGCAAGTC
*
96912233 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
96912257 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
96912281 AAAT
1 AAAT
96912285 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:96912558 original size:24 final size:24
Alignment explanation
Indices: 96912524--96912576 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
96912514 TTTCTAGAAG
* *
96912524 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAGCATAATAT
*
96912548 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATGAGCATAATAT
96912572 ATTTA
1 ATTTA
96912577 AATTTGATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.49
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCATAATAT
Found at i:96912586 original size:24 final size:24
Alignment explanation
Indices: 96912524--96912587 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
96912514 TTTCTAGAAG
* * *
96912524 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGAATTTATTAGCATAATAT
*
96912548 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGAATTTATTAGCATAATAT
96912572 ATTTA-AATTTGATTAG
1 ATTTAGAATTT-ATTAG
96912588 AATTAGGTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 4 0.11
24 31 0.89
ACGTcount: A:0.38, C:0.03, G:0.11, T:0.48
Consensus pattern (24 bp):
ATTTAGAATTTATTAGCATAATAT
Found at i:96913275 original size:17 final size:17
Alignment explanation
Indices: 96913233--96913280 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
96913223 ATTTAATTCT
*
96913233 TATATTT-TAATTTTTA
1 TATATTTATAATATTTA
*
96913249 -ATATAATATAATATTTA
1 TATAT-TTATAATATTTA
96913266 TATATTTATAATATT
1 TATATTTATAATATT
96913281 ATTAATTAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 4 0.15
16 1 0.04
17 17 0.65
18 4 0.15
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TATATTTATAATATTTA
Found at i:96913859 original size:19 final size:18
Alignment explanation
Indices: 96913822--96913861 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
96913812 CTCAAATGCC
96913822 ATACAAATATATCATAAT
1 ATACAAATATATCATAAT
96913840 ATACAAATAATAGT-ATAAT
1 ATACAAAT-ATA-TCATAAT
96913859 ATA
1 ATA
96913862 ATATAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 8 0.40
19 11 0.55
20 1 0.05
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (18 bp):
ATACAAATATATCATAAT
Found at i:96917050 original size:5 final size:5
Alignment explanation
Indices: 96917042--96917082 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
96917032 AATATTAAGC
* * *
96917042 AAAAT AAAAT AAAAT AAAAT AAAAG AAAGT AAAAA AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A
96917083 CCTTTTGAAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:96917932 original size:21 final size:21
Alignment explanation
Indices: 96917873--96918149 Score: 99
Period size: 26 Copynumber: 12.3 Consensus size: 21
96917863 ATATTAATAT
96917873 TATATTATGTATATTATTTTT-
1 TATATTATGTATA-TATTTTTA
* * *
96917894 TAAAATAT-TATATTTTTTTA
1 TATATTATGTATATATTTTTA
*
96917914 TATGTTATGTATATATTTTTA
1 TATATTATGTATATATTTTTA
96917935 -ATATCATAT-TAGTCATATATTTTA
1 TATAT--TATGTA-T-ATAT-TTTTA
96917959 TTATATTATGTATATATTTTTAATAA
1 -TATATTATGTATATA-TTTT--T-A
*
96917985 CTATATTATGTATGTATTTTTAACA
1 -TATATTATGTATATATTTTT---A
* * *
96918010 CTATATTACGTACATGCTTTTAATA
1 -TATATTATGTATAT-ATTTT--TA
96918035 TCATTATTATGTATATATTTTTAA
1 T-A-TATTATGTATATATTTTT-A
*
96918059 TATATATATGTGTATATTTATGTA
1 TATAT-TATGTATATATTT-T-TA
* *
96918083 -ATACTAT-TA-ATAGTTGTTTT
1 TATATTATGTATATA-TT-TTTA
*
96918103 TAATATTAT-TAT-TATTATTTC
1 T-ATATTATGTATATATT-TTTA
96918124 TA-A-TATGTATATATTATTTA
1 TATATTATGTATATATT-TTTA
96918144 TATATT
1 TATATT
96918150 TTTAATACTA
Statistics
Matches: 196, Mismatches: 26, Indels: 67
0.68 0.09 0.23
Matches are distributed among these distances:
18 3 0.02
19 10 0.05
20 27 0.14
21 30 0.15
22 22 0.11
23 28 0.14
24 15 0.08
25 27 0.14
26 33 0.17
28 1 0.01
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.56
Consensus pattern (21 bp):
TATATTATGTATATATTTTTA
Found at i:96917989 original size:26 final size:26
Alignment explanation
Indices: 96917918--96918077 Score: 137
Period size: 26 Copynumber: 6.5 Consensus size: 26
96917908 TTTTTATATG
*
96917918 TTATGTATATATTTTTAATATC-ATA
1 TTATGTATATATTTTTAATAACTATA
96917943 TTA-GTCATATA-TTTT-AT---TATA
1 TTATGT-ATATATTTTTAATAACTATA
96917964 TTATGTATATATTTTTAATAACTATA
1 TTATGTATATATTTTTAATAACTATA
* *
96917990 TTATGTATGTATTTTTAA-CACTATA
1 TTATGTATATATTTTTAATAACTATA
* * ** *
96918015 TTACGTACATGCTTTTAATATC-ATTA
1 TTATGTATATATTTTTAATAACTA-TA
96918041 TTATGTATATATTTTTAAT-A-TATA
1 TTATGTATATATTTTTAATAACTATA
*
96918065 -TATGTGTATATTT
1 TTATGTATATATTT
96918078 ATGTAATACT
Statistics
Matches: 109, Mismatches: 15, Indels: 24
0.74 0.10 0.16
Matches are distributed among these distances:
21 11 0.10
22 6 0.06
23 16 0.15
24 8 0.07
25 29 0.27
26 39 0.36
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (26 bp):
TTATGTATATATTTTTAATAACTATA
Done.