Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 287 of 373
Found at i:97188471 original size:17 final size:18
Alignment explanation
Indices: 97188445--97188478 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
97188435 TTTTTGTTTA
97188445 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
97188462 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
97188479 ATAGTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:97190331 original size:54 final size:54
Alignment explanation
Indices: 97190247--97190356 Score: 202
Period size: 54 Copynumber: 2.0 Consensus size: 54
97190237 GCAAAGAAAG
**
97190247 TTGGTGCATTGAGGGTGATTATTTTGAAGGTCCGATACAAGCTAAGTCTAGGGT
1 TTGGTGCATTGAGGGTGATTATTTCAAAGGTCCGATACAAGCTAAGTCTAGGGT
97190301 TTGGTGCATTGAGGGTGATTATTTCAAAGGTCCGATACAAGCTAAGTCTAGGGT
1 TTGGTGCATTGAGGGTGATTATTTCAAAGGTCCGATACAAGCTAAGTCTAGGGT
97190355 TT
1 TT
97190357 AAAAGCCTAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.25, C:0.12, G:0.30, T:0.34
Consensus pattern (54 bp):
TTGGTGCATTGAGGGTGATTATTTCAAAGGTCCGATACAAGCTAAGTCTAGGGT
Found at i:97196451 original size:23 final size:22
Alignment explanation
Indices: 97196420--97196462 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
97196410 TTGTGAATCA
* *
97196420 TATGTTTTGGTATGACTTTGGCT
1 TATGGTTTGGCATGA-TTTGGCT
97196443 TATGGTTTGGCATGATTTGG
1 TATGGTTTGGCATGATTTGG
97196463 TATGGATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.14, C:0.07, G:0.30, T:0.49
Consensus pattern (22 bp):
TATGGTTTGGCATGATTTGGCT
Found at i:97204216 original size:31 final size:31
Alignment explanation
Indices: 97204178--97204242 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
97204168 CCTTTTCATA
*
97204178 TTTCATATTTCATAACACTGGGTCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
97204209 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
97204240 TTT
1 TTT
97204243 ACTGTAAATG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:97204486 original size:24 final size:24
Alignment explanation
Indices: 97204436--97204554 Score: 179
Period size: 24 Copynumber: 5.0 Consensus size: 24
97204426 GCTTTATCAT
*
97204436 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
97204461 ATAACTGGGGCAAAAGTCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
97204485 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
97204509 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
97204532 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
97204555 TCACTTTCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 53 0.61
25 11 0.13
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:97204550 original size:47 final size:48
Alignment explanation
Indices: 97204436--97204554 Score: 179
Period size: 47 Copynumber: 2.5 Consensus size: 48
97204426 GCTTTATCAT
* *
97204436 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGTCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGTCCCTTTA
*
97204485 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAG-CCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGTCCCTTTA
97204532 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
97204555 TCACTTTCTC
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
47 29 0.44
48 25 0.38
49 12 0.18
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGTCCCTTTA
Found at i:97204649 original size:20 final size:20
Alignment explanation
Indices: 97204608--97204650 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
97204598 GAATACAGCG
**
97204608 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATACCA
97204628 TGTGCATATCATACATACCA
1 TGTGCATATCATACATACCA
97204648 TGT
1 TGT
97204651 TTTTCAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (20 bp):
TGTGCATATCATACATACCA
Found at i:97207760 original size:23 final size:23
Alignment explanation
Indices: 97207730--97207776 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
97207720 TTAGAATTAG
97207730 ATAGTTTTGAAGCTAAGTTTAAT
1 ATAGTTTTGAAGCTAAGTTTAAT
*
97207753 ATAGTTTTGAAGTTAAGTTTAAT
1 ATAGTTTTGAAGCTAAGTTTAAT
97207776 A
1 A
97207777 AATTAAACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.02, G:0.17, T:0.45
Consensus pattern (23 bp):
ATAGTTTTGAAGCTAAGTTTAAT
Found at i:97208988 original size:13 final size:13
Alignment explanation
Indices: 97208972--97209006 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
97208962 TAAAACTAAA
97208972 AATTAACTAAATT
1 AATTAACTAAATT
97208985 AATTAACTAAATT
1 AATTAACTAAATT
97208998 AATTAACTA
1 AATTAACTA
97209007 TGAACATGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (13 bp):
AATTAACTAAATT
Found at i:97209056 original size:23 final size:22
Alignment explanation
Indices: 97209029--97209071 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
97209019 ATAACAATTC
*
97209029 AAGAAAATAAACAATTACCAACT
1 AAGAAAAGAAACAA-TACCAACT
*
97209052 AAGAAACGAAACAATACCAA
1 AAGAAAAGAAACAATACCAA
97209072 GGAAAGAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.63, C:0.19, G:0.07, T:0.12
Consensus pattern (22 bp):
AAGAAAAGAAACAATACCAACT
Found at i:97213943 original size:12 final size:12
Alignment explanation
Indices: 97213926--97213953 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
97213916 TAATCTGATA
97213926 TATATATATATT
1 TATATATATATT
97213938 TATATATATATT
1 TATATATATATT
97213950 TATA
1 TATA
97213954 CTTAGCTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
TATATATATATT
Found at i:97221251 original size:13 final size:13
Alignment explanation
Indices: 97221233--97221259 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
97221223 GAAGTAATCA
97221233 CACACGGGTGTGT
1 CACACGGGTGTGT
97221246 CACACGGGTGTGT
1 CACACGGGTGTGT
97221259 C
1 C
97221260 CCTGTCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.22
Consensus pattern (13 bp):
CACACGGGTGTGT
Found at i:97230845 original size:15 final size:14
Alignment explanation
Indices: 97230825--97230880 Score: 51
Period size: 15 Copynumber: 3.8 Consensus size: 14
97230815 GATGTGGTAT
97230825 CTTGGATTTCTGTA
1 CTTGGATTTCTGTA
* *
97230839 CCTTGGATATCTTTA
1 -CTTGGATTTCTGTA
97230854 TCTTGGATTCCTCTGT-
1 -CTTGGATT--TCTGTA
97230870 CTTGGATTTCT
1 CTTGGATTTCT
97230881 TTATTATAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
13 3 0.09
15 27 0.79
17 4 0.12
ACGTcount: A:0.12, C:0.20, G:0.18, T:0.50
Consensus pattern (14 bp):
CTTGGATTTCTGTA
Found at i:97230858 original size:30 final size:29
Alignment explanation
Indices: 97230822--97230884 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 29
97230812 TATGATGTGG
97230822 TATCTTGGATT-TCTGTACCTTGGATATCTT
1 TATCTTGGATTCTCTGT--CTTGGATATCTT
*
97230852 TATCTTGGATTCCTCTGTCTTGGATTTCTT
1 TATCTTGGATT-CTCTGTCTTGGATATCTT
97230882 TAT
1 TAT
97230885 TATAGTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 25 0.83
32 5 0.17
ACGTcount: A:0.14, C:0.17, G:0.16, T:0.52
Consensus pattern (29 bp):
TATCTTGGATTCTCTGTCTTGGATATCTT
Found at i:97241766 original size:46 final size:46
Alignment explanation
Indices: 97241714--97242032 Score: 424
Period size: 46 Copynumber: 7.0 Consensus size: 46
97241704 ACTTTCTGAC
*
97241714 ATGAAATGTGTAAGACCATGGTTGAAGGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
97241760 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
97241806 ATAAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
97241852 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
97241898 ATAAAATGTGTAAGACCATGGTTGAAAGATACTATGGTAACATGA-
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * ** * *
97241943 CGGGAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * * * * *
97241989 AAAAAATGAGAAAGACCATAGTTGAAAGACACCATGGCATCATG
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
97242033 TCAAAGATAA
Statistics
Matches: 243, Mismatches: 29, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
45 36 0.15
46 207 0.85
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:97242334 original size:16 final size:17
Alignment explanation
Indices: 97242313--97242345 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
97242303 ATAATGGAGC
97242313 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
97242329 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
97242346 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:97255518 original size:18 final size:18
Alignment explanation
Indices: 97255478--97255530 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
97255468 TGGCCCATTA
*
97255478 CAGTAATAGTAAACACTG
1 CAGTAATAGTAAACAGTG
* *
97255496 TAGTAATAGTAATCAGTG
1 CAGTAATAGTAAACAGTG
* *
97255514 CAGTAACAGTAAGCAGT
1 CAGTAATAGTAAACAGT
97255531 ATGCAAGTTC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.42, C:0.13, G:0.21, T:0.25
Consensus pattern (18 bp):
CAGTAATAGTAAACAGTG
Found at i:97257231 original size:80 final size:79
Alignment explanation
Indices: 97257147--97257318 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
97257137 GGACTAAGAT
*
97257147 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
97257211 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
97257227 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
97257292 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
97257306 CCGAAGGCATTTG
1 CCGAAGGCATTTG
97257319 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:97257298 original size:39 final size:39
Alignment explanation
Indices: 97257094--97257316 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
97257084 TTGAATGCTG
* * * * *
97257094 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
97257134 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
97257173 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
97257214 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
97257254 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
97257293 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
97257317 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:97257336 original size:79 final size:80
Alignment explanation
Indices: 97257174--97257351 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
97257164 AGATACAAAT
* * * *
97257174 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
97257239 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
97257254 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
97257318 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
97257333 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
97257352 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:97265190 original size:80 final size:79
Alignment explanation
Indices: 97265106--97265277 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
97265096 GGACTAAGAT
*
97265106 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
97265170 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
97265186 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
97265251 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
97265265 CCGAAGGCATTTG
1 CCGAAGGCATTTG
97265278 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:97265257 original size:39 final size:39
Alignment explanation
Indices: 97265053--97265275 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
97265043 TTGAATGCTG
* * * * *
97265053 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
97265093 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
97265132 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
97265173 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
97265213 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
97265252 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
97265276 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:97265295 original size:79 final size:80
Alignment explanation
Indices: 97265133--97265310 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
97265123 AGATACAAAT
* * * *
97265133 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
97265198 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
97265213 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
97265277 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
97265292 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
97265311 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:97266997 original size:27 final size:27
Alignment explanation
Indices: 97266967--97267172 Score: 209
Period size: 27 Copynumber: 7.6 Consensus size: 27
97266957 ATATAGGGGA
** *
97266967 AAAACAGTCATCCTACCACATAAGGGT
1 AAAACAGTCATTTTACCACATAAGGGC
* *
97266994 AAAATAGTCATTTTACCTCATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
*
97267021 AAAACTGTCATTTTACCACATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
*
97267048 AAAATC-GTCATTTTAACACATAAGGGC
1 AAAA-CAGTCATTTTACCACATAAGGGC
* *
97267075 AAAACATTCATTTTATCACATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
* * *
97267102 AAAGCCGTCATTTTATCACATAAGGG-
1 AAAACAGTCATTTTACCACATAAGGGC
** * * *
97267128 AAAATTTGTTATTTTAACACATAAGGTC
1 AAAA-CAGTCATTTTACCACATAAGGGC
* *
97267156 AAAATAATCATTTTACC
1 AAAACAGTCATTTTACC
97267173 TTATAGGGGT
Statistics
Matches: 151, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
26 4 0.03
27 142 0.94
28 5 0.03
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (27 bp):
AAAACAGTCATTTTACCACATAAGGGC
Found at i:97267112 original size:81 final size:81
Alignment explanation
Indices: 97266983--97267172 Score: 256
Period size: 81 Copynumber: 2.3 Consensus size: 81
97266973 GTCATCCTAC
* * * *
97266983 CACATAAGGGTAAAATAGTCATTTTACCTCATAAGGGCAAAACTGTCATTTTACCACATAAGGGC
1 CACATAAGGGCAAAATAATCATTTTACCACATAAGGGCAAAACCGTCATTTTACCACATAAGGG-
97267048 AAAA-TCGTCATTTTAA
65 AAAATTCGTCATTTTAA
* * * * *
97267064 CACATAAGGGCAAAACATTCATTTTATCACATAAGGGCAAAGCCGTCATTTTATCACATAAGGGA
1 CACATAAGGGCAAAATAATCATTTTACCACATAAGGGCAAAACCGTCATTTTACCACATAAGGGA
* *
97267129 AAATTTGTTATTTTAA
66 AAATTCGTCATTTTAA
*
97267145 CACATAAGGTCAAAATAATCATTTTACC
1 CACATAAGGGCAAAATAATCATTTTACC
97267173 TTATAGGGGT
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 4 0.04
81 90 0.96
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (81 bp):
CACATAAGGGCAAAATAATCATTTTACCACATAAGGGCAAAACCGTCATTTTACCACATAAGGGA
AAATTCGTCATTTTAA
Found at i:97267193 original size:27 final size:27
Alignment explanation
Indices: 97267163--97267279 Score: 146
Period size: 27 Copynumber: 4.3 Consensus size: 27
97267153 GTCAAAATAA
* *
97267163 TCATTTTACCTTATAGGGGTATTAT-AG
1 TCATTTTACCCTATAGGGGTATT-TCGG
* * *
97267190 TCATTTTACCCCATGGGGGTATTTTGG
1 TCATTTTACCCTATAGGGGTATTTCGG
* *
97267217 TCATTTTACCCTATGGGGGCATTTCGG
1 TCATTTTACCCTATAGGGGTATTTCGG
*
97267244 CCATTTTACCCTATAGGGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTTCGG
97267271 TCATTTTAC
1 TCATTTTAC
97267280 AAGTAAATAA
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 77 0.99
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (27 bp):
TCATTTTACCCTATAGGGGTATTTCGG
Found at i:97270967 original size:46 final size:47
Alignment explanation
Indices: 97270913--97271024 Score: 156
Period size: 46 Copynumber: 2.4 Consensus size: 47
97270903 TTTCGTGTTA
* *
97270913 ATGCCATGTCCCAGACATGTCTTACACT-GGCTTACGTCTCGAGGCCG
1 ATGCCATGTCCCAGACATGTCTTACACTAGCCCT-CGTCTCGAGGCCG
* * *
97270960 ATG-CATGTCCCGGACATGTCTTACACTAGCCCTCGTCTCGATGCTG
1 ATGCCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCGAGGCCG
97271006 ATGCCATGTCCCAGACATG
1 ATGCCATGTCCCAGACATG
97271025 GTCATTGGCT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 37 0.65
47 20 0.35
ACGTcount: A:0.20, C:0.32, G:0.22, T:0.26
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCGAGGCCG
Found at i:97277400 original size:3 final size:3
Alignment explanation
Indices: 97277392--97277421 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
97277382 TTCATTAAAT
*
97277392 AAG AAG AAG AAT AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
97277422 TTCTAAGCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.03
Consensus pattern (3 bp):
AAG
Found at i:97277406 original size:12 final size:12
Alignment explanation
Indices: 97277389--97277421 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
97277379 ATCTTCATTA
97277389 AATAAGAAGAAG
1 AATAAGAAGAAG
97277401 AATAAGAAGAAG
1 AATAAGAAGAAG
*
97277413 AAGAAGAAG
1 AATAAGAAG
97277422 TTCTAAGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.27, T:0.06
Consensus pattern (12 bp):
AATAAGAAGAAG
Found at i:97279715 original size:25 final size:25
Alignment explanation
Indices: 97279685--97279735 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
97279675 TTTTACTGTA
97279685 TTAGTTTAACATCGAGTTTTTAAGC
1 TTAGTTTAACATCGAGTTTTTAAGC
97279710 TTAGTTTAACATCGAGTTTTTAAGC
1 TTAGTTTAACATCGAGTTTTTAAGC
97279735 T
1 T
97279736 AACTCAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.45
Consensus pattern (25 bp):
TTAGTTTAACATCGAGTTTTTAAGC
Found at i:97281458 original size:38 final size:38
Alignment explanation
Indices: 97281401--97281490 Score: 135
Period size: 38 Copynumber: 2.4 Consensus size: 38
97281391 ATTTCCAATT
* * *
97281401 ACAGCTCTTATGAGTAAATTGGTGTATTATTGGATAAA
1 ACAGCTCTTATGAGCAAATTGGTCTATTATCGGATAAA
* *
97281439 ATAGCTCTTATGAGCAAATTGGTCTATTATCGGATGAA
1 ACAGCTCTTATGAGCAAATTGGTCTATTATCGGATAAA
97281477 ACAGCTCTTATGAG
1 ACAGCTCTTATGAG
97281491 TAGACTAGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 46 1.00
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.34
Consensus pattern (38 bp):
ACAGCTCTTATGAGCAAATTGGTCTATTATCGGATAAA
Found at i:97287641 original size:40 final size:40
Alignment explanation
Indices: 97287581--97287791 Score: 338
Period size: 40 Copynumber: 5.3 Consensus size: 40
97287571 ACCTTTGGGT
* *
97287581 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAG-TAACTCGCACAAATGCCTTCGGGAC
*
97287620 TTAGCCCGGTTATAGTAACTCGCACAATTGCCTTC-GGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
*
97287659 TTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
*
97287699 TTGGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
*
97287739 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
97287779 TTAGCCCGGTTAT
1 TTAGCCCGGTTAT
97287792 CAATCCGAAT
Statistics
Matches: 161, Mismatches: 8, Indels: 5
0.93 0.05 0.03
Matches are distributed among these distances:
39 44 0.27
40 117 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:97287692 original size:79 final size:80
Alignment explanation
Indices: 97287581--97287791 Score: 347
Period size: 79 Copynumber: 2.7 Consensus size: 80
97287571 ACCTTTGGGT
*
97287581 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
97287644 CAATTGCCTTC-GGAC
65 CAAATGCCTTCGGGAC
* * *
97287659 TTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAGTAACTCGCAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
97287724 AAATGCCTTCGGGAC
66 AAATGCCTTCGGGAC
97287739 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
97287792 CAATCCGAAT
Statistics
Matches: 122, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
78 5 0.04
79 63 0.52
80 54 0.44
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
AAATGCCTTCGGGAC
Found at i:97294834 original size:25 final size:25
Alignment explanation
Indices: 97294804--97294854 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
97294794 TTTTACTGTA
97294804 TTAGTTTAACATCGAGTTTTTAAGC
1 TTAGTTTAACATCGAGTTTTTAAGC
97294829 TTAGTTTAACATCGAGTTTTTAAGC
1 TTAGTTTAACATCGAGTTTTTAAGC
97294854 T
1 T
97294855 AACTCAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.45
Consensus pattern (25 bp):
TTAGTTTAACATCGAGTTTTTAAGC
Found at i:97296577 original size:38 final size:38
Alignment explanation
Indices: 97296520--97296609 Score: 135
Period size: 38 Copynumber: 2.4 Consensus size: 38
97296510 ATTTCCAATT
* * *
97296520 ACAGCTCTTATGAGTAAATTGGTGTATTATTGGATAAA
1 ACAGCTCTTATGAGCAAATTGGTCTATTATCGGATAAA
* *
97296558 ATAGCTCTTATGAGCAAATTGGTCTATTATCGGATGAA
1 ACAGCTCTTATGAGCAAATTGGTCTATTATCGGATAAA
97296596 ACAGCTCTTATGAG
1 ACAGCTCTTATGAG
97296610 TAGACTAGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 46 1.00
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.34
Consensus pattern (38 bp):
ACAGCTCTTATGAGCAAATTGGTCTATTATCGGATAAA
Found at i:97302771 original size:40 final size:40
Alignment explanation
Indices: 97302690--97302911 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
97302680 AAACCAAGTA
** * *
97302690 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
97302729 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
97302769 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
97302809 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
97302849 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
97302889 CCTTTGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
97302912 CAATCCGAAT
Statistics
Matches: 170, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 13 0.08
40 157 0.92
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:97317644 original size:40 final size:40
Alignment explanation
Indices: 97317559--97317820 Score: 393
Period size: 40 Copynumber: 6.6 Consensus size: 40
97317549 AAACCAAGTA
** * *
97317559 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
97317598 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
97317638 CTTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
97317678 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
97317718 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
97317758 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
97317798 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
97317821 CAATCCGAAT
Statistics
Matches: 208, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 13 0.06
40 195 0.94
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:97323671 original size:22 final size:22
Alignment explanation
Indices: 97323643--97323686 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
97323633 GTAGAAAGTG
97323643 TGATGAACTTTGCTGACGATCC
1 TGATGAACTTTGCTGACGATCC
97323665 TGATGAACTTTGCTGACGATCC
1 TGATGAACTTTGCTGACGATCC
97323687 CCCAGCTCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (22 bp):
TGATGAACTTTGCTGACGATCC
Found at i:97341179 original size:22 final size:21
Alignment explanation
Indices: 97341149--97341191 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
97341139 TTATGAAACA
* *
97341149 TATGTTTTGGTATGACTTTGGT
1 TATGATTTGGCATGA-TTTGGT
97341171 TATGATTTGGCATGATTTGGT
1 TATGATTTGGCATGATTTGGT
97341192 ATGGATTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.16, C:0.05, G:0.28, T:0.51
Consensus pattern (21 bp):
TATGATTTGGCATGATTTGGT
Found at i:97341198 original size:11 final size:10
Alignment explanation
Indices: 97341149--97341194 Score: 56
Period size: 10 Copynumber: 4.4 Consensus size: 10
97341139 TTATGAAACA
*
97341149 TATGTTTTGG
1 TATGATTTGG
97341159 TATGACTTTGG
1 TATGA-TTTGG
97341170 TTATGATTTGG
1 -TATGATTTGG
*
97341181 CATGATTTGG
1 TATGATTTGG
97341191 TATG
1 TATG
97341195 GATTATAAGC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
10 16 0.52
11 10 0.32
12 5 0.16
ACGTcount: A:0.17, C:0.04, G:0.28, T:0.50
Consensus pattern (10 bp):
TATGATTTGG
Found at i:97343811 original size:21 final size:21
Alignment explanation
Indices: 97343751--97343813 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
97343741 ACCTAAACCT
* *
97343751 AAACTTGTAACCTGT-AACCCT
1 AAACTCGTAACCT-TAAACCCA
*
97343772 AAAC-CCTACACCTTTAAACCCA
1 AAACTCGTA-ACC-TTAAACCCA
97343794 AAACTCGTAACCTTAAACCC
1 AAACTCGTAACCTTAAACCC
97343814 TTGAACCCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
20 2 0.06
21 16 0.47
22 13 0.38
23 3 0.09
ACGTcount: A:0.38, C:0.35, G:0.05, T:0.22
Consensus pattern (21 bp):
AAACTCGTAACCTTAAACCCA
Found at i:97345585 original size:40 final size:40
Alignment explanation
Indices: 97345518--97345804 Score: 328
Period size: 40 Copynumber: 7.2 Consensus size: 40
97345508 CCTTCGGAGT
** * * *
97345518 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGCAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
97345557 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
97345597 TTAGCCCGG-TATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * **
97345636 TTAGCCCGGATATAATAGCTCGCACAAACACCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
** * * * *
97345676 TTAGCTTGGATAAAGTAGCTGGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
97345716 TTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
** * *
97345756 TTAGCCCGGA-ATAAGCCACTAGCACAAATGCTTTCGGGAC
1 TTAGCCCGGATAT-AGTAACTCGCACAAATGCCTTCGGGAC
97345796 TTAGCCCGG
1 TTAGCCCGG
97345805 TTATCATCCG
Statistics
Matches: 215, Mismatches: 30, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
39 43 0.20
40 172 0.80
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:97353832 original size:40 final size:40
Alignment explanation
Indices: 97353765--97354051 Score: 337
Period size: 40 Copynumber: 7.2 Consensus size: 40
97353755 CCTTCGGAGT
** * * *
97353765 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGCAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
97353804 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
97353844 TTAGCCCGG-TATAATAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * * *
97353883 TTAGCCCGGATATAATAGCTCGCACAAGTTCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * * *
97353923 TTATCCCGGATAAAGTAGCTCGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
97353963 TTAGCCCGAATATAGTAGCTCGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
** * *
97354003 TTAGCCCGGA-ATTAGCCACTAGCACAAATGCTTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
97354043 TTAGCCCGG
1 TTAGCCCGG
97354052 TTATCATCCG
Statistics
Matches: 217, Mismatches: 28, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
39 42 0.19
40 175 0.81
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:97356845 original size:21 final size:21
Alignment explanation
Indices: 97356805--97356845 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
97356795 ACCTAACCTT
*
97356805 AAACCCTAATTTAAATAAACA
1 AAACCCTAATCTAAATAAACA
97356826 AAACCCTAATCCTAAA-AAAC
1 AAACCCTAAT-CTAAATAAAC
97356846 GACATTGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.56, C:0.24, G:0.00, T:0.20
Consensus pattern (21 bp):
AAACCCTAATCTAAATAAACA
Found at i:97359864 original size:43 final size:41
Alignment explanation
Indices: 97359817--97359956 Score: 122
Period size: 42 Copynumber: 3.3 Consensus size: 41
97359807 ATACATGTAG
97359817 TCAAATATCGATGCCATTGTCCCAGATAGGGTCTTACACGAAA
1 TCAAATATCGATGCCA-TGTCCCAGA-AGGGTCTTACACGAAA
* * * *
97359860 TCAAATA-CGATGCCGATGTCCTAGACATGGTATTACATGTAAA
1 TCAAATATCGATGCC-ATGTCCCAGA-AGGGTCTTACACG-AAA
* * *
97359903 TCTCAA-ATCGATGCCAACGTCCCAGACGTGGTCTTACACGAAA
1 TC-AAATATCGATGCC-ATGTCCCAGAAG-GGTCTTACACGAAA
*
97359946 TCACATATCGA
1 TCAAATATCGA
97359957 AAATCCTATG
Statistics
Matches: 76, Mismatches: 15, Indels: 12
0.74 0.15 0.12
Matches are distributed among these distances:
42 26 0.34
43 24 0.32
44 26 0.34
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (41 bp):
TCAAATATCGATGCCATGTCCCAGAAGGGTCTTACACGAAA
Found at i:97359940 original size:44 final size:44
Alignment explanation
Indices: 97359784--97359940 Score: 110
Period size: 42 Copynumber: 3.6 Consensus size: 44
97359774 AGCTCGTGCA
* * * * * *
97359784 ATGCCAACATCCAAAACGTGGTCATACATGT-AGTC-AAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAATCTCAA-ATCG
** * *
97359827 ATGCCATTGTCCCAGATAG-GGTCTTACACG-AAA--TCAAATACG
1 ATGCCAACGTCCCAGA-CGTGGTCTTACATGTAAATCTCAAAT-CG
* * * * *
97359869 ATGCCGATGTCCTAGACATGGTATTACATGTAAATCTCAAATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAATCTCAAATCG
97359913 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
97359941 CGAAATCACA
Statistics
Matches: 84, Mismatches: 22, Indels: 15
0.69 0.18 0.12
Matches are distributed among these distances:
41 2 0.02
42 26 0.31
43 24 0.29
44 26 0.31
45 6 0.07
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAAATCTCAAATCG
Found at i:97361222 original size:18 final size:18
Alignment explanation
Indices: 97361199--97361236 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
97361189 AGGGATTTTT
97361199 GTCCTCGAAAATTTTACC
1 GTCCTCGAAAATTTTACC
97361217 GTCCTCGAAAATTTTACC
1 GTCCTCGAAAATTTTACC
97361235 GT
1 GT
97361237 TGAACAGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.34
Consensus pattern (18 bp):
GTCCTCGAAAATTTTACC
Found at i:97365730 original size:18 final size:18
Alignment explanation
Indices: 97365675--97365738 Score: 83
Period size: 18 Copynumber: 3.6 Consensus size: 18
97365665 CTTGGCCCAT
* *
97365675 TGCAATAACAGTAAACAA
1 TGCAGTAACAGTAAACAG
* *
97365693 TGCAGAAATAGTAAACAG
1 TGCAGTAACAGTAAACAG
*
97365711 TGCAGTAACAGTAAATAG
1 TGCAGTAACAGTAAACAG
97365729 TGCAGTAACA
1 TGCAGTAACA
97365739 ATAAGTAGTA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (18 bp):
TGCAGTAACAGTAAACAG
Found at i:97365747 original size:18 final size:18
Alignment explanation
Indices: 97365704--97365747 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
97365694 GCAGAAATAG
* *
97365704 TAAACAGTGCAGTAACAG
1 TAAATAGTGCAGTAACAA
97365722 TAAATAGTGCAGTAACAA
1 TAAATAGTGCAGTAACAA
*
97365740 TAAGTAGT
1 TAAATAGT
97365748 ATGCAAGTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.23
Consensus pattern (18 bp):
TAAATAGTGCAGTAACAA
Found at i:97366111 original size:27 final size:27
Alignment explanation
Indices: 97366078--97366214 Score: 193
Period size: 27 Copynumber: 5.1 Consensus size: 27
97366068 ATCGCATAGA
*
97366078 GGCAAAACAATCATTTTACCATATAAG
1 GGCAAAACAATCATTTTACCACATAAG
* *
97366105 GGTAAAACAGTCATTTTACCACATAAG
1 GGCAAAACAATCATTTTACCACATAAG
*
97366132 GGTAAAACAATCATTTTACCACATAAG
1 GGCAAAACAATCATTTTACCACATAAG
* * *
97366159 GGCAAAATAGTCATTTTATCACATAAG
1 GGCAAAACAATCATTTTACCACATAAG
* *
97366186 GGCAGAACAATCATCTTACCACATAAG
1 GGCAAAACAATCATTTTACCACATAAG
97366213 GG
1 GG
97366215 GGTCTAGGTA
Statistics
Matches: 97, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 97 1.00
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.25
Consensus pattern (27 bp):
GGCAAAACAATCATTTTACCACATAAG
Found at i:97370518 original size:42 final size:41
Alignment explanation
Indices: 97370405--97370571 Score: 111
Period size: 43 Copynumber: 3.9 Consensus size: 41
97370395 TAAGATTGTA
* * * *
97370405 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATAT
1 CAATACCAACGTCCCAGACATGGTCTTACACGAAATC-AA-AT
* * * * * *
97370448 TAATGCC-ACTATCCCAAATAGGGTCTTACACGAAATCAAAT
1 CAATACCAAC-GTCCCAGACATGGTCTTACACGAAATCAAAT
* * *
97370489 ACGATACCGATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT
1 -CAATACCAACGTCCCAGACATGGTCTTACACG-AAA--TCAAAT
* * * *
97370534 CAATGCCAACGTCCTAGACGTGGTCTTACAAGAAATCA
1 CAATACCAACGTCCCAGACATGGTCTTACACGAAATCA
97370572 CATATGAAAA
Statistics
Matches: 95, Mismatches: 23, Indels: 14
0.72 0.17 0.11
Matches are distributed among these distances:
41 5 0.05
42 26 0.27
43 33 0.35
44 25 0.26
45 6 0.06
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.24
Consensus pattern (41 bp):
CAATACCAACGTCCCAGACATGGTCTTACACGAAATCAAAT
Found at i:97390260 original size:23 final size:23
Alignment explanation
Indices: 97390216--97390322 Score: 101
Period size: 23 Copynumber: 4.6 Consensus size: 23
97390206 CAAGTTGATG
97390216 AACAGTAAGCTCTATATTGAGCTGA
1 AACAGTAAGCTC--TATTGAGCTGA
*
97390241 AACGGTAAGCTCTATTGAGCTG-
1 AACAGTAAGCTCTATTGAGCTGA
*
97390263 AACAGTAAGCTC-ATACGAGCTGA
1 AACAGTAAGCTCTAT-TGAGCTGA
* * * * *
97390286 AACTGTAAGCTCCAATGAGTTTAA
1 AACAGTAAGCTCTATTGAG-CTGA
97390310 AACAGTAAGCTCT
1 AACAGTAAGCTCT
97390323 TACGAACTGA
Statistics
Matches: 68, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
21 2 0.03
22 17 0.25
23 24 0.35
24 14 0.21
25 11 0.16
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (23 bp):
AACAGTAAGCTCTATTGAGCTGA
Found at i:97390282 original size:22 final size:24
Alignment explanation
Indices: 97390216--97390297 Score: 107
Period size: 23 Copynumber: 3.5 Consensus size: 24
97390206 CAAGTTGATG
97390216 AACAGTAAGCTCTATATTGAGCTGA
1 AACAGTAAGCTC-ATATTGAGCTGA
*
97390241 AACGGTAAGCTC-TATTGAGCTG-
1 AACAGTAAGCTCATATTGAGCTGA
*
97390263 AACAGTAAGCTCATA-CGAGCTGA
1 AACAGTAAGCTCATATTGAGCTGA
*
97390286 AACTGTAAGCTC
1 AACAGTAAGCTC
97390298 CAATGAGTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
22 17 0.33
23 23 0.45
25 11 0.22
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (24 bp):
AACAGTAAGCTCATATTGAGCTGA
Found at i:97390314 original size:47 final size:45
Alignment explanation
Indices: 97390216--97390332 Score: 126
Period size: 47 Copynumber: 2.5 Consensus size: 45
97390206 CAAGTTGATG
* * * *
97390216 AACAGTAAGCTCTATATTGAGCTGAAACGGTAAGCTCTATTGAGCTG
1 AACAGTAAGCTC-ATA-CGAGCTGAAACGGTAAGCTCCAATGAGCTA
* *
97390263 AACAGTAAGCTCATACGAGCTGAAACTGTAAGCTCCAATGAGTTTAA
1 AACAGTAAGCTCATACGAGCTGAAACGGTAAGCTCCAATGAG-CT-A
* *
97390310 AACAGTAAGCTCTTACGAACTGA
1 AACAGTAAGCTCATACGAGCTGA
97390333 TATATTGGTA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
45 23 0.38
46 4 0.07
47 33 0.55
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (45 bp):
AACAGTAAGCTCATACGAGCTGAAACGGTAAGCTCCAATGAGCTA
Found at i:97400831 original size:46 final size:46
Alignment explanation
Indices: 97400730--97400817 Score: 140
Period size: 46 Copynumber: 1.9 Consensus size: 46
97400720 TGTAACCCGC
* *
97400730 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
* *
97400776 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
97400818 AACCATCCTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:97402546 original size:39 final size:39
Alignment explanation
Indices: 97402492--97402743 Score: 272
Period size: 39 Copynumber: 6.2 Consensus size: 39
97402482 AAGACACTGA
* * * *
97402492 AAATGTATCCGGGCTAAAGTCTCGTAGGCTTCGTGTTGG
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
97402531 AAATGTATCCAGGCTAAAGTCCCGCAAGCTTCGTGCTGG
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
97402570 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
97402609 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGGGGACTTCGTGCTGG
1 AAATATATCCGGGCTAAAGTCCCGCA----------GG-CTTCGTGCTGG
* *
97402659 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
97402698 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTTGTGCT-G
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
97402736 ATAATATA
1 A-AATATA
97402744 ATTTCGGGTT
Statistics
Matches: 185, Mismatches: 16, Indels: 24
0.82 0.07 0.11
Matches are distributed among these distances:
38 2 0.01
39 145 0.78
40 2 0.01
49 2 0.01
50 34 0.18
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:97402678 original size:50 final size:50
Alignment explanation
Indices: 97402598--97402693 Score: 165
Period size: 50 Copynumber: 1.9 Consensus size: 50
97402588 GTCCCGCAGG
*
97402598 CTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGGGGA
1 CTTCGTGCTGGAAATATATCCGGACCAAAGTCCCGCAGGCTTCGTGGGGA
* *
97402648 CTTCGTGCTGGAAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTG
1 CTTCGTGCTGGAAATATATCCGGACCAAAGTCCCGCAGGCTTCGTG
97402694 CTGGAAATGT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (50 bp):
CTTCGTGCTGGAAATATATCCGGACCAAAGTCCCGCAGGCTTCGTGGGGA
Found at i:97402710 original size:89 final size:89
Alignment explanation
Indices: 97402559--97402728 Score: 313
Period size: 89 Copynumber: 1.9 Consensus size: 89
97402549 GTCCCGCAAG
*
97402559 CTTCGTGCTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCC
1 CTTCGTGCTGGAAATATATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCC
97402624 AAAGTCCCGCAGGCTTCGTGGGGA
66 AAAGTCCCGCAGGCTTCGTGGGGA
* *
97402648 CTTCGTGCTGGAAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCC
1 CTTCGTGCTGGAAATATATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCC
97402713 AAAGTCCCGCAGGCTT
66 AAAGTCCCGCAGGCTT
97402729 TGTGCTGATA
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 78 1.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (89 bp):
CTTCGTGCTGGAAATATATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCC
AAAGTCCCGCAGGCTTCGTGGGGA
Found at i:97411133 original size:15 final size:15
Alignment explanation
Indices: 97411109--97411139 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
97411099 TATTTTTCTT
97411109 TATATAAAATATTTA
1 TATATAAAATATTTA
*
97411124 TATATCAAATATTTA
1 TATATAAAATATTTA
97411139 T
1 T
97411140 TTTCTCCACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (15 bp):
TATATAAAATATTTA
Found at i:97413126 original size:31 final size:31
Alignment explanation
Indices: 97413083--97413152 Score: 122
Period size: 31 Copynumber: 2.3 Consensus size: 31
97413073 GGTTTATCAG
* *
97413083 TTTTCAAGGAAGACACGCCTTATAGGATGCA
1 TTTTCAATGAAGACACGCCCTATAGGATGCA
97413114 TTTTCAATGAAGACACGCCCTATAGGATGCA
1 TTTTCAATGAAGACACGCCCTATAGGATGCA
97413145 TTTTCAAT
1 TTTTCAAT
97413153 TTCTCTATCC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (31 bp):
TTTTCAATGAAGACACGCCCTATAGGATGCA
Found at i:97424731 original size:21 final size:21
Alignment explanation
Indices: 97424705--97424754 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
97424695 AAAAAACCCA
*
97424705 ATTTTCAAGTTCTGAGA-TCCT
1 ATTTTCAAGTTCCGAGACT-CT
97424726 ATTTTCAAGTTCCGAGACTCT
1 ATTTTCAAGTTCCGAGACTCT
97424747 ATTTTCAA
1 ATTTTCAA
97424755 AACATATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 26 0.96
22 1 0.04
ACGTcount: A:0.26, C:0.20, G:0.12, T:0.42
Consensus pattern (21 bp):
ATTTTCAAGTTCCGAGACTCT
Found at i:97425316 original size:49 final size:49
Alignment explanation
Indices: 97425243--97425375 Score: 140
Period size: 49 Copynumber: 2.7 Consensus size: 49
97425233 GTGTGGGCTT
* * * * *** **
97425243 GAAAATATCTTATGTTCCTTAGCCATTCTGATAAGTGTGTTAAGTGTGA
1 GAAAATATTTTATATTTCTCAGCCATTCTGATAAGCACGTTAAGTGCAA
* *
97425292 GAAAATTTTTTATATTTCTCAGCCATTCTAATAAGCACGTTAAGTGCAA
1 GAAAATATTTTATATTTCTCAGCCATTCTGATAAGCACGTTAAGTGCAA
* * *
97425341 GAACATATTTTATGTTTCTCAGCCATTTTGATAAG
1 GAAAATATTTTATATTTCTCAGCCATTCTGATAAG
97425376 ATAAGTATTT
Statistics
Matches: 68, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
49 68 1.00
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (49 bp):
GAAAATATTTTATATTTCTCAGCCATTCTGATAAGCACGTTAAGTGCAA
Found at i:97443357 original size:28 final size:29
Alignment explanation
Indices: 97443323--97443395 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
97443313 GTATAATAAG
97443323 CCCGCACACTTAGTGCT-TA-ATAGTCGAA
1 CCCGCACACTTAGTGCTATACA-AGTCGAA
* * *
97443351 CTCGCACACTTAGTGCTATACAATTTGAA
1 CCCGCACACTTAGTGCTATACAAGTCGAA
97443380 CCCGCACACTTAGTGC
1 CCCGCACACTTAGTGC
97443396 CAATCTCATG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
28 16 0.41
29 22 0.56
30 1 0.03
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
CCCGCACACTTAGTGCTATACAAGTCGAA
Found at i:97446613 original size:40 final size:39
Alignment explanation
Indices: 97446544--97446639 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 39
97446534 CTATCTCGGT
* *
97446544 ATCGCACACTTAGTGCCTCGTATAGCCAAAACTATTCCAT
1 ATCGCACACTTAGTG-CTCGTATAACCAAAACTATTCCAA
* * ** *
97446584 TTTGCACACTTAGTGCTATTTATAACCAAAACTATTTCAA
1 ATCGCACACTTAGTGCT-CGTATAACCAAAACTATTCCAA
97446624 ATCGCACACTTAGTGC
1 ATCGCACACTTAGTGC
97446640 CGAACATAGT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
39 2 0.04
40 44 0.96
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.31
Consensus pattern (39 bp):
ATCGCACACTTAGTGCTCGTATAACCAAAACTATTCCAA
Found at i:97448499 original size:21 final size:21
Alignment explanation
Indices: 97448473--97448521 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
97448463 CAAAACCCTG
97448473 TTTTCAAGTTCTGAGA-TCCTA
1 TTTTCAAGTTCTGAGACT-CTA
*
97448494 TTTTCAAGTTCTGATACTCTA
1 TTTTCAAGTTCTGAGACTCTA
97448515 TTTTCAA
1 TTTTCAA
97448522 AACATATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.24, C:0.18, G:0.10, T:0.47
Consensus pattern (21 bp):
TTTTCAAGTTCTGAGACTCTA
Found at i:97449071 original size:51 final size:49
Alignment explanation
Indices: 97448997--97449127 Score: 127
Period size: 51 Copynumber: 2.6 Consensus size: 49
97448987 GGGCTTGAAA
* * * *** **
97448997 ATATCTTATGTTCCTTAGCCATTCTGATAAGTGTGTTAAGTGTGAGAAC
1 ATATTTTATGTTTCTCAGCCATTCTGATAAGCACGTTAAGTGCAAGAAC
* * * *
97449046 CTTTTTTTTGTATTTCTCAGCCATTCTAATAAGCACGTTAAGTGCAAGAAC
1 ATATTTTATG--TTTCTCAGCCATTCTGATAAGCACGTTAAGTGCAAGAAC
*
97449097 ATATTTTATGTTTCTCAGCCATTTTGATAAG
1 ATATTTTATGTTTCTCAGCCATTCTGATAAG
97449128 ATAAGTATTT
Statistics
Matches: 63, Mismatches: 17, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
49 25 0.40
51 38 0.60
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (49 bp):
ATATTTTATGTTTCTCAGCCATTCTGATAAGCACGTTAAGTGCAAGAAC
Found at i:97454497 original size:22 final size:22
Alignment explanation
Indices: 97454442--97454499 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
97454432 CCCAAGGCCA
*
97454442 TAAACATGACAGCACATAACCG
1 TAAACATGATAGCACATAACCG
* **
97454464 TAAACAGGATAGCACATAGTCG
1 TAAACATGATAGCACATAACCG
*
97454486 TAAACATCATAGCA
1 TAAACATGATAGCA
97454500 ATGTGCCAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.45, C:0.22, G:0.16, T:0.17
Consensus pattern (22 bp):
TAAACATGATAGCACATAACCG
Found at i:97454958 original size:41 final size:41
Alignment explanation
Indices: 97454899--97455021 Score: 201
Period size: 41 Copynumber: 3.0 Consensus size: 41
97454889 TAAAAGCCAC
*
97454899 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
* * *
97454940 CGGTGGATCCACGATCGTCGAGCAACCATGTGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
*
97454981 CAGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
97455022 TTCTTCCTCC
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
Found at i:97455331 original size:27 final size:27
Alignment explanation
Indices: 97455301--97455618 Score: 216
Period size: 27 Copynumber: 11.8 Consensus size: 27
97455291 GTATTTCGAA
* ** *
97455301 AATTTTGCAAACCAATAGTATTTCTGT
1 AATTTTGCAAATCAAGGGTATTTTTGT
*
97455328 AATTTTTG-AAAGTCAAGGGTATTTTTAT
1 AA-TTTTGCAAA-TCAAGGGTATTTTTGT
*
97455356 AATTTTGTAAATCAAGGGTATTTTTGT
1 AATTTTGCAAATCAAGGGTATTTTTGT
*
97455383 AATTTTCCAAATCAAGGGTATTTTTGT
1 AATTTTGCAAATCAAGGGTATTTTTGT
* * *
97455410 AATTTT-CTAAATTAGGGGTATTGTTGT
1 AATTTTGC-AAATCAAGGGTATTTTTGT
* * *
97455437 AATTTTACAAATCGAGGGTA-TTTCGAT
1 AATTTTGCAAATCAAGGGTATTTTTG-T
* * * **
97455464 AATTTTACAAGTCGAGGGTATTTCAGT
1 AATTTTGCAAATCAAGGGTATTTTTGT
** * *
97455491 AATTTCACAAATTAGGGGTA-TTTTGTT
1 AATTTTGCAAATCAAGGGTATTTTTG-T
* * * *
97455518 AATTTTACAAACCAGGGGTA-TTTTGG
1 AATTTTGCAAATCAAGGGTATTTTTGT
* * * *
97455544 AATTTTACAAACCAGGGGTA-TTTGGT
1 AATTTTGCAAATCAAGGGTATTTTTGT
* * ** *
97455570 AATTTTTCTAATTGAGGGTATTTTGGT
1 AATTTTGCAAATCAAGGGTATTTTTGT
* *
97455597 AATTTTGTAAACCAAGGGTATT
1 AATTTTGCAAATCAAGGGTATT
97455619 CAGTAACTTT
Statistics
Matches: 238, Mismatches: 44, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
26 45 0.19
27 168 0.71
28 25 0.11
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
AATTTTGCAAATCAAGGGTATTTTTGT
Found at i:97455421 original size:54 final size:53
Alignment explanation
Indices: 97455260--97455645 Score: 235
Period size: 54 Copynumber: 7.2 Consensus size: 53
97455250 TTCACCCTAA
* * * * * * * *
97455260 AAGGGTGTTTTGGTAAATCTACAACTCAAGGGTATTTCGAAAATTTTGC-AAACC
1 AAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTG-TAATTTT-CTAAATC
** * ** * *
97455314 AATAGTATTTCTGTAATTTTTGAAAGTCAAGGGTATTTTTATAATTTTGTAAATC
1 AAGGGTATTTTTGTAATTTTACAAA-TCAAGGGTA-TTTTGTAATTTTCTAAATC
* *
97455369 AAGGGTATTTTTGTAATTTTCCAAATCAAGGGTATTTTTGTAATTTTCTAAATT
1 AAGGGTATTTTTGTAATTTTACAAATCAAGGGTA-TTTTGTAATTTTCTAAATC
* * * * *
97455423 AGGGGTATTGTTGTAATTTTACAAATCGAGGGTATTTCGATAATTTTAC-AAGTC
1 AAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTG-TAATTTT-CTAAATC
* ** * * * *
97455477 GAGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGTTAATTTTAC-AAACC
1 AAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTG-TAATTTT-CTAAATC
* * * * * *
97455531 AGGGGTA-TTTTGGAATTTTACAAACCAGGGGTATTTGGTAATTTTTCT-AATT
1 AAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTGTAA-TTTTCTAAATC
* * ** * ** *
97455583 GAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTCAGTAACTTTT-TAAACC
1 AAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTGTAA-TTTTCTAAATC
*
97455636 AATGGTATTT
1 AAGGGTATTT
97455646 CAGTAATTCT
Statistics
Matches: 255, Mismatches: 68, Indels: 19
0.75 0.20 0.06
Matches are distributed among these distances:
52 12 0.05
53 73 0.29
54 127 0.50
55 40 0.16
56 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (53 bp):
AAGGGTATTTTTGTAATTTTACAAATCAAGGGTATTTTGTAATTTTCTAAATC
Found at i:97455467 original size:81 final size:79
Alignment explanation
Indices: 97455279--97455653 Score: 287
Period size: 81 Copynumber: 4.7 Consensus size: 79
97455269 TTGGTAAATC
* * * ** *
97455279 TACAACTCAAGGGTATTTCGAAAATTTTGCAAACCAATAGTATTTCTGTAATTTT-TGAAAGTCA
1 TACAAATCAAGGGTATTTCG-TAATTTTACAAACCAAGGGTATTTCTGTAATTTTCT-AAA-TTA
* *
97455343 AGGGTATTTTTATAATTT
63 GGGGTA-TTTTGTAATTT
** * * * *
97455361 TGTAAATCAAGGGTATTTTTGTAATTTTCCAAATCAAGGGTATTTTTGTAATTTTCTAAATTAGG
1 TACAAATCAAGGGTA-TTTCGTAATTTTACAAACCAAGGGTATTTCTGTAATTTTCTAAATTAGG
97455426 GGTATTGTTGTAATTT
65 GGTATT-TTGTAATTT
* ** * * *
97455442 TACAAATCGAGGGTATTTCGATAATTTTACAAGTCGAGGGTATTTCAGTAA-TTTCACAAATTAG
1 TACAAATCAAGGGTATTTCG-TAATTTTACAAACCAAGGGTATTTCTGTAATTTTC-TAAATTAG
97455506 GGGTATTTTGTTAATTT
64 GGGTATTTTG-TAATTT
* * * * * *
97455523 TACAAACCAGGGGTATTTTGGAATTTTACAAACCAGGGGTATTT-GGTAATTTTTCT-AATT-GA
1 TACAAATCAAGGGTATTTCGTAATTTTACAAACCAAGGGTATTTCTGTAA-TTTTCTAAATTAG-
97455585 GGGTATTTTGGTAATTT
64 GGGTATTTT-GTAATTT
** * * * *
97455602 TGTAAACCAAGGGTA-TTCAGTAACTTTT-TAAACCAATGGTATTTCAGTAATT
1 TACAAATCAAGGGTATTTC-GTAA-TTTTACAAACCAAGGGTATTTCTGTAATT
97455654 CTACCCCACA
Statistics
Matches: 237, Mismatches: 43, Indels: 29
0.77 0.14 0.09
Matches are distributed among these distances:
78 3 0.01
79 53 0.22
80 41 0.17
81 92 0.39
82 43 0.18
83 5 0.02
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (79 bp):
TACAAATCAAGGGTATTTCGTAATTTTACAAACCAAGGGTATTTCTGTAATTTTCTAAATTAGGG
GTATTTTGTAATTT
Found at i:97455629 original size:27 final size:26
Alignment explanation
Indices: 97455286--97455653 Score: 106
Period size: 27 Copynumber: 13.7 Consensus size: 26
97455276 ATCTACAACT
* *
97455286 CAAGGGTATTTC-GAAAATTTTGCAAAC
1 CAAGGGTATTTCAG-TAATTTT-TAAAC
** * *
97455313 CAATAGTATTTCTGTAATTTTTGAAAGT
1 CAAGGGTATTTCAGTAATTTTT-AAA-C
* *
97455341 CAAGGGTATTTTTA-TAATTTTGTAAAT
1 CAAGGGTA-TTTCAGTAATTTT-TAAAC
** * *
97455368 CAAGGGTATTTTTGTAATTTTCCAAAT
1 CAAGGGTATTTCAGTAATTTT-TAAAC
** *
97455395 CAAGGGTATTTTTGTAATTTTCTAAAT
1 CAAGGGTATTTCAGTAATTTT-TAAAC
* * * * *
97455422 TAGGGGTATTGT-TGTAATTTTACAAAT
1 CAAGGGTATT-TCAGTAATTTT-TAAAC
* *
97455449 CGAGGGTATTTC-GATAA-TTTTACAAGT
1 CAAGGGTATTTCAG-TAATTTTTA-AA-C
* ** *
97455476 CGAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTCAGTAATTT-TTAAAC
* * * *
97455503 TAGGGGTATTT-TGTTAATTTTACAAAC
1 CAAGGGTATTTCAG-TAATTTT-TAAAC
* * * *
97455530 CAGGGGTATTT-TGGAATTTTACAAAC
1 CAAGGGTATTTCAGTAATTTT-TAAAC
* * * *
97455556 CAGGGGTATTT-GGTAATTTTTCTAAT
1 CAAGGGTATTTCAGTAATTTTT-AAAC
** **
97455582 TGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTT-TAAAC
97455609 CAAGGGTA-TTCAGTAACTTTTTAAAC
1 CAAGGGTATTTCAGTAA-TTTTTAAAC
*
97455635 CAATGGTATTTCAGTAATT
1 CAAGGGTATTTCAGTAATT
97455654 CTACCCCACA
Statistics
Matches: 274, Mismatches: 46, Indels: 43
0.75 0.13 0.12
Matches are distributed among these distances:
25 1 0.00
26 72 0.26
27 172 0.63
28 24 0.09
29 5 0.02
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (26 bp):
CAAGGGTATTTCAGTAATTTTTAAAC
Found at i:97455670 original size:27 final size:27
Alignment explanation
Indices: 97455639--97455733 Score: 118
Period size: 27 Copynumber: 3.5 Consensus size: 27
97455629 TTAAACCAAT
*
97455639 GGTATTTCAGTAATTCTACCCCACAAG
1 GGTATTTCAGTAATTCTACCCTACAAG
* * *
97455666 AGTATTTCAGCAATTCTATCCTACAAG
1 GGTATTTCAGTAATTCTACCCTACAAG
* * * *
97455693 GGCATGTCAGTAATTCTACCCTATAGG
1 GGTATTTCAGTAATTCTACCCTACAAG
97455720 GGTATTTCAGTAAT
1 GGTATTTCAGTAAT
97455734 ATTAGCCTAC
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (27 bp):
GGTATTTCAGTAATTCTACCCTACAAG
Found at i:97467161 original size:14 final size:13
Alignment explanation
Indices: 97467138--97467169 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
97467128 GGGATATCAA
97467138 AACAATAATTAAG
1 AACAATAATTAAG
97467151 AACACATAATTAAG
1 AACA-ATAATTAAG
97467165 AACAA
1 AACAA
97467170 GTTTAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:97474290 original size:10 final size:10
Alignment explanation
Indices: 97474275--97474314 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
97474265 CTGTTTTGTA
97474275 CATGATATGC
1 CATGATATGC
97474285 CATGATATGC
1 CATGATATGC
*
97474295 ACCTGATATGC
1 -CATGATATGC
97474306 CATGATATG
1 CATGATATG
97474315 TTCATATATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (10 bp):
CATGATATGC
Found at i:97474431 original size:24 final size:24
Alignment explanation
Indices: 97474358--97474442 Score: 109
Period size: 25 Copynumber: 3.5 Consensus size: 24
97474348 TGGAGGAAGT
97474358 TCAAAAGGGCTTTGCCCCAGTTTA
1 TCAAAAGGGCTTTGCCCCAGTTTA
*
97474382 CCGAAAAGGGCTTTGCCCCAGTTTA
1 TC-AAAAGGGCTTTGCCCCAGTTTA
*
97474407 TCAAAACGGGCTTTGCCCTAG-TTA
1 TCAAAA-GGGCTTTGCCCCAGTTTA
*
97474431 TTAAAAGAGGCT
1 TCAAAAG-GGCT
97474443 AGGCCTCCAG
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
23 1 0.02
24 17 0.31
25 36 0.67
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (24 bp):
TCAAAAGGGCTTTGCCCCAGTTTA
Found at i:97474698 original size:30 final size:31
Alignment explanation
Indices: 97474650--97474732 Score: 143
Period size: 30 Copynumber: 2.7 Consensus size: 31
97474640 CGTTTACAGT
97474650 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
97474681 AAAGGCTTTGG-CCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
97474711 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
97474733 TTGAGACTGA
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
30 34 0.69
31 15 0.31
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:97482217 original size:10 final size:10
Alignment explanation
Indices: 97482202--97482241 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
97482192 CTGTTTTGTA
97482202 CATGATATGC
1 CATGATATGC
97482212 CATGATATGC
1 CATGATATGC
*
97482222 ACCTGATATGC
1 -CATGATATGC
97482233 CATGATATG
1 CATGATATG
97482242 TTCATATATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (10 bp):
CATGATATGC
Found at i:97499594 original size:48 final size:48
Alignment explanation
Indices: 97499471--97499606 Score: 157
Period size: 48 Copynumber: 2.8 Consensus size: 48
97499461 TGAGGTCGAT
* ** * *
97499471 GCCATGTCCTAGACATGGTCTTACACTAGCTCTTGTCTCAATGCCGAT
1 GCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATCAATGCCGAC
* * *
97499519 GCCATATCCCAGACATGGTCTTACACTGGCTCTCATATC-GTGGCCGAC
1 GCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATCAAT-GCCGAC
* * *
97499567 GCTATGTCCTAGACATGGTCTTACACTGGCACACATATCA
1 GCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATCA
97499607 CCCAAATGTC
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
47 1 0.01
48 72 0.99
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATCAATGCCGAC
Found at i:97511878 original size:33 final size:33
Alignment explanation
Indices: 97511816--97511881 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
97511806 ATGCAATAAC
* **
97511816 AGTCTGGGCCAGAGCCCTATTCAGTAACAGTAT
1 AGTCTGGGCCAGAGCCCTATACAAAAACAGTAT
**
97511849 AGTCTGGGCCTTAGCCCTATACAAAAACAGTAT
1 AGTCTGGGCCAGAGCCCTATACAAAAACAGTAT
97511882 GGGCCTAAGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (33 bp):
AGTCTGGGCCAGAGCCCTATACAAAAACAGTAT
Found at i:97519824 original size:40 final size:40
Alignment explanation
Indices: 97519724--97520025 Score: 307
Period size: 40 Copynumber: 7.7 Consensus size: 40
97519714 GCTCCTCGTT
* * * *
97519724 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
97519764 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
97519803 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
97519843 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
97519883 CAAAGGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
*
97519922 CAAATGCCTTC-GGATCTT--CCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
97519960 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
97520001 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
97520026 CAGCATTCAA
Statistics
Matches: 234, Mismatches: 19, Indels: 18
0.86 0.07 0.07
Matches are distributed among these distances:
38 40 0.17
39 67 0.29
40 116 0.50
41 11 0.05
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:97519827 original size:79 final size:80
Alignment explanation
Indices: 97519724--97519934 Score: 275
Period size: 79 Copynumber: 2.7 Consensus size: 80
97519714 GCTCCTCGTT
* * * *
97519724 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACATAACCCGG
97519788 ATTTAACAACTCGCA
66 ATTTAACAACTCGCA
* * * *
97519803 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACATAACCCGG
** *
97519868 ATTTAGTATCTCGCA
66 ATTTAACAACTCGCA
* *
97519883 CAAAGGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCACAAATGCCTTCGG
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCACAAATGCCTTCGG
97519935 ATCTTCCCGG
Statistics
Matches: 115, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
79 65 0.57
80 50 0.43
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACATAACCCGG
ATTTAACAACTCGCA
Found at i:97520034 original size:41 final size:41
Alignment explanation
Indices: 97519957--97520034 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
97519947 TTTGTATCTC
* * *
97519957 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
97519998 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
97520035 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:97522014 original size:19 final size:19
Alignment explanation
Indices: 97521990--97522027 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
97521980 TGGGCCACGT
97521990 TGGGCCAAAATGGG-TCGTG
1 TGGGCC-AAATGGGCTCGTG
*
97522009 TGGGCCCAATGGGCTCGTG
1 TGGGCCAAATGGGCTCGTG
97522028 GGCCCTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.16, C:0.21, G:0.42, T:0.21
Consensus pattern (19 bp):
TGGGCCAAATGGGCTCGTG
Found at i:97525332 original size:78 final size:78
Alignment explanation
Indices: 97525250--97525393 Score: 216
Period size: 78 Copynumber: 1.8 Consensus size: 78
97525240 ATTGCTCGTT
* * *
97525250 TGAGCAAACATTCAGTATAATCAATGGATATCGCTCATTTGAGCAAACATTCAGTAAAATCAGTG
1 TGAGCAAACATTCAGTATAACCAATGGATATAGCTCATTTGAGAAAACATTCAGTAAAATCAGTG
97525315 GATATCACTTGTC
66 GATATCACTTGTC
* * * * *
97525328 TGAGCAAGCATTTAGTATAACCAATGGATATAGCTCGTTTGAGAAAACATTTAGTATAATCAGTG
1 TGAGCAAACATTCAGTATAACCAATGGATATAGCTCATTTGAGAAAACATTCAGTAAAATCAGTG
97525393 G
66 G
97525394 GTATTGCTCG
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
78 58 1.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (78 bp):
TGAGCAAACATTCAGTATAACCAATGGATATAGCTCATTTGAGAAAACATTCAGTAAAATCAGTG
GATATCACTTGTC
Found at i:97525674 original size:37 final size:37
Alignment explanation
Indices: 97525239--97525673 Score: 276
Period size: 37 Copynumber: 11.6 Consensus size: 37
97525229 AATCAGTGAA
*
97525239 TATTGCTCGTTTGAGCAAACATTCAGTATAATCAAT-GG
1 TATTGCTCGTTTGAGC--ACATTCAGTATAATCAGTAGG
* * *
97525277 ATATCGCTCATTTGAGCAAACATTCAGTAAAATCAGT-GG
1 -TATTGCTCGTTTGAGC--ACATTCAGTATAATCAGTAGG
** * * * * *
97525316 ATATCACTTGTCTGAGCAAGCATTTAGTATAACCAAT-GG
1 -TATTGCTCGTTTGAGC-A-CATTCAGTATAATCAGTAGG
* * * *
97525355 ATATAGCTCGTTTGAGAAAACATTTAGTATAATCAGTGGG
1 -TATTGCTCGTTTGAG--CACATTCAGTATAATCAGTAGG
* * * *
97525395 TATTGCTCGTTTGAGAAACTTTCAATATATTC---AGG
1 TATTGCTCGTTTGAG-CACATTCAGTATAATCAGTAGG
* * * *
97525430 --TTGCTCTTTTGAGCACGTTCAGTATAACCAGTAGA
1 TATTGCTCGTTTGAGCACATTCAGTATAATCAGTAGG
* * * *
97525465 TATTGCTCATTTGAGCAACTTTTAGTACAATCAGTAGG
1 TATTGCTCGTTTGAGC-ACATTCAGTATAATCAGTAGG
* * * ** * * *
97525503 CATTGTTCTTTTGAGCATGTTTAGTATAACCAGTAGA
1 TATTGCTCGTTTGAGCACATTCAGTATAATCAGTAGG
* * * * * *
97525540 TATTGCTTGTATGAGGACATTTAGCATAATCAATAGG
1 TATTGCTCGTTTGAGCACATTCAGTATAATCAGTAGG
*
97525577 TATTGCTCGTTTGAGCACATAT-AGTATAATTAGTAGG
1 TATTGCTCGTTTGAGCACAT-TCAGTATAATCAGTAGG
* * *
97525614 TATTGCTCATTTGTGCACATTCAATATAATCAGTAGG
1 TATTGCTCGTTTGAGCACATTCAGTATAATCAGTAGG
97525651 TATTGCTCGTTTGAGCACATTCA
1 TATTGCTCGTTTGAGCACATTCA
97525674 ACATTTAACT
Statistics
Matches: 314, Mismatches: 70, Indels: 26
0.77 0.17 0.06
Matches are distributed among these distances:
32 11 0.04
33 12 0.04
35 4 0.01
36 1 0.00
37 135 0.43
38 45 0.14
39 103 0.33
40 3 0.01
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.35
Consensus pattern (37 bp):
TATTGCTCGTTTGAGCACATTCAGTATAATCAGTAGG
Found at i:97534629 original size:19 final size:17
Alignment explanation
Indices: 97534605--97534647 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
97534595 ACTTCTCTCC
*
97534605 CTATCTTATGATTATGAAT
1 CTATCTTATCATTAT--AT
*
97534624 CTATCTTTTCATTATAT
1 CTATCTTATCATTATAT
97534641 CTATCTT
1 CTATCTT
97534648 TGTACATTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 9 0.41
19 13 0.59
ACGTcount: A:0.26, C:0.16, G:0.05, T:0.53
Consensus pattern (17 bp):
CTATCTTATCATTATAT
Found at i:97537669 original size:25 final size:24
Alignment explanation
Indices: 97537635--97537682 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
97537625 TTAGGGTTAT
*
97537635 CGATTTCAGCTCGTATGAGCTTAA
1 CGATTTCAGCTCGCATGAGCTTAA
97537659 CGATTCTCAGCTCGCATGAGCTTA
1 CGATT-TCAGCTCGCATGAGCTTA
97537683 TCATCACTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (24 bp):
CGATTTCAGCTCGCATGAGCTTAA
Found at i:97537692 original size:25 final size:25
Alignment explanation
Indices: 97537640--97537696 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
97537630 GTTATCGATT
* *
97537640 TCAGCTCGTATGAGCTTAACGATTC
1 TCAGCTCGCATGAGCTTAACGATAC
*
97537665 TCAGCTCGCATGAGCTTATC-ATCAC
1 TCAGCTCGCATGAGCTTAACGAT-AC
97537690 TCAGCTC
1 TCAGCTC
97537697 AGAGGAGCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 2 0.07
25 26 0.93
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.30
Consensus pattern (25 bp):
TCAGCTCGCATGAGCTTAACGATAC
Found at i:97537733 original size:24 final size:25
Alignment explanation
Indices: 97537701--97537757 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
97537691 CAGCTCAGAG
*
97537701 GAGCTTACCG-TTTACAGATCGTAA
1 GAGCATACCGATTTACAGATCGTAA
* * *
97537725 GAGCATACCGATTTAGAGCTCGTAT
1 GAGCATACCGATTTACAGATCGTAA
*
97537750 GAACATAC
1 GAGCATAC
97537758 ATGTATAGGA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 9 0.33
25 18 0.67
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (25 bp):
GAGCATACCGATTTACAGATCGTAA
Found at i:97543211 original size:42 final size:42
Alignment explanation
Indices: 97543155--97543238 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
97543145 CAAAAGTAGC
* *
97543155 ATGCTATATGTTAAAGATGCTCGATTGCTATGAAATTAAAAG
1 ATGCTATATATTAAAGATGCTCGATTGCTATAAAATTAAAAG
*
97543197 ATGCTATATATTAAAGATGCTTGATTGCTATAAAATTAAAAG
1 ATGCTATATATTAAAGATGCTCGATTGCTATAAAATTAAAAG
97543239 CTGAAAGTCC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.35
Consensus pattern (42 bp):
ATGCTATATATTAAAGATGCTCGATTGCTATAAAATTAAAAG
Found at i:97544327 original size:42 final size:42
Alignment explanation
Indices: 97544221--97544383 Score: 152
Period size: 43 Copynumber: 3.8 Consensus size: 42
97544211 TGCGGTATGT
* * * *
97544221 GATTTCGTGTAAGACCACATCTGGGAC-TTGGCATCGATTTGA
1 GATTTCATGTAAGACCACGTCTAGGACATTGGCATCGATAT-A
* *
97544263 GATTTACATGTAAGAACATGTCTAGGACATTGGCATCG-TATA
1 GATTT-CATGTAAGACCACGTCTAGGACATTGGCATCGATATA
* * *
97544305 CGATTTCATGTAAGACC-CTGTCTAGGACAGTGGCATCGACATTT
1 -GATTTCATGTAAGACCAC-GTCTAGGACATTGGCATCGATA-TA
** *
97544349 GATAACATGTAAGACCACGTCTTGGACATTGGCAT
1 GATTTCATGTAAGACCACGTCTAGGACATTGGCAT
97544384 TGTATGAGTT
Statistics
Matches: 99, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
42 34 0.34
43 54 0.55
44 11 0.11
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (42 bp):
GATTTCATGTAAGACCACGTCTAGGACATTGGCATCGATATA
Found at i:97545015 original size:91 final size:91
Alignment explanation
Indices: 97544855--97545053 Score: 326
Period size: 91 Copynumber: 2.2 Consensus size: 91
97544845 TATATGGCAT
* *
97544855 GTATGGGCTAGTGATGTTATGATATGTGTTATGTGAATTTCTTGCCATGTTATATGGTACGCATA
1 GTATAGGCTAGTGATGTTATGATATGTGTTATGTGAATTTCTTGCCATGTTATATGGTACGAATA
**
97544920 TGATTGAGACTATGGGGTTGGTTTTG
66 TGATTGAGACTATGGAATTGGTTTTG
*
97544946 GTATAGGCTAGTGATGTTATGATATGTGTTATGTGAATTTCTTGCCATGTTATATGGTATGAATA
1 GTATAGGCTAGTGATGTTATGATATGTGTTATGTGAATTTCTTGCCATGTTATATGGTACGAATA
*
97545011 TGATTGATACTATGGAATTGGTTTTG
66 TGATTGAGACTATGGAATTGGTTTTG
*
97545037 GTATAGACTATGTGATG
1 GTATAGGCTA-GTGATG
97545054 GAAAAAGGTT
Statistics
Matches: 100, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
91 94 0.94
92 6 0.06
ACGTcount: A:0.24, C:0.07, G:0.28, T:0.42
Consensus pattern (91 bp):
GTATAGGCTAGTGATGTTATGATATGTGTTATGTGAATTTCTTGCCATGTTATATGGTACGAATA
TGATTGAGACTATGGAATTGGTTTTG
Found at i:97553246 original size:40 final size:40
Alignment explanation
Indices: 97553194--97553385 Score: 217
Period size: 40 Copynumber: 4.8 Consensus size: 40
97553184 ATAACCACAA
* * *
97553194 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
97553234 GTACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
97553274 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
97553314 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
97553354 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
97553386 CATTCAAATG
Statistics
Matches: 140, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 135 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:97553278 original size:80 final size:80
Alignment explanation
Indices: 97553165--97553384 Score: 239
Period size: 80 Copynumber: 2.8 Consensus size: 80
97553155 ACCCAAGTTT
* * * * * * * * *
97553165 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
* *
97553228 CAACTCGTACAAATGC
66 C-ACTAGCACAAATGC
* * *
97553244 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
97553308 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
97553324 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
97553385 TCATTCAAAT
Statistics
Matches: 116, Mismatches: 21, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
79 12 0.10
80 97 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:97556401 original size:27 final size:27
Alignment explanation
Indices: 97556371--97556546 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
97556361 ATATTGAGCC
* *
97556371 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
97556398 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
97556425 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
97556453 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
97556480 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
97556507 CGCACAC-TAGTGCAACATAGTCAA-T
1 CGCACACTTAGTGCTACATAATCAACT
*
97556532 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
97556547 GTACAATTTA
Statistics
Matches: 126, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
25 7 0.06
26 19 0.15
27 77 0.61
28 23 0.18
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:97556463 original size:55 final size:54
Alignment explanation
Indices: 97556371--97556546 Score: 187
Period size: 55 Copynumber: 3.3 Consensus size: 54
97556361 ATATTGAGCC
* * * * *
97556371 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
97556425 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
97556480 CGCACACTTAGTGC-ATCATATTCATTTCGCACAC-TAGTGCAACATAGTC-AAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
*
97556532 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
97556547 GTACAATTTA
Statistics
Matches: 102, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
52 15 0.15
53 12 0.12
54 30 0.29
55 45 0.44
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:97556510 original size:82 final size:79
Alignment explanation
Indices: 97556392--97556545 Score: 202
Period size: 82 Copynumber: 1.9 Consensus size: 79
97556382 TGCTATATAA
* *
97556392 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACAC-TAGTGCAACATAGTC-AA-TCGCA
97556457 CACTTAGTGCCGCATGG
63 CACTTAGTGCCGCATGG
* * ** *
97556474 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTAGTGCAACATAGTCAATCGCACC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTAGTGCAACATAGTCAATCGCACA
97556538 CTTAGTGC
65 CTTAGTGC
97556546 TGTACAATTT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 14 0.22
80 2 0.03
81 15 0.23
82 33 0.52
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (79 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTAGTGCAACATAGTCAATCGCACAC
TTAGTGCCGCATGG
Found at i:97564324 original size:27 final size:27
Alignment explanation
Indices: 97564294--97564471 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
97564284 ATATTGAGCC
* *
97564294 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
97564321 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
97564348 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
97564376 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
97564403 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
97564430 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
97564457 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
97564472 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:97564433 original size:82 final size:81
Alignment explanation
Indices: 97564315--97564470 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
97564305 TGCTATATAA
* * * *
97564315 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
97564380 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
97564397 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
97564461 CCCTTAGTGC
65 CACTTAGTGC
97564471 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 17 0.27
82 47 0.73
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:97581367 original size:43 final size:42
Alignment explanation
Indices: 97581320--97581455 Score: 116
Period size: 44 Copynumber: 3.2 Consensus size: 42
97581310 CCTGACGTGA
*
97581320 TCTTACATGTAACCAAATATTGATGC-CACTGTCCCAGACAAGG
1 TCTTACATGTAACCAAATA-CGATGCTCA-TGTCCCAGACAAGG
* * * * *
97581363 TCTTACACGAAATCAAATACGATGCTGATGTCCCAGACATGG
1 TCTTACATGTAACCAAATACGATGCTCATGTCCCAGACAAGG
* **
97581405 TCTTACATGTAAATCATAAGT-CGATGC-CAATGTCCCAGACGTGG
1 TCTTACATGT-AACCA-AA-TACGATGCTC-ATGTCCCAGACAAGG
97581449 TCTTACA
1 TCTTACA
97581456 CGCAAACACA
Statistics
Matches: 78, Mismatches: 10, Indels: 9
0.80 0.10 0.09
Matches are distributed among these distances:
42 26 0.33
43 22 0.28
44 29 0.37
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
TCTTACATGTAACCAAATACGATGCTCATGTCCCAGACAAGG
Found at i:97581398 original size:42 final size:44
Alignment explanation
Indices: 97581341--97581457 Score: 150
Period size: 44 Copynumber: 2.7 Consensus size: 44
97581331 ACCAAATATT
* *
97581341 GATGCCACTGTCCCAGACAAGGTCTTACACG-AAATCA-AA-TAC
1 GATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATAAGT-C
** *
97581383 GATGCTGATGTCCCAGACATGGTCTTACATGTAAATCATAAGTC
1 GATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATAAGTC
*
97581427 GATGCCAATGTCCCAGACGTGGTCTTACACG
1 GATGCCAATGTCCCAGACATGGTCTTACACG
97581458 CAAACACATA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 26 0.41
43 6 0.10
44 30 0.48
45 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.24
Consensus pattern (44 bp):
GATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATAAGTC
Found at i:97586274 original size:27 final size:27
Alignment explanation
Indices: 97586244--97586297 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
97586234 TATCATGTGA
* *
97586244 AATTGAATGGAAAATTATTGTTACATG
1 AATTGAATGGAAAATTACTCTTACATG
**
97586271 AATTGAATGTTAAATTACTCTTACATG
1 AATTGAATGGAAAATTACTCTTACATG
97586298 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGAAAATTACTCTTACATG
Found at i:97590422 original size:15 final size:15
Alignment explanation
Indices: 97590400--97590437 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
97590390 TAAATTCGAT
97590400 TTTC-TTATCATGGA
1 TTTCTTTATCATGGA
*
97590414 TTTCTTTATCTTGGA
1 TTTCTTTATCATGGA
97590429 TTTCTTTAT
1 TTTCTTTAT
97590438 TCTGGGCTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 4 0.18
15 18 0.82
ACGTcount: A:0.16, C:0.13, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATCATGGA
Found at i:97592940 original size:27 final size:27
Alignment explanation
Indices: 97592899--97592952 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
97592889 TGTCATGTGA
* *
97592899 AATTGAATGACAAATTATTGTTACATG
1 AATTGAATGACAAATTACTATTACATG
**
97592926 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGACAAATTACTATTACATG
97592953 GCTGTATGAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (27 bp):
AATTGAATGACAAATTACTATTACATG
Found at i:97596620 original size:16 final size:17
Alignment explanation
Indices: 97596599--97596638 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
97596589 ATCGAAATTT
* *
97596599 TAAAAATGAAT-AACAA
1 TAAAAAAGAATGAAAAA
97596615 TAAAAAAGAATGAAAAA
1 TAAAAAAGAATGAAAAA
97596632 TAAAAAA
1 TAAAAAA
97596639 TATGATAACG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.75, C:0.03, G:0.07, T:0.15
Consensus pattern (17 bp):
TAAAAAAGAATGAAAAA
Found at i:97600118 original size:7 final size:7
Alignment explanation
Indices: 97600108--97600170 Score: 63
Period size: 7 Copynumber: 9.0 Consensus size: 7
97600098 ATCTCAAACC
97600108 TCAAGGT
1 TCAAGGT
*
97600115 TCAAGAT
1 TCAAGGT
*
97600122 TTAAGGT
1 TCAAGGT
*
97600129 TTAAGGT
1 TCAAGGT
97600136 TCAAGGT
1 TCAAGGT
*
97600143 TCAACGT
1 TCAAGGT
* *
97600150 TTAGGGT
1 TCAAGGT
*
97600157 TCGAGGT
1 TCAAGGT
97600164 TCAAGGT
1 TCAAGGT
97600171 AAAATAATTA
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 44 1.00
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.33
Consensus pattern (7 bp):
TCAAGGT
Found at i:97600140 original size:28 final size:28
Alignment explanation
Indices: 97600108--97600170 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
97600098 ATCTCAAACC
*
97600108 TCAAGGTTCAA-GATTTAAGGTTTAAGGT
1 TCAAGGTTCAACG-TTTAAGGTTCAAGGT
* *
97600136 TCAAGGTTCAACGTTTAGGGTTCGAGGT
1 TCAAGGTTCAACGTTTAAGGTTCAAGGT
97600164 TCAAGGT
1 TCAAGGT
97600171 AAAATAATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 30 0.97
29 1 0.03
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.33
Consensus pattern (28 bp):
TCAAGGTTCAACGTTTAAGGTTCAAGGT
Found at i:97601913 original size:23 final size:23
Alignment explanation
Indices: 97601868--97601913 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
97601858 TAAAATATAA
*
97601868 TATATATATTTTAATTGATATTT
1 TATATATATTTTAATTGAAATTT
*
97601891 TATATATTTTTATAATT-AAATTT
1 TATATATATTT-TAATTGAAATTT
97601914 AAATTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (23 bp):
TATATATATTTTAATTGAAATTT
Found at i:97617516 original size:92 final size:93
Alignment explanation
Indices: 97617388--97617562 Score: 208
Period size: 94 Copynumber: 1.9 Consensus size: 93
97617378 CACATATCTG
* * * * * *
97617388 TGCCGATGTCATGTCCCAGAAAGGGTCTTACGCTGG-CACATCACGTAGCCGATGCATGTCCCAG
1 TGCCAATGTCATGTCCCAGAAAGGATCTTACACTGGCCACATAACGTAGCCGATACATATCCCAG
97617452 ACATGTCTCACACTAGCTTACGTCTCAA
66 ACATGTCTCACACTAGCTTACGTCTCAA
* * * * * * *
97617480 TGCCAATGTCATGTCCCAGATATGATCTTATACTGGCTCTCATAATGTGGCCGATACATATCCTA
1 TGCCAATGTCATGTCCCAGAAAGGATCTTACACTGGC-CACATAACGTAGCCGATACATATCCCA
*
97617545 GACATGTCTTACACTAGC
65 GACATGTCTCACACTAGC
97617563 ACACAAATGA
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
92 30 0.45
94 37 0.55
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (93 bp):
TGCCAATGTCATGTCCCAGAAAGGATCTTACACTGGCCACATAACGTAGCCGATACATATCCCAG
ACATGTCTCACACTAGCTTACGTCTCAA
Found at i:97622256 original size:30 final size:30
Alignment explanation
Indices: 97622222--97622282 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
97622212 TCCTTAACTC
97622222 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
97622252 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
97622282 A
1 A
97622283 GTCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:97632290 original size:93 final size:93
Alignment explanation
Indices: 97632178--97632349 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
97632168 GCCCATAAGT
* *
97632178 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97632243 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
97632271 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
97632336 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
97632350 CAAATATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:97632345 original size:46 final size:46
Alignment explanation
Indices: 97632170--97632345 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
97632160 TATAACCCGC
* *
97632170 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
97632216 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
97632262 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
97632309 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
97632346 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:97634777 original size:30 final size:30
Alignment explanation
Indices: 97634732--97634820 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
97634722 CAAAGATAAC
97634732 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
97634761 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
97634791 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
97634821 TGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:97634780 original size:15 final size:15
Alignment explanation
Indices: 97634732--97634811 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
97634722 CAAAGATAAC
*
97634732 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
97634746 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
97634761 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
97634776 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
97634791 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
97634806 AAGAAA
1 AAGAAA
97634812 CCCAAGATAT
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:97634820 original size:15 final size:15
Alignment explanation
Indices: 97634743--97634820 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
97634733 AGAAAACCGA
97634743 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
97634758 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
97634772 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
97634787 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
97634803 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
97634818 ATA
1 ATA
97634821 TGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:97637859 original size:46 final size:45
Alignment explanation
Indices: 97637758--97637846 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 45
97637748 TGTAACCCGC
* *
97637758 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-ATGCCCAT
*
97637804 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCCCA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAATGCCCA
97637847 AATATCCTAG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 5 0.12
46 35 0.88
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.19
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAATGCCCAT
Found at i:97640606 original size:27 final size:27
Alignment explanation
Indices: 97640576--97640753 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
97640566 ATATTGAGTC
* * *
97640576 CGCACACTCAGTGCTATATAATCCACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
97640603 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
97640630 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
97640658 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
97640685 TGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
97640712 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
97640739 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97640754 GTACAATTCA
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:97644183 original size:58 final size:58
Alignment explanation
Indices: 97644088--97644204 Score: 216
Period size: 58 Copynumber: 2.0 Consensus size: 58
97644078 AATCATCGAT
* *
97644088 CCTTTGCAAGGGATACTTGTTCTTCACAGTCGTTTTGTTGAGCTGTCGGTAGTCTATG
1 CCTTTGCAAGGGATACTTCTTCTTCACAGTCGCTTTGTTGAGCTGTCGGTAGTCTATG
97644146 CCTTTGCAAGGGATACTTCTTCTTCACAGTCGCTTTGTTGAGCTGTCGGTAGTCTATG
1 CCTTTGCAAGGGATACTTCTTCTTCACAGTCGCTTTGTTGAGCTGTCGGTAGTCTATG
97644204 C
1 C
97644205 ACAATCTCAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.15, C:0.21, G:0.25, T:0.38
Consensus pattern (58 bp):
CCTTTGCAAGGGATACTTCTTCTTCACAGTCGCTTTGTTGAGCTGTCGGTAGTCTATG
Found at i:97646439 original size:40 final size:41
Alignment explanation
Indices: 97646409--97646620 Score: 319
Period size: 40 Copynumber: 5.3 Consensus size: 41
97646399 GCTACTCGTT
* *
97646409 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTATAGTAACTCGCA
97646449 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTATAGTAACTCGCA
97646489 CAAATGCCTTCGGGACTTAACCCGGATTA-AGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTATAGTAACTCGCA
*
97646529 CAAATGCCTTCGGGACTTAACCCAGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTATAGTAACTCGCA
* * * *
97646569 CCAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTATAGTAACTCGCA
97646608 CAAATGCCTTCGG
1 CAAATGCCTTCGG
97646621 ATCTTAGTCC
Statistics
Matches: 160, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 33 0.21
40 125 0.78
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAACCCGGATTATAGTAACTCGCA
Done.