Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 288 of 373
Found at i:97646664 original size:119 final size:120
Alignment explanation
Indices: 97646409--97646666 Score: 319
Period size: 119 Copynumber: 2.2 Consensus size: 120
97646399 GCTACTCGTT
* * * *
97646409 CAAATGCCTTCGGGACATAGCCC-GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCAGGACTTAACCCAGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
97646473 GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTAAGTAACTCGCA
65 GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTAAGTAACTAGCA
* * *
97646529 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCAGGACTTAACCCAGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* ** * *
97646593 AATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGA-TATGGTCACTTAGCA
66 AATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTA-AGTAAC-TAGCA
97646649 CAAA-GCCTTCAGGACTTA
1 CAAATGCCTTCAGGACTTA
97646667 GCCTGGACAT
Statistics
Matches: 121, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
118 5 0.04
119 59 0.49
120 54 0.45
121 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCAGGACTTAACCCAGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTAAGTAACTAGCA
Found at i:97647869 original size:56 final size:56
Alignment explanation
Indices: 97647802--97647921 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
97647792 TATTAGTTTA
97647802 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
97647858 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
97647914 TTGCCCAT
1 TTGCCCAT
97647922 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:97654432 original size:40 final size:40
Alignment explanation
Indices: 97654395--97654659 Score: 358
Period size: 40 Copynumber: 6.7 Consensus size: 40
97654385 GCTACTCGTT
* *
97654395 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
97654435 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
97654475 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
97654515 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
97654555 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
97654594 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
97654635 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
97654660 CATCATTCGA
Statistics
Matches: 205, Mismatches: 15, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
38 2 0.01
39 32 0.16
40 158 0.77
41 13 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:97654650 original size:119 final size:121
Alignment explanation
Indices: 97654395--97654659 Score: 369
Period size: 119 Copynumber: 2.2 Consensus size: 121
97654385 GCTACTCGTT
*
97654395 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * *
97654459 GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA
* * *
97654515 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* ** * *
97654578 GAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
66 GAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCA
97654635 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
97654660 CATCATTCGA
Statistics
Matches: 129, Mismatches: 13, Indels: 7
0.87 0.09 0.05
Matches are distributed among these distances:
118 3 0.02
119 68 0.53
120 56 0.43
121 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (121 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA
Found at i:97655853 original size:56 final size:56
Alignment explanation
Indices: 97655786--97655905 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
97655776 TATTAGTTTA
97655786 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
97655842 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
97655898 TTGCCCAT
1 TTGCCCAT
97655906 CATCCCTAGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:97668774 original size:31 final size:31
Alignment explanation
Indices: 97668731--97668790 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
97668721 CCAACCATGA
* *
97668731 GAGTTATTCTATTTTGGTCACTCAATTATGC
1 GAGTGATTCTATTTTAGTCACTCAATTATGC
*
97668762 GAGTGATTCTATTTTAGTCACTTAATTAT
1 GAGTGATTCTATTTTAGTCACTCAATTAT
97668791 AAAGTTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.25, C:0.13, G:0.15, T:0.47
Consensus pattern (31 bp):
GAGTGATTCTATTTTAGTCACTCAATTATGC
Found at i:97672932 original size:26 final size:26
Alignment explanation
Indices: 97672884--97672934 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
97672874 AATACAAAAT
* * *
97672884 GTAAGAAATGCATATTATTCATTGGC
1 GTAAGAAATACATACTATCCATTGGC
*
97672910 GTAAGAAATACGTACTATCCATTGG
1 GTAAGAAATACATACTATCCATTGG
97672935 TGATATAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (26 bp):
GTAAGAAATACATACTATCCATTGGC
Found at i:97673050 original size:36 final size:36
Alignment explanation
Indices: 97672964--97673055 Score: 103
Period size: 36 Copynumber: 2.6 Consensus size: 36
97672954 TGCAAAAACA
** *
97672964 TTCATTGATGATATAAAATGCAAGAGGTGTAGATCG
1 TTCATTGATGATATAAAATGCAAGAAATGTAAATCG
* ** * *
97673000 TCCATTGACAATATAAAATGGAAGAAATGTAAATTG
1 TTCATTGATGATATAAAATGCAAGAAATGTAAATCG
*
97673036 TTCATTGGTGATATAAAATG
1 TTCATTGATGATATAAAATG
97673056 TAAGTCGTGA
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.32
Consensus pattern (36 bp):
TTCATTGATGATATAAAATGCAAGAAATGTAAATCG
Found at i:97673425 original size:29 final size:29
Alignment explanation
Indices: 97673392--97673478 Score: 104
Period size: 29 Copynumber: 3.0 Consensus size: 29
97673382 CAAGGATGAC
*
97673392 GAGTGTGACGACCC-AGCCAGGTTGTTGAT
1 GAGTGTGGCGACCCGA-CCAGGTTGTTGAT
* * * *
97673421 GAGTGTGGCAACCCGACCAAGTTGTTTAC
1 GAGTGTGGCGACCCGACCAGGTTGTTGAT
*
97673450 GAGTATGGCGACCCGACCAGGTTGTTGAT
1 GAGTGTGGCGACCCGACCAGGTTGTTGAT
97673479 AGATATAATG
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
29 46 0.98
30 1 0.02
ACGTcount: A:0.22, C:0.22, G:0.32, T:0.24
Consensus pattern (29 bp):
GAGTGTGGCGACCCGACCAGGTTGTTGAT
Found at i:97675210 original size:63 final size:63
Alignment explanation
Indices: 97675137--97675265 Score: 206
Period size: 63 Copynumber: 2.0 Consensus size: 63
97675127 CAACGTGATT
*
97675137 TATAACTTAAATTTGGTAATTCAAACTCCGTTAAAATGCACCTCATT-CTCGATGTGATAAGAA
1 TATAACTTAAATTTGGTAATTCAAACTCCATTAAAATGCACCTCATTCCT-GATGTGATAAGAA
* * *
97675200 TATAACTTAAATTTGGTAATTCAAACTCTATTAAGATGCGCCTCATTCCTGATGTGATAAGAA
1 TATAACTTAAATTTGGTAATTCAAACTCCATTAAAATGCACCTCATTCCTGATGTGATAAGAA
97675263 TAT
1 TAT
97675266 CTCCATGTGA
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
63 59 0.97
64 2 0.03
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (63 bp):
TATAACTTAAATTTGGTAATTCAAACTCCATTAAAATGCACCTCATTCCTGATGTGATAAGAA
Found at i:97676419 original size:16 final size:16
Alignment explanation
Indices: 97676398--97676437 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
97676388 TGAATTACTG
97676398 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
97676414 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
97676430 ATTACAGC
1 ATTACAGC
97676438 GAACTAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.30, C:0.30, G:0.05, T:0.35
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:97676889 original size:16 final size:16
Alignment explanation
Indices: 97676868--97676900 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
97676858 TTATGCTTTA
97676868 TTTGGCAACCATATTT
1 TTTGGCAACCATATTT
97676884 TTTGGCAACCATATTT
1 TTTGGCAACCATATTT
97676900 T
1 T
97676901 CTTTCCAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.45
Consensus pattern (16 bp):
TTTGGCAACCATATTT
Found at i:97683767 original size:20 final size:19
Alignment explanation
Indices: 97683710--97683785 Score: 77
Period size: 20 Copynumber: 3.9 Consensus size: 19
97683700 AATTATACAT
97683710 AATAA-ATAATTAATAATAA
1 AATAATATAA-TAATAATAA
* *
97683729 AATGATATAGTAA-AATAA
1 AATAATATAATAATAATAA
97683747 AATAATATAATGAATAATAA
1 AATAATATAAT-AATAATAA
97683767 AA-AGATATAATATATAATA
1 AATA-ATATAATA-ATAATA
97683786 TTTTTACACA
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
18 14 0.29
19 11 0.23
20 23 0.48
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.30
Consensus pattern (19 bp):
AATAATATAATAATAATAA
Found at i:97685390 original size:45 final size:45
Alignment explanation
Indices: 97685335--97685916 Score: 193
Period size: 45 Copynumber: 12.9 Consensus size: 45
97685325 CCATGCTGAA
* *
97685335 ATCTTTGATCTGCTCCCCGCCTAATACAGAGACGCCAAATCTATC
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATC
* * * * * * * * *
97685380 ATCTTCGATCTGCT--TCGATGTAAACACACAAATGTCAGATCT-GC
1 ATCTTCGATCTGCTCCCCG-TCT-AATACAGAGACGCCAAATCTATC
*
97685424 TATCCTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATC
1 -ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATC
* ** * * * * * *
97685470 ATCTTCGATCT-AT-TTCGATGTAA-ACACACGAATGTCAGATCT-GC
1 ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAAATCTATC
* * * * *
97685514 TATTTTCAATCTACTCCCCGTCTATTACAGAGACGCCAAATCTGTC
1 -ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATC
* * * * * * *
97685560 ATCTTCGATCTGCT--TCGATGTAA-ACATACGAATGTCAGATCT-GC
1 ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAAATCTATC
** * * * * *
97685604 TATCTTCGATCTGCTCCTTGTCTAATACAAAGACTCTAAATCTGTT
1 -ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATC
* * * * * * *
97685650 ATCTTCGATCTACT--TCGATGTAA-ACACACGAATGTCAGATCTA-C
1 ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAAATCTATC
* *
97685694 TATCTTCGATCTACTCCCCGTCTAATATAGAGACGCCAAATCTATC
1 -ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATC
* * * * * *
97685740 ATCTTCGATCTGCT--TCGATGTAA-ACACACGAATGTCAGATCTA-C
1 ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAAATCTATC
* * *
97685784 TATCTTTGATCTGCTCTCCGTCTAATACAGAGACGCCAAATCTGTC
1 -ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATC
* * * * * * *
97685830 ATCTTCGATCTGCT--TCGATGTAA-ACACACGAATGTCAGATCT-GC
1 ATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAAATCTATC
* *
97685874 TATCTTCAATCTGCTCCCCATCTAATACAGAGACGCCAAATCT
1 -ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCT
97685917 GCTATCAGTG
Statistics
Matches: 378, Mismatches: 114, Indels: 90
0.65 0.20 0.15
Matches are distributed among these distances:
43 31 0.08
44 31 0.08
45 255 0.67
46 31 0.08
47 30 0.08
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (45 bp):
ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATC
Found at i:97685917 original size:90 final size:90
Alignment explanation
Indices: 97685335--97685917 Score: 905
Period size: 90 Copynumber: 6.5 Consensus size: 90
97685325 CCATGCTGAA
* * *
97685335 ATCTTTGATCTGCTCCCCGCCTAATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATG
*
97685400 TAAACACACAAATGTCAGATCTGCT
66 TAAACACACGAATGTCAGATCTGCT
* * **
97685425 ATCCTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTATTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATG
97685490 TAAACACACGAATGTCAGATCTGCT
66 TAAACACACGAATGTCAGATCTGCT
* * * *
97685515 ATTTTCAATCTACTCCCCGTCTATTACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATG
*
97685580 TAAACATACGAATGTCAGATCTGCT
66 TAAACACACGAATGTCAGATCTGCT
** * * * * *
97685605 ATCTTCGATCTGCTCCTTGTCTAATACAAAGACTCTAAATCTGTTATCTTCGATCTACTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATG
*
97685670 TAAACACACGAATGTCAGATCTACT
66 TAAACACACGAATGTCAGATCTGCT
* * *
97685695 ATCTTCGATCTACTCCCCGTCTAATATAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATG
*
97685760 TAAACACACGAATGTCAGATCTACT
66 TAAACACACGAATGTCAGATCTGCT
* *
97685785 ATCTTTGATCTGCTCTCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATG
97685850 TAAACACACGAATGTCAGATCTGCT
66 TAAACACACGAATGTCAGATCTGCT
* *
97685875 ATCTTCAATCTGCTCCCCATCTAATACAGAGACGCCAAATCTG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG
97685918 CTATCAGTGA
Statistics
Matches: 445, Mismatches: 48, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
90 445 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (90 bp):
ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATG
TAAACACACGAATGTCAGATCTGCT
Found at i:97693908 original size:20 final size:18
Alignment explanation
Indices: 97693883--97693921 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
97693873 TTTCAGGTTT
97693883 TCTTTCTCTTACACTCTCTC
1 TCTTTCTC-T-CACTCTCTC
97693903 TCTTTCTCTCACTCTCTC
1 TCTTTCTCTCACTCTCTC
97693921 T
1 T
97693922 GTAATTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.53
19 1 0.05
20 8 0.42
ACGTcount: A:0.08, C:0.41, G:0.00, T:0.51
Consensus pattern (18 bp):
TCTTTCTCTCACTCTCTC
Found at i:97697902 original size:3 final size:3
Alignment explanation
Indices: 97697890--97697969 Score: 51
Period size: 3 Copynumber: 26.7 Consensus size: 3
97697880 AAAATTATTC
* * *
97697890 ATA ATAA ATA ATA ATA ATA A-A ATG AT- ATA GTA A-A ATA AAA ATA
1 ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
97697933 AT- ATA ATGA ATA ATA AAA AGA TATA ATA TATA ATA AT
1 ATA ATA AT-A ATA ATA ATA ATA -ATA ATA -ATA ATA AT
97697970 TTTTACACAT
Statistics
Matches: 61, Mismatches: 8, Indels: 16
0.72 0.09 0.19
Matches are distributed among these distances:
2 8 0.13
3 42 0.69
4 11 0.18
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:97697927 original size:27 final size:26
Alignment explanation
Indices: 97697890--97697950 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
97697880 AAAATTATTC
*
97697890 ATAAT-AAATAATAATAATAAAATGA
1 ATAATAAAATAAAAATAATAAAATGA
* *
97697915 TATAGTAAAATAAAAATAATATAATGA
1 -ATAATAAAATAAAAATAATAAAATGA
97697942 ATAATAAAA
1 ATAATAAAA
97697951 AGATATAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 12 0.40
27 18 0.60
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (26 bp):
ATAATAAAATAAAAATAATAAAATGA
Found at i:97697928 original size:18 final size:20
Alignment explanation
Indices: 97697897--97697968 Score: 71
Period size: 20 Copynumber: 3.7 Consensus size: 20
97697887 TTCATAATAA
97697897 ATAAT-AATAATAAAATGAT
1 ATAATGAATAATAAAATGAT
* *
97697916 ATAGT-AA-AATAAAAATAAT
1 ATAATGAATAAT-AAAATGAT
*
97697935 ATAATGAATAATAAAAAGAT
1 ATAATGAATAATAAAATGAT
97697955 ATAAT-ATATAATAA
1 ATAATGA-ATAATAA
97697969 TTTTTACACA
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
18 3 0.07
19 18 0.41
20 20 0.45
21 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (20 bp):
ATAATGAATAATAAAATGAT
Found at i:97697936 original size:19 final size:21
Alignment explanation
Indices: 97697892--97697968 Score: 69
Period size: 19 Copynumber: 4.0 Consensus size: 21
97697882 AATTATTCAT
97697892 AATAA-ATAAT-AATAAT-AA
1 AATAATATAATGAATAATAAA
* *
97697910 AATGATATAGT-AA-AATAAA
1 AATAATATAATGAATAATAAA
97697929 AATAATATAATGAATAATAAA
1 AATAATATAATGAATAATAAA
*
97697950 AA-GATATAAT-ATATAATAA
1 AATAATATAATGA-ATAATAA
97697969 TTTTTACACA
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
18 7 0.14
19 18 0.37
20 16 0.33
21 8 0.16
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (21 bp):
AATAATATAATGAATAATAAA
Found at i:97702208 original size:15 final size:15
Alignment explanation
Indices: 97702188--97702222 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
97702178 TAAGAAGTTG
97702188 TTAAATCTGAGGTAA
1 TTAAATCTGAGGTAA
97702203 TTAAATCTGAGGTAA
1 TTAAATCTGAGGTAA
97702218 TTAAA
1 TTAAA
97702223 CTTCTAGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.43, C:0.06, G:0.17, T:0.34
Consensus pattern (15 bp):
TTAAATCTGAGGTAA
Found at i:97705503 original size:16 final size:17
Alignment explanation
Indices: 97705474--97705518 Score: 58
Period size: 16 Copynumber: 2.7 Consensus size: 17
97705464 AAACCCCTAC
*
97705474 TATTCATCTTTTAT-TT
1 TATTTATCTTTTATCTT
97705490 ATATTTAT-TTTTATCTT
1 -TATTTATCTTTTATCTT
97705507 TATTTATCTTTT
1 TATTTATCTTTT
97705519 TAACTTACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 13 0.52
17 12 0.48
ACGTcount: A:0.20, C:0.09, G:0.00, T:0.71
Consensus pattern (17 bp):
TATTTATCTTTTATCTT
Found at i:97717078 original size:68 final size:68
Alignment explanation
Indices: 97717006--97717181 Score: 166
Period size: 68 Copynumber: 2.6 Consensus size: 68
97716996 CATCATGTGT
** * * *
97717006 ACAAGAGAGCTATGAGATACTATGTAGTAGCTAGGTCACATGTGTGA-T-ACGGGATGTATC-CC
1 ACAAGAGAGCTATGAGATA-TAAAT-GTAGCTAGGTCACATGTGTGATTCAAGGGAAGGA-CACC
97717068 ATGTAG
63 ATGTAG
* * * *
97717074 ACAAGAGAGCTACGGGAGAGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTGAAGGACACC
1 ACAAGAGAGCTA--TGAGATATAAATGTAGCTAGGTCACATGTGTGATT-CAAGGGAAGGACACC
97717139 ATGTAG
63 ATGTAG
*
97717145 ACAAGAGAGCTATGAG--ATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTATGAGATATAAATGTAGCTAGGTCACATG
97717182 GGTGGTACTA
Statistics
Matches: 90, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
66 13 0.14
67 6 0.07
68 32 0.36
69 7 0.08
70 6 0.07
71 26 0.29
ACGTcount: A:0.34, C:0.15, G:0.29, T:0.23
Consensus pattern (68 bp):
ACAAGAGAGCTATGAGATATAAATGTAGCTAGGTCACATGTGTGATTCAAGGGAAGGACACCATG
TAG
Found at i:97719928 original size:18 final size:18
Alignment explanation
Indices: 97719907--97719945 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
97719897 TCCTCTTCTC
*
97719907 CTTCCTCACCCTCAATTT
1 CTTCCTCACCATCAATTT
**
97719925 CTTCCTCTTCATCAATTT
1 CTTCCTCACCATCAATTT
97719943 CTT
1 CTT
97719946 ACTCCTCCTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.15, C:0.38, G:0.00, T:0.46
Consensus pattern (18 bp):
CTTCCTCACCATCAATTT
Found at i:97731143 original size:15 final size:16
Alignment explanation
Indices: 97731123--97731152 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
97731113 GAAAATTGCC
97731123 AAAATGGG-CTAAATA
1 AAAATGGGACTAAATA
97731138 AAAATGGGACTAAAT
1 AAAATGGGACTAAAT
97731153 TGAAATATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (16 bp):
AAAATGGGACTAAATA
Found at i:97731561 original size:16 final size:17
Alignment explanation
Indices: 97731540--97731573 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
97731530 AATGTCTAGA
97731540 AAAATTA-TTAATTGAG
1 AAAATTACTTAATTGAG
97731556 AAAATTATCTTAATTGAG
1 AAAATTA-CTTAATTGAG
97731574 GGGTTAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
18 9 0.56
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (17 bp):
AAAATTACTTAATTGAG
Found at i:97734277 original size:31 final size:31
Alignment explanation
Indices: 97734239--97734302 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
97734229 GGGTAGGAAG
97734239 CAAGGAATTACTCAAGGAAAGCCGATTGATC
1 CAAGGAATTACTCAAGGAAAGCCGATTGATC
97734270 CAAGGAATTACTCAAGGAAAGCCGATTGATC
1 CAAGGAATTACTCAAGGAAAGCCGATTGATC
97734301 CA
1 CA
97734303 TCTTAGAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (31 bp):
CAAGGAATTACTCAAGGAAAGCCGATTGATC
Found at i:97735297 original size:19 final size:19
Alignment explanation
Indices: 97735262--97735299 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
97735252 TTGCAACTTA
*
97735262 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
97735281 AATTTTTCA-TTTATTTTCT
1 AATTTTT-ATTTTATTTTCT
97735300 TCTGATAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:97739168 original size:22 final size:23
Alignment explanation
Indices: 97739146--97739197 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
97739136 ATGTTTTTAC
97739146 TTTTATTTTACTTTAAGACTACT
1 TTTTATTTTACTTTAAGACTACT
*
97739169 TTTTATTTTTCTTTAAG-CTTA-T
1 TTTTATTTTACTTTAAGAC-TACT
97739191 TTTTATT
1 TTTTATT
97739198 AGGTTTTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 9 0.33
23 18 0.67
ACGTcount: A:0.21, C:0.10, G:0.04, T:0.65
Consensus pattern (23 bp):
TTTTATTTTACTTTAAGACTACT
Found at i:97746899 original size:26 final size:25
Alignment explanation
Indices: 97746844--97746899 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
97746834 AAAAATAAAA
*
97746844 GTAATAAAAAAAGTTAACATACTAT
1 GTAATAAAAAAAGTTAACACACTAT
* * *
97746869 CTAATAAAAAAAATTTAACACATTAT
1 GTAAT-AAAAAAAGTTAACACACTAT
97746895 GTAAT
1 GTAAT
97746900 TCATTAGTCT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.55, C:0.09, G:0.05, T:0.30
Consensus pattern (25 bp):
GTAATAAAAAAAGTTAACACACTAT
Found at i:97756919 original size:17 final size:17
Alignment explanation
Indices: 97756897--97756931 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
97756887 TTCAAGATTG
*
97756897 AATACATAAAATTTGAA
1 AATACATAAAATATGAA
*
97756914 AATACATATAATATGAA
1 AATACATAAAATATGAA
97756931 A
1 A
97756932 GGAGTAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.29
Consensus pattern (17 bp):
AATACATAAAATATGAA
Found at i:97761287 original size:46 final size:45
Alignment explanation
Indices: 97761221--97761317 Score: 149
Period size: 46 Copynumber: 2.1 Consensus size: 45
97761211 TTAGCACTCG
* *
97761221 ATATATTATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTAGTA
1 ATATATTATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTAGTA
*
97761266 ATATATATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
1 ATATAT-TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTAGTA
*
97761312 CTATAT
1 ATATAT
97761318 CCGGGCTTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
45 6 0.13
46 41 0.87
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35
Consensus pattern (45 bp):
ATATATTATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTAGTA
Found at i:97764212 original size:22 final size:22
Alignment explanation
Indices: 97764184--97764227 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
97764174 TTTGAGAGAG
97764184 AAAGGGAAGAAACAATTCTATT
1 AAAGGGAAGAAACAATTCTATT
97764206 AAAGGGAAGAAACAATTCTATT
1 AAAGGGAAGAAACAATTCTATT
97764228 TCTGTATCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.09, G:0.18, T:0.23
Consensus pattern (22 bp):
AAAGGGAAGAAACAATTCTATT
Found at i:97767736 original size:26 final size:26
Alignment explanation
Indices: 97767700--97767753 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
97767690 TTCACAGTCC
97767700 CTGTGGGTACGATAACTCGACATTTA
1 CTGTGGGTACGATAACTCGACATTTA
97767726 CTGTGGGTACGATAACTCGACATTTA
1 CTGTGGGTACGATAACTCGACATTTA
97767752 CT
1 CT
97767754 TGTCACTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.31
Consensus pattern (26 bp):
CTGTGGGTACGATAACTCGACATTTA
Found at i:97769757 original size:27 final size:27
Alignment explanation
Indices: 97769727--97769779 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
97769717 GGCTATATTT
97769727 GAAATGATAGATCAAGGAAATCAAGAG
1 GAAATGATAGATCAAGGAAATCAAGAG
*
97769754 GAAATTATAGATCAAGGAAATCAAGA
1 GAAATGATAGATCAAGGAAATCAAGA
97769780 TTTGGGCTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.53, C:0.08, G:0.23, T:0.17
Consensus pattern (27 bp):
GAAATGATAGATCAAGGAAATCAAGAG
Found at i:97776774 original size:26 final size:26
Alignment explanation
Indices: 97776735--97776842 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
97776725 TGATACAAAT
97776735 TGATAAT-GAGTTAGGTAAATGTTCCA
1 TGATAATGGA-TTAGGTAAATGTTCCA
*
97776761 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
97776787 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
97776813 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
97776839 TGAT
1 TGAT
97776843 GAGAATTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 75 0.97
27 2 0.03
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:97782971 original size:26 final size:26
Alignment explanation
Indices: 97782932--97783039 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
97782922 TGATACAAAT
97782932 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
97782958 TGATAATGGATTAGGTAAATATTCCG
1 TGATAATGGGTTAGGTAAATGTTCCA
97782984 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
97783010 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
97783036 TGAT
1 TGAT
97783040 GGGAATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:97790351 original size:11 final size:11
Alignment explanation
Indices: 97790335--97790360 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
97790325 CAATCATCCA
97790335 TCATCCCTCAT
1 TCATCCCTCAT
97790346 TCATCCCTCAT
1 TCATCCCTCAT
97790357 TCAT
1 TCAT
97790361 TCACATCTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.42, G:0.00, T:0.38
Consensus pattern (11 bp):
TCATCCCTCAT
Found at i:97791060 original size:45 final size:45
Alignment explanation
Indices: 97790995--97791084 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
97790985 TGTTACCTCA
* *
97790995 CATAGTCTTTTATGTGCTTATTAGATTTAATTAATCGTTTGAATT
1 CATAGTCTTTTATGTACTTATTAGATTTAATTAATCATTTGAATT
*
97791040 CATAGTCTTTTATGTACTTATTCGATTTAATTAATCATTTGAATT
1 CATAGTCTTTTATGTACTTATTAGATTTAATTAATCATTTGAATT
97791085 AACATAGGGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.28, C:0.10, G:0.11, T:0.51
Consensus pattern (45 bp):
CATAGTCTTTTATGTACTTATTAGATTTAATTAATCATTTGAATT
Found at i:97794973 original size:52 final size:52
Alignment explanation
Indices: 97794892--97794995 Score: 154
Period size: 52 Copynumber: 2.0 Consensus size: 52
97794882 AACTCGGATA
* * * *
97794892 GCTGCTTTTAAACCAACTCTTCAAAAAATGCTAGTTGTATTAACAGCTTCTT
1 GCTGCTCTTAAACCAACTCTTCAAAAAATGCTAGCTATATTAACAACTTCTT
* *
97794944 GCTGCTCTTAAACCACCTCTTCAACAAATGCTAGCTATATTAACAACTTCTT
1 GCTGCTCTTAAACCAACTCTTCAAAAAATGCTAGCTATATTAACAACTTCTT
97794996 TCTAACTACC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.31, C:0.25, G:0.10, T:0.35
Consensus pattern (52 bp):
GCTGCTCTTAAACCAACTCTTCAAAAAATGCTAGCTATATTAACAACTTCTT
Found at i:97800743 original size:45 final size:42
Alignment explanation
Indices: 97800629--97800748 Score: 118
Period size: 45 Copynumber: 2.8 Consensus size: 42
97800619 CTTACATCAC
* *
97800629 ATATCGATGCCACTGTCCAAGACAG-GGTCTTACACAAATCAA
1 ATATCGATGCCAATGTCCAAGAC-GTGGTCTTACACAAACCAA
* * * * *
97800671 ATA-CGATGTCGATGTCCCAGACATGGTCTTACACGTAACCACA
1 ATATCGATGCCAATGTCCAAGACGTGGTCTTACAC-AAACCA-A
*
97800714 TATATCGATGCCAATGTCCTAGACGTGGTCTTACA
1 -ATATCGATGCCAATGTCCAAGACGTGGTCTTACA
97800749 TGAGAACACA
Statistics
Matches: 62, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
41 25 0.40
42 7 0.11
43 1 0.02
44 3 0.05
45 26 0.42
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (42 bp):
ATATCGATGCCAATGTCCAAGACGTGGTCTTACACAAACCAA
Found at i:97802437 original size:47 final size:47
Alignment explanation
Indices: 97802306--97802486 Score: 197
Period size: 47 Copynumber: 3.8 Consensus size: 47
97802296 GATTTTCATA
* * * **
97802306 TAAGACCATAGCTGGGCTATGGCATCGGTGTGATATGAGCTT-TCGCA
1 TAAGACCATATCTGGGATATGGCATCGGTGTGATATGTGCTTCT-GTG
97802353 TAAGACCATATCTGGGATATGGCATCGGTGTGATATGTGCTTCTGTG
1 TAAGACCATATCTGGGATATGGCATCGGTGTGATATGTGCTTCTGTG
* * *
97802400 TAAGACCATATCTGGGATATGGCATCAGTGTGATATGTG-ATCCGTG
1 TAAGACCATATCTGGGATATGGCATCGGTGTGATATGTGCTTCTGTG
* * * *
97802446 TAAGGCCATGA-CTGGGCTATGGCTTTGGTGTGTGATATGTG
1 TAAGACCAT-ATCTGGGATATGGC-ATCG-GTGTGATATGTG
97802487 ACTATGTGCA
Statistics
Matches: 117, Mismatches: 13, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
46 24 0.21
47 80 0.68
48 13 0.11
ACGTcount: A:0.22, C:0.15, G:0.31, T:0.31
Consensus pattern (47 bp):
TAAGACCATATCTGGGATATGGCATCGGTGTGATATGTGCTTCTGTG
Found at i:97806013 original size:28 final size:28
Alignment explanation
Indices: 97805981--97806045 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
97805971 ATTTACTAGA
*
97805981 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
97806009 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
*
97806037 ATATCCCTA
1 ATACCCCTA
97806046 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:97806192 original size:28 final size:28
Alignment explanation
Indices: 97806152--97806225 Score: 123
Period size: 28 Copynumber: 2.6 Consensus size: 28
97806142 GGAAGCGTCT
97806152 TGGTGGCTA-TGCCACAAATTATCTGTTC
1 TGGTGGC-ACTGCCACAAATTATCTGTTC
*
97806180 TGGTGGCCCTGCCACAAATTATCTGTTC
1 TGGTGGCACTGCCACAAATTATCTGTTC
97806208 TGGTGGCACTGCCACAAA
1 TGGTGGCACTGCCACAAA
97806226 ATATATGTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.30
Consensus pattern (28 bp):
TGGTGGCACTGCCACAAATTATCTGTTC
Found at i:97806734 original size:18 final size:18
Alignment explanation
Indices: 97806694--97806735 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
97806684 GTAATAAGGC
*
97806694 ATTTTAATTATTTTTATG
1 ATTTTAATTACTTTTATG
* *
97806712 GTTTTAATTACTTTTATT
1 ATTTTAATTACTTTTATG
97806730 ATTTTA
1 ATTTTA
97806736 TTTTACTATG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.67
Consensus pattern (18 bp):
ATTTTAATTACTTTTATG
Found at i:97812788 original size:72 final size:71
Alignment explanation
Indices: 97812678--97812811 Score: 180
Period size: 72 Copynumber: 1.9 Consensus size: 71
97812668 TGTTAATGCG
** * *
97812678 TTGGGGTCTGGGTACTGACTTTGTGTATAAACCTGTGAGTAGCTCAATAAGCTGGCATTACATGA
1 TTGGGGTCCAGGTACTGACTTTGTGTACAAACCTGTGAGTAGCTCAA-AAGCGGGCATTACATGA
97812743 TAATGTT
65 TAATGTT
* * *
97812750 TTGGGGTCCAGGTGCTGACTTTGTGTACAGA-CTCGTGAGTAGCTCAAATGCGGGCATTACAT
1 TTGGGGTCCAGGTACTGACTTTGTGTACAAACCT-GTGAGTAGCTCAAAAGCGGGCATTACAT
97812812 AATATGTGGT
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
71 15 0.28
72 39 0.72
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.32
Consensus pattern (71 bp):
TTGGGGTCCAGGTACTGACTTTGTGTACAAACCTGTGAGTAGCTCAAAAGCGGGCATTACATGAT
AATGTT
Found at i:97826047 original size:40 final size:40
Alignment explanation
Indices: 97825990--97826088 Score: 128
Period size: 40 Copynumber: 2.5 Consensus size: 40
97825980 TTGAACACTA
* **
97825990 GCTATGACACG-GACGTGTCTAGGCTGTGTGAGGGACATGG
1 GCTATGACACGAG-CGTGTCTAGGCCGTGTGAGGGACACAG
*
97826030 GCTATGACACGAGCGTGTTTAGGCCGTGTGAGGGACACAG
1 GCTATGACACGAGCGTGTCTAGGCCGTGTGAGGGACACAG
*
97826070 GCTAGGGACACGAGCGTGT
1 GCTA-TGACACGAGCGTGT
97826089 ATTCAGCCGT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
40 38 0.73
41 14 0.27
ACGTcount: A:0.21, C:0.19, G:0.39, T:0.20
Consensus pattern (40 bp):
GCTATGACACGAGCGTGTCTAGGCCGTGTGAGGGACACAG
Found at i:97827188 original size:13 final size:13
Alignment explanation
Indices: 97827166--97827198 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
97827156 TTTCAAACCA
97827166 AAATAC-ATAAGT
1 AAATACAATAAGT
97827178 AAATACAATAAGT
1 AAATACAATAAGT
*
97827191 AATTACAA
1 AAATACAA
97827199 CTTCAACTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.61, C:0.09, G:0.06, T:0.24
Consensus pattern (13 bp):
AAATACAATAAGT
Found at i:97828250 original size:27 final size:27
Alignment explanation
Indices: 97828177--97828263 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 27
97828167 ATGGAGGAAA
*
97828177 TCCTTTCATGATTA-GCC-CAAAAGCGT
1 TCCTTTCAT-ATTATGCCACAAAGGCGT
* ** *
97828203 TCCTTTCATATTGTGGTACAAAGGCTT
1 TCCTTTCATATTATGCCACAAAGGCGT
*
97828230 TCCTTTCATATTATGCCACAAAGTCGT
1 TCCTTTCATATTATGCCACAAAGGCGT
97828257 TCCTTTC
1 TCCTTTC
97828264 CTAACTTGTT
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
25 3 0.06
26 10 0.20
27 36 0.73
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (27 bp):
TCCTTTCATATTATGCCACAAAGGCGT
Found at i:97830563 original size:27 final size:27
Alignment explanation
Indices: 97830533--97830710 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
97830523 ATATTGAGTC
* * * *
97830533 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
97830560 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
97830587 CGCACACTTAGTGCTACGTAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
97830615 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
97830642 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
97830669 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
97830696 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97830711 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:97830672 original size:82 final size:81
Alignment explanation
Indices: 97830554--97830709 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
97830544 TGCTATATAA
* * *
97830554 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACGTAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
97830619 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
97830636 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
97830700 CACTTAGTGC
65 CACTTAGTGC
97830710 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:97847209 original size:28 final size:28
Alignment explanation
Indices: 97847178--97847317 Score: 81
Period size: 28 Copynumber: 5.0 Consensus size: 28
97847168 TCATTTACCG
*
97847178 TGTCCCATCGAACTTACCTCGTGTTTAC
1 TGTCCCATCGGACTTACCTCGTGTTTAC
** *
97847206 TGTCTTGAT-GGACTTACCTCATGTTTAC
1 TGTC-CCATCGGACTTACCTCGTGTTTAC
* * ** * *
97847234 TATCTCGGCGGACATACCTCGTGTGTAC
1 TGTCCCATCGGACTTACCTCGTGTTTAC
* * **
97847262 TGTCCC-TGCAGACTTACCTCATGTTTGT
1 TGTCCCAT-CGGACTTACCTCGTGTTTAC
* *
97847290 TGTCCCGA-CAGACTTACC-CATGTTTAC
1 TGTCCC-ATCGGACTTACCTCGTGTTTAC
97847317 T
1 T
97847318 ATCCAAATCT
Statistics
Matches: 85, Mismatches: 22, Indels: 11
0.72 0.19 0.09
Matches are distributed among these distances:
27 9 0.11
28 74 0.87
29 2 0.02
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.36
Consensus pattern (28 bp):
TGTCCCATCGGACTTACCTCGTGTTTAC
Found at i:97865858 original size:27 final size:27
Alignment explanation
Indices: 97865823--97865880 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
97865813 TTCCAGTGTA
97865823 ACCCCGTGTTT-CTTATCCCAGTAAACT
1 ACCCCGTGTTTACTT-TCCCAGTAAACT
* * *
97865850 ACCCGGTGTTTACTTTCTCAGTAGACT
1 ACCCCGTGTTTACTTTCCCAGTAAACT
97865877 ACCC
1 ACCC
97865881 TGGTTGTCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 24 0.89
28 3 0.11
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.33
Consensus pattern (27 bp):
ACCCCGTGTTTACTTTCCCAGTAAACT
Found at i:97865998 original size:35 final size:35
Alignment explanation
Indices: 97865959--97866035 Score: 82
Period size: 35 Copynumber: 2.2 Consensus size: 35
97865949 ACCGTCGTTG
* * * * *
97865959 TGGTGTCGCCCCATAGAGCCTACTAACTGTCGTCT
1 TGGTGTCGCCCCATAGAACCTAATAACCGTCATCA
* * *
97865994 TGGTGTTGCTCTATAGAACCTAATAACCGTCATCA
1 TGGTGTCGCCCCATAGAACCTAATAACCGTCATCA
97866029 TGGTGTC
1 TGGTGTC
97866036 ATCCCGAAGG
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (35 bp):
TGGTGTCGCCCCATAGAACCTAATAACCGTCATCA
Found at i:97876146 original size:40 final size:40
Alignment explanation
Indices: 97876091--97876268 Score: 279
Period size: 40 Copynumber: 4.5 Consensus size: 40
97876081 CGAATGATAA
*
97876091 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
97876131 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* **
97876171 CCGGGCTAGGTCCCGAAGGCATTTGTGTTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
97876211 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
97876251 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
97876269 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 17 0.13
40 111 0.87
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:97879073 original size:18 final size:17
Alignment explanation
Indices: 97879046--97879079 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
97879036 ATGGATTTTG
*
97879046 AAATTAAAAAATATATT
1 AAATTAAAAAAAATATT
97879063 AAATGTAAAAAAAATAT
1 AAAT-TAAAAAAAATAT
97879080 GTTTTTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (17 bp):
AAATTAAAAAAAATATT
Found at i:97885374 original size:26 final size:26
Alignment explanation
Indices: 97885338--97885390 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
97885328 CAAAGCAGAA
97885338 ATTTTTGGAAGAAATGAATTTTTCTT
1 ATTTTTGGAAGAAATGAATTTTTCTT
97885364 ATTTTTGGAAGAAATGAATTTTTCTT
1 ATTTTTGGAAGAAATGAATTTTTCTT
97885390 A
1 A
97885391 CTTTCCATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.04, G:0.15, T:0.49
Consensus pattern (26 bp):
ATTTTTGGAAGAAATGAATTTTTCTT
Found at i:97890994 original size:13 final size:13
Alignment explanation
Indices: 97890978--97891003 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97890968 TTATATTAAG
97890978 ATATAATATATAT
1 ATATAATATATAT
97890991 ATATAATATATAT
1 ATATAATATATAT
97891004 CATAAAGCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
ATATAATATATAT
Found at i:97893455 original size:27 final size:27
Alignment explanation
Indices: 97893423--97893879 Score: 174
Period size: 27 Copynumber: 16.9 Consensus size: 27
97893413 TTAGTTTACC
*
97893423 AAATTACCAAAGTACCC-CTGATTTATA
1 AAATTACCAAAATACCCTC-GATTTATA
* *** *
97893450 GAATTACCATTCTACCATCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ***
97893477 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ** *** *
97893504 GAATTATTATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
97893531 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* * *
97893558 AAATTACTAAAATACCCCCTGATTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* **
97893586 AAATTACTAAAATACCCTTAACTTGTA-A
1 AAATTACCAAAATACCCTCGA-TT-TATA
* *
97893614 AAATTGCCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
*****
97893641 AAATTACTGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ** *** * *
97893668 GAATTATTATTTTACCCTTGATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
**** * *
97893695 AAATTACCGTTTTACCCTC-AATTATG
1 AAATTACCAAAATACCCTCGATTTATA
** * ***
97893721 AAATTACTGAAATACCCT-TATAGGGTA
1 AAATTACCAAAATACCCTCGAT-TTATA
* * * *
97893748 GAATTACCAAAACACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
* * *
97893775 AAATTACCAAAATACCACT-GGTTTGTG
1 AAATTACCAAAATACC-CTCGATTTATA
* * *
97893802 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* *
97893829 AAATTACCAAACTACCC-CTGATTTACA
1 AAATTACCAAAATACCCTC-GATTTATA
* *
97893856 AAATTACAAAAATACCCTTGATTT
1 AAATTACCAAAATACCCTCGATTT
97893880 GTAGATTTAC
Statistics
Matches: 336, Mismatches: 79, Indels: 30
0.76 0.18 0.07
Matches are distributed among these distances:
26 25 0.07
27 262 0.78
28 48 0.14
29 1 0.00
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.35
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:97893585 original size:28 final size:28
Alignment explanation
Indices: 97893530--97893602 Score: 130
Period size: 28 Copynumber: 2.6 Consensus size: 28
97893520 CTCGATTTAC
*
97893530 AAAATTACTAAAATA-CCCCTGGTTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
97893557 AAAATTACTAAAATACCCCCTGATTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
97893585 AAAATTACTAAAATACCC
1 AAAATTACTAAAATACCC
97893603 TTAACTTGTA
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
27 15 0.34
28 29 0.66
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (28 bp):
AAAATTACTAAAATACCCCCTGATTTGT
Found at i:97893612 original size:55 final size:55
Alignment explanation
Indices: 97893516--97893648 Score: 151
Period size: 55 Copynumber: 2.4 Consensus size: 55
97893506 ATTATTATTT
* * *** *
97893516 TACCCTCGATTTACAAAATTACTAAAATACCCCTGGTTTGT-AAAATTACTAAAA
1 TACCCCCGATTTATAAAATTACTAAAATACCCCTAACTTGTAAAAATTACCAAAA
* * * *
97893570 TACCCCCTGATTTGTAAAATTACTAAAATACCCTTAACTTGTAAAAATTGCCAAAG
1 TACCCCC-GATTTATAAAATTACTAAAATACCCCTAACTTGTAAAAATTACCAAAA
*
97893626 TACCCTCGATTTATAAAATTACT
1 TACCCCCGATTTATAAAATTACT
97893649 GTTTTACCCT
Statistics
Matches: 65, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
54 6 0.09
55 43 0.66
56 16 0.25
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (55 bp):
TACCCCCGATTTATAAAATTACTAAAATACCCCTAACTTGTAAAAATTACCAAAA
Found at i:97894842 original size:52 final size:51
Alignment explanation
Indices: 97894780--97894915 Score: 215
Period size: 52 Copynumber: 2.7 Consensus size: 51
97894770 GAGGAAGTGC
* *
97894780 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACAG
97894832 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACAG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACAG
97894883 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
97894916 AGGCCTCCAG
Statistics
Matches: 81, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
48 5 0.06
49 9 0.11
50 8 0.10
51 24 0.30
52 35 0.43
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACAG
Found at i:97894877 original size:25 final size:26
Alignment explanation
Indices: 97894780--97894915 Score: 190
Period size: 26 Copynumber: 5.3 Consensus size: 26
97894770 GAGGAAGTGC
*
97894780 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
97894806 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
97894832 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
97894858 AAAAGGGCTT-TGCCCCAGTTTACAG
1 AAAAGGGCTTATGCCCCAGTTTATTG
97894883 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
97894906 AAAAGAGGCT
1 AAAAG-GGCT
97894916 AGGCCTCCAG
Statistics
Matches: 100, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 31 0.31
26 57 0.57
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:97895107 original size:42 final size:42
Alignment explanation
Indices: 97895048--97895139 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
97895038 TAGTCTCCTC
* ** *
97895048 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
97895090 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
97895132 AAATGGGC
1 AAATGGGC
97895140 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:97895198 original size:31 final size:31
Alignment explanation
Indices: 97895163--97895241 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
97895153 CGTTTACAAT
97895163 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
97895194 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
97895225 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
97895242 AACCGTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:97900006 original size:27 final size:27
Alignment explanation
Indices: 97899976--97900069 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 27
97899966 TTCGCCACAA
*
97899976 AGGCATTCCTTTCACATTGCACCGCAT
1 AGGCATTCCTTTCATATTGCACCGCAT
* **
97900003 AGGCGTTCCTTTCATATTG-TGCGACAT
1 AGGCATTCCTTTCATATTGCACCG-CAT
** * * *
97900030 AGGTGTTCCTTTTATATTACACCACAT
1 AGGCATTCCTTTCATATTGCACCGCAT
97900057 AGGCATTCCTTTC
1 AGGCATTCCTTTC
97900070 TTGATGTGTT
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
26 2 0.04
27 49 0.94
28 1 0.02
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.36
Consensus pattern (27 bp):
AGGCATTCCTTTCATATTGCACCGCAT
Found at i:97904855 original size:13 final size:14
Alignment explanation
Indices: 97904837--97904867 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
97904827 TAGTAATAAT
97904837 TAAATAACT-AAAA
1 TAAATAACTGAAAA
97904850 TAAATAACTGAAAA
1 TAAATAACTGAAAA
97904864 TAAA
1 TAAA
97904868 ACACAAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.23
Consensus pattern (14 bp):
TAAATAACTGAAAA
Found at i:97908757 original size:21 final size:21
Alignment explanation
Indices: 97908733--97908775 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
97908723 AAGAAAACCC
97908733 TCAATATAAATAACAATGGTT
1 TCAATATAAATAACAATGGTT
97908754 TCAATATAAATAACAATGGTT
1 TCAATATAAATAACAATGGTT
97908775 T
1 T
97908776 TAATGGAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.35
Consensus pattern (21 bp):
TCAATATAAATAACAATGGTT
Found at i:97909057 original size:12 final size:12
Alignment explanation
Indices: 97909040--97909066 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
97909030 TTTTACAAGA
97909040 TAATCTACTTTT
1 TAATCTACTTTT
97909052 TAATCTACTTTT
1 TAATCTACTTTT
97909064 TAA
1 TAA
97909067 AATTTAAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.56
Consensus pattern (12 bp):
TAATCTACTTTT
Found at i:97917592 original size:6 final size:6
Alignment explanation
Indices: 97917581--97917610 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
97917571 AGAGCCATAC
97917581 TAGTAA TAGTAA TAGTAA TAGTAA TTAGTA
1 TAGTAA TAGTAA TAGTAA TAGTAA -TAGTA
97917611 TATTGTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.78
7 5 0.22
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.37
Consensus pattern (6 bp):
TAGTAA
Found at i:97917988 original size:10 final size:10
Alignment explanation
Indices: 97917947--97917979 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
97917937 AGCCTCTCCC
97917947 CCATCCAAAT
1 CCATCCAAAT
*
97917957 CCATCCGAAT
1 CCATCCAAAT
97917967 CCATCCAAAT
1 CCATCCAAAT
97917977 CCA
1 CCA
97917980 AATCCATCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.36, C:0.42, G:0.03, T:0.18
Consensus pattern (10 bp):
CCATCCAAAT
Found at i:97926779 original size:54 final size:54
Alignment explanation
Indices: 97926689--97926794 Score: 158
Period size: 54 Copynumber: 2.0 Consensus size: 54
97926679 GCAGTTCAAA
* **
97926689 ACTTCTAGATAGATCCTTCTCACAAAGTTCTTTTTTAGGAGAATCAATTGAAAC
1 ACTTCTAGATAAATCCTTCTCACAAAGTTCCGTTTTAGGAGAATCAATTGAAAC
* * *
97926743 ACTTGTAGATAAATCCTTCTCACAGATTTCCGTTTTAGGAGAATCAATTGAA
1 ACTTCTAGATAAATCCTTCTCACAAAGTTCCGTTTTAGGAGAATCAATTGAA
97926795 TCGGGTACAC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (54 bp):
ACTTCTAGATAAATCCTTCTCACAAAGTTCCGTTTTAGGAGAATCAATTGAAAC
Found at i:97930164 original size:34 final size:34
Alignment explanation
Indices: 97930121--97930189 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
97930111 TAATGTTTCC
97930121 TGACAGTTGATTTGGGACATGCATAAACATGAAA
1 TGACAGTTGATTTGGGACATGCATAAACATGAAA
97930155 TGACAGTTGATTTGGGACATGCATAAACATGAAA
1 TGACAGTTGATTTGGGACATGCATAAACATGAAA
97930189 T
1 T
97930190 TAAGATTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.28
Consensus pattern (34 bp):
TGACAGTTGATTTGGGACATGCATAAACATGAAA
Found at i:97942082 original size:20 final size:21
Alignment explanation
Indices: 97942025--97942082 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 21
97942015 AATTATGTAC
*
97942025 TAAAATGGTACATTTTTGTAT
1 TAAAATGGTACATTTTTATAT
*** * *
97942046 TAAAATAAAAAAATTTTAT-T
1 TAAAATGGTACATTTTTATAT
97942066 TAAAATGGTACATTTTT
1 TAAAATGGTACATTTTT
97942083 TAAAGTAAAT
Statistics
Matches: 26, Mismatches: 11, Indels: 1
0.68 0.29 0.03
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (21 bp):
TAAAATGGTACATTTTTATAT
Found at i:97944136 original size:13 final size:13
Alignment explanation
Indices: 97944120--97944144 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97944110 TATATAAATT
97944120 TTAAAAGTAAAAG
1 TTAAAAGTAAAAG
97944133 TTAAAAGTAAAA
1 TTAAAAGTAAAA
97944145 TTGAGAGAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
TTAAAAGTAAAAG
Found at i:97946610 original size:21 final size:23
Alignment explanation
Indices: 97946584--97946630 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
97946574 TAAGGAGTAA
*
97946584 CACACGACCGTGT-G-GCAGAGG
1 CACACGACCATGTGGTGCAGAGG
*
97946605 CACACGCCCATGTGGTGCAGAGG
1 CACACGACCATGTGGTGCAGAGG
97946628 CAC
1 CAC
97946631 GGCCATGTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 11 0.50
22 1 0.05
23 10 0.45
ACGTcount: A:0.23, C:0.32, G:0.34, T:0.11
Consensus pattern (23 bp):
CACACGACCATGTGGTGCAGAGG
Found at i:97946631 original size:21 final size:22
Alignment explanation
Indices: 97946598--97946639 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
97946588 CGACCGTGTG
97946598 GCAGAGGCACACGCCCATGTGGT
1 GCAGAGG-ACACGCCCATGTGGT
*
97946621 GCAGAGG-CACGGCCATGTG
1 GCAGAGGACACGCCCATGTG
97946640 ATCAGGCCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
23 7 0.39
ACGTcount: A:0.21, C:0.29, G:0.38, T:0.12
Consensus pattern (22 bp):
GCAGAGGACACGCCCATGTGGT
Found at i:97950601 original size:126 final size:126
Alignment explanation
Indices: 97950376--97950629 Score: 499
Period size: 126 Copynumber: 2.0 Consensus size: 126
97950366 TGCAGAGTAG
97950376 ACACGCCGTATGAAGGTGTCACACACCCGTATAGCAATCAGACACGGCTGTGTGTCCCACAACAC
1 ACACGCCGTATGAAGGTGTCACACACCCGTATAGCAATCAGACACGGCTGTGTGTCCCACAACAC
*
97950441 ATGCCCGTGTGGAATTCCTAGGCCCTAAATTGGTTACACAGCCGTGTGTCCCGAAATACAT
66 ACGCCCGTGTGGAATTCCTAGGCCCTAAATTGGTTACACAGCCGTGTGTCCCGAAATACAT
97950502 ACACGCCGTATGAAGGTGTCACACACCCGTATAGCAATCAGACACGGCTGTGTGTCCCACAACAC
1 ACACGCCGTATGAAGGTGTCACACACCCGTATAGCAATCAGACACGGCTGTGTGTCCCACAACAC
97950567 ACGCCCGTGTGGAATTCCTAGGCCCTAAATTGGTTACACAGCCGTGTGTCCCGAAATACAT
66 ACGCCCGTGTGGAATTCCTAGGCCCTAAATTGGTTACACAGCCGTGTGTCCCGAAATACAT
97950628 AC
1 AC
97950630 CCGTGTGAGA
Statistics
Matches: 127, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
126 127 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (126 bp):
ACACGCCGTATGAAGGTGTCACACACCCGTATAGCAATCAGACACGGCTGTGTGTCCCACAACAC
ACGCCCGTGTGGAATTCCTAGGCCCTAAATTGGTTACACAGCCGTGTGTCCCGAAATACAT
Found at i:97950616 original size:59 final size:59
Alignment explanation
Indices: 97950425--97950618 Score: 155
Period size: 59 Copynumber: 3.2 Consensus size: 59
97950415 AGACACGGCT
*
97950425 GTGTGTCCCACAACACATGCCCGTGTGGAATTCCTAGGCCCTAAATTGGTTACACAGCC
1 GTGTGTCCCACAACACACGCCCGTGTGGAATTCCTAGGCCCTAAATTGGTTACACAGCC
* * ** **
97950484 GTGTGTCCCGAAATACATACACG-CCGTAT-GAAGGTGTCAC-ACACCCGTATAGCAATCAG--A
1 GTGTGTCCC-ACA-AC--ACACGCCCGTGTGGAA--T-TC-CTAGGCCC---TA--AATTGGTTA
* *
97950544 CACGGCT
53 CACAGCC
97950551 GTGTGTCCCACAACACACGCCCGTGTGGAATTCCTAGGCCCTAAATTGGTTACACAGCC
1 GTGTGTCCCACAACACACGCCCGTGTGGAATTCCTAGGCCCTAAATTGGTTACACAGCC
97950610 GTGTGTCCC
1 GTGTGTCCC
97950619 GAAATACATA
Statistics
Matches: 100, Mismatches: 17, Indels: 36
0.65 0.11 0.24
Matches are distributed among these distances:
57 4 0.04
59 26 0.26
60 2 0.02
61 6 0.06
62 11 0.11
63 11 0.11
64 11 0.11
65 6 0.06
66 2 0.02
67 17 0.17
69 4 0.04
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (59 bp):
GTGTGTCCCACAACACACGCCCGTGTGGAATTCCTAGGCCCTAAATTGGTTACACAGCC
Found at i:97952670 original size:21 final size:20
Alignment explanation
Indices: 97952616--97952655 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
97952606 AGGATTTATT
97952616 GAGTTTTCATGAAAAATACC
1 GAGTTTTCATGAAAAATACC
97952636 GAGTTTTCATGAAAAATACC
1 GAGTTTTCATGAAAAATACC
97952656 TATTTTTCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (20 bp):
GAGTTTTCATGAAAAATACC
Found at i:97955628 original size:56 final size:56
Alignment explanation
Indices: 97955542--97955656 Score: 194
Period size: 56 Copynumber: 2.1 Consensus size: 56
97955532 GGGCTTTTTC
* * *
97955542 CATTTAACATAACTTGTATAGGAGACAAGTGCAAGGCATGAATGACTTAATCATAT
1 CATTTAACATAACTTGTACAGAAGAAAAGTGCAAGGCATGAATGACTTAATCATAT
*
97955598 CATTTAACATAGCTTGTACAGAAGAAAAGTGCAAGGCATGAATGACTTAATCATAT
1 CATTTAACATAACTTGTACAGAAGAAAAGTGCAAGGCATGAATGACTTAATCATAT
97955654 CAT
1 CAT
97955657 GATGTTCTAG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (56 bp):
CATTTAACATAACTTGTACAGAAGAAAAGTGCAAGGCATGAATGACTTAATCATAT
Found at i:97957158 original size:122 final size:122
Alignment explanation
Indices: 97956996--97957218 Score: 410
Period size: 122 Copynumber: 1.8 Consensus size: 122
97956986 GTGGCATAAC
* * *
97956996 CTATATGTTAATGTATATTTTACTATATATATCATGGGTTAAGATTCACTCATTACTTTTCTATC
1 CTATATGCTAATGTATATTTTACCATATATATCATGGGTTAAGATTCACTCATTACTTTTCCATC
97957061 CATTAATATTCAATACAATAATCATCACCATTTAAAATGTGTAAAACCCATGGAAAT
66 CATTAATATTCAATACAATAATCATCACCATTTAAAATGTGTAAAACCCATGGAAAT
*
97957118 CTATATGCTAATGTATATTTTACCATATATATTATGGGTTAAGATTCACTCATTACTTTTCCATC
1 CTATATGCTAATGTATATTTTACCATATATATCATGGGTTAAGATTCACTCATTACTTTTCCATC
97957183 CATTAATATTCAATACAATAATCATCACCATTTAAA
66 CATTAATATTCAATACAATAATCATCACCATTTAAA
97957219 TGTTTAATAT
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
122 97 1.00
ACGTcount: A:0.36, C:0.17, G:0.07, T:0.40
Consensus pattern (122 bp):
CTATATGCTAATGTATATTTTACCATATATATCATGGGTTAAGATTCACTCATTACTTTTCCATC
CATTAATATTCAATACAATAATCATCACCATTTAAAATGTGTAAAACCCATGGAAAT
Found at i:97957282 original size:79 final size:79
Alignment explanation
Indices: 97957146--97957300 Score: 292
Period size: 79 Copynumber: 2.0 Consensus size: 79
97957136 TTTACCATAT
*
97957146 ATATTATGGGTTAAGATTCACTCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCAC
1 ATATCATGGGTTAAGATTCACTCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCAC
97957211 CATTTAAATGTTTA
66 CATTTAAATGTTTA
97957225 ATATCATGGGTTAAGATTCACTCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCAC
1 ATATCATGGGTTAAGATTCACTCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCAC
*
97957290 TATTTAAATGT
66 CATTTAAATGT
97957301 GTAAGACCTA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 74 1.00
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.40
Consensus pattern (79 bp):
ATATCATGGGTTAAGATTCACTCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCAC
CATTTAAATGTTTA
Found at i:97957375 original size:201 final size:201
Alignment explanation
Indices: 97957024--97957410 Score: 668
Period size: 201 Copynumber: 1.9 Consensus size: 201
97957014 TTTACTATAT
*
97957024 ATATCATGGGTTAAGATTCACTCATTACTTTTCTATCCATTAATATTCAATACAATAATCATCAC
1 ATATCATGGGTTAAGATTCACTCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCAC
*
97957089 CATTTAAAATGTGTAAAACCCATGGAAATCTATATGCTAATGTATATTTTACCATATATATTATG
66 CATTTAAAATGTGTAAAACCCATGGAAATCTATATGCTAATGTATATTTTACCATATATATCATG
* *
97957154 GGTTAAGATTCACTCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCACCATTTAAA
131 GGTTAAAATTCACCCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCACCATTTAAA
97957219 TGTTTA
196 TGTTTA
97957225 ATATCATGGGTTAAGATTCACTCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCAC
1 ATATCATGGGTTAAGATTCACTCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCAC
* * *
97957290 TATTT-AAATGTGTAAGACCTATGGAAATCTATATGCTAATGTATATTTTACCATATATATCATG
66 CATTTAAAATGTGTAAAACCCATGGAAATCTATATGCTAATGTATATTTTACCATATATATCATG
* * *
97957354 GTTTAAAATTCAACCCATTACTTTTTCATCCATTAATATTCAATACAATGATCATCA
131 GGTTAAAATTC-ACCCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCA
97957411 TTATTCAAAT
Statistics
Matches: 175, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
200 65 0.37
201 110 0.63
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (201 bp):
ATATCATGGGTTAAGATTCACTCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCAC
CATTTAAAATGTGTAAAACCCATGGAAATCTATATGCTAATGTATATTTTACCATATATATCATG
GGTTAAAATTCACCCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCACCATTTAAA
TGTTTA
Found at i:97960830 original size:24 final size:24
Alignment explanation
Indices: 97960801--97960868 Score: 127
Period size: 24 Copynumber: 2.8 Consensus size: 24
97960791 GCTAATAACA
97960801 GTAAGCTTTATTGAGCTGAAAACG
1 GTAAGCTTTATTGAGCTGAAAACG
97960825 GTAAGCTTTATTGAGCTGAAAACG
1 GTAAGCTTTATTGAGCTGAAAACG
*
97960849 GTAAGCTCTATTGAGCTGAA
1 GTAAGCTTTATTGAGCTGAA
97960869 CAATAAGCTC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.29
Consensus pattern (24 bp):
GTAAGCTTTATTGAGCTGAAAACG
Found at i:97960932 original size:23 final size:23
Alignment explanation
Indices: 97960872--97960934 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
97960862 AGCTGAACAA
* *
97960872 TAAGCTCTTTCAAGCTAAATCAG
1 TAAGCTCTTACGAGCTAAATCAG
** *
97960895 TAAGCTCCAATGAGCTGAAAT-AG
1 TAAGCTCTTACGAGCT-AAATCAG
97960918 TAAGCTCTTACGAGCTA
1 TAAGCTCTTACGAGCTA
97960935 TGGTGAGTCC
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
22 1 0.03
23 26 0.84
24 4 0.13
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (23 bp):
TAAGCTCTTACGAGCTAAATCAG
Found at i:97968223 original size:23 final size:23
Alignment explanation
Indices: 97968159--97968257 Score: 103
Period size: 23 Copynumber: 4.3 Consensus size: 23
97968149 ACTGAAAACG
* *
97968159 GTAAGCTCTATTGAGCTGAAT-A
1 GTAAGCTCCAATGAGCTGAATCA
* **
97968181 GTAATCT-CTTTCGAGCTGAATCA
1 GTAAGCTCCAAT-GAGCTGAATCA
*
97968204 ATAAGCTCCAATGAGCTGAATCA
1 GTAAGCTCCAATGAGCTGAATCA
* *
97968227 GTAGGCTCCAATGAGCTGAAACA
1 GTAAGCTCCAATGAGCTGAATCA
97968250 GTAAGCTC
1 GTAAGCTC
97968258 TTACGAGATA
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
21 2 0.03
22 15 0.24
23 44 0.70
24 2 0.03
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.26
Consensus pattern (23 bp):
GTAAGCTCCAATGAGCTGAATCA
Found at i:97973267 original size:586 final size:586
Alignment explanation
Indices: 97972155--97973329 Score: 2269
Period size: 586 Copynumber: 2.0 Consensus size: 586
97972145 AAAAAGCTAT
*
97972155 CAAAATATACCAAATGAAAATCATCCTAAGCATCTAACCAATATGCCACGATTGGCACCACAATT
1 CAAAATATACCAAATGAAAATCATCATAAGCATCTAACCAATATGCCACGATTGGCACCACAATT
97972220 CAAGCATATTGCTGTTAGCATTCAATACCATTCATACCATAAATCAATACCAAATCAATCACATT
66 CAAGCATATTGCTGTTAGCATTCAATACCATTCATACCATAAATCAATACCAAATCAATCACATT
*
97972285 ATATCTTTTATTCCACGGCTATCATAATACCAACCAAAGTTCACTAAGTTACCTAAAACATATAT
131 ATATCTTTTATTCCACGGCAATCATAATACCAACCAAAGTTCACTAAGTTACCTAAAACATATAT
*
97972350 ACAGATTCAACAATCCAAAATGCATTTAGGTACCGAAACACATCTATGTCATCACACACCACAAC
196 ACAGATTCAACAATCCAAAATGCATTTAGGTACCAAAACACATCTATGTCATCACACACCACAAC
97972415 CAACCAAAATAACCATTAAAGATTTACATCTAATTACATATCTCTTTCTCAAATGGAACAAAACA
261 CAACCAAAATAACCATTAAAGATTTACATCTAATTACATATCTCTTTCTCAAATGGAACAAAACA
97972480 TGACTAAAGTGCTTATAAACATACATAGATAATGCCCTATTTACATGCCACTTATAACCGGGCCA
326 TGACTAAAGTGCTTATAAACATACATAGATAATGCCCTATTTACATGCCACTTATAACCGGGCCA
*
97972545 AAATAAGTGAATAGCTACAAAATGTATTGATGGATAGTGTGATCTCCAATGATGGTCCAATCGAT
391 AAATAAGTGAATAGCTACAAAATGTATTGACGGATAGTGTGATCTCCAATGATGGTCCAATCGAT
97972610 AGTTCAAATCTGACAATCTACAAGGAAATCAAACAAAACGAGGTAAGCTTTCTTAAAGCTTAGTA
456 AGTTCAAATCTGACAATCTACAAGGAAATCAAACAAAACGAGGTAAGCTTTCTTAAAGCTTAGTA
97972675 AGTTTGTAAAAATTAAACATTACATACCTATCATTTAAAGCATTAATCTAATTTAACATATAGCA
521 AGTTTGTAAAAATTAAACATTACATACCTATCATTTAAAGCATTAATCTAATTTAACATATAGCA
97972740 A
586 A
*
97972741 CAAAATATACCAAATGAAAATCATCATAAGCGTCTAACCAATATGCCACGATTGGCACCACAATT
1 CAAAATATACCAAATGAAAATCATCATAAGCATCTAACCAATATGCCACGATTGGCACCACAATT
97972806 CAAGCATATTGCTGTTAGCATTCAATACCATTCATACCATAAATCAATACCAAATCAATCACATT
66 CAAGCATATTGCTGTTAGCATTCAATACCATTCATACCATAAATCAATACCAAATCAATCACATT
97972871 ATATCTTTTATTCCACGGCAATCATAATACCAACCAAAGTTCACTAAGTTACCTAAAACATATAT
131 ATATCTTTTATTCCACGGCAATCATAATACCAACCAAAGTTCACTAAGTTACCTAAAACATATAT
97972936 ACAGATTCAACAATCCAAAATGCATTTAGGTACCAAAACACATCTATGTCATCACACACCACAAC
196 ACAGATTCAACAATCCAAAATGCATTTAGGTACCAAAACACATCTATGTCATCACACACCACAAC
*
97973001 CAACCAAAATAACCATTAAAGATTTACATCTAATTACATATCTCTTTCTCAAATGGAACAAATCA
261 CAACCAAAATAACCATTAAAGATTTACATCTAATTACATATCTCTTTCTCAAATGGAACAAAACA
* *
97973066 TGACTAAAGTGCTTATAAACATACATAGCTAATGCCCTATTTACATGCCACTTATAACTGGGCCA
326 TGACTAAAGTGCTTATAAACATACATAGATAATGCCCTATTTACATGCCACTTATAACCGGGCCA
*
97973131 AAATAAGTGAATAGCTACAAAATGTATTGACGGATAGTGTGATCTCCAATGATGGTCCAATTGAT
391 AAATAAGTGAATAGCTACAAAATGTATTGACGGATAGTGTGATCTCCAATGATGGTCCAATCGAT
97973196 AGTTCAAATCTGACAATCTACAAGGAAATCAAACAAAACGAGGTAAGCTTTCTTAAAGCTTAGTA
456 AGTTCAAATCTGACAATCTACAAGGAAATCAAACAAAACGAGGTAAGCTTTCTTAAAGCTTAGTA
97973261 AGTTTGTAAAAATTAAACATTACATACCTATCATTTAAAGCATTAATCTAATTTAACATATAGCA
521 AGTTTGTAAAAATTAAACATTACATACCTATCATTTAAAGCATTAATCTAATTTAACATATAGCA
97973326 A
586 A
97973327 CAA
1 CAA
97973330 TTCTTTCCAT
Statistics
Matches: 580, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
586 580 1.00
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.27
Consensus pattern (586 bp):
CAAAATATACCAAATGAAAATCATCATAAGCATCTAACCAATATGCCACGATTGGCACCACAATT
CAAGCATATTGCTGTTAGCATTCAATACCATTCATACCATAAATCAATACCAAATCAATCACATT
ATATCTTTTATTCCACGGCAATCATAATACCAACCAAAGTTCACTAAGTTACCTAAAACATATAT
ACAGATTCAACAATCCAAAATGCATTTAGGTACCAAAACACATCTATGTCATCACACACCACAAC
CAACCAAAATAACCATTAAAGATTTACATCTAATTACATATCTCTTTCTCAAATGGAACAAAACA
TGACTAAAGTGCTTATAAACATACATAGATAATGCCCTATTTACATGCCACTTATAACCGGGCCA
AAATAAGTGAATAGCTACAAAATGTATTGACGGATAGTGTGATCTCCAATGATGGTCCAATCGAT
AGTTCAAATCTGACAATCTACAAGGAAATCAAACAAAACGAGGTAAGCTTTCTTAAAGCTTAGTA
AGTTTGTAAAAATTAAACATTACATACCTATCATTTAAAGCATTAATCTAATTTAACATATAGCA
A
Found at i:97977986 original size:96 final size:96
Alignment explanation
Indices: 97977822--97978002 Score: 335
Period size: 96 Copynumber: 1.9 Consensus size: 96
97977812 GAAAACTAAC
* *
97977822 ATAAAATCAAGAAAAATAGAACACATAATACTATGTGCAACCTCACATTTAGACTACACATTTTC
1 ATAAAAGCAAGAAAAATAGAACACATAATACTATGTGCAACCTCACACTTAGACTACACATTTTC
97977887 CCCAATGTGTCCCAAGAAAATAAAAATAAAA
66 CCCAATGTGTCCCAAGAAAATAAAAATAAAA
*
97977918 ATAAAAGCAAGAAAAATAGAACACATAATACTATGTGCACCCTCACACTTAGACTACACATTTTC
1 ATAAAAGCAAGAAAAATAGAACACATAATACTATGTGCAACCTCACACTTAGACTACACATTTTC
97977983 CCCAATGTGTCCCAAGAAAA
66 CCCAATGTGTCCCAAGAAAA
97978003 AAGATTGGAG
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
96 82 1.00
ACGTcount: A:0.46, C:0.22, G:0.09, T:0.22
Consensus pattern (96 bp):
ATAAAAGCAAGAAAAATAGAACACATAATACTATGTGCAACCTCACACTTAGACTACACATTTTC
CCCAATGTGTCCCAAGAAAATAAAAATAAAA
Found at i:97983590 original size:58 final size:59
Alignment explanation
Indices: 97983518--97983630 Score: 194
Period size: 58 Copynumber: 1.9 Consensus size: 59
97983508 TATGACACCC
*
97983518 TGTTAGAGGGGTCTAGATCTCAA-ATTTAGGGGAGAAGAGATTTTTGTTTAAGTTTACCA
1 TGTTAGAGGGGTCTAGATCT-AAGATCTAGGGGAGAAGAGATTTTTGTTTAAGTTTACCA
97983577 TGTT-GAGGGGTCTAGATCTAAGATCTAGGGGAGAAGAGATTTTTGTTTAAGTTT
1 TGTTAGAGGGGTCTAGATCTAAGATCTAGGGGAGAAGAGATTTTTGTTTAAGTTT
97983631 TCTCATAAAA
Statistics
Matches: 52, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
57 2 0.04
58 46 0.88
59 4 0.08
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.36
Consensus pattern (59 bp):
TGTTAGAGGGGTCTAGATCTAAGATCTAGGGGAGAAGAGATTTTTGTTTAAGTTTACCA
Found at i:97990129 original size:39 final size:39
Alignment explanation
Indices: 97990072--97990263 Score: 276
Period size: 39 Copynumber: 4.9 Consensus size: 39
97990062 GGGGTTTCAA
* * *
97990072 TTTAGCTCTGATGAGCTTCAGTTAGCCTTCGGGCTTCCG
1 TTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCCG
* *
97990111 ATTAGCACTTATGTGCTTCAGTTAGCCTTCGGGATTCCG
1 TTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCCG
* *
97990150 TTTAGCACTTATGTGCTTCAGCTAGCCTTCAGGCTTCCG
1 TTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCCG
* *
97990189 TTTAGCACTTATGTGCTTTAGTTAGCCTTCGGGCTTCCC
1 TTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCCG
* * *
97990228 TTTAGCACTTATGTGCTTCAGCTAGACTTTGGGCTT
1 TTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTT
97990264 TAAATCATGA
Statistics
Matches: 136, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 136 1.00
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.38
Consensus pattern (39 bp):
TTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCCG
Found at i:98001228 original size:47 final size:47
Alignment explanation
Indices: 98001072--98001385 Score: 222
Period size: 44 Copynumber: 6.7 Consensus size: 47
98001062 GGATATATTG
* * *
98001072 CCGATGCCATGTCCTAGACATGGTATTACACTGGC-TC-TCATATATGCGT
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCATCATC-TAT-TGAGT
* * * * *
98001121 ACTGATGCATGTCCCAGACATGCCTTACACTAGCA-CAACTCTT-AGT
1 -CCGATGCATGTCCCAGACATGTCTTACACTGGCATCATCTATTGAGT
* *
98001167 -CGATGCGTGTCCCAGACACGTCTTACACTGGCTATC-TCTATTGAGT
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC-ATCATCTATTGAGT
* * *
98001213 CCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCT-CTGTGT
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCA-TCATCTATTGAGT
* * *
98001260 -CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTTA-TGCGT
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ATCATCTATTGAGT
* * * * *
98001308 GCTGATGAATCTCCCAGACATGTCTTACACTAGCATAACTCT-TT--G-
1 -CCGATGCATGTCCCAGACATGTCTTACACTGGCATCA-TCTATTGAGT
* *
98001353 CCGATGCGTGTCCCAGACACGTCTTACACTGGC
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC
98001386 GCACAAATCA
Statistics
Matches: 211, Mismatches: 37, Indels: 38
0.74 0.13 0.13
Matches are distributed among these distances:
44 54 0.26
45 5 0.02
46 13 0.06
47 52 0.25
48 52 0.25
49 26 0.12
50 9 0.04
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (47 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCATCATCTATTGAGT
Found at i:98008687 original size:67 final size:68
Alignment explanation
Indices: 98008579--98008721 Score: 263
Period size: 67 Copynumber: 2.1 Consensus size: 68
98008569 CCGTTTGGAA
98008579 TACTACTGGATATTCTATGAACCTTCAACATGGGATATATTGCCGATGCCATGTCCCATACATGG
1 TACTACTGGATATTCTATGAACCTTCAACATGGGATATATTGCCGATGCCATGTCCCATACATGG
98008644 TC-
66 TCT
*
98008646 TACTACTGGATATTCTATGAACCTTCAACATGGGATATATTGTCGATGCCATGTCCCATACATGG
1 TACTACTGGATATTCTATGAACCTTCAACATGGGATATATTGCCGATGCCATGTCCCATACATGG
98008711 TCT
66 TCT
98008714 TAC-ACTGG
1 TACTACTGG
98008722 CTCTCATATA
Statistics
Matches: 74, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
67 71 0.96
68 3 0.04
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (68 bp):
TACTACTGGATATTCTATGAACCTTCAACATGGGATATATTGCCGATGCCATGTCCCATACATGG
TCT
Found at i:98008710 original size:32 final size:32
Alignment explanation
Indices: 98008606--98008710 Score: 77
Period size: 32 Copynumber: 3.2 Consensus size: 32
98008596 TGAACCTTCA
98008606 ACATGGGATATATTGCCGATGCCATGTCCCAT
1 ACATGGGATATATTGCCGATGCCATGTCCCAT
** * *** * * *
98008638 ACATGGTCTACTACTGGATATTCTATGAACCTTCA-
1 ACATGGGATA-TATTGCCGATGCCATG-TCC--CAT
*
98008673 ACATGGGATATATTGTCGATGCCATGTCCCAT
1 ACATGGGATATATTGCCGATGCCATGTCCCAT
98008705 ACATGG
1 ACATGG
98008711 TCTTACACTG
Statistics
Matches: 50, Mismatches: 18, Indels: 10
0.64 0.23 0.13
Matches are distributed among these distances:
31 2 0.04
32 14 0.28
33 12 0.24
34 12 0.24
35 8 0.16
36 2 0.04
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (32 bp):
ACATGGGATATATTGCCGATGCCATGTCCCAT
Found at i:98008794 original size:44 final size:45
Alignment explanation
Indices: 98008689--98009000 Score: 210
Period size: 44 Copynumber: 6.7 Consensus size: 45
98008679 GATATATTGT
*
98008689 CGATGCCATGTCCCATACATGGTCTTACACTGG--C-TCTCATATATGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCACATCTC-T-TATGC
* *
98008735 GTGCTGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTA-GC
1 ---C-GATGCATGTCCCAGACATGTCTTACACTGGCACATCTCTTATGC
* * * * *
98008783 CGATGCGTGTCCCAAACACGTCTTACACTGGCTATC-TCTATTGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-A-CATCTCTT-ATGC
* *
98008830 CGATGCATGTCCTAGACATGTCTTACTCTGGCATTCATCTC-TATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCA--CATCTCTTATGC
*
98008876 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCAT-TTATGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCACATC-TCTTATGC
* * * * *
98008922 ATGCTGATACATGTCCCAGACATGTCTTACAGTAGCACAACTCTTA-GT
1 ---C-GATGCATGTCCCAGACATGTCTTACACTGGCACATCTCTTATGC
* * *
98008970 CGATGCGTGTCCCAGGCACGTCTTACACTGG
1 CGATGCATGTCCCAGACATGTCTTACACTGG
98009001 TGCACAAATC
Statistics
Matches: 212, Mismatches: 31, Indels: 45
0.74 0.11 0.16
Matches are distributed among these distances:
44 51 0.24
45 9 0.04
46 18 0.08
47 45 0.21
48 42 0.20
49 35 0.17
50 9 0.04
51 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCACATCTCTTATGC
Found at i:98008949 original size:48 final size:48
Alignment explanation
Indices: 98008689--98008952 Score: 233
Period size: 47 Copynumber: 5.6 Consensus size: 48
98008679 GATATATTGT
* * *
98008689 CGATGCCATGTCCCATACATGGTCTTACACTGGCTCTCATATATGCGTGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTATGCATGC
* * * *
98008739 TGATGCATGTCCCAGACATGTCTTACACTAGCAC-AACTCT-T--A-GC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCA-TCTATGCATGC
* * * * *
98008783 CGATGCGTGTCCCAAACACGTCTTACACTGGCTATC-TCTATTG-AGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTA-TGCATGC
* * *
98008830 CGATGCATGTCCTAGACATGTCTTACTCTGGCAT-TCATCTCT--ATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TCTCATCTATGCATGC
*
98008876 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTTATGCATGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTATGCATGC
* *
98008926 TGATACATGTCCCAGACATGTCTTACA
1 CGATGCATGTCCCAGACATGTCTTACA
98008953 GTAGCACAAC
Statistics
Matches: 173, Mismatches: 28, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
43 3 0.02
44 29 0.17
45 1 0.01
46 9 0.05
47 48 0.28
48 45 0.26
49 27 0.16
50 11 0.06
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (48 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTATGCATGC
Found at i:98014675 original size:29 final size:30
Alignment explanation
Indices: 98014627--98014683 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
98014617 GAATTGAATC
*
98014627 AAATCAAAATTTCATATATAAAATTACATA
1 AAATCAAAAGTTCATATATAAAATTACATA
* *
98014657 AAAT-AAAAGTTCATGTATAAATTTACA
1 AAATCAAAAGTTCATATATAAAATTACA
98014684 CATTAAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (30 bp):
AAATCAAAAGTTCATATATAAAATTACATA
Found at i:98014707 original size:31 final size:30
Alignment explanation
Indices: 98014627--98014713 Score: 88
Period size: 31 Copynumber: 2.9 Consensus size: 30
98014617 GAATTGAATC
* *
98014627 AAATCAAAATTTCATATATAAAATT-ACATA
1 AAAT-AAAAGTTCATATATAAATTTAACATA
*
98014657 AAATAAAAGTTCATGTATAAATTTACACATTA
1 AAATAAAAGTTCATATATAAATTTA-ACA-TA
* *
98014689 AAAT-AAAGTTTATATATAATTTTAA
1 AAATAAAAGTTCATATATAAATTTAA
98014714 AATTTATCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
29 17 0.35
30 5 0.10
31 20 0.42
32 6 0.12
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.37
Consensus pattern (30 bp):
AAATAAAAGTTCATATATAAATTTAACATA
Found at i:98015037 original size:13 final size:15
Alignment explanation
Indices: 98015013--98015044 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
98015003 ACGAAATAGT
98015013 TATTTAAAAATG-TA
1 TATTTAAAAATGATA
98015027 TATTT-AAAATGATA
1 TATTTAAAAATGATA
98015041 TATT
1 TATT
98015045 AAATTAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (15 bp):
TATTTAAAAATGATA
Found at i:98017060 original size:11 final size:11
Alignment explanation
Indices: 98017041--98017075 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
98017031 CCCCTTCCCC
98017041 CTCCCTTCTCT
1 CTCCCTTCTCT
98017052 CTCCCTTCTCT
1 CTCCCTTCTCT
98017063 CTTCCC-TCTCT
1 C-TCCCTTCTCT
98017074 CT
1 CT
98017076 TCTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:98018034 original size:24 final size:24
Alignment explanation
Indices: 98017997--98018104 Score: 73
Period size: 24 Copynumber: 4.4 Consensus size: 24
98017987 GTATATATTG
*
98017997 TATATGTTTTATA-TATGTTATGTA
1 TATAT-TTTTATACCATGTTATGTA
**
98018021 TATATTTTTAATATTACTAGTTA--TA
1 TATATTTTT-ATACCA-T-GTTATGTA
98018046 TATATTTCTTATA-CAT-TTCCATGTA
1 TATATTT-TTATACCATGTT--ATGTA
* *
98018071 CATATTTTTATACCATCTTATGTA
1 TATATTTTTATACCATGTTATGTA
98018095 TATATTTTTA
1 TATATTTTTA
98018105 AATACTATAT
Statistics
Matches: 70, Mismatches: 3, Indels: 22
0.74 0.03 0.23
Matches are distributed among these distances:
21 2 0.03
23 6 0.09
24 28 0.40
25 25 0.36
26 5 0.07
27 4 0.06
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.56
Consensus pattern (24 bp):
TATATTTTTATACCATGTTATGTA
Found at i:98018167 original size:36 final size:34
Alignment explanation
Indices: 98018088--98018170 Score: 96
Period size: 34 Copynumber: 2.4 Consensus size: 34
98018078 TTATACCATC
*
98018088 TTATGTATATATTTTTAAATACTATATTGTATAT
1 TTATGTATATATTCTTAAATACTATATTGTATAT
* * *
98018122 GTATATATATATTCTT-AGTACTATATTACGTATAT
1 TTATGTATATATTCTTAAATACTATATT--GTATAT
98018157 ATTATGTATATATT
1 -TTATGTATATATT
98018171 TATTTTTACC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
33 10 0.25
34 13 0.32
35 6 0.15
36 11 0.28
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (34 bp):
TTATGTATATATTCTTAAATACTATATTGTATAT
Found at i:98019270 original size:137 final size:137
Alignment explanation
Indices: 98019024--98019307 Score: 514
Period size: 137 Copynumber: 2.1 Consensus size: 137
98019014 TATTGGGCCT
*
98019024 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* ** *
98019089 AGCCCCTTATTCAGATAACAGTATGTTCCATAGGCCCATTTCAAAATACATGCAACATTAGTAAA
66 AGCCCATTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
98019154 CATATGC
131 CATATGC
*
98019161 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
98019226 AGCCCATTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCATTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
98019291 CATATGC
131 CATATGC
98019298 AAGCCCATTT
1 AAGCCCATTT
98019308 TGGGAGACTA
Statistics
Matches: 141, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 141 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (137 bp):
AAGCCCATTTAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCATTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:98021138 original size:26 final size:26
Alignment explanation
Indices: 98021100--98021235 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
98021090 CATGAAATTC
*
98021100 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
98021126 TTATCATGTAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
98021152 TTATCATGTAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
98021178 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
* *
98021204 TTTTCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
98021230 TTATCA
1 TTATCA
98021236 ATTTGTATCA
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 105 1.00
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:98025197 original size:137 final size:137
Alignment explanation
Indices: 98024951--98025237 Score: 520
Period size: 137 Copynumber: 2.1 Consensus size: 137
98024941 TATTGGGCCT
**
98024951 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
98025016 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
98025081 CATATGC
131 CATATGC
* **
98025088 AAGCCCATTTGGGTAATAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGTTTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
98025153 AGCCCCTTATTCAGATAACAGTATGGCTCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
98025218 CATATGC
131 CATATGC
98025225 AAGCCCATTTGGG
1 AAGCCCATTTGGG
98025238 GAGACTACTC
Statistics
Matches: 144, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 144 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:98025514 original size:26 final size:26
Alignment explanation
Indices: 98025485--98025537 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
98025475 TCAAACATGC
98025485 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
98025511 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
98025537 A
1 A
98025538 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:98027061 original size:26 final size:26
Alignment explanation
Indices: 98027023--98027106 Score: 123
Period size: 26 Copynumber: 3.2 Consensus size: 26
98027013 CATGAAATTC
* *
98027023 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
98027049 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
* * *
98027075 TTTTTATGGAATATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
98027101 TTATCA
1 TTATCA
98027107 ATTTGTATCA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:98039635 original size:73 final size:74
Alignment explanation
Indices: 98039511--98039673 Score: 224
Period size: 73 Copynumber: 2.2 Consensus size: 74
98039501 CGATTTCTAT
* * *
98039511 TTTTCAATTTATGTTTCCAAAAATCAATTCATAGCGCTAAAGGTGAATTGAGCCTCGGGTCACAT
1 TTTTCAATTTATGTTTCCAAAAATCAACTCATAGCGCGAAAGGTGAATTGAGCCTCGGCTCACAT
98039576 AGC-GAGGTA
66 -GCTGAGGTA
* *
98039585 TTTTCAATTTATGTTT-CAAAAATCAACTCATA-CTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
1 TTTTCAATTTATGTTTCCAAAAATCAACTCATAGC-GCGAAAGGTGAATTGAGCCTCGGCTCACA
*
98039648 TGCTGAGGTC
65 TGCTGAGGTA
*
98039658 TTTTCAATTTCTGTTT
1 TTTTCAATTTATGTTT
98039674 TTATGTTTGT
Statistics
Matches: 80, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
72 3 0.04
73 61 0.76
74 16 0.20
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (74 bp):
TTTTCAATTTATGTTTCCAAAAATCAACTCATAGCGCGAAAGGTGAATTGAGCCTCGGCTCACAT
GCTGAGGTA
Found at i:98039813 original size:72 final size:73
Alignment explanation
Indices: 98039692--98039875 Score: 244
Period size: 73 Copynumber: 2.5 Consensus size: 73
98039682 GTTTTTTTTT
**
98039692 AAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTTGACCTCC
1 AAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAACCTCC
* *
98039757 GT-TTTCGA
65 GTCTGTCAA
* * * ** *
98039765 AAATCAACTCATATTGCGAAAGGTGAATTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAACCTCCG
98039830 TCTGTCAA
66 TCTGTCAA
**
98039838 AAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
98039876 CTCACATGCT
Statistics
Matches: 96, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
72 46 0.48
73 50 0.52
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (73 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAACCTCCG
TCTGTCAA
Found at i:98039863 original size:234 final size:234
Alignment explanation
Indices: 98039530--98039984 Score: 598
Period size: 234 Copynumber: 1.9 Consensus size: 234
98039520 TATGTTTCCA
* * * *
98039530 AAAATCAATTCATAGCGCTAAAGGTGAATTGAGCCTCGGGTCACATAGCGAGGTATTTTCAATTT
1 AAAATCAACTCATAGCGCGAAAGGTGAATTGAGCCTCAGG-CACATAGCGAGGTAATTTCAATTT
* *
98039595 ATGTTTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTT
65 ATGTTTCAAAAATCAACTCATACTACGAGAGGTGAGTTGAGCCTCAGCTCACATGCTGAGGTCTT
* * **** *
98039660 TTCAATTTCTGTTTTT-ATGTT-TGTTTTT-TTTTAAATCAACTCATAATTGCGAGAGGTGAGTT
130 TTCAATTTCTATTTTTAAT-TTCTATTTTTAAAAAAAATCAACTCAT-ACTGCGAGAGGTGAGTT
98039722 GAGCCTCAGGACACACTGAGGTAATTTTGACCTCCGTTTTCG
193 GAGCCTCAGGACACACTGAGGTAATTTTGACCTCCGTTTTCG
** *
98039764 AAAATCAACTCATATTGCGAAAGGTGAATTGAGCCTCAGG-ACA-CGCTGAGGTAATTTCAATTT
1 AAAATCAACTCATAGCGCGAAAGGTGAATTGAGCCTCAGGCACATAGC-GAGGTAATTTCAATTT
*
98039827 CTGTCTGTCAAAAATCAACTCATA-TCACGAGAGGTGAGTTGAGCCTCAGCTCACATGCTGAGGT
65 ATGT-T-TCAAAAATCAACTCATACT-ACGAGAGGTGAGTTGAGCCTCAGCTCACATGCTGAGGT
*
98039891 CTTTTCAATTTTTATTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATACTGCGAGAGGTGAG
127 CTTTTCAATTTCTATTTTTAATTTCTATTTTT-AAAAAAAATCAACTCATACTGCGAGAGGTGAG
* ***
98039956 TTGATCCTCAGGACATGTTGAGGTAATTT
191 TTGAGCCTCAGGACACACTGAGGTAATTT
98039985 CAATCTCTGT
Statistics
Matches: 191, Mismatches: 22, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
231 2 0.01
232 21 0.11
233 2 0.01
234 107 0.56
235 8 0.04
236 39 0.20
237 12 0.06
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (234 bp):
AAAATCAACTCATAGCGCGAAAGGTGAATTGAGCCTCAGGCACATAGCGAGGTAATTTCAATTTA
TGTTTCAAAAATCAACTCATACTACGAGAGGTGAGTTGAGCCTCAGCTCACATGCTGAGGTCTTT
TCAATTTCTATTTTTAATTTCTATTTTTAAAAAAAATCAACTCATACTGCGAGAGGTGAGTTGAG
CCTCAGGACACACTGAGGTAATTTTGACCTCCGTTTTCG
Found at i:98040036 original size:89 final size:86
Alignment explanation
Indices: 98039818--98040173 Score: 295
Period size: 89 Copynumber: 4.0 Consensus size: 86
98039808 GCTGAGGTAA
* * * ** *
98039818 TTTCAATTTCTGTCTGTCAAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTCAGCTCACAT
1 TTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACAT
* * *
98039883 GCTGAGGTCTTTTCAATTTTTATT
64 GCTGAGGT-ATTTCAATTTCTGTT
* * * *
98039907 TTT-AATTTCTATTTTTCAAAAAAAATCAACTCATACTGCGAGAGGTGAGTTGATCCTCAGGACA
1 TTTCAATTTATGTTTTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
98039971 TGTTGAGGTAATTTCAATCTCTGTT
63 TGCTGAGGT-ATTTCAATTTCTGTT
* * * *
98039996 TTCTCCAATTTATGTTTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCAC
1 TT-T-CAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAT
**
98040061 GCTGAGGTATTCTTGATTTCTGTT
64 GCTGAGGTATT-TCAATTTCTGTT
* * ** * * * *
98040085 TTTCAATTTATG-TTTCCAAAAATCAATTCATAGCGCTAAAGGTGAATTGAGCCTCGGGTCACAT
1 TTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACAT
*
98040149 AGC-GAGGTATTTTCAATTTATGTT
64 -GCTGAGGTA-TTTCAATTTCTGTT
98040173 T
1 T
98040174 CAAAAATCAA
Statistics
Matches: 215, Mismatches: 41, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
86 36 0.17
87 9 0.04
88 33 0.15
89 88 0.41
90 1 0.00
91 36 0.17
92 12 0.06
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.37
Consensus pattern (86 bp):
TTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGC
TGAGGTATTTCAATTTCTGTT
Found at i:98040208 original size:73 final size:73
Alignment explanation
Indices: 98040084--98040396 Score: 355
Period size: 73 Copynumber: 4.2 Consensus size: 73
98040074 TGATTTCTGT
* ** * *
98040084 TTTTCAATTTATGTTTCCAAAAATCAATTCATAGCGCTAAAGGTGAATTGAGCCTCGGGTCACAT
1 TTTTCAATTTATGTTT-CAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGGTCACA-
*
98040149 AGC-GAGGTA
64 CGCTGAGGTA
*
98040158 TTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACG
1 TTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGGTCACACG
*
98040223 CTGAGGTG
66 CTGAGGTA
*
98040231 TTTTCAATTTATGTTTTTCAAAAAATCAACTCATATTGCGAGAGGT-AAGTTGAGCCTCGGG--G
1 TTTTCAATTTATG--TTTC-AAAAATCAACTCATATTGCGAGAGGTGAA-TTGAGCCTCGGGTCA
98040293 CACGCTGAGGTA
62 CACGCTGAGGTA
* * * * * *
98040305 TTTTCAATCATTATTTTTCAAGAATTAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGATCAC
1 TTTTCAAT--TTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTC-GGGTCAC
*
98040370 ACGCCGAGGTA
63 ACGCTGAGGTA
* *
98040381 TTTTTAATTAATGTTT
1 TTTTCAATTTATGTTT
98040397 TTTTTCAATT
Statistics
Matches: 206, Mismatches: 22, Indels: 22
0.82 0.09 0.09
Matches are distributed among these distances:
72 2 0.01
73 90 0.44
74 49 0.24
75 5 0.02
76 60 0.29
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (73 bp):
TTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGGTCACACG
CTGAGGTA
Found at i:98040357 original size:149 final size:148
Alignment explanation
Indices: 98040084--98040398 Score: 379
Period size: 149 Copynumber: 2.1 Consensus size: 148
98040074 TGATTTCTGT
* * * *
98040084 TTTTCAATTTATG--TTTCCAAAAATCAATTCATAGCGCTAAAGGTGAATTGAGCCTCGGGTCAC
1 TTTTCAATTTATGTTTTTCAAAAAATCAACTCATAGCGCGAAAGGTGAATTGAGCCTCGGGGCAC
*
98040147 ATAGCGAGGTATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
66 --AGCGAGGTATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCT
* * *
98040212 C-GGGTCACACGCTGAGGTG
129 CAGGATCACACGCCGAGGTA
** *
98040231 TTTTCAATTTATGTTTTTCAAAAAATCAACTCATATTGCGAGAGGT-AAGTTGAGCCTCGGGGCA
1 TTTTCAATTTATGTTTTTCAAAAAATCAACTCATAGCGCGAAAGGTGAA-TTGAGCCTCGGGGCA
* * * * *
98040295 C-GCTGAGGTATTTTCAATCATTATTTTTCAAGAATTAATTCATATTGCTAGAGGTGAATTGAGC
65 CAGC-GAGGTATTTTCAAT--TTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAATTGAGC
98040359 CTCAGGATCACACGCCGAGGTA
127 CTCAGGATCACACGCCGAGGTA
* *
98040381 TTTTTAATTAATGTTTTT
1 TTTTCAATTTATGTTTTT
98040399 TTTCAATTTA
Statistics
Matches: 143, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
146 2 0.01
147 27 0.19
148 2 0.01
149 81 0.57
150 31 0.22
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.35
Consensus pattern (148 bp):
TTTTCAATTTATGTTTTTCAAAAAATCAACTCATAGCGCGAAAGGTGAATTGAGCCTCGGGGCAC
AGCGAGGTATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCA
GGATCACACGCCGAGGTA
Found at i:98041060 original size:25 final size:25
Alignment explanation
Indices: 98041026--98041073 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
98041016 AAAAGTCTTT
*
98041026 ACTCTATTCTCGTTACACGACAACA
1 ACTCTATTCTCGTTACACAACAACA
*
98041051 ACTCTGTTCTCGTTACACAACAA
1 ACTCTATTCTCGTTACACAACAA
98041074 TGAGTAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.31, G:0.08, T:0.29
Consensus pattern (25 bp):
ACTCTATTCTCGTTACACAACAACA
Found at i:98041830 original size:11 final size:11
Alignment explanation
Indices: 98041814--98041848 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
98041804 CCCTTCCCCC
98041814 CTCCCTTCTCT
1 CTCCCTTCTCT
98041825 CTCCCTTCTCT
1 CTCCCTTCTCT
98041836 CTTCCC-TCTCT
1 C-TCCCTTCTCT
98041847 CT
1 CT
98041849 TCTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:98042815 original size:22 final size:22
Alignment explanation
Indices: 98042757--98042818 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 22
98042747 CTAATGTATG
*
98042757 TATATATTGTATATGTTTTATA
1 TATATATTGTATATGTTTTAAA
* *
98042779 TATGT-TATGTATATATTTTTAAA
1 TATATAT-TGTATAT-GTTTTAAA
98042802 TACTATATTGTATATGT
1 TA-TATATTGTATATGT
98042819 ATATATATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
21 1 0.03
22 11 0.35
23 9 0.29
24 9 0.29
25 1 0.03
ACGTcount: A:0.32, C:0.02, G:0.10, T:0.56
Consensus pattern (22 bp):
TATATATTGTATATGTTTTAAA
Found at i:98042858 original size:34 final size:34
Alignment explanation
Indices: 98042788--98042865 Score: 95
Period size: 36 Copynumber: 2.2 Consensus size: 34
98042778 ATATGTTATG
* *
98042788 TATATATTTTTAAATACTATATTGTATATGTATA
1 TATATATTCTTAAATACTATATTGTATATATATA
*
98042822 TATATATTCTT-AGTACTATATTACGTATATATTATA
1 TATATATTCTTAAATACTATATT--GTATATA-TATA
98042858 TATATATT
1 TATATATT
98042866 TATTTTTACC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 10 0.26
34 10 0.26
35 6 0.16
36 12 0.32
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (34 bp):
TATATATTCTTAAATACTATATTGTATATATATA
Found at i:98042858 original size:36 final size:34
Alignment explanation
Indices: 98042777--98042865 Score: 99
Period size: 34 Copynumber: 2.5 Consensus size: 34
98042767 ATATGTTTTA
* *
98042777 TATATGTTATGTATATATTTTTAAATACTATATTG
1 TATAT-TTATATATATATTCTTAAATACTATATTG
* *
98042812 TATATGTATATATATATTCTT-AGTACTATATTACG
1 TATATTTATATATATATTCTTAAATACTATATT--G
98042847 TATATATTATATATATATT
1 TATAT-TTATATATATATT
98042866 TATTTTTACC
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
33 10 0.22
34 13 0.28
35 11 0.24
36 12 0.26
ACGTcount: A:0.36, C:0.04, G:0.07, T:0.53
Consensus pattern (34 bp):
TATATTTATATATATATTCTTAAATACTATATTG
Found at i:98046848 original size:47 final size:46
Alignment explanation
Indices: 98046726--98046856 Score: 183
Period size: 46 Copynumber: 2.8 Consensus size: 46
98046716 ATAATTTCAC
* *
98046726 CCATAATGAACTCGGAACGCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGTTCGCAT
* **
98046772 CCATAATAAACTCGGAATACAACTCAACGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATG-TTCGCAT
*
98046818 CCATAAGTGAACTTGGAACGCAACTCAACGAGTTCGGAT
1 CCATAA-TGAACTCGGAACGCAACTCAACGAGTTCGGAT
98046857 CTCAATTTCC
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
46 44 0.59
47 30 0.41
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:98049590 original size:12 final size:14
Alignment explanation
Indices: 98049575--98049646 Score: 51
Period size: 15 Copynumber: 5.0 Consensus size: 14
98049565 TATTTTTACC
98049575 ATTTTTATT-TTA-
1 ATTTTTATTATTAT
98049587 A-TTTTATTATTAT
1 ATTTTTATTATTAT
*
98049600 ATTTATTATTATTGTT
1 ATTT-TTATTATT-AT
*
98049616 ATTATTATTAGTAGTAT
1 ATTTTTATTA-T--TAT
*
98049633 ATTTTTACTATTAT
1 ATTTTTATTATTAT
98049647 TAGAATTATT
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
11 7 0.15
12 4 0.09
13 1 0.02
14 5 0.11
15 14 0.30
16 6 0.13
17 9 0.19
18 1 0.02
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.65
Consensus pattern (14 bp):
ATTTTTATTATTAT
Done.