Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 286 of 373
Found at i:96918085 original size:51 final size:48
Alignment explanation
Indices: 96917902--96918198 Score: 201
Period size: 47 Copynumber: 6.2 Consensus size: 48
96917892 TTTAAAATAT
* *
96917902 TATAT-TTTTTTATATGTTATGTATATATTTTTAATATCA-TATTA-G
1 TATATATTTTTAATATATTATGTATATATTTTTAATATCATTATTATG
* *
96917947 TCATATA-TTTTATTATATTATGTATATATTTTTAATAAC-TATATTATG
1 T-ATATATTTTTAATATATTATGTATATATTTTTAATATCAT-TATTATG
* * * **
96917995 TATGTATTTTTAACACTATATTACGTACATGCTTTTAATATCATTATTATG
1 TATATATTTTT-A-A-TATATTATGTATATATTTTTAATATCATTATTATG
* *
96918046 TATATATTTTTAATATATATATGTGTATATTTATGTAATA-C--TATTA-A
1 TATATATTTTTAATATAT-TATGTATATATTT-T-TAATATCATTATTATG
* * * *
96918093 TAGT-TGTTTTTAATATTATTAT-TAT-TATTTCTAATATGTATATATTATT
1 TA-TATATTTTTAATA-TATTATGTATATATTTTTAATAT-CAT-TATTATG
* *
96918142 TATATATTTTT-A-ATACTATGTATATACCTTTTAATA-CTATTATTATG
1 TATATATTTTTAATATATTATGTATATA-TTTTTAATATC-ATTATTATG
*
96918189 TTTATATTTT
1 TATATATTTT
96918199 AGTATATATA
Statistics
Matches: 196, Mismatches: 30, Indels: 50
0.71 0.11 0.18
Matches are distributed among these distances:
43 5 0.03
45 6 0.03
46 39 0.20
47 43 0.22
48 31 0.16
49 25 0.13
50 3 0.02
51 43 0.22
52 1 0.01
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.56
Consensus pattern (48 bp):
TATATATTTTTAATATATTATGTATATATTTTTAATATCATTATTATG
Found at i:96918204 original size:70 final size:72
Alignment explanation
Indices: 96918026--96918207 Score: 169
Period size: 73 Copynumber: 2.5 Consensus size: 72
96918016 TACGTACATG
* * *
96918026 CTTTTAATATCATTATTATGTATATATTTTTAATATATA-TATGTGTATATTTATGTAATACTAT
1 CTTTTAATAT-ATTATTATGTTTATA-TTTTAGTATATATTATGTATATATTTATGTAATACTAT
**
96918090 TAATAGTTG
64 TAATAGTAC
* * * * * *
96918099 TTTTTAATATTATTATTATTATTTCTAATAT-GTATATATTATTTATATATTT-T-TAATACTAT
1 CTTTTAATA-TATTATTA-TGTTTATATTTTAGTATATATTATGTATATATTTATGTAATACTAT
96918161 GT-ATA-TAC
64 -TAATAGTAC
96918169 CTTTTAATACTATTATTATGTTTATATTTTAGTATATAT
1 CTTTTAATA-TATTATTATGTTTATATTTTAGTATATAT
96918208 ACGTATGTAT
Statistics
Matches: 87, Mismatches: 17, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
69 8 0.09
70 25 0.29
71 12 0.14
72 8 0.09
73 28 0.32
74 6 0.07
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (72 bp):
CTTTTAATATATTATTATGTTTATATTTTAGTATATATTATGTATATATTTATGTAATACTATTA
ATAGTAC
Found at i:96922116 original size:22 final size:22
Alignment explanation
Indices: 96922091--96922135 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
96922081 ATTCATGACT
96922091 AACATTTATTCGTCATTTATTC
1 AACATTTATTCGTCATTTATTC
* *
96922113 AACATTTGTTTGTCATTTATTC
1 AACATTTATTCGTCATTTATTC
96922135 A
1 A
96922136 TTCATTCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.07, T:0.51
Consensus pattern (22 bp):
AACATTTATTCGTCATTTATTC
Found at i:96930560 original size:74 final size:74
Alignment explanation
Indices: 96930434--96930639 Score: 272
Period size: 74 Copynumber: 2.8 Consensus size: 74
96930424 CTGATATTTT
* * * * * *
96930434 TTTTTTATTTCAGTTATTCCAATAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
96930499 GCTGAGGTA
66 GCTGAGGTA
* * *
96930508 TTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGGGTTGAGCCTCAGGTCAC
1 TTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
96930573 GTTGAGGTA
66 GCTGAGGTA
* *
96930582 TTTTTAA-TTCT-ATTTTCAAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TTTTTAATTTCTGTTTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
96930640 GGGTCTCACG
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
72 5 0.04
73 4 0.03
74 108 0.92
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (74 bp):
TTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
GCTGAGGTA
Found at i:96930765 original size:90 final size:94
Alignment explanation
Indices: 96930602--96930869 Score: 321
Period size: 101 Copynumber: 2.8 Consensus size: 94
96930592 TATTTTCAAA
* * * * *
96930602 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCTCACGTCGAGGTACTTTCAATT
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCACACGTTGAGGTATTTTCAATT
*
96930667 TCT-GTTTTCAA-TTTTT-A-CGTTTTTC
66 TCTATTTTTCAATTTTTTAATCGTTTTTC
* *
96930692 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCTTCGGGTCACACGTTGAGGT-TTTTCAACT
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCACACGTTGAGGTATTTTCAATT
*
96930756 TCTATTTTTCAAATTCTGTTTTTAATTTTTGTTTTTC
66 TCTATTTTTC-AA---T-TTTTTAA---TCGTTTTTC
* * *
96930793 AAAAATCAACTTATACTGCAAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCACACGTTGAGGTATTTTCAATT
96930858 TCTATTTTTCAA
66 TCTATTTTTCAA
96930870 AAAAATCAAT
Statistics
Matches: 151, Mismatches: 14, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
89 10 0.07
90 55 0.36
91 2 0.01
96 5 0.03
97 1 0.01
101 60 0.40
102 18 0.12
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.39
Consensus pattern (94 bp):
AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCACACGTTGAGGTATTTTCAATT
TCTATTTTTCAATTTTTTAATCGTTTTTC
Found at i:96930836 original size:101 final size:103
Alignment explanation
Indices: 96930659--96930870 Score: 338
Period size: 101 Copynumber: 2.1 Consensus size: 103
96930649 GTCGAGGTAC
* *
96930659 TTTCAATTTCTGTTTTCAATTTTTACGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTG
1 TTTCAAATTCTGTTTTCAATTTTTA-GTTTTTCAAAAATCAACTCATACTGCAAGAGGTGAGTTG
* *
96930724 AGCTTCGGGTCACACGTTGAGGT-TTTTCAACTTCTATT
65 AGCCTCGGGTCACACGCTGAGGTATTTTCAACTTCTATT
* *
96930762 TTTCAAATTCTGTTTTTAATTTTT-GTTTTTCAAAAATCAACTTATACTGCAAGAGGTGAGTTGA
1 TTTCAAATTCTGTTTTCAATTTTTAGTTTTTCAAAAATCAACTCATACTGCAAGAGGTGAGTTGA
*
96930826 GCCTCGGGTCACACGCTGAGGTATTTTCAATTTCTATT
66 GCCTCGGGTCACACGCTGAGGTATTTTCAACTTCTATT
96930864 TTTCAAA
1 TTTCAAA
96930871 AAAATCAATC
Statistics
Matches: 101, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
101 58 0.57
102 21 0.21
103 22 0.22
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.42
Consensus pattern (103 bp):
TTTCAAATTCTGTTTTCAATTTTTAGTTTTTCAAAAATCAACTCATACTGCAAGAGGTGAGTTGA
GCCTCGGGTCACACGCTGAGGTATTTTCAACTTCTATT
Found at i:96930986 original size:268 final size:264
Alignment explanation
Indices: 96930508--96931005 Score: 673
Period size: 268 Copynumber: 1.9 Consensus size: 264
96930498 CGCTGAGGTA
* * *
96930508 TTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGGGTTGAGCCTCAGGTCAC
1 TTTTTAATTTCTGTTTTTCAAAAAATCAACTCATACTGCAAGAGGTGAGTTGAGCCTCAGGTCAC
* * * *
96930573 GTTGAGGTATTTTTAATTCTATTTTCAAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCC
66 GCTGAGGTATTTTCAATTCTATTTTCAAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCC
* * *
96930638 TCGGGTCTCACGTCGAGGTACTTTCAATTTCTGTTTTCAATTTTTACGTTTTTCAAAAATCAACT
131 TCGGG-CACACGTCGAGGTACTTTCAATTTCTGTTTTCAAATTCTA-GTTTTTCAAAAATCAACT
*
96930703 CATATTGCAAGAGGTGAGTTGAGCTTCGGGTCACACGTTGAGGTTTTTCAACTTCTATTTTTCAA
194 CATATTGCAAGAGGTGAGTTGAGCCTCGGGTCACACGTTGAGGTTTTTCAACTTCTATTTTTCAA
96930768 ATTCTG
259 ATTCTG
* * *
96930774 TTTTTAATTTTTGTTTTTC-AAAAATCAACTTATACTGCAAGAGGTGAGTTGAGCCTCGGGTCAC
1 TTTTTAATTTCTGTTTTTCAAAAAATCAACTCATACTGCAAGAGGTGAGTTGAGCCTCAGGT--C
*
96930838 ACGCTGAGGTATTTTCAATTTCTATTTTTC-AAAAAAATCAATCTCATATTGCGAAATGTGAGTT
64 ACGCTGAGGTATTTTCAA-TTCTA-TTTTCAAAAAAAATCAA-CTCATATTGCGAAAGGTGAGTT
* * *
96930902 GAGCCTCGGG-ACACG-CTGAGGTATTTTCAGTTTTTGTTTTTCAAATTCT-GTTTTTATCAAAA
126 GAGCCTCGGGCACACGTC-GAGGTACTTTCAATTTCTG-TTTTCAAATTCTAG-TTTT-TCAAAA
* * *
96930964 GTCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
187 ATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCACA
96931006 TGCCGAGGAT
Statistics
Matches: 202, Mismatches: 21, Indels: 16
0.85 0.09 0.07
Matches are distributed among these distances:
265 37 0.18
266 20 0.10
267 41 0.20
268 69 0.34
269 35 0.17
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.38
Consensus pattern (264 bp):
TTTTTAATTTCTGTTTTTCAAAAAATCAACTCATACTGCAAGAGGTGAGTTGAGCCTCAGGTCAC
GCTGAGGTATTTTCAATTCTATTTTCAAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCC
TCGGGCACACGTCGAGGTACTTTCAATTTCTGTTTTCAAATTCTAGTTTTTCAAAAATCAACTCA
TATTGCAAGAGGTGAGTTGAGCCTCGGGTCACACGTTGAGGTTTTTCAACTTCTATTTTTCAAAT
TCTG
Found at i:96932672 original size:22 final size:20
Alignment explanation
Indices: 96932647--96932702 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 20
96932637 TTAATTTTAA
96932647 TATTATTTATACTATTATATTT
1 TATTATTTAT--TATTATATTT
96932669 TATTACTGTTATTATTATATTT
1 TATTA-T-TTATTATTATATTT
*
96932691 TTTTATTTATTA
1 TATTATTTATTA
96932703 GCATTTCATT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
20 6 0.19
21 1 0.03
22 19 0.61
23 1 0.03
24 4 0.13
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.66
Consensus pattern (20 bp):
TATTATTTATTATTATATTT
Found at i:96932891 original size:15 final size:16
Alignment explanation
Indices: 96932871--96932900 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
96932861 TATATTATGT
96932871 ATATTAT-TTTTTTAA
1 ATATTATATTTTTTAA
96932886 ATATTATATTTTTTA
1 ATATTATATTTTTTA
96932901 TATGTTATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
ATATTATATTTTTTAA
Found at i:96932921 original size:21 final size:21
Alignment explanation
Indices: 96932861--96933136 Score: 99
Period size: 26 Copynumber: 12.3 Consensus size: 21
96932851 ATATTAATAT
*
96932861 TATATTATGTATATTATTTTTT
1 TATATTATGTATA-TATTTTTA
*
96932883 TA-AATAT-TATAT-TTTTTA
1 TATATTATGTATATATTTTTA
*
96932901 TATGTTATGTATATATTTTTA
1 TATATTATGTATATATTTTTA
96932922 -ATATCATAT-TAGTCATATATTTTA
1 TATAT--TATGTA-T-ATAT-TTTTA
96932946 TTATATTATGTATATATTTTTAATAA
1 -TATATTATGTATATA-TTTT--T-A
*
96932972 CTATATTATGTATGTATTTTTAACA
1 -TATATTATGTATATATTTTT---A
* * *
96932997 CTATATTACGTACATGCTTTTAATA
1 -TATATTATGTATAT-ATTTT--TA
96933022 TCATTATTATGTATATATTTTTAA
1 T-A-TATTATGTATATATTTTT-A
*
96933046 TATATATATGTGTATATTTATGTA
1 TATAT-TATGTATATATTT-T-TA
* *
96933070 -ATACTAT-TA-ATAGTTGTTTT
1 TATATTATGTATATA-TT-TTTA
*
96933090 TAATATTAT-TAT-TATTATTTC
1 T-ATATTATGTATATATT-TTTA
96933111 TA-A-TATGTATATATTATTTA
1 TATATTATGTATATATT-TTTA
96933131 TATATT
1 TATATT
96933137 TTTAATACTA
Statistics
Matches: 196, Mismatches: 23, Indels: 70
0.68 0.08 0.24
Matches are distributed among these distances:
18 10 0.05
19 8 0.04
20 27 0.14
21 23 0.12
22 24 0.12
23 28 0.14
24 15 0.08
25 27 0.14
26 33 0.17
28 1 0.01
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.57
Consensus pattern (21 bp):
TATATTATGTATATATTTTTA
Found at i:96932976 original size:26 final size:26
Alignment explanation
Indices: 96932905--96933064 Score: 137
Period size: 26 Copynumber: 6.5 Consensus size: 26
96932895 TTTTTATATG
*
96932905 TTATGTATATATTTTTAATATC-ATA
1 TTATGTATATATTTTTAATAACTATA
96932930 TTA-GTCATATA-TTTT-AT---TATA
1 TTATGT-ATATATTTTTAATAACTATA
96932951 TTATGTATATATTTTTAATAACTATA
1 TTATGTATATATTTTTAATAACTATA
* *
96932977 TTATGTATGTATTTTTAA-CACTATA
1 TTATGTATATATTTTTAATAACTATA
* * ** *
96933002 TTACGTACATGCTTTTAATATC-ATTA
1 TTATGTATATATTTTTAATAACTA-TA
96933028 TTATGTATATATTTTTAAT-A-TATA
1 TTATGTATATATTTTTAATAACTATA
*
96933052 -TATGTGTATATTT
1 TTATGTATATATTT
96933065 ATGTAATACT
Statistics
Matches: 109, Mismatches: 15, Indels: 24
0.74 0.10 0.16
Matches are distributed among these distances:
21 11 0.10
22 6 0.06
23 16 0.15
24 8 0.07
25 29 0.27
26 39 0.36
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (26 bp):
TTATGTATATATTTTTAATAACTATA
Found at i:96933072 original size:51 final size:48
Alignment explanation
Indices: 96932890--96933185 Score: 206
Period size: 47 Copynumber: 6.2 Consensus size: 48
96932880 TTTTAAATAT
* *
96932890 TATATTTTTTATATGTTATGTATATATTTTTAATATCA-TATTA-GTCA
1 TATATTTTTAATATATTATGTATATATTTTTAATATCATTATTATGT-A
* *
96932937 TATA-TTTTATTATATTATGTATATATTTTTAATAAC-TATATTATGTA
1 TATATTTTTAATATATTATGTATATATTTTTAATATCAT-TATTATGTA
* * * **
96932984 TGTATTTTTAACACTATATTACGTACATGCTTTTAATATCATTATTATGTA
1 TATATTTTT-A-A-TATATTATGTATATATTTTTAATATCATTATTATGTA
* *
96933035 TATATTTTTAATATATATATGTGTATATTTATGTAATA-C--TATTA-ATA
1 TATATTTTTAATATAT-TATGTATATATTT-T-TAATATCATTATTATGTA
* * * *
96933082 GT-TGTTTTTAATATTATTAT-TAT-TATTTCTAATATGTATATATTATTTA
1 -TATATTTTTAATA-TATTATGTATATATTTTTAATAT-CAT-TATTATGTA
* * *
96933131 TATATTTTT-A-ATACTATGTATATACCTTTTAATA-CTATTATTATGTT
1 TATATTTTTAATATATTATGTATATA-TTTTTAATATC-ATTATTATGTA
96933178 TATATTTT
1 TATATTTT
96933186 AGTATATATA
Statistics
Matches: 195, Mismatches: 30, Indels: 48
0.71 0.11 0.18
Matches are distributed among these distances:
43 5 0.03
45 5 0.03
46 35 0.18
47 47 0.24
48 31 0.16
49 25 0.13
50 3 0.02
51 43 0.22
52 1 0.01
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.56
Consensus pattern (48 bp):
TATATTTTTAATATATTATGTATATATTTTTAATATCATTATTATGTA
Found at i:96933191 original size:70 final size:72
Alignment explanation
Indices: 96933013--96933194 Score: 169
Period size: 73 Copynumber: 2.5 Consensus size: 72
96933003 TACGTACATG
* * *
96933013 CTTTTAATATCATTATTATGTATATATTTTTAATATATA-TATGTGTATATTTATGTAATACTAT
1 CTTTTAATAT-ATTATTATGTTTATA-TTTTAGTATATATTATGTATATATTTATGTAATACTAT
**
96933077 TAATAGTTG
64 TAATAGTAC
* * * * * *
96933086 TTTTTAATATTATTATTATTATTTCTAATAT-GTATATATTATTTATATATTT-T-TAATACTAT
1 CTTTTAATA-TATTATTA-TGTTTATATTTTAGTATATATTATGTATATATTTATGTAATACTAT
96933148 GT-ATA-TAC
64 -TAATAGTAC
96933156 CTTTTAATACTATTATTATGTTTATATTTTAGTATATAT
1 CTTTTAATA-TATTATTATGTTTATATTTTAGTATATAT
96933195 ACGTATGTAT
Statistics
Matches: 87, Mismatches: 17, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
69 8 0.09
70 25 0.29
71 12 0.14
72 8 0.09
73 28 0.32
74 6 0.07
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (72 bp):
CTTTTAATATATTATTATGTTTATATTTTAGTATATATTATGTATATATTTATGTAATACTATTA
ATAGTAC
Found at i:96935161 original size:315 final size:315
Alignment explanation
Indices: 96934589--96935212 Score: 1106
Period size: 315 Copynumber: 2.0 Consensus size: 315
96934579 ACTCTGAGGA
* * *
96934589 TCGTACCCAATGGAGGCTAGTACTAAATTAATTCTAACCTAAATGCAAATAGATTTAATTAGTAC
1 TCGTACCCAATGGAGGCTAGCACTAAATTAATTCTAACCTAAACGCAAATAGATCTAATTAGTAC
*
96934654 TTTAAATAAATCATATTACGATAAAATATAAATAGATTTTTTTAGGGTTTTATAAATAAAGGAAC
66 TTTAAATAAATCATATTACGATAAAATATAAATAGAATTTTTTAGGGTTTTATAAATAAAGGAAC
*
96934719 AAAATAACATAAATGAAGAAAACTAACTTATAAACTCTATCAAATCTAGCTATGGGTGATTAGCT
131 AAAATAACATAAATGAAGAAAACTAACTTATAAACTCTATCAAATCTAGCTATAGGTGATTAGCT
96934784 CGCTTTGGTGGTCATAACTAATTCCTATTTTTGAGTTTCTATTAAATTAACTAGTCATTAACTTA
196 CGCTTTGGTGGTCATAACTAATTCCTATTTTTGAGTTTCTATTAAATTAACTAGTCATTAACTTA
* *
96934849 GTAGGATTTTTTGATCTTCCACTAAACTAATGAGTCGACAAGAACTATTGATCTC
261 GCAGGATTTTTCGATCTTCCACTAAACTAATGAGTCGACAAGAACTATTGATCTC
96934904 TCGTACCCAATGGAGGCTAGCACTAAATTAATTCTAACCTAAACGCAAATAGATCTAATTAGTAC
1 TCGTACCCAATGGAGGCTAGCACTAAATTAATTCTAACCTAAACGCAAATAGATCTAATTAGTAC
* * *
96934969 TTTAAATAAATCATATTACGATAAAATATAAATAGAATTTTTTGGGGTTTTATAAATAAATGATC
66 TTTAAATAAATCATATTACGATAAAATATAAATAGAATTTTTTAGGGTTTTATAAATAAAGGAAC
*
96935034 AAAATAACATAAATGAAGAAAACTAACTTATAAATTCTATCAAATCTAGCTATAGGTGATTAGCT
131 AAAATAACATAAATGAAGAAAACTAACTTATAAACTCTATCAAATCTAGCTATAGGTGATTAGCT
*
96935099 CGCTTTGGTGGTCATAACTAATTTCTATTTTTG-GCTTTCTATTAAATTAACTAGTCATTAACTT
196 CGCTTTGGTGGTCATAACTAATTCCTATTTTTGAG-TTTCTATTAAATTAACTAGTCATTAACTT
* *
96935163 AGCAGGATTTTTCGATCTTCCACTAAACTAATGAGTCTATAAGAACTATT
260 AGCAGGATTTTTCGATCTTCCACTAAACTAATGAGTCGACAAGAACTATT
96935213 TATTTCTTGA
Statistics
Matches: 294, Mismatches: 14, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
314 1 0.00
315 293 1.00
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (315 bp):
TCGTACCCAATGGAGGCTAGCACTAAATTAATTCTAACCTAAACGCAAATAGATCTAATTAGTAC
TTTAAATAAATCATATTACGATAAAATATAAATAGAATTTTTTAGGGTTTTATAAATAAAGGAAC
AAAATAACATAAATGAAGAAAACTAACTTATAAACTCTATCAAATCTAGCTATAGGTGATTAGCT
CGCTTTGGTGGTCATAACTAATTCCTATTTTTGAGTTTCTATTAAATTAACTAGTCATTAACTTA
GCAGGATTTTTCGATCTTCCACTAAACTAATGAGTCGACAAGAACTATTGATCTC
Found at i:96936018 original size:25 final size:25
Alignment explanation
Indices: 96935982--96936029 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
96935972 GTTTTCTTTG
*
96935982 TTTTATTATCCCAATTAAACTCTAT
1 TTTTATTATCCCAACTAAACTCTAT
*
96936007 TTTTAGTT-TCCCACCTAAACTCT
1 TTTTA-TTATCCCAACTAAACTCT
96936030 GATTAACCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.27, C:0.25, G:0.02, T:0.46
Consensus pattern (25 bp):
TTTTATTATCCCAACTAAACTCTAT
Found at i:96945126 original size:29 final size:31
Alignment explanation
Indices: 96945055--96945126 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 31
96945045 TTTCACTAGT
* * * *
96945055 TTTTAGTTATTTTATAATGTTTTCTTTATTA
1 TTTTATTTATTATATAATGTTATCTTTAATA
96945086 TTTTATTT-TTATATAA-GTTATC-TTAATA
1 TTTTATTTATTATATAATGTTATCTTTAATA
*
96945114 TTTTTTTTATTAT
1 TTTTATTTATTAT
96945127 TTATGTAAGT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 12 0.34
29 9 0.26
30 7 0.20
31 7 0.20
ACGTcount: A:0.25, C:0.03, G:0.04, T:0.68
Consensus pattern (31 bp):
TTTTATTTATTATATAATGTTATCTTTAATA
Found at i:96947608 original size:12 final size:12
Alignment explanation
Indices: 96947591--96947617 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
96947581 ATTCCGAAGT
96947591 ATATATATATAC
1 ATATATATATAC
96947603 ATATATATATAC
1 ATATATATATAC
96947615 ATA
1 ATA
96947618 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:96948129 original size:27 final size:27
Alignment explanation
Indices: 96948098--96948275 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
96948088 TAAATTGTAC
96948098 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
96948125 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
96948151 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
96948179 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
96948207 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
96948234 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
96948261 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
96948276 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:96948212 original size:82 final size:81
Alignment explanation
Indices: 96948099--96948254 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
96948089 AAATTGTACA
* *
96948099 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
96948163 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
96948180 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
96948245 TGCGAGTTGA
65 TGCGAATTGA
96948255 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:96948266 original size:82 final size:81
Alignment explanation
Indices: 96948095--96948275 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
96948085 GATTAAATTG
* *
96948095 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
96948160 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
96948176 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
96948240 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
96948258 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
96948276 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:96955721 original size:12 final size:12
Alignment explanation
Indices: 96955704--96955730 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
96955694 ATTCCGAAGT
96955704 ATATATATATAC
1 ATATATATATAC
96955716 ATATATATATAC
1 ATATATATATAC
96955728 ATA
1 ATA
96955731 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:96956242 original size:27 final size:27
Alignment explanation
Indices: 96956211--96956388 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
96956201 TAAATTGTAC
96956211 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
96956238 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
96956264 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
96956292 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
96956320 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
96956347 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
96956374 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
96956389 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:96956325 original size:82 final size:81
Alignment explanation
Indices: 96956212--96956367 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
96956202 AAATTGTACA
* *
96956212 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
96956276 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
96956293 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
96956358 TGCGAGTTGA
65 TGCGAATTGA
96956368 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:96956379 original size:82 final size:81
Alignment explanation
Indices: 96956208--96956388 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
96956198 GATTAAATTG
* *
96956208 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
96956273 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
96956289 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
96956353 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
96956371 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
96956389 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:96976594 original size:21 final size:20
Alignment explanation
Indices: 96976570--96976610 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
96976560 AGATAATATA
*
96976570 TATTCCATTTATGCTTGTTTT
1 TATT-CATTTATACTTGTTTT
*
96976591 TATTCTTTTATACTTGTTTT
1 TATTCATTTATACTTGTTTT
96976611 ATTTATTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.15, C:0.12, G:0.07, T:0.66
Consensus pattern (20 bp):
TATTCATTTATACTTGTTTT
Found at i:96985334 original size:29 final size:29
Alignment explanation
Indices: 96985296--96985355 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
96985286 ATGAATATAT
*
96985296 TGTGATTTGGGCCGGATGGGCCATATAAA
1 TGTGAATTGGGCCGGATGGGCCATATAAA
* *
96985325 TGTGAATTGGGCCTGATGGGCCATATGAA
1 TGTGAATTGGGCCGGATGGGCCATATAAA
96985354 TG
1 TG
96985356 AGTTTGGGCC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.23, C:0.13, G:0.35, T:0.28
Consensus pattern (29 bp):
TGTGAATTGGGCCGGATGGGCCATATAAA
Found at i:96986242 original size:37 final size:39
Alignment explanation
Indices: 96986185--96986277 Score: 111
Period size: 39 Copynumber: 2.4 Consensus size: 39
96986175 ATAGTGGGCG
* * *
96986185 ACATTATATAGTATAAATATGT-TT-TTATATTAAATATGT
1 ACATTATAT-GTATATATATGTGTTATAATAATAAA-ATGT
96986224 ACATT-TATGTATATATATGTGTTATAATAATAAAATGT
1 ACATTATATGTATATATATGTGTTATAATAATAAAATGT
*
96986262 ATATTATATGTATATA
1 ACATTATATGTATATA
96986278 ATATAAGAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
37 11 0.23
38 13 0.28
39 23 0.49
ACGTcount: A:0.42, C:0.02, G:0.09, T:0.47
Consensus pattern (39 bp):
ACATTATATGTATATATATGTGTTATAATAATAAAATGT
Found at i:96999883 original size:25 final size:26
Alignment explanation
Indices: 96999834--96999883 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
96999824 CTTTTCGTTT
** *
96999834 TCTTTTCATTTTTAGTTTAGGTTTTC
1 TCTTTTCATTTTTAGAGTAGATTTTC
96999860 TCTTTT-ATTTTTAGAGTAGATTTT
1 TCTTTTCATTTTTAGAGTAGATTTT
96999884 ATTATTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.16, C:0.08, G:0.12, T:0.64
Consensus pattern (26 bp):
TCTTTTCATTTTTAGAGTAGATTTTC
Found at i:97005854 original size:55 final size:56
Alignment explanation
Indices: 97005746--97005872 Score: 154
Period size: 55 Copynumber: 2.3 Consensus size: 56
97005736 ATTAGGGTTT
* * *
97005746 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGATAAGGTTTATAAGGCA
* *
97005801 AAGGATACCATGTAAGACCATGTCAAGACATGG-CATTGATAA-GTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGATAAGGTT--TATAAGGCA
*
97005857 AAGG-TCCCATGTAAGA
1 AAGGATACCATGTAAGA
97005873 TGTTCATAAG
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
53 3 0.05
54 7 0.11
55 49 0.78
56 4 0.06
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (56 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGATAAGGTTTATAAGGCA
Found at i:97006188 original size:16 final size:16
Alignment explanation
Indices: 97006167--97006197 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97006157 ATAAATTAAA
97006167 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
97006183 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
97006198 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:97011915 original size:17 final size:16
Alignment explanation
Indices: 97011880--97011940 Score: 61
Period size: 17 Copynumber: 3.7 Consensus size: 16
97011870 ATAGATACAA
*
97011880 TATTTTTATTTCT-TT
1 TATTTTTATTTTTGTT
97011895 TATTTTTAATTTTTGTT
1 TATTTTT-ATTTTTGTT
*
97011912 TATTTTTGTTTATTTGTT
1 TATTTTT-ATT-TTTGTT
*
97011930 TATTTTCATTT
1 TATTTTTATTT
97011941 CATTTTGTAG
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
15 7 0.18
16 6 0.16
17 13 0.34
18 12 0.32
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.77
Consensus pattern (16 bp):
TATTTTTATTTTTGTT
Found at i:97011917 original size:22 final size:21
Alignment explanation
Indices: 97011880--97011940 Score: 56
Period size: 22 Copynumber: 3.0 Consensus size: 21
97011870 ATAGATACAA
* *
97011880 TATTTTTATTTCTTTTATTTT
1 TATTTTTGTTTATTTTATTTT
*
97011901 TAATTTTTGTTTATTTT-TGTT
1 T-ATTTTTGTTTATTTTATTTT
97011922 TA--TTTGTTTATTTTCATTT
1 TATTTTTGTTTATTTT-ATTT
97011941 CATTTTGTAG
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
18 12 0.36
20 3 0.09
21 5 0.15
22 13 0.39
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.77
Consensus pattern (21 bp):
TATTTTTGTTTATTTTATTTT
Found at i:97011918 original size:11 final size:10
Alignment explanation
Indices: 97011880--97011935 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
97011870 ATAGATACAA
*
97011880 TATTTTTATT
1 TATTTTTGTT
* *
97011890 TCTTTTATTTT
1 TATTTT-TGTT
97011901 TAATTTTTGTT
1 T-ATTTTTGTT
97011912 TATTTTTGTT
1 TATTTTTGTT
97011922 TA--TTTGTT
1 TATTTTTGTT
97011930 TATTTT
1 TATTTT
97011936 CATTTCATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 8 0.21
10 18 0.47
11 8 0.21
12 4 0.11
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (10 bp):
TATTTTTGTT
Found at i:97011927 original size:18 final size:17
Alignment explanation
Indices: 97011880--97011935 Score: 62
Period size: 18 Copynumber: 3.4 Consensus size: 17
97011870 ATAGATACAA
*
97011880 TATTTTT-ATTTCT-TT
1 TATTTTTAATTTTTGTT
97011895 TATTTTTAATTTTTGTT
1 TATTTTTAATTTTTGTT
**
97011912 TATTTTTGTTTATTTGTT
1 TATTTTTAATT-TTTGTT
97011930 TATTTT
1 TATTTT
97011936 CATTTCATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
15 7 0.20
16 5 0.14
17 11 0.31
18 12 0.34
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (17 bp):
TATTTTTAATTTTTGTT
Found at i:97021915 original size:18 final size:17
Alignment explanation
Indices: 97021891--97021933 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
97021881 CAATAAGGCC
* *
97021891 TATTTGGATTTTATTTT
1 TATTTGGATTTAAATTT
97021908 TCATTTGGGATTTAAATTT
1 T-ATTT-GGATTTAAATTT
97021927 TATTTGG
1 TATTTGG
97021934 TTATAACTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 3 0.14
18 8 0.36
19 11 0.50
ACGTcount: A:0.21, C:0.02, G:0.16, T:0.60
Consensus pattern (17 bp):
TATTTGGATTTAAATTT
Found at i:97030580 original size:27 final size:27
Alignment explanation
Indices: 97030546--97030756 Score: 190
Period size: 27 Copynumber: 7.8 Consensus size: 27
97030536 CCTCAATTTA
*
97030546 TAAAATTACCAAAATACCCCTGGTTTA
1 TAAAATTACCAAAATACCCCTGGTTTG
* ***
97030573 TAAAATTACTAAAATACCCCCAATTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* **
97030600 TAAAATTACAAAAATACCATTGGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* * * *
97030627 TAAAATTATCGAAATACCCCCGATTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* * ** *
97030654 TAAAATTATCGAAATACCCCCAGATTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* *
97030681 TAAAATTATCGAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
** ** *
97030708 TAAAATTACTGAAATA-CCCTTATAGTG
1 TAAAATTACCAAAATACCCCTGGT-TTG
97030735 TAAAATTACCAAAATACCCCTG
1 TAAAATTACCAAAATACCCCTG
97030757 TAGGGTAAAA
Statistics
Matches: 150, Mismatches: 32, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
26 5 0.03
27 141 0.94
28 4 0.03
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTGGTTTG
Found at i:97030737 original size:81 final size:81
Alignment explanation
Indices: 97030546--97030754 Score: 219
Period size: 81 Copynumber: 2.6 Consensus size: 81
97030536 CCTCAATTTA
* * * * * * *
97030546 TAAAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAATACCCCCAATTTGTAAAATTACAA
1 TAAAATTATCGAAATACCCCCGATGTGTAAAATTACCAAAATACCCCCAATTTGTAAAATTACAA
*
97030611 AAATACCATTGGTTTG
66 AAATACCACTGGTTTG
* * *
97030627 TAAAATTATCGAAATACCCCCGATTTGTAAAATTATCGAAATACCCCCAGA-TTGTAAAATTATC
1 TAAAATTATCGAAATACCCCCGATGTGTAAAATTACCAAAATACCCCCA-ATTTGTAAAATTA-C
* *
97030691 -GAAATACCCCTGGTTTG
64 AAAAATACCACTGGTTTG
**
97030708 TAAAATTA-CTGAAATA-CCCTTATAGTGTAAAATTACCAAAATACCCC
1 TAAAATTATC-GAAATACCCCCGAT-GTGTAAAATTACCAAAATACCCC
97030755 TGTAGGGTAA
Statistics
Matches: 108, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
80 6 0.06
81 100 0.93
82 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
TAAAATTATCGAAATACCCCCGATGTGTAAAATTACCAAAATACCCCCAATTTGTAAAATTACAA
AAATACCACTGGTTTG
Found at i:97033656 original size:102 final size:102
Alignment explanation
Indices: 97033474--97033688 Score: 358
Period size: 102 Copynumber: 2.1 Consensus size: 102
97033464 ACCTTAGTGG
** * *
97033474 TGTTTTGAATGTGAAATTGGTATGTTTGATTTAGCATAATGAAATGTCATGAGCATGATAGATGT
1 TGTTTTGGTTGTGAAATTGGTATGTTTGATTTAGCATAATAAAATGTCATGAACATGATAGATGT
* *
97033539 TTGTATTGTAATGACATGTGTTGGCCATGATTGTAGA
66 TGGTATTGCAATGACATGTGTTGGCCATGATTGTAGA
*
97033576 TGTTTTGGTTGTGAAATTGGTATGTTTGATTTGGCATAATAAAATGTCATGAACATGATAGATGT
1 TGTTTTGGTTGTGAAATTGGTATGTTTGATTTAGCATAATAAAATGTCATGAACATGATAGATGT
*
97033641 TGGTATTGCATTGACATGTGTTGGCCATGATTGTAGA
66 TGGTATTGCAATGACATGTGTTGGCCATGATTGTAGA
97033678 TGTTTTGGTTG
1 TGTTTTGGTTG
97033689 CCTAAGTGTA
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
102 105 1.00
ACGTcount: A:0.26, C:0.06, G:0.27, T:0.41
Consensus pattern (102 bp):
TGTTTTGGTTGTGAAATTGGTATGTTTGATTTAGCATAATAAAATGTCATGAACATGATAGATGT
TGGTATTGCAATGACATGTGTTGGCCATGATTGTAGA
Found at i:97041869 original size:26 final size:26
Alignment explanation
Indices: 97041840--97041990 Score: 110
Period size: 27 Copynumber: 5.7 Consensus size: 26
97041830 TTAGTTTACC
*
97041840 AAATTACTGAAATACCCCCAGTTGTA
1 AAATTACTCAAATACCCCCAGTTGTA
*
97041866 AAATTAC-CAAAGTACCCCCAGTTTATA
1 AAATTACTCAAA-TACCCCCAG-TTGTA
* * * *
97041893 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTCAAATA-CCCCCAGTTGTA
* * *
97041920 AAATTA-TCGAAATAACCTCAGTTTGCA
1 AAATTACTC-AAATACCCCCAG-TTGTA
* * *
97041947 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTCAAATACCC-CCAGTTGTA
97041974 AAATTA-TCAAAGTACCC
1 AAATTACTCAAA-TACCC
97041991 TCGATTTATA
Statistics
Matches: 96, Mismatches: 20, Indels: 17
0.72 0.15 0.13
Matches are distributed among these distances:
25 3 0.03
26 23 0.24
27 60 0.62
28 10 0.10
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (26 bp):
AAATTACTCAAATACCCCCAGTTGTA
Found at i:97041943 original size:54 final size:54
Alignment explanation
Indices: 97041861--97042006 Score: 170
Period size: 54 Copynumber: 2.7 Consensus size: 54
97041851 ATACCCCCAG
* * * * *
97041861 TTGTAAAATTACCAAAGTACCCCCAGTTTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTATCAAAGTACCCTCAGTTTATAAAATTACCAAAATACCCTCGAC
* ** *
97041915 TTGTAAAATTATCGAAA-TAACCTCAGTTTGCAAAATTACTAAAATACCCTCGAC
1 TTGTAAAATTATC-AAAGTACCCTCAGTTTATAAAATTACCAAAATACCCTCGAC
*
97041969 TTGTAAAATTATCAAAGTACCCTC-GATTTATAGAATTA
1 TTGTAAAATTATCAAAGTACCCTCAG-TTTATAAAATTA
97042007 TCGTTTTACC
Statistics
Matches: 76, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
53 4 0.05
54 69 0.91
55 3 0.04
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
TTGTAAAATTATCAAAGTACCCTCAGTTTATAAAATTACCAAAATACCCTCGAC
Found at i:97041991 original size:27 final size:26
Alignment explanation
Indices: 97041861--97042008 Score: 120
Period size: 27 Copynumber: 5.5 Consensus size: 26
97041851 ATACCCCCAG
* *
97041861 TTGTAAAATTACCAAAGTACCC-CCAGT
1 TTGTAAAATTATCAAA-TACCCTCGA-T
* * *
97041888 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTA-TCAAATACCCTCGAT
*
97041915 TTGTAAAATTATCGAAATAACCTC-AGT
1 TTGTAAAATTATC-AAATACCCTCGA-T
* * *
97041942 TTGCAAAATTACTAAAATACCCTCGAC
1 TTGTAAAATTA-TCAAATACCCTCGAT
97041969 TTGTAAAATTATCAAAGTACCCTCGAT
1 TTGTAAAATTATCAAA-TACCCTCGAT
* *
97041996 TTATAGAATTATC
1 TTGTAAAATTATC
97042009 GTTTTACCCT
Statistics
Matches: 99, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
26 6 0.06
27 84 0.85
28 9 0.09
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTATCAAATACCCTCGAT
Found at i:97042016 original size:27 final size:27
Alignment explanation
Indices: 97041986--97042070 Score: 91
Period size: 27 Copynumber: 3.1 Consensus size: 27
97041976 ATTATCAAAG
* * * *
97041986 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTAAAAAATTACCATTT
97042013 TACCCTCGATTTAAAAAATTACCATTT
1 TACCCTCGATTTAAAAAATTACCATTT
** *
97042040 TA-CCTTTAGTTTACAAAATTACCATTT
1 TACCCTCGA-TTTAAAAAATTACCATTT
97042067 TACC
1 TACC
97042071 TTTAGTGACA
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 4 0.08
27 44 0.90
28 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTAAAAAATTACCATTT
Found at i:97042071 original size:27 final size:27
Alignment explanation
Indices: 97042022--97042076 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
97042012 TTACCCTCGA
97042022 TTTAAAAAATTACCATTTTACCTTTAG
1 TTTAAAAAATTACCATTTTACCTTTAG
*
97042049 TTTACAAAATTACCATTTTACCTTTAG
1 TTTAAAAAATTACCATTTTACCTTTAG
97042076 T
1 T
97042077 GACAGGTGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.35, C:0.16, G:0.04, T:0.45
Consensus pattern (27 bp):
TTTAAAAAATTACCATTTTACCTTTAG
Found at i:97042847 original size:25 final size:24
Alignment explanation
Indices: 97042809--97042878 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
97042799 AGGAAGTGCT
*
97042809 AAAAGGGCTCTGCCCTAGTTTACC
1 AAAAGGGCTTTGCCCTAGTTTACC
* *
97042833 GAAAAGGGCTTTGCCTTAGTTTATC
1 -AAAAGGGCTTTGCCCTAGTTTACC
97042858 AGAAAGGGCTTTGCCCTAGTT
1 A-AAAGGGCTTTGCCCTAGTT
97042879 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 1 0.03
25 39 0.98
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCTAGTTTACC
Found at i:97042891 original size:24 final size:24
Alignment explanation
Indices: 97042808--97042891 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
97042798 GAGGAAGTGC
* *
97042808 TAAAAGGGCTCTGCCCTAGTTTACC
1 TAAAAGGGCTTTGCCCTAGTTTA-T
* *
97042833 GAAAAGGGCTTTGCCTTAGTTTAT
1 TAAAAGGGCTTTGCCCTAGTTTAT
*
97042857 CAGAAAGGGCTTTGCCCTAG-TTAT
1 TA-AAAGGGCTTTGCCCTAGTTTAT
97042881 TAAAAGAGGCT
1 TAAAAG-GGCT
97042892 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.20
25 36 0.72
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCTAGTTTAT
Found at i:97043085 original size:42 final size:42
Alignment explanation
Indices: 97043026--97043159 Score: 223
Period size: 42 Copynumber: 3.2 Consensus size: 42
97043016 TAGTCTCCCC
97043026 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
* *
97043068 AAATGGGCTTGCATACATTTATTGACATTATATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
* * *
97043110 AAATGGGCTTGCATACATCCATTAATATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
97043152 AAATGGGC
1 AAATGGGC
97043160 CTAAGGGCCA
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 85 1.00
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:97043219 original size:31 final size:31
Alignment explanation
Indices: 97043183--97043328 Score: 222
Period size: 31 Copynumber: 4.7 Consensus size: 31
97043173 CGTTTACAGT
* *
97043183 AAAGGCTTCGGCCTAGTAATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
97043214 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
97043245 AAAGGCTTCGGCCCAGTGATATAATTTATTA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
97043276 AAAGGCTTCAGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
97043307 AAAGGCTTCGGCCTAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
97043329 TCAAGACTAA
Statistics
Matches: 105, Mismatches: 10, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
30 5 0.05
31 100 0.95
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:97045457 original size:75 final size:75
Alignment explanation
Indices: 97045348--97045512 Score: 242
Period size: 75 Copynumber: 2.2 Consensus size: 75
97045338 TTGACGGAAG
* * * *
97045348 TTGCATCCATCGCTAGTCAGATAAACCGACGAAATAATTAGTGAGCGCAGCTCTAGCCGGATAAA
1 TTGCAGCCAACGCTAGTCAGATAAACCAACGAAATAATTAGTGAGCCCAGCTCTAGCCGGATAAA
97045413 CCAACGATAT
66 CCAACGATAT
* * **
97045423 TTG-AGCACAACGCTAGTCAGATAAACCAATGAAATAATTAGTGAGCCCGGCTCTAGTTGGATAA
1 TTGCAGC-CAACGCTAGTCAGATAAACCAACGAAATAATTAGTGAGCCCAGCTCTAGCCGGATAA
97045487 ACCAACGATAT
65 ACCAACGATAT
97045498 TTGCAGCCAACGCTA
1 TTGCAGCCAACGCTA
97045513 ATCGAATAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
74 2 0.03
75 75 0.94
76 3 0.04
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (75 bp):
TTGCAGCCAACGCTAGTCAGATAAACCAACGAAATAATTAGTGAGCCCAGCTCTAGCCGGATAAA
CCAACGATAT
Found at i:97045479 original size:40 final size:40
Alignment explanation
Indices: 97045360--97045494 Score: 136
Period size: 40 Copynumber: 3.5 Consensus size: 40
97045350 GCATCCATCG
* *
97045360 CTAGTCAGATAAACCGACGAAATAATTAGTGAGCGCAGCT
1 CTAGTCAGATAAACCAACGAAATAATTAGTGAGCACAGCT
* * * *
97045400 CTAGCCGGATAAACCAACG--AT-ATT--TGAGCACAACG
1 CTAGTCAGATAAACCAACGAAATAATTAGTGAGCACAGCT
* * *
97045435 CTAGTCAGATAAACCAATGAAATAATTAGTGAGCCCGGCT
1 CTAGTCAGATAAACCAACGAAATAATTAGTGAGCACAGCT
**
97045475 CTAGTTGGATAAACCAACGA
1 CTAGTCAGATAAACCAACGA
97045495 TATTTGCAGC
Statistics
Matches: 74, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
35 24 0.32
37 5 0.07
38 5 0.07
40 40 0.54
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (40 bp):
CTAGTCAGATAAACCAACGAAATAATTAGTGAGCACAGCT
Found at i:97046476 original size:11 final size:11
Alignment explanation
Indices: 97046460--97046488 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
97046450 TTTCGAAAAG
97046460 AAGAAAATTAA
1 AAGAAAATTAA
97046471 AAG-AAATTAA
1 AAGAAAATTAA
97046481 AAGAAAAT
1 AAGAAAAT
97046489 ATGCTTGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.17
Consensus pattern (11 bp):
AAGAAAATTAA
Found at i:97053552 original size:75 final size:75
Alignment explanation
Indices: 97053422--97053581 Score: 214
Period size: 75 Copynumber: 2.1 Consensus size: 75
97053412 GGTGTTACAG
* * *
97053422 TTTGCACCCAGTGCTAATCAGATAAACTGACGAAATAATTAGTGAGTGCAACTCTAGTTCAATAA
1 TTTGCGCCCAGCGCTAATCAGATAAACTGACGAAATAATTAGTGAGTCCAACTCTAGTTCAATAA
* *
97053487 ACCAATGATG
66 ACCAACGATA
* * * **
97053497 TTTGTGCCCAGCGCTAGTCAGATAAACTGACGAAATAATTAGTGAG-CCTAGCTCTAGTTGGATA
1 TTTGCGCCCAGCGCTAATCAGATAAACTGACGAAATAATTAGTGAGTCC-AACTCTAGTTCAATA
97053561 AACCAACGATA
65 AACCAACGATA
97053572 TTTGCGCCCA
1 TTTGCGCCCA
97053582 ATGTTAATAG
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
74 1 0.01
75 72 0.99
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (75 bp):
TTTGCGCCCAGCGCTAATCAGATAAACTGACGAAATAATTAGTGAGTCCAACTCTAGTTCAATAA
ACCAACGATA
Found at i:97058703 original size:12 final size:12
Alignment explanation
Indices: 97058686--97058713 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
97058676 ACAGTTTTAG
97058686 CACGGCCTAGCA
1 CACGGCCTAGCA
97058698 CACGGCCTAGCA
1 CACGGCCTAGCA
97058710 CACG
1 CACG
97058714 AGCGTGTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.43, G:0.25, T:0.07
Consensus pattern (12 bp):
CACGGCCTAGCA
Found at i:97060547 original size:28 final size:27
Alignment explanation
Indices: 97060476--97060548 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 27
97060466 TTGGACCTAG
* *
97060476 GGACTAAATTGCATAAAAATGAAAATT
1 GGACTTAATTGCATAAAAATGAAAATA
** * *
97060503 GGGGTTAATTTCGTAAAAATGTCAAAA-A
1 GGACTTAATTGCATAAAAATG--AAAATA
97060531 GGACTTAATTGCATAAAA
1 GGACTTAATTGCATAAAA
97060549 TGAGCTAATT
Statistics
Matches: 34, Mismatches: 10, Indels: 3
0.72 0.21 0.06
Matches are distributed among these distances:
27 16 0.47
28 14 0.41
29 4 0.12
ACGTcount: A:0.47, C:0.08, G:0.18, T:0.27
Consensus pattern (27 bp):
GGACTTAATTGCATAAAAATGAAAATA
Found at i:97061006 original size:36 final size:36
Alignment explanation
Indices: 97060958--97061588 Score: 624
Period size: 36 Copynumber: 17.3 Consensus size: 36
97060948 AGGAACACTA
*
97060958 ATTCTACT-AAAGTGCTCAATGAGCAATATCTACTG
1 ATTCTACTGAAAGTGCTCAACGAGCAATATCTACTG
* *
97060993 ATACTACTGAAAGTGCTCAATGAGCAATATCTACTG
1 ATTCTACTGAAAGTGCTCAACGAGCAATATCTACTG
* * * * * * *
97061029 ATCCTGCTGAATGTGCTCAAACAAGAAATGTCTAATG
1 ATTCTACTGAAAGTGCTC-AACGAGCAATATCTACTG
* *
97061066 ATTCTACTGAAAGTGCTCAAAAGACCAATATCTACTG
1 ATTCTACTGAAAGTGCTC-AACGAGCAATATCTACTG
* * *
97061103 GTTCTATTGAAAGTGCTCAACAAGCAATATCTACTG
1 ATTCTACTGAAAGTGCTCAACGAGCAATATCTACTG
* * * *
97061139 ATGCTACTGAATA-TGCTTAAACGAGCAATGTCTATTG
1 ATTCTACTGAA-AGTGC-TCAACGAGCAATATCTACTG
* *
97061176 ATTCTACTG-AAGTGCTTAACCAAGCAATATCTACTG
1 ATTCTACTGAAAGTGCTCAA-CGAGCAATATCTACTG
*
97061212 ATACTACTGAAAGTGCTCAACGAGCAATATCTACTG
1 ATTCTACTGAAAGTGCTCAACGAGCAATATCTACTG
* * * * * *
97061248 ATCCTACTGAATGTGCTCAAACAAGAAATGTCTAATG
1 ATTCTACTGAAAGTGCTC-AACGAGCAATATCTACTG
* *
97061285 ATTCTACTGAAAGTGCTCAAAAGACCAATATCTACTG
1 ATTCTACTGAAAGTGCTC-AACGAGCAATATCTACTG
* * *
97061322 GTTCTATTGAAAGTGCTCAACAAGCAATATCTACTG
1 ATTCTACTGAAAGTGCTCAACGAGCAATATCTACTG
* * * * *
97061358 ATCCTACTGAATGTGCTTAAACGAGCAATGTCTATTG
1 ATTCTACTGAAAGTGC-TCAACGAGCAATATCTACTG
* *
97061395 ATTCTACTG-AAGTGCTTAACCAAGCAATATCTACTG
1 ATTCTACTGAAAGTGCTCAA-CGAGCAATATCTACTG
* * *
97061431 ATTCTACTAAAAGTGCTCAACGATCAATATCAACTG
1 ATTCTACTGAAAGTGCTCAACGAGCAATATCTACTG
* * * * * *
97061467 ATCCTACTGAATGTCCTCAAACGAGAAATGTCTACTA
1 ATTCTACTGAAAGTGCTC-AACGAGCAATATCTACTG
* *
97061504 ATTCTACTG-AAGTGCTCAAACAAGCAATATCTACTA
1 ATTCTACTGAAAGTGCTC-AACGAGCAATATCTACTG
*
97061540 ATTCTACTGAATAGTTGCTCAAACGAGCAATATCCACTG
1 ATTCTACTGAA-AG-TGCTC-AACGAGCAATATCTACTG
*
97061579 ATTATACTGA
1 ATTCTACTGA
97061589 TTGTTTGATT
Statistics
Matches: 486, Mismatches: 95, Indels: 26
0.80 0.16 0.04
Matches are distributed among these distances:
35 14 0.03
36 235 0.48
37 205 0.42
38 2 0.00
39 30 0.06
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (36 bp):
ATTCTACTGAAAGTGCTCAACGAGCAATATCTACTG
Found at i:97061125 original size:73 final size:73
Alignment explanation
Indices: 97060958--97061588 Score: 675
Period size: 73 Copynumber: 8.6 Consensus size: 73
97060948 AGGAACACTA
** * *
97060958 ATTCTACT-AAAGTGCTCAATGAGCAATATCTACTGATACTACTGAAAGTGCTC-AATGAGCAAT
1 ATTCTACTGAAAGTGCTCAACAAGCAATATCTACTGATTCTACTGAAAGTGCTCAAACGAGCAAT
97061021 ATCTACTG
66 ATCTACTG
* * * * * * * *
97061029 ATCCTGCTGAATGTGCTCAAACAAGAAATGTCTAATGATTCTACTGAAAGTGCTCAAAAGACCAA
1 ATTCTACTGAAAGTGCTC-AACAAGCAATATCTACTGATTCTACTGAAAGTGCTCAAACGAGCAA
97061094 TATCTACTG
65 TATCTACTG
* * * *
97061103 GTTCTATTGAAAGTGCTCAACAAGCAATATCTACTGATGCTACTGAATA-TGCTTAAACGAGCAA
1 ATTCTACTGAAAGTGCTCAACAAGCAATATCTACTGATTCTACTGAA-AGTGCTCAAACGAGCAA
* *
97061167 TGTCTATTG
65 TATCTACTG
* *
97061176 ATTCTACTG-AAGTGCTTAACCAAGCAATATCTACTGATACTACTGAAAGTGCTC-AACGAGCAA
1 ATTCTACTGAAAGTGCTCAA-CAAGCAATATCTACTGATTCTACTGAAAGTGCTCAAACGAGCAA
97061239 TATCTACTG
65 TATCTACTG
* * * * * * *
97061248 ATCCTACTGAATGTGCTCAAACAAGAAATGTCTAATGATTCTACTGAAAGTGCTCAAAAGACCAA
1 ATTCTACTGAAAGTGCTC-AACAAGCAATATCTACTGATTCTACTGAAAGTGCTCAAACGAGCAA
97061313 TATCTACTG
65 TATCTACTG
* * * * *
97061322 GTTCTATTGAAAGTGCTCAACAAGCAATATCTACTGATCCTACTGAATGTGCTTAAACGAGCAAT
1 ATTCTACTGAAAGTGCTCAACAAGCAATATCTACTGATTCTACTGAAAGTGCTCAAACGAGCAAT
* *
97061387 GTCTATTG
66 ATCTACTG
* * *
97061395 ATTCTACTG-AAGTGCTTAACCAAGCAATATCTACTGATTCTACTAAAAGTGCTC-AACGATCAA
1 ATTCTACTGAAAGTGCTCAA-CAAGCAATATCTACTGATTCTACTGAAAGTGCTCAAACGAGCAA
*
97061458 TATCAACTG
65 TATCTACTG
* * * * * * * *
97061467 ATCCTACTGAATGTCCTCAAACGAGAAATGTCTACTAATTCTACTG-AAGTGCTCAAACAAGCAA
1 ATTCTACTGAAAGTGCTC-AACAAGCAATATCTACTGATTCTACTGAAAGTGCTCAAACGAGCAA
*
97061531 TATCTACTA
65 TATCTACTG
* * *
97061540 ATTCTACTGAATAGTTGCTCAAACGAGCAATATCCACTGATTATACTGA
1 ATTCTACTGAA-AG-TGCTC-AACAAGCAATATCTACTGATTCTACTGA
97061589 TTGTTTGATT
Statistics
Matches: 457, Mismatches: 87, Indels: 27
0.80 0.15 0.05
Matches are distributed among these distances:
71 6 0.01
72 81 0.18
73 278 0.61
74 65 0.14
75 27 0.06
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (73 bp):
ATTCTACTGAAAGTGCTCAACAAGCAATATCTACTGATTCTACTGAAAGTGCTCAAACGAGCAAT
ATCTACTG
Found at i:97061358 original size:219 final size:219
Alignment explanation
Indices: 97060979--97061580 Score: 992
Period size: 219 Copynumber: 2.7 Consensus size: 219
97060969 GTGCTCAATG
* *
97060979 AGCAATATCTACTGATACTACTGAAAGTGCTCAATGAGCAATATCTACTGATCCTGCTGAATGTG
1 AGCAATATCTACTGATACTACTGAAAGTGCTCAACGAGCAATATCTACTGATCCTACTGAATGTG
97061044 CTCAAACAAGAAATGTCTAATGATTCTACTGAAAGTGCTCAAAAGACCAATATCTACTGGTTCTA
66 CTCAAACAAGAAATGTCTAATGATTCTACTGAAAGTGCTCAAAAGACCAATATCTACTGGTTCTA
*
97061109 TTGAAAGTGCTCAACAAGCAATATCTACTGATGCTACTGAATATGCTTAAACGAGCAATGTCTAT
131 TTGAAAGTGCTCAACAAGCAATATCTACTGATCCTACTGAATATGCTTAAACGAGCAATGTCTAT
97061174 TGATTCTACTGAAGTGCTTAACCA
196 TGATTCTACTGAAGTGCTTAACCA
97061198 AGCAATATCTACTGATACTACTGAAAGTGCTCAACGAGCAATATCTACTGATCCTACTGAATGTG
1 AGCAATATCTACTGATACTACTGAAAGTGCTCAACGAGCAATATCTACTGATCCTACTGAATGTG
97061263 CTCAAACAAGAAATGTCTAATGATTCTACTGAAAGTGCTCAAAAGACCAATATCTACTGGTTCTA
66 CTCAAACAAGAAATGTCTAATGATTCTACTGAAAGTGCTCAAAAGACCAATATCTACTGGTTCTA
*
97061328 TTGAAAGTGCTCAACAAGCAATATCTACTGATCCTACTGAATGTGCTTAAACGAGCAATGTCTAT
131 TTGAAAGTGCTCAACAAGCAATATCTACTGATCCTACTGAATATGCTTAAACGAGCAATGTCTAT
97061393 TGATTCTACTGAAGTGCTTAACCA
196 TGATTCTACTGAAGTGCTTAACCA
* * * * *
97061417 AGCAATATCTACTGATTCTACTAAAAGTGCTCAACGATCAATATCAACTGATCCTACTGAATGTC
1 AGCAATATCTACTGATACTACTGAAAGTGCTCAACGAGCAATATCTACTGATCCTACTGAATGTG
* * * * **
97061482 CTCAAACGAGAAATGTCTACTAATTCTACTG-AAGTGCTCAAACA-AGCAATATCTACTAATTCT
66 CTCAAACAAGAAATGTCTAATGATTCTACTGAAAGTGCTCAAA-AGACCAATATCTACTGGTTCT
* * *
97061545 ACTGAATAGTTGCTCAAACGAGCAATATCCACTGAT
130 ATTGAA-AG-TGCTC-AACAAGCAATATCTACTGAT
97061581 TATACTGATT
Statistics
Matches: 361, Mismatches: 18, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
218 32 0.09
219 306 0.85
220 5 0.01
221 18 0.05
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (219 bp):
AGCAATATCTACTGATACTACTGAAAGTGCTCAACGAGCAATATCTACTGATCCTACTGAATGTG
CTCAAACAAGAAATGTCTAATGATTCTACTGAAAGTGCTCAAAAGACCAATATCTACTGGTTCTA
TTGAAAGTGCTCAACAAGCAATATCTACTGATCCTACTGAATATGCTTAAACGAGCAATGTCTAT
TGATTCTACTGAAGTGCTTAACCA
Found at i:97061659 original size:39 final size:39
Alignment explanation
Indices: 97060970--97061699 Score: 248
Period size: 36 Copynumber: 19.7 Consensus size: 39
97060960 TCTACTAAAG
* * *
97060970 TGCTC-AATGAGCAATATCTACTGA-TACTACTGAAAG--
1 TGCTCAAACGAGCAATATCCACTGATTA-TACTGAATGTT
* * ** *
97061006 TGCTC-AATGAGCAATATCTACTGATCCTGCTGAATG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * * * *
97061042 TGCTCAAACAAGAAATGTCTAATGATTCTACTGAAAG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * * * *
97061079 TGCTCAAAAGACCAATATCTACTGGTTCTATTGAAAG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * ** *
97061116 TGCTC-AACAAGCAATATCTACTGATGCTACTGAA--TA
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * *
97061152 TGCTTAAACGAGCAATGTCTATTGATTCTACTGAA-G--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * *
97061188 TGCTTAACCAAGCAATATCTACTGA-TACTACTGAAAG--
1 TGCTCAAACGAGCAATATCCACTGATTA-TACTGAATGTT
* **
97061225 TGCTC-AACGAGCAATATCTACTGATCCTACTGAATG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * * * *
97061261 TGCTCAAACAAGAAATGTCTAATGATTCTACTGAAAG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * * * *
97061298 TGCTCAAAAGACCAATATCTACTGGTTCTATTGAAAG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * **
97061335 TGCTC-AACAAGCAATATCTACTGATCCTACTGAATG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * *
97061371 TGCTTAAACGAGCAATGTCTATTGATTCTACTGAA-G--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * * * *
97061407 TGCTTAACCAAGCAATATCTACTGATTCTACTAAAAG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * **
97061444 TGCTC-AACGATCAATATCAACTGATCCTACTGAATG--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * * *
97061480 TCCTCAAACGAGAAATGTCTACTAATTCTACTGAA-G--
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * *
97061516 TGCTCAAACAAGCAATATCTACTAATTCTACTGAATAG-T
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAAT-GTT
*
97061555 TGCTCAAACGAGCAATATCCACTGATTATACTGATTGTT
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * * * *
97061594 TGATTAAATGAGCAATACCCACTGATTATACTAAATATT
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * * **
97061633 TTCTCAAACGAGCGATATCCATTGATTATACTGAATGCA
1 TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
* * *
97061672 TGCTCAAACAAGCCATATCCATTGATTA
1 TGCTCAAACGAGCAATATCCACTGATTA
97061700 CGCGAAATGA
Statistics
Matches: 559, Mismatches: 118, Indels: 31
0.79 0.17 0.04
Matches are distributed among these distances:
35 1 0.00
36 240 0.43
37 199 0.36
38 2 0.00
39 117 0.21
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (39 bp):
TGCTCAAACGAGCAATATCCACTGATTATACTGAATGTT
Found at i:97061698 original size:78 final size:78
Alignment explanation
Indices: 97061482--97061699 Score: 208
Period size: 78 Copynumber: 2.8 Consensus size: 78
97061472 ACTGAATGTC
* * * * * * * *
97061482 CTCAAACGAGAAATGTCTACTAATTCTACTGAA-G--TGCTCAAACAAGCAATATCTACTAATTC
1 CTCAAACGAGCAATATCCACTGATTATACTGAATGCATGCTCAAACAAGCAATATCCACTGATTA
*
97061544 TACTGAATAGTTG
66 TACTAAATAGTTG
* ** * * ** *
97061557 CTCAAACGAGCAATATCCACTGATTATACTGATTGTTTGATTAAATGAGCAATACCCACTGATTA
1 CTCAAACGAGCAATATCCACTGATTATACTGAATGCATGCTCAAACAAGCAATATCCACTGATTA
* *
97061622 TACTAAATATTTT
66 TACTAAATAGTTG
* * * *
97061635 CTCAAACGAGCGATATCCATTGATTATACTGAATGCATGCTCAAACAAGCCATATCCATTGATTA
1 CTCAAACGAGCAATATCCACTGATTATACTGAATGCATGCTCAAACAAGCAATATCCACTGATTA
97061700 CGCGAAATGA
Statistics
Matches: 111, Mismatches: 29, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
75 27 0.24
76 1 0.01
78 83 0.75
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (78 bp):
CTCAAACGAGCAATATCCACTGATTATACTGAATGCATGCTCAAACAAGCAATATCCACTGATTA
TACTAAATAGTTG
Found at i:97064225 original size:25 final size:25
Alignment explanation
Indices: 97064197--97064294 Score: 81
Period size: 25 Copynumber: 3.9 Consensus size: 25
97064187 GTGAATTTTC
97064197 TAAAAA-CCTCTTATGGCAAATTATG
1 TAAAAAGCCT-TTATGGCAAATTATG
* *
97064222 TAAAAAGCCTTTGTGGCAAATTATA
1 TAAAAAGCCTTTATGGCAAATTATG
* * * * *
97064247 TGAAAATCCTTTAAGGTAAATTATT
1 TAAAAAGCCTTTATGGCAAATTATG
* * * *
97064272 TGAAGAGCCTTTGTGGCATATTA
1 TAAAAAGCCTTTATGGCAAATTA
97064295 CCTGGAAAGC
Statistics
Matches: 58, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
25 55 0.95
26 3 0.05
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (25 bp):
TAAAAAGCCTTTATGGCAAATTATG
Found at i:97081548 original size:46 final size:46
Alignment explanation
Indices: 97081481--97081574 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
97081471 AAAATGAGAG
*
97081481 TAAGATTTAGCATGTCTAGTTCTAGTTAGTGTAAGAATGTATATTA
1 TAAGATTGAGCATGTCTAGTTCTAGTTAGTGTAAGAATGTATATTA
97081527 TAAGATTGAGCATGTCTAGTTCTAGTTAGTGTAAGAATGTATATTA
1 TAAGATTGAGCATGTCTAGTTCTAGTTAGTGTAAGAATGTATATTA
97081573 TA
1 TA
97081575 TACATGATGG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.33, C:0.06, G:0.20, T:0.40
Consensus pattern (46 bp):
TAAGATTGAGCATGTCTAGTTCTAGTTAGTGTAAGAATGTATATTA
Found at i:97084861 original size:14 final size:14
Alignment explanation
Indices: 97084838--97084901 Score: 56
Period size: 14 Copynumber: 4.4 Consensus size: 14
97084828 AATTTAAAGA
*
97084838 TTTAACTTTTATAT
1 TTTAATTTTTATAT
*
97084852 TTTAATTTTTTTAAT
1 TTTAATTTTTAT-AT
* *
97084867 TTTCATATTTTTTTAC
1 TTT-A-ATTTTTATAT
*
97084883 TTTAATTTTCATAT
1 TTTAATTTTTATAT
97084897 TTTAA
1 TTTAA
97084902 AATTTAAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
14 22 0.54
15 6 0.15
16 5 0.12
17 8 0.20
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTAATTTTTATAT
Found at i:97084869 original size:22 final size:24
Alignment explanation
Indices: 97084838--97084901 Score: 82
Period size: 22 Copynumber: 2.8 Consensus size: 24
97084828 AATTTAAAGA
*
97084838 TTTAACTTTT-ATATTTTAATTT-T
1 TTTAA-TTTTCATATTTTAATTTAC
97084861 TTTAATTTTCATATTTT--TTTAC
1 TTTAATTTTCATATTTTAATTTAC
97084883 TTTAATTTTCATATTTTAA
1 TTTAATTTTCATATTTTAA
97084902 AATTTAAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
21 3 0.08
22 21 0.58
23 12 0.33
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (24 bp):
TTTAATTTTCATATTTTAATTTAC
Found at i:97084878 original size:17 final size:16
Alignment explanation
Indices: 97084844--97084891 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
97084834 AAGATTTAAC
97084844 TTTTATATTTTAATTT
1 TTTTATATTTTAATTT
*
97084860 TTTTA-ATTTTCATATT
1 TTTTATATTTTAAT-TT
*
97084876 TTTT-TACTTTAATTT
1 TTTTATATTTTAATTT
97084891 T
1 T
97084892 CATATTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
15 10 0.37
16 17 0.63
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTATATTTTAATTT
Found at i:97085481 original size:27 final size:27
Alignment explanation
Indices: 97085451--97085565 Score: 106
Period size: 27 Copynumber: 4.2 Consensus size: 27
97085441 GTGTGGGTGC
97085451 CAGAGGAGGCACCGGTTGTGCCTCTGG
1 CAGAGGAGGCACCGGTTGTGCCTCTGG
*
97085478 CAGAGGCA-GCACCGATTGTGCCTCTGG
1 CAGAGG-AGGCACCGGTTGTGCCTCTGG
* * **** *
97085505 CAGAGGCGGCACCGGGTGGTGTGGGTGC
1 CAGAGGAGGCACC-GGTTGTGCCTCTGG
* * *
97085533 CAGAGGCGGTACCGGTTGTACCTCTGG
1 CAGAGGAGGCACCGGTTGTGCCTCTGG
97085560 CAGAGG
1 CAGAGG
97085566 CAGCACCAGT
Statistics
Matches: 68, Mismatches: 17, Indels: 6
0.75 0.19 0.07
Matches are distributed among these distances:
27 48 0.71
28 20 0.29
ACGTcount: A:0.16, C:0.25, G:0.42, T:0.17
Consensus pattern (27 bp):
CAGAGGAGGCACCGGTTGTGCCTCTGG
Found at i:97085559 original size:55 final size:54
Alignment explanation
Indices: 97085478--97085599 Score: 172
Period size: 55 Copynumber: 2.2 Consensus size: 54
97085468 GTGCCTCTGG
* * * * *
97085478 CAGAGGCAGCACCGATTGTGCCTCTGGCAGAGGCGGCACCGGGTGGTGTGGGTGC
1 CAGAGGCGGCACCGATTGTACCTCTGGCAGAGGCAGCACC-AGTGGTGTGGGTCC
* *
97085533 CAGAGGCGGTACCGGTTGTACCTCTGGCAGAGGCAGCACCAGTGGTGTGGGTCC
1 CAGAGGCGGCACCGATTGTACCTCTGGCAGAGGCAGCACCAGTGGTGTGGGTCC
97085587 CAGAGGCGGCACC
1 CAGAGGCGGCACC
97085600 TAAGCAGTAT
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
54 24 0.41
55 35 0.59
ACGTcount: A:0.16, C:0.27, G:0.41, T:0.16
Consensus pattern (54 bp):
CAGAGGCGGCACCGATTGTACCTCTGGCAGAGGCAGCACCAGTGGTGTGGGTCC
Found at i:97085711 original size:15 final size:15
Alignment explanation
Indices: 97085672--97085712 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 15
97085662 GAAAATAAAG
*
97085672 GGAAAGAAAGGAGAA
1 GGAAAAAAAGGAGAA
97085687 GAGAAGAAAAAGGAGAA
1 G-GAA-AAAAAGGAGAA
97085704 GGAAAAAAA
1 GGAAAAAAA
97085713 AAGAAAAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 6 0.26
16 6 0.26
17 11 0.48
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (15 bp):
GGAAAAAAAGGAGAA
Found at i:97085715 original size:17 final size:17
Alignment explanation
Indices: 97085678--97085713 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
97085668 AAAGGGAAAG
*
97085678 AAAGGAGAAGAGAAGAA
1 AAAGGAGAAGAGAAAAA
97085695 AAAGGAGAAG-GAAAAA
1 AAAGGAGAAGAGAAAAA
97085711 AAA
1 AAA
97085714 AGAAAAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (17 bp):
AAAGGAGAAGAGAAAAA
Found at i:97085850 original size:23 final size:23
Alignment explanation
Indices: 97085824--97085876 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
97085814 GTTGTTAGTT
* *
97085824 ATTATTATTGTTAGTAAAAAACC
1 ATTATTATTATTAATAAAAAACC
*
97085847 ATTATTATTATTAATAAAAAACT
1 ATTATTATTATTAATAAAAAACC
97085870 ATTATTA
1 ATTATTA
97085877 GGATTGTTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (23 bp):
ATTATTATTATTAATAAAAAACC
Found at i:97090688 original size:17 final size:17
Alignment explanation
Indices: 97090666--97090704 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
97090656 CGGTAATAGT
*
97090666 ATGTTCCAATTTA-ATTA
1 ATGTTCC-AGTTAGATTA
97090683 ATGTTCCAGTTAGATTA
1 ATGTTCCAGTTAGATTA
97090700 ATGTT
1 ATGTT
97090705 GTAATGTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.46
Consensus pattern (17 bp):
ATGTTCCAGTTAGATTA
Found at i:97093452 original size:139 final size:138
Alignment explanation
Indices: 97093288--97093631 Score: 559
Period size: 139 Copynumber: 2.5 Consensus size: 138
97093278 TATTTCTAAA
* * *
97093288 ATTTTTAAAATATTCAGATTCTATTTTTTAAAATATACTATTTTTGTATTTTATTTTTTATCTTA
1 ATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTTGTATTTTATTTTTTATCTTA
*
97093353 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTTAAATAACCCTAATTTTATCCC
66 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTG-TTTTTTAAATAACCCTAATTTTATCAC
97093418 TTTGTTTGT
130 TTTGTTTGT
*
97093427 ATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATCTTA
1 ATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTTGTATTTTATTTTTTATCTTA
* *
97093492 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAAATAACCCTGATTTTGTCACT
66 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAAATAACCCTAATTTTATCACT
97093557 TTGTTTGT
131 TTGTTTGT
* * *
97093565 ATTTCTAAAATTTTCGAATTTTATTTTTTAAAATATACT-TTATTT-TATTTTA-TTTTTATATT
1 ATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATT-TTTGTATTTTATTTTTTATCTT
97093627 ATTTT
65 ATTTT
97093632 TATACTATTT
Statistics
Matches: 193, Mismatches: 11, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
136 14 0.07
137 9 0.05
138 72 0.37
139 98 0.51
ACGTcount: A:0.28, C:0.08, G:0.06, T:0.58
Consensus pattern (138 bp):
ATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTTGTATTTTATTTTTTATCTTA
TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAAATAACCCTAATTTTATCACT
TTGTTTGT
Found at i:97093623 original size:11 final size:11
Alignment explanation
Indices: 97093603--97093693 Score: 60
Period size: 11 Copynumber: 7.8 Consensus size: 11
97093593 TAAAATATAC
97093603 TTTA-TTTTAT
1 TTTATTTTTAT
97093613 TTTATTTTTAT
1 TTTATTTTTAT
*
97093624 ATTATTTTTAT
1 TTTATTTTTAT
**
97093635 ACTATTTTCGTAT
1 TTTATTTT--TAT
*
97093648 TTTATTGTTTTT
1 TTTATT-TTTAT
97093660 TTTCATATTTTAT
1 TTT-AT-TTTTAT
*
97093673 TTCT-TTTCGTAT
1 TT-TATTT-TTAT
97093685 TTTATTTTT
1 TTTATTTTT
97093694 TCATATTTTA
Statistics
Matches: 64, Mismatches: 8, Indels: 17
0.72 0.09 0.19
Matches are distributed among these distances:
10 4 0.06
11 27 0.42
12 14 0.22
13 15 0.23
14 4 0.06
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:97093695 original size:20 final size:20
Alignment explanation
Indices: 97093639--97093695 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
97093629 TTTTATACTA
97093639 TTTTCGTATTTTATTGTTTT-
1 TTTTCGTATTTTATT-TTTTC
*
97093659 TTTTCATATTTTA---TTTC
1 TTTTCGTATTTTATTTTTTC
97093676 TTTTCGTATTTTATTTTTTC
1 TTTTCGTATTTTATTTTTTC
97093696 ATATTTTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
16 3 0.10
17 12 0.39
20 16 0.52
ACGTcount: A:0.12, C:0.09, G:0.05, T:0.74
Consensus pattern (20 bp):
TTTTCGTATTTTATTTTTTC
Found at i:97093700 original size:15 final size:15
Alignment explanation
Indices: 97093657--97093723 Score: 98
Period size: 15 Copynumber: 4.3 Consensus size: 15
97093647 TTTTATTGTT
97093657 TTTTTTCATATTTTA
1 TTTTTTCATATTTTA
*
97093672 TTTCTTTTCGTATTTTA
1 -TT-TTTTCATATTTTA
97093689 TTTTTTCATATTTTA
1 TTTTTTCATATTTTA
*
97093704 TTTTTTCATATTTTC
1 TTTTTTCATATTTTA
97093719 TTTTT
1 TTTTT
97093724 CTATACTATT
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
15 31 0.66
16 4 0.09
17 12 0.26
ACGTcount: A:0.15, C:0.09, G:0.01, T:0.75
Consensus pattern (15 bp):
TTTTTTCATATTTTA
Found at i:97093706 original size:37 final size:37
Alignment explanation
Indices: 97093610--97093707 Score: 98
Period size: 37 Copynumber: 2.7 Consensus size: 37
97093600 TACTTTATTT
*
97093610 TATTTTA-TTTTTATATTAT-TTTTATACTATTTTCG
1 TATTTTATTTTTTATATTTTATTTTATACTATTTTCG
* *
97093645 TATTTTATTGTTTT-T-TTTCATATTTTAT-TTCTTTTCG
1 TATTTTATT-TTTTATATTT--TATTTTATACTATTTTCG
97093682 TATTTTATTTTTTCATATTTTATTTT
1 TATTTTATTTTTT-ATATTTTATTTT
97093708 TTCATATTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 14
0.75 0.04 0.20
Matches are distributed among these distances:
35 9 0.17
36 6 0.12
37 27 0.52
38 7 0.13
39 3 0.06
ACGTcount: A:0.18, C:0.06, G:0.03, T:0.72
Consensus pattern (37 bp):
TATTTTATTTTTTATATTTTATTTTATACTATTTTCG
Found at i:97094063 original size:11 final size:11
Alignment explanation
Indices: 97094031--97094064 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
97094021 ATAAATTTAT
*
97094031 AAATTAAATCT
1 AAATTAAATCA
97094042 AAATTAAATCA
1 AAATTAAATCA
*
97094053 AAATCAAATCA
1 AAATTAAATCA
97094064 A
1 A
97094065 GAATAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.26
Consensus pattern (11 bp):
AAATTAAATCA
Found at i:97094167 original size:14 final size:13
Alignment explanation
Indices: 97094116--97094180 Score: 51
Period size: 14 Copynumber: 4.7 Consensus size: 13
97094106 AAAATTACCC
97094116 CTTTTTT-TCCTT
1 CTTTTTTCTCCTT
* *
97094128 CTTTTTCCTTCCCTC
1 CTTTTTTC-T-CCTT
97094143 CGTTTTCTTCTCCTT
1 C-TTTT-TTCTCCTT
*
97094158 CTCTTTTTCTCTTT
1 CT-TTTTTCTCCTT
97094172 CTTTTTTCT
1 CTTTTTTCT
97094181 TCCCTTCCCT
Statistics
Matches: 42, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
12 6 0.14
13 7 0.17
14 11 0.26
15 11 0.26
16 5 0.12
17 2 0.05
ACGTcount: A:0.00, C:0.32, G:0.02, T:0.66
Consensus pattern (13 bp):
CTTTTTTCTCCTT
Found at i:97094233 original size:14 final size:15
Alignment explanation
Indices: 97094204--97094242 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
97094194 CGTCTGCTTG
97094204 CTCC-TTCTTCTTCT
1 CTCCTTTCTTCTTCT
*
97094218 CTTCTTTCTT-TTCT
1 CTCCTTTCTTCTTCT
97094232 CTCCTTTCTTC
1 CTCCTTTCTTC
97094243 CCCAAATGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (15 bp):
CTCCTTTCTTCTTCT
Found at i:97094409 original size:17 final size:17
Alignment explanation
Indices: 97094387--97094426 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
97094377 CAATCTACTT
97094387 CAGCTTTTTTTTTTCAG
1 CAGCTTTTTTTTTTCAG
97094404 CAGC-TTTTTTTTTCAG
1 CAGCTTTTTTTTTTCAG
*
97094420 CATCTTT
1 CAGCTTT
97094427 CTACTATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.12, C:0.20, G:0.10, T:0.57
Consensus pattern (17 bp):
CAGCTTTTTTTTTTCAG
Found at i:97094449 original size:24 final size:24
Alignment explanation
Indices: 97094422--97094468 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
97094412 TTTTTCAGCA
97094422 TCTTTCTACTATTTCTTTTTTTTT
1 TCTTTCTACTATTTCTTTTTTTTT
*
97094446 TCTTTCTACTGTTTCTTTTTTTT
1 TCTTTCTACTATTTCTTTTTTTT
97094469 ACTGTTTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.06, C:0.17, G:0.02, T:0.74
Consensus pattern (24 bp):
TCTTTCTACTATTTCTTTTTTTTT
Found at i:97094651 original size:3 final size:3
Alignment explanation
Indices: 97094643--97094672 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
97094633 CAAAACAGTA
*
97094643 AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
97094673 GATTTAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:97097713 original size:33 final size:33
Alignment explanation
Indices: 97097667--97097732 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
97097657 TGATAAAATT
97097667 GAAAATATAAAATTTATAATGTGTTTGGTTTTA
1 GAAAATATAAAATTTATAATGTGTTTGGTTTTA
* *
97097700 GAAACTATGAAATTTATAATGTGTTTGGTTTTA
1 GAAAATATAAAATTTATAATGTGTTTGGTTTTA
97097733 CTTTTTAGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.36, C:0.02, G:0.17, T:0.45
Consensus pattern (33 bp):
GAAAATATAAAATTTATAATGTGTTTGGTTTTA
Found at i:97099296 original size:15 final size:15
Alignment explanation
Indices: 97099276--97099373 Score: 61
Period size: 15 Copynumber: 5.9 Consensus size: 15
97099266 TACAAGTTTA
97099276 AAATGAATTAAACCT
1 AAATGAATTAAACCT
**
97099291 AAATGAATTTTACAAGTTT
1 AAATGAA--TTA-AA-CCT
97099310 AACATGAATTAAACCT
1 AA-ATGAATTAAACCT
**
97099326 AAATGAATTTTACAAGTTT
1 AAATGAA--TTA-AA-CCT
97099345 AACATGAATTAAACCT
1 AA-ATGAATTAAACCT
*
97099361 AAATGAATGAAAC
1 AAATGAATTAAAC
97099374 AATCATTTAC
Statistics
Matches: 64, Mismatches: 9, Indels: 20
0.69 0.10 0.22
Matches are distributed among these distances:
15 22 0.34
16 6 0.09
17 10 0.16
18 10 0.16
19 6 0.09
20 10 0.16
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.31
Consensus pattern (15 bp):
AAATGAATTAAACCT
Found at i:97099310 original size:35 final size:35
Alignment explanation
Indices: 97099264--97099368 Score: 201
Period size: 35 Copynumber: 3.0 Consensus size: 35
97099254 TGGCCTTAGA
*
97099264 TTTACAAGTTTAAAATGAATTAAACCTAAATGAAT
1 TTTACAAGTTTAACATGAATTAAACCTAAATGAAT
97099299 TTTACAAGTTTAACATGAATTAAACCTAAATGAAT
1 TTTACAAGTTTAACATGAATTAAACCTAAATGAAT
97099334 TTTACAAGTTTAACATGAATTAAACCTAAATGAAT
1 TTTACAAGTTTAACATGAATTAAACCTAAATGAAT
97099369 GAAACAATCA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
35 69 1.00
ACGTcount: A:0.47, C:0.10, G:0.09, T:0.34
Consensus pattern (35 bp):
TTTACAAGTTTAACATGAATTAAACCTAAATGAAT
Found at i:97099318 original size:20 final size:20
Alignment explanation
Indices: 97099293--97099354 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
97099283 TTAAACCTAA
97099293 ATGAATTTTACAAGTTTAAC
1 ATGAATTTTACAAGTTTAAC
**
97099313 ATGAA--TTA-AA-CCTAA-
1 ATGAATTTTACAAGTTTAAC
97099328 ATGAATTTTACAAGTTTAAC
1 ATGAATTTTACAAGTTTAAC
97099348 ATGAATT
1 ATGAATT
97099355 AAACCTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
15 5 0.15
16 3 0.09
17 5 0.15
18 5 0.15
19 3 0.09
20 12 0.36
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.37
Consensus pattern (20 bp):
ATGAATTTTACAAGTTTAAC
Found at i:97103794 original size:45 final size:44
Alignment explanation
Indices: 97103709--97103794 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 44
97103699 TATGTAATCT
*
97103709 GAACTCATTGAGTTGTGTCTGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATCC
*
97103753 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATGTATGACA
1 GAACTCATTGAGTTGT-GTCTGAGTTCATGATATATATGACA
97103795 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 16 0.41
45 23 0.59
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (44 bp):
GAACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATCC
Found at i:97105252 original size:20 final size:21
Alignment explanation
Indices: 97105227--97105265 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
97105217 TTCTTGAAAT
97105227 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
97105247 AGGGCAACACGCCTGTGTG
1 AGGGCAACACGCCCGTGTG
97105266 TTCATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.21, C:0.28, G:0.38, T:0.13
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:97105696 original size:4 final size:4
Alignment explanation
Indices: 97105687--97105715 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
97105677 AACCGGGCCT
97105687 TAAA TAAA TAAA TAAA TAAA TAAA TAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA T
97105716 GTTTGTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:97107152 original size:20 final size:19
Alignment explanation
Indices: 97107116--97107157 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
97107106 AATAAATGTA
97107116 TTATATTTTATATTATTTAC
1 TTATATTTTATATTA-TTAC
97107136 TTATATTTTAT-TATATTAC
1 TTATATTTTATAT-TATTAC
97107155 TTA
1 TTA
97107158 ATATCTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (19 bp):
TTATATTTTATATTATTAC
Found at i:97107172 original size:23 final size:18
Alignment explanation
Indices: 97107116--97107157 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
97107106 AATAAATGTA
97107116 TTATATTTTATATTATTTAC
1 TTATA-TTT-TATTATTTAC
97107136 TTATATTTTATTATATTAC
1 TTATATTTTATTAT-TTAC
97107155 TTA
1 TTA
97107158 ATATCTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.29
19 10 0.48
20 5 0.24
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (18 bp):
TTATATTTTATTATTTAC
Found at i:97107300 original size:28 final size:28
Alignment explanation
Indices: 97107263--97107316 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
97107253 GTATTAACCA
* *
97107263 TATATTTTTTCATATTATTATTATTTAT
1 TATATATTTTCAAATTATTATTATTTAT
*
97107291 TATATATTTTTAAATTATTATTATTT
1 TATATATTTTCAAATTATTATTATTT
97107317 TACTTGTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (28 bp):
TATATATTTTCAAATTATTATTATTTAT
Found at i:97107342 original size:35 final size:34
Alignment explanation
Indices: 97107275--97107354 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 34
97107265 TATTTTTTCA
97107275 TATTATTATTATTTATTATATATTTTTAAATTAT
1 TATTATTATTATTTATTATATATTTTTAAATTAT
*
97107309 TATTATT-TTACTTGTATTATATCTTTATT-AATTATT
1 TATTATTATTA-TT-TATTATATATTT-TTAAATTA-T
97107345 TATATATTAT
1 TAT-TATTAT
97107355 ACATTATTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
33 3 0.08
34 9 0.23
35 16 0.41
36 6 0.15
37 4 0.10
38 1 0.03
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.64
Consensus pattern (34 bp):
TATTATTATTATTTATTATATATTTTTAAATTAT
Found at i:97107418 original size:16 final size:16
Alignment explanation
Indices: 97107337--97107409 Score: 56
Period size: 19 Copynumber: 4.1 Consensus size: 16
97107327 ATATCTTTAT
97107337 TAATTATTTATATATTA
1 TAATTATTT-TATATTA
*
97107354 TACATTATTTTTACATATA
1 TA-ATTA-TTTTATAT-TA
*
97107373 TACTTTCATATTATATATTA
1 TA-ATT-AT-TT-TATATTA
97107393 TAATTATTTTATATTA
1 TAATTATTTTATATTA
97107409 T
1 T
97107410 GTTATTTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
16 8 0.17
17 4 0.09
18 10 0.22
19 13 0.28
20 7 0.15
21 4 0.09
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (16 bp):
TAATTATTTTATATTA
Found at i:97130595 original size:20 final size:20
Alignment explanation
Indices: 97130570--97130617 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
97130560 TTTTGCCTCT
*
97130570 TCGACACTCCAGAGATGTTA
1 TCGACACTCCAGAGATGTCA
97130590 TCGACACTCCAGAGATGTCA
1 TCGACACTCCAGAGATGTCA
97130610 TCGACACT
1 TCGACACT
97130618 TACACTAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (20 bp):
TCGACACTCCAGAGATGTCA
Found at i:97149991 original size:24 final size:24
Alignment explanation
Indices: 97149963--97150009 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
97149953 TGCATGAATT
*
97149963 GCTTCGCTCTTTCTTTGATAATGC
1 GCTTCGCTCTTTCTTCGATAATGC
97149987 GCTTCGCTCTTTCTTCGATAATG
1 GCTTCGCTCTTTCTTCGATAATG
97150010 GAGTCCATGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.13, C:0.26, G:0.17, T:0.45
Consensus pattern (24 bp):
GCTTCGCTCTTTCTTCGATAATGC
Found at i:97159283 original size:43 final size:43
Alignment explanation
Indices: 97159229--97159357 Score: 145
Period size: 43 Copynumber: 3.0 Consensus size: 43
97159219 TATTTAAAAA
* *
97159229 CATGGCTTTTAGCTACGTTTGTAT-GCAAGGCACCGCTAAAAGT
1 CATGGCTTTTAGCGACGTTTGT-TGGCAAAGCACCGCTAAAAGT
* * *
97159272 CATGGCTTTTAGCGGCGTTTGTTGGTAAAGCGCCGCTAAAAGT
1 CATGGCTTTTAGCGACGTTTGTTGGCAAAGCACCGCTAAAAGT
* * * *
97159315 CATGGCTTTTAGTGGCGTTTG-TGCGAAAAGCGCCGCTAAAAGT
1 CATGGCTTTTAGCGACGTTTGTTG-GCAAAGCACCGCTAAAAGT
97159358 TCCACAAAAA
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
42 3 0.04
43 74 0.96
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.29
Consensus pattern (43 bp):
CATGGCTTTTAGCGACGTTTGTTGGCAAAGCACCGCTAAAAGT
Found at i:97159766 original size:21 final size:21
Alignment explanation
Indices: 97159742--97159820 Score: 122
Period size: 21 Copynumber: 3.8 Consensus size: 21
97159732 TTTGTTGCCA
97159742 TCGCTGCTGCCTCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
* *
97159763 TCGCTGCTACCGCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
*
97159784 TCGCTGCTGCCACTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
*
97159805 TCTCTGCTGCCTCTGC
1 TCGCTGCTGCCTCTGC
97159821 TCTAAGTTGT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 52 1.00
ACGTcount: A:0.03, C:0.51, G:0.19, T:0.28
Consensus pattern (21 bp):
TCGCTGCTGCCTCTGCCTCCC
Found at i:97165493 original size:9 final size:9
Alignment explanation
Indices: 97165454--97165873 Score: 433
Period size: 9 Copynumber: 47.4 Consensus size: 9
97165444 TATTTAAGTA
*
97165454 TTATGTAAG
1 TTATATAAG
*
97165463 TTATGATATG
1 TTAT-ATAAG
* *
97165473 ATATAT-AT
1 TTATATAAG
*
97165481 TTATTTAAG
1 TTATATAAG
*
97165490 TTATAT-AT
1 TTATATAAG
*
97165498 TTATCTAAG
1 TTATATAAG
*
97165507 TTGTATAAG
1 TTATATAAG
*
97165516 TTATGTAAG
1 TTATATAAG
*
97165525 TTATGTAAG
1 TTATATAAG
* *
97165534 TTGTAT-AT
1 TTATATAAG
*
97165542 TTATCTAAG
1 TTATATAAG
97165551 TTATATAAG
1 TTATATAAG
97165560 TTATATAAG
1 TTATATAAG
*
97165569 TTATGTAAG
1 TTATATAAG
*
97165578 TTCTATAAG
1 TTATATAAG
97165587 TTATATAAG
1 TTATATAAG
*
97165596 TTATAT-AT
1 TTATATAAG
*
97165604 TTATCTAAG
1 TTATATAAG
97165613 TTATATAAG
1 TTATATAAG
*
97165622 TTATGTAAG
1 TTATATAAG
*
97165631 TTATAT-AT
1 TTATATAAG
*
97165639 TTATCTAAG
1 TTATATAAG
97165648 TTATATAAG
1 TTATATAAG
97165657 TTATATAAG
1 TTATATAAG
*
97165666 TTATGTAAG
1 TTATATAAG
*
97165675 TTATATAAT
1 TTATATAAG
97165684 TTATATAAG
1 TTATATAAG
*
97165693 TTATAT-AT
1 TTATATAAG
*
97165701 TTATCTAAG
1 TTATATAAG
*
97165710 TTATCTAAG
1 TTATATAAG
* *
97165719 TTTTAT-AT
1 TTATATAAG
*
97165727 TTATCTAAG
1 TTATATAAG
*
97165736 TTATATAAA
1 TTATATAAG
*
97165745 TTATGTAAG
1 TTATATAAG
*
97165754 TTATGTAAG
1 TTATATAAG
*
97165763 TTATAT-AT
1 TTATATAAG
*
97165771 TTATCTAAG
1 TTATATAAG
97165780 TTATATAAG
1 TTATATAAG
97165789 TTATATAAG
1 TTATATAAG
*
97165798 TTATGTAAG
1 TTATATAAG
97165807 TTATATAAG
1 TTATATAAG
97165816 TTATATAAG
1 TTATATAAG
97165825 TTATATAAG
1 TTATATAAG
*
97165834 TTATCTAAG
1 TTATATAAG
97165843 TTATATAAG
1 TTATATAAG
*
97165852 TTATGTAAG
1 TTATATAAG
* *
97165861 TTTTGTAAG
1 TTATATAAG
97165870 TTAT
1 TTAT
97165874 GCTAAATATT
Statistics
Matches: 336, Mismatches: 66, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
8 44 0.13
9 286 0.85
10 6 0.02
ACGTcount: A:0.37, C:0.02, G:0.12, T:0.48
Consensus pattern (9 bp):
TTATATAAG
Found at i:97165535 original size:44 final size:44
Alignment explanation
Indices: 97165454--97165855 Score: 484
Period size: 44 Copynumber: 8.9 Consensus size: 44
97165444 TATTTAAGTA
* * * * *
97165454 TTATGTAAGTTATGATATGATATAT-ATTTATTTAAGTTATATAT
1 TTATCTAAGTTAT-ATAAGTTATATAAGTTATGTAAGTTATATAT
* * *
97165498 TTATCTAAGTTGTATAAGTTATGTAAGTTATGTAAGTTGTATAT
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATATAT
* *
97165542 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTCTATAAG
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATAT-AT
*
97165587 TTATATAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATATAT
1 TTATCTAAG---T-TA--TA--TAAGTTATATAAGTTATGTAAGTTATATAT
97165639 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATATAAT
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATAT-AT
* * * * *
97165684 TTATATAAGTTATAT-ATTTATCTAAGTTATCTAAGTTTTATAT
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATATAT
* *
97165727 TTATCTAAGTTATATAAATTATGTAAGTTATGTAAGTTATATAT
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATATAT
*
97165771 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATATAAG
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATAT-AT
* * *
97165816 TTATATAAGTTATATAAGTTATCTAAGTTATATAAGTTAT
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTAT
97165856 GTAAGTTTTG
Statistics
Matches: 313, Mismatches: 32, Indels: 25
0.85 0.09 0.07
Matches are distributed among these distances:
43 24 0.08
44 180 0.58
45 63 0.20
46 2 0.01
48 3 0.01
49 3 0.01
51 2 0.01
52 9 0.03
53 27 0.09
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (44 bp):
TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATATAT
Found at i:97166006 original size:15 final size:15
Alignment explanation
Indices: 97165986--97166070 Score: 83
Period size: 15 Copynumber: 5.8 Consensus size: 15
97165976 TAAGTTGCGG
97165986 ATTAAATAATATTTA
1 ATTAAATAATATTTA
97166001 ATTAAATAATATTT-
1 ATTAAATAATATTTA
97166015 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
97166030 ATTAAATAATATTGA
1 ATTAAATAATATTTA
97166045 A--AAA-AATTACTTTA
1 ATTAAATAA-TA-TTTA
97166059 ATTAAATAATAT
1 ATTAAATAATAT
97166071 ACATATCGTT
Statistics
Matches: 58, Mismatches: 2, Indels: 20
0.73 0.03 0.25
Matches are distributed among these distances:
12 4 0.07
13 11 0.19
14 8 0.14
15 20 0.34
16 11 0.19
17 4 0.07
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:97166034 original size:29 final size:29
Alignment explanation
Indices: 97165997--97166070 Score: 121
Period size: 29 Copynumber: 2.6 Consensus size: 29
97165987 TTAAATAATA
* * *
97165997 TTTAATTAAATAATATTTATAAAAATTAT
1 TTTAATTAAATAATATTGAAAAAAATTAC
97166026 TTTAATTAAATAATATTGAAAAAAATTAC
1 TTTAATTAAATAATATTGAAAAAAATTAC
97166055 TTTAATTAAATAATAT
1 TTTAATTAAATAATAT
97166071 ACATATCGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (29 bp):
TTTAATTAAATAATATTGAAAAAAATTAC
Found at i:97166276 original size:24 final size:24
Alignment explanation
Indices: 97166244--97166314 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
97166234 TTAACTTAAA
97166244 TGATAAAACAGACGATAATATTTG
1 TGATAAAACAGACGATAATATTTG
*
97166268 TGATAAAACAGACAATAATATTTG
1 TGATAAAACAGACGATAATATTTG
* *
97166292 TGATAAAACGGACGAGAATATTT
1 TGATAAAACAGACGATAATATTT
97166315 CAATAATAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.46, C:0.08, G:0.17, T:0.28
Consensus pattern (24 bp):
TGATAAAACAGACGATAATATTTG
Found at i:97166431 original size:64 final size:64
Alignment explanation
Indices: 97166362--97166495 Score: 259
Period size: 64 Copynumber: 2.1 Consensus size: 64
97166352 ATATTTTATT
*
97166362 AAATATTTGTATATTAGATGGGACATATTATATTAATAAATAAATTTATTAAAAATCGTGATAG
1 AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
97166426 AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
1 AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
97166490 AAATAT
1 AAATAT
97166496 AGAAATATTA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 69 1.00
ACGTcount: A:0.46, C:0.04, G:0.12, T:0.38
Consensus pattern (64 bp):
AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
Found at i:97170388 original size:6 final size:6
Alignment explanation
Indices: 97170367--97170445 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
97170357 TAGCAGAACT
* * * *
97170367 AGAATC AAAATG AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
*
97170416 AGTATC AGGTAA-C AGAATC AGAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
97170446 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
5 3 0.05
6 47 0.82
7 5 0.09
8 2 0.04
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:97170412 original size:25 final size:25
Alignment explanation
Indices: 97170379--97170445 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
97170369 AATCAAAATG
* *
97170379 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
97170404 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
97170429 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
97170446 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.46, C:0.13, G:0.21, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:97170601 original size:27 final size:26
Alignment explanation
Indices: 97170563--97170670 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 26
97170553 AGCATGGCTG
* * *
97170563 CCAGAATAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
97170589 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
97170616 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
* *
97170643 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGGCAGAGCCA
97170670 C
1 C
97170671 TTAAGAAAAT
Statistics
Matches: 73, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 12 0.16
27 55 0.75
28 6 0.08
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:97171282 original size:27 final size:27
Alignment explanation
Indices: 97171235--97171375 Score: 178
Period size: 27 Copynumber: 5.2 Consensus size: 27
97171225 GGGCAAAATG
* * * *
97171235 GTAATTTTACCCCAC-GAGGGTATCTCG
1 GTAATTCTACCCTACAG-GGGTATTTCA
97171262 GTAATTCTACCCTACAGGGGTATTTTC-
1 GTAATTCTACCCTACAGGGGTA-TTTCA
*
97171289 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
97171316 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
97171343 ATAATTCTACCCGACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
97171370 ATAATT
1 GTAATT
97171376 TTGTAAATCG
Statistics
Matches: 104, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
26 4 0.04
27 96 0.92
28 4 0.04
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:97171390 original size:27 final size:26
Alignment explanation
Indices: 97171360--97171597 Score: 108
Period size: 27 Copynumber: 8.8 Consensus size: 26
97171350 TACCCGACAG
*
97171360 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTT-AGTAATTTTGTAAATCGA
** * *
97171387 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGT-ATTTAGTAATTTTGTAAATCGA
*
97171414 GGGTACTTTGGTAATTTTGCT-AATCGA
1 GGGTA-TTTAGTAATTTTG-TAAATCGA
** **
97171441 GGGTATTTTAGTAATTTTACAGGTCGA
1 GGGTA-TTTAGTAATTTTGTAAATCGA
***
97171468 GGGTATTTCAGTAATTTCACAAATC-A
1 GGGTATTT-AGTAATTTTGTAAATCGA
* ** *
97171494 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTA-TTTAGTAATTTTGTAAATCGA
* ** *
97171521 GGGATATTTTGGTAATTTTACAAA-CCA
1 GGG-TA-TTTAGTAATTTTGTAAATCGA
* *
97171548 GGATATTTTGGTAATTTTGCT-AATCGA
1 GGGTA-TTTAGTAATTTTG-TAAATCGA
*
97171575 GGGTATTTCAGTAATTTGGTAAA
1 GGGTATTT-AGTAATTTTGTAAA
97171598 CTAATGTATT
Statistics
Matches: 171, Mismatches: 27, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
26 30 0.18
27 135 0.79
28 6 0.04
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (26 bp):
GGGTATTTAGTAATTTTGTAAATCGA
Found at i:97171468 original size:54 final size:54
Alignment explanation
Indices: 97171441--97171591 Score: 155
Period size: 54 Copynumber: 2.8 Consensus size: 54
97171431 TGCTAATCGA
97171441 GGGTATTTTAGTAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTAGTAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATCAG
* ** * ** * *
97171495 GGGTATTTTGGTAATTTTACA-AACTAGGGATATTTTGGTAATTTTACAAACCA-
1 GGGTATTTTAGTAATTTTACAGGTCGAGGG-TATTTCAGTAATTTCACAAATCAG
* * * *
97171548 GGATATTTTGGTAATTTTGCTA-ATCGAGGGTATTTCAGTAATTT
1 GGGTATTTTAGTAATTTTAC-AGGTCGAGGGTATTTCAGTAATTT
97171592 GGTAAACTAA
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
53 35 0.43
54 46 0.57
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATCAG
Found at i:97171558 original size:26 final size:27
Alignment explanation
Indices: 97171420--97171565 Score: 136
Period size: 27 Copynumber: 5.4 Consensus size: 27
97171410 TCGAGGGTAC
* * *
97171420 TTTGGTAATTTTGCTAATCGAGGG-TAT
1 TTTGGTAATTTTAC-AAACCAGGGATAT
* ** *
97171447 TTTAGTAATTTTACAGGTCGAGGG-TAT
1 TTTGGTAATTTTACA-AACCAGGGATAT
** * * *
97171474 TTCAGTAATTTCACAAATCAGGGGTAT
1 TTTGGTAATTTTACAAACCAGGGATAT
*
97171501 TTTGGTAATTTTACAAACTAGGGATAT
1 TTTGGTAATTTTACAAACCAGGGATAT
97171528 TTTGGTAATTTTACAAACCA-GGATAT
1 TTTGGTAATTTTACAAACCAGGGATAT
97171554 TTTGGTAATTTT
1 TTTGGTAATTTT
97171566 GCTAATCGAG
Statistics
Matches: 101, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
26 23 0.23
27 78 0.77
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.42
Consensus pattern (27 bp):
TTTGGTAATTTTACAAACCAGGGATAT
Found at i:97172921 original size:187 final size:187
Alignment explanation
Indices: 97172659--97173125 Score: 763
Period size: 187 Copynumber: 2.5 Consensus size: 187
97172649 ATGACACAGT
*
97172659 TTTTGCAATCTGTTAATAGATTTTTGTGGCGTTTCTAGAGAAAATGCCGGTATTTCACACATTTT
1 TTTTGCAATCTGTTAATAGATTTTTGTGGCGTTTCTAGAGAAAATGCCGGTATTTCACACCTTTT
* * * *
97172724 GTGGCGTTTATAAAAGTGCCACTAATAATAGACTATAAAGCGACGACGTTTTGAAATCTCTTTAA
66 GTGGCGTTTATAAAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCTCTTTAA
* * *
97172789 ATGTTTTGTGGCATTTTTATAGAAAGCGCCACTAATAACAAGGTAATAACGATGTCG
131 ATGTTTTGTGGCATTTTAATAGAAAGCGCCACTAATAACAAGGTAATAACGACGCCG
* * * *
97172846 TTTTGCAATCTGTTAATCGATTTTTGTGGCATTTCTAGAGAAAACGCCAGTATTTCACACCTTTT
1 TTTTGCAATCTGTTAATAGATTTTTGTGGCGTTTCTAGAGAAAATGCCGGTATTTCACACCTTTT
97172911 GTGGCGTTTATAAAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCTCTTTAA
66 GTGGCGTTTATAAAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCTCTTTAA
*
97172976 ATGTTTTGTGGCGTTTTAATAGAAAGCGCCACTAATAACAAGGTAATAACGACGCCG
131 ATGTTTTGTGGCATTTTAATAGAAAGCGCCACTAATAACAAGGTAATAACGACGCCG
* * * *
97173033 TTTTGCAATCTGTTAATAGATTTTTGTGGCGCTTCTATAGAAAATGCCGGTAATTCTCACCTTTT
1 TTTTGCAATCTGTTAATAGATTTTTGTGGCGTTTCTAGAGAAAATGCCGGTATTTCACACCTTTT
* *
97173098 GCGGCGTTTATAGAAGCGCCACTAATAA
66 GTGGCGTTTATAAAAGCGCCACTAATAA
97173126 GAAGGATGTA
Statistics
Matches: 257, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
187 257 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (187 bp):
TTTTGCAATCTGTTAATAGATTTTTGTGGCGTTTCTAGAGAAAATGCCGGTATTTCACACCTTTT
GTGGCGTTTATAAAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCTCTTTAA
ATGTTTTGTGGCATTTTAATAGAAAGCGCCACTAATAACAAGGTAATAACGACGCCG
Found at i:97173425 original size:28 final size:27
Alignment explanation
Indices: 97173373--97173425 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
97173363 GGTCTCTCTA
*
97173373 ATATATTTAAATTTTAGATTTATTTGC
1 ATATATTTAAATTTTAGATTCATTTGC
*
97173400 ATATACTTTAATTTTTA-ATATCATTT
1 ATATA-TTTAAATTTTAGAT-TCATTT
97173426 AGTCTATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.57
Consensus pattern (27 bp):
ATATATTTAAATTTTAGATTCATTTGC
Found at i:97173605 original size:14 final size:14
Alignment explanation
Indices: 97173582--97173611 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
97173572 TTTTACATTA
*
97173582 ATATCTATATATAT
1 ATATCAATATATAT
97173596 ATATCAATATATAT
1 ATATCAATATATAT
97173610 AT
1 AT
97173612 CCATATGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (14 bp):
ATATCAATATATAT
Found at i:97173735 original size:22 final size:22
Alignment explanation
Indices: 97173666--97173728 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
97173656 TAATTAAGGG
* * *
97173666 TTTAAGGGTTTATTGTCTATAG-
1 TTTAAGGTTTTATAGT-TTTAGA
* *
97173688 TTTAAGGTTTTATGGTTTTGGA
1 TTTAAGGTTTTATAGTTTTAGA
97173710 TTTAAGG-TTTATAGTTTTA
1 TTTAAGGTTTTATAGTTTTA
97173729 AGTTTTATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 13 0.38
22 21 0.62
ACGTcount: A:0.22, C:0.02, G:0.22, T:0.54
Consensus pattern (22 bp):
TTTAAGGTTTTATAGTTTTAGA
Found at i:97173742 original size:14 final size:15
Alignment explanation
Indices: 97173708--97173771 Score: 62
Period size: 14 Copynumber: 4.4 Consensus size: 15
97173698 TATGGTTTTG
97173708 GATTTAAGGTTTATA
1 GATTTAAGGTTTATA
* *
97173723 GTTTTAAGTTTTATA
1 GATTTAAGGTTTATA
*
97173738 -ATTTAAGGTCTAGT-
1 GATTTAAGGTTTA-TA
97173752 GATTT-AGGTTTATA
1 GATTTAAGGTTTATA
*
97173766 GTTTTA
1 GATTTA
97173772 TGATTTAATT
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
13 1 0.03
14 19 0.50
15 18 0.47
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.52
Consensus pattern (15 bp):
GATTTAAGGTTTATA
Found at i:97173865 original size:21 final size:21
Alignment explanation
Indices: 97173841--97173880 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
97173831 GGTTTTATGG
97173841 TTTAGGATTCAAGGTTTAATA
1 TTTAGGATTCAAGGTTTAATA
* *
97173862 TTTAGGGTTTAAGGTTTAA
1 TTTAGGATTCAAGGTTTAA
97173881 AATATAAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.03, G:0.23, T:0.45
Consensus pattern (21 bp):
TTTAGGATTCAAGGTTTAATA
Found at i:97173891 original size:21 final size:21
Alignment explanation
Indices: 97173851--97173893 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
97173841 TTTAGGATTC
* * *
97173851 AAGGTTTAATATTTAGGGTTT
1 AAGGTTTAAAATATAAGGTTT
97173872 AAGGTTTAAAATATAAGGTTT
1 AAGGTTTAAAATATAAGGTTT
97173893 A
1 A
97173894 TGACTAGAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.21, T:0.42
Consensus pattern (21 bp):
AAGGTTTAAAATATAAGGTTT
Found at i:97177430 original size:23 final size:22
Alignment explanation
Indices: 97177404--97177446 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
97177394 TTTTGAATCA
* *
97177404 TATGTTTTGGTATGACTTTGGCT
1 TATGATTTGGCATGA-TTTGGCT
97177427 TATGATTTGGCATGATTTGG
1 TATGATTTGGCATGATTTGG
97177447 TATGGATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.16, C:0.07, G:0.28, T:0.49
Consensus pattern (22 bp):
TATGATTTGGCATGATTTGGCT
Found at i:97180407 original size:22 final size:19
Alignment explanation
Indices: 97180382--97180429 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 19
97180372 TACCGTTTCG
97180382 ATTAAATTCTTGTCAAAAAATA
1 ATTAAATT-TT-T-AAAAAATA
*
97180404 ATT-AATTTTTATAAAATA
1 ATTAAATTTTTAAAAAATA
97180422 ATTAAATT
1 ATTAAATT
97180430 ATACTTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 10 0.42
19 5 0.21
20 2 0.08
21 4 0.17
22 3 0.12
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (19 bp):
ATTAAATTTTTAAAAAATA
Found at i:97188354 original size:124 final size:123
Alignment explanation
Indices: 97188202--97188425 Score: 337
Period size: 126 Copynumber: 1.8 Consensus size: 123
97188192 ATGTTTTTAA
97188202 TTTAATAAAAAAGATGATAATTATTAATATATAATTATATCCATTATAA-TATATATTAATTATT
1 TTTAATAAAAAAGATGATAATTATTAATATATAATTATATCCATTATAATTATATATTAATTATT
* *
97188266 ATCAATTTTAG-ATAGAGTTAGGATTAGTGTTAATTTAATCATATTTTTTTGATAAGTT
66 ATCAA-TTTAGCATAAAATTAGGATTAGTGTTAATTTAATCATATTTTTTTGATAAGTT
*
97188324 TTTAATAATAATAAGATGATAATCT-TTAATATATAATTATATCTATTATAATTTATATATTAAT
1 TTTAATAA-AA-AAGATGATAAT-TATTAATATATAATTATATCCATTATAA-TTATATATTAAT
* *
97188388 TTTTATCAATTTAGCATAAAATTAGGATTAGTTTTAAT
62 TATTATCAATTTAGCATAAAATTAGGATTAGTGTTAAT
97188426 CATATCTCGT
Statistics
Matches: 91, Mismatches: 5, Indels: 8
0.88 0.05 0.08
Matches are distributed among these distances:
122 8 0.09
123 2 0.02
124 36 0.40
125 6 0.07
126 39 0.43
ACGTcount: A:0.42, C:0.04, G:0.08, T:0.47
Consensus pattern (123 bp):
TTTAATAAAAAAGATGATAATTATTAATATATAATTATATCCATTATAATTATATATTAATTATT
ATCAATTTAGCATAAAATTAGGATTAGTGTTAATTTAATCATATTTTTTTGATAAGTT
Found at i:97188440 original size:124 final size:120
Alignment explanation
Indices: 97188202--97188430 Score: 315
Period size: 124 Copynumber: 1.9 Consensus size: 120
97188192 ATGTTTTTAA
97188202 TTTAATAAAAAAGATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTA
1 TTTAATAAAAAAGATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTA
* *
97188267 TCAATTTTAGATAGAGTTAGGATTAGTGTTAATTTAATCATATTTTTTTGATAAGTT
66 TCAATTTTAGATAAAATTAGGATTAG-GTT-ATTTAATCATATTTTTTTGATAAGTT
*
97188324 TTTAATAATAATAAGATGATAATCT-TTAATATATAATTATATCTATTATAATTTATATATTAAT
1 TTTAATAA-AA-AAGATGATAAT-TATTAATATATAATTATATCCATTATAA--TATATATTAAT
*
97188388 TTTTATCAA-TTTAGCATAAAATTAGGATTA-G-T-TTTAATCATAT
61 TATTATCAATTTTAG-ATAAAATTAGGATTAGGTTATTTAATCATAT
97188431 CTCGTTTTTG
Statistics
Matches: 97, Mismatches: 4, Indels: 13
0.85 0.04 0.11
Matches are distributed among these distances:
121 11 0.11
122 8 0.08
123 3 0.03
124 37 0.38
125 6 0.06
126 32 0.33
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.47
Consensus pattern (120 bp):
TTTAATAAAAAAGATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTA
TCAATTTTAGATAAAATTAGGATTAGGTTATTTAATCATATTTTTTTGATAAGTT
Done.