Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 289 of 373
Found at i:98049598 original size:3 final size:3
Alignment explanation
Indices: 98049590--98049648 Score: 50
Period size: 3 Copynumber: 20.0 Consensus size: 3
98049580 TATTTTAATT
* * *
98049590 TTA TTA TTA -TA TTTA TTA TTA TTG TTA TTA TTA TTA GTA GTA -TA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
98049634 TTT TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA
98049649 GAATTATTTG
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
2 4 0.09
3 40 0.87
4 2 0.04
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:98049771 original size:24 final size:24
Alignment explanation
Indices: 98049744--98049801 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
98049734 ATATGTTATG
*
98049744 TATACATATTTAAATACTATATTA
1 TATACATATTTAAATACTACATTA
* * *
98049768 TATACATATTTTAATGCTACGTTA
1 TATACATATTTAAATACTACATTA
98049792 TATACATATT
1 TATACATATT
98049802 ATTATTATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (24 bp):
TATACATATTTAAATACTACATTA
Found at i:98049863 original size:24 final size:25
Alignment explanation
Indices: 98049836--98049918 Score: 61
Period size: 24 Copynumber: 3.4 Consensus size: 25
98049826 ATCATATTTG
98049836 TTATTAGTAT-TAGTATATATTTTA
1 TTATTAGTATATAGTATATATTTTA
* * *
98049860 TTA-TATGTGTGTA-TATATACTTTA
1 TTATTA-GTATATAGTATATATTTTA
98049884 TT-TTA-TATATAGTAT-TATTTTTA
1 TTATTAGTATATAGTATATA-TTTTA
*
98049907 TATATTATTATA
1 T-TATTAGTATA
98049919 CTTATTATTT
Statistics
Matches: 46, Mismatches: 5, Indels: 14
0.71 0.08 0.22
Matches are distributed among these distances:
22 6 0.13
23 10 0.22
24 21 0.46
25 5 0.11
26 4 0.09
ACGTcount: A:0.33, C:0.01, G:0.07, T:0.59
Consensus pattern (25 bp):
TTATTAGTATATAGTATATATTTTA
Found at i:98049892 original size:16 final size:17
Alignment explanation
Indices: 98049871--98049917 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 17
98049861 TATATGTGTG
98049871 TATATATACT-TTATTT
1 TATATATACTATTATTT
*
98049887 TATATATAGTATTATTT
1 TATATATACTATTATTT
*
98049904 T-TATATATTATTAT
1 TATATATACTATTAT
98049918 ACTTATTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 21 0.75
17 7 0.25
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (17 bp):
TATATATACTATTATTT
Found at i:98050151 original size:21 final size:21
Alignment explanation
Indices: 98050125--98050168 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
98050115 TGCATATATA
**
98050125 TATATTTATTATTATTATTAT
1 TATATTTATTATTAACATTAT
98050146 TATATTTATTATTAACATTAT
1 TATATTTATTATTAACATTAT
98050167 TA
1 TA
98050169 ATACTAGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
TATATTTATTATTAACATTAT
Found at i:98050433 original size:23 final size:25
Alignment explanation
Indices: 98050406--98050452 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 25
98050396 TATGTTTTAT
98050406 TATATGTATATATTT-T-TAATATA
1 TATATGTATATATTTATGTAATATA
98050429 TATATGTATATATTTATGTAATAT
1 TATATGTATATATTTATGTAATAT
98050453 TATTAATAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 15 0.68
24 1 0.05
25 6 0.27
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.55
Consensus pattern (25 bp):
TATATGTATATATTTATGTAATATA
Found at i:98050951 original size:21 final size:20
Alignment explanation
Indices: 98050818--98050962 Score: 66
Period size: 21 Copynumber: 7.0 Consensus size: 20
98050808 TACCGTATGT
*
98050818 TATTATTATATTTATTTTTA
1 TATTATTATATTTATTATTA
***
98050838 CCCCTATTATATTTATTATTAA
1 -TATTATTATATTTATTATT-A
*
98050860 TATTAGTATATATT-TTATTA
1 TATTATTATAT-TTATTATTA
* *
98050880 TACGTGTA-TATATATACTTTTTA
1 TA--T-TATTATATTTA-TTATTA
* *
98050903 TATAGAGTATTATTT-TTA-TA
1 TAT-TATTA-TATTTATTATTA
*
98050923 TATCATTATATTTATTATTA
1 TATTATTATATTTATTATTA
98050943 TACTTATTAT-TTTCATTATT
1 TA-TTATTATATTT-ATTATT
98050963 GTTGCATATT
Statistics
Matches: 94, Mismatches: 17, Indels: 26
0.69 0.12 0.19
Matches are distributed among these distances:
18 5 0.05
19 6 0.06
20 15 0.16
21 44 0.47
22 11 0.12
23 13 0.14
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (20 bp):
TATTATTATATTTATTATTA
Found at i:98054844 original size:22 final size:22
Alignment explanation
Indices: 98054819--98054873 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
98054809 ATTCATGACT
*
98054819 AACATTCATTCGTCATTTATTC
1 AACATTCATTCGTCATTCATTC
**
98054841 AACATTCATTTTTCATTCATTC
1 AACATTCATTCGTCATTCATTC
*
98054863 ATTCATTCATT
1 A-ACATTCATT
98054874 GCATGTACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 20 0.71
23 8 0.29
ACGTcount: A:0.27, C:0.22, G:0.02, T:0.49
Consensus pattern (22 bp):
AACATTCATTCGTCATTCATTC
Found at i:98054849 original size:15 final size:16
Alignment explanation
Indices: 98054831--98054872 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
98054821 CATTCATTCG
98054831 TCATTTATTCA-ACAT
1 TCATTTATTCATACAT
*
98054846 TCATTT-TTCATTCAT
1 TCATTTATTCATACAT
*
98054861 TCATTCATTCAT
1 TCATTTATTCAT
98054873 TGCATGTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 4 0.17
15 14 0.61
16 5 0.22
ACGTcount: A:0.26, C:0.21, G:0.00, T:0.52
Consensus pattern (16 bp):
TCATTTATTCATACAT
Found at i:98071221 original size:17 final size:17
Alignment explanation
Indices: 98071201--98071233 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
98071191 ATTAAGAATG
98071201 TTATTAAATTAAATTTT
1 TTATTAAATTAAATTTT
*
98071218 TTATTAAATTATATTT
1 TTATTAAATTAAATTT
98071234 AATAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATTAAATTAAATTTT
Found at i:98071494 original size:16 final size:16
Alignment explanation
Indices: 98071473--98071511 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
98071463 TGAATTACTG
*
98071473 ATTACAGCTCTATTCA
1 ATTACAGCCCTATTCA
*
98071489 ATTACAGCCCTATTCC
1 ATTACAGCCCTATTCA
98071505 ATTACAG
1 ATTACAG
98071512 TGAACCAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (16 bp):
ATTACAGCCCTATTCA
Found at i:98085236 original size:24 final size:24
Alignment explanation
Indices: 98085204--98085254 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
98085194 GACACATGTA
98085204 TCGTTTTGGGTCGCCTGATGAACC
1 TCGTTTTGGGTCGCCTGATGAACC
98085228 TCGTTTTGGGTCGCCTGATGAACC
1 TCGTTTTGGGTCGCCTGATGAACC
98085252 TCG
1 TCG
98085255 CAACCCGCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.12, C:0.25, G:0.29, T:0.33
Consensus pattern (24 bp):
TCGTTTTGGGTCGCCTGATGAACC
Found at i:98085700 original size:29 final size:28
Alignment explanation
Indices: 98085643--98085697 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
98085633 TTCCTTAAAA
*
98085643 AAAAGAAAACGAAGAAAATATAATTTTC
1 AAAAGAAAAAGAAGAAAATATAATTTTC
* *
98085671 AAAAGAAAAATAATAAAATATAATTTT
1 AAAAGAAAAAGAAGAAAATATAATTTT
98085698 TCAGTTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.64, C:0.04, G:0.07, T:0.25
Consensus pattern (28 bp):
AAAAGAAAAAGAAGAAAATATAATTTTC
Found at i:98087067 original size:20 final size:20
Alignment explanation
Indices: 98087044--98087084 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
98087034 GCCAAAGCAT
98087044 ATAGCACTACAGCAAAATAG
1 ATAGCACTACAGCAAAATAG
98087064 ATAGCACTACAGCAAAATAG
1 ATAGCACTACAGCAAAATAG
98087084 A
1 A
98087085 CTTTTAGCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.51, C:0.20, G:0.15, T:0.15
Consensus pattern (20 bp):
ATAGCACTACAGCAAAATAG
Found at i:98088068 original size:28 final size:29
Alignment explanation
Indices: 98088037--98088096 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
98088027 TAGGAATTAT
* *
98088037 GTTTATGGCTTATGGTTTAAG-GGTT-GGG
1 GTTTAAGGCTTATGGGTT-AGTGGTTAGGG
*
98088065 GTTTAAGGGTTATGGGTTAGTGGTTAGGG
1 GTTTAAGGCTTATGGGTTAGTGGTTAGGG
98088094 GTT
1 GTT
98088097 AGGGGTTTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 2 0.07
28 19 0.70
29 6 0.22
ACGTcount: A:0.15, C:0.02, G:0.42, T:0.42
Consensus pattern (29 bp):
GTTTAAGGCTTATGGGTTAGTGGTTAGGG
Found at i:98088083 original size:7 final size:7
Alignment explanation
Indices: 98088057--98088148 Score: 87
Period size: 7 Copynumber: 12.9 Consensus size: 7
98088047 TATGGTTTAA
98088057 GGGTT-G
1 GGGTTAG
*
98088063 GGGTTTAA
1 GGG-TTAG
*
98088071 GGGTTAT
1 GGGTTAG
98088078 GGGTTAG
1 GGGTTAG
*
98088085 TGGTTAG
1 GGGTTAG
98088092 GGGTTAG
1 GGGTTAG
98088099 GGGTTTAG
1 GGG-TTAG
98088107 GGGTTAG
1 GGGTTAG
*
98088114 GGGTTAAT
1 GGGTT-AG
*
98088122 GGTTTAG
1 GGGTTAG
*
98088129 GGGTTAA
1 GGGTTAG
*
98088136 GGCTTAG
1 GGGTTAG
98088143 GGGTTA
1 GGGTTA
98088149 TTATTTTATG
Statistics
Matches: 69, Mismatches: 13, Indels: 7
0.78 0.15 0.08
Matches are distributed among these distances:
6 3 0.04
7 51 0.74
8 15 0.22
ACGTcount: A:0.16, C:0.01, G:0.48, T:0.35
Consensus pattern (7 bp):
GGGTTAG
Found at i:98088089 original size:22 final size:21
Alignment explanation
Indices: 98088057--98088148 Score: 87
Period size: 22 Copynumber: 4.3 Consensus size: 21
98088047 TATGGTTTAA
*
98088057 GGGTT-GGGGTTTAAGGGTTAT
1 GGGTTAGGGG-TTAAGGGTTAG
* *
98088078 GGGTTAGTGGTTAGGGGTTAG
1 GGGTTAGGGGTTAAGGGTTAG
* *
98088099 GGGTTTAGGGGTTAGGGGTTAAT
1 GGG-TTAGGGGTTAAGGGTT-AG
* *
98088122 GGTTTAGGGGTTAAGGCTTAG
1 GGGTTAGGGGTTAAGGGTTAG
98088143 GGGTTA
1 GGGTTA
98088149 TTATTTTATG
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
21 23 0.40
22 32 0.55
23 3 0.05
ACGTcount: A:0.16, C:0.01, G:0.48, T:0.35
Consensus pattern (21 bp):
GGGTTAGGGGTTAAGGGTTAG
Found at i:98088364 original size:21 final size:20
Alignment explanation
Indices: 98088340--98088396 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 20
98088330 ATTGTTTGTG
98088340 GTTTATGGTTTAAGGGATATA
1 GTTTA-GGTTTAAGGGATATA
*
98088361 GTTTAGGGTTTAAGAGATATA
1 GTTTA-GGTTTAAGGGATATA
98088382 GTTTAGAGTTTAAGG
1 GTTTAG-GTTTAAGG
98088397 TTATGGTGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
20 1 0.03
21 31 0.97
ACGTcount: A:0.30, C:0.00, G:0.30, T:0.40
Consensus pattern (20 bp):
GTTTAGGTTTAAGGGATATA
Found at i:98090711 original size:14 final size:14
Alignment explanation
Indices: 98090693--98090737 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
98090683 TAATGTATAT
98090693 ATATATCAATATG-
1 ATATATCAATATGC
*
98090706 -TATAT--ATATAC
1 ATATATCAATATGC
98090717 ATATATCAATATGC
1 ATATATCAATATGC
98090731 ATATATC
1 ATATATC
98090738 TTGGGTTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
10 4 0.15
12 10 0.38
14 12 0.46
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.40
Consensus pattern (14 bp):
ATATATCAATATGC
Found at i:98090720 original size:24 final size:24
Alignment explanation
Indices: 98090688--98090736 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
98090678 GATTGTAATG
* *
98090688 TATATATATATCAATATGTATATA
1 TATACATATATCAATATGCATATA
98090712 TATACATATATCAATATGCATATA
1 TATACATATATCAATATGCATATA
98090736 T
1 T
98090737 CTTGGGTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (24 bp):
TATACATATATCAATATGCATATA
Found at i:98090905 original size:25 final size:25
Alignment explanation
Indices: 98090848--98090910 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
98090838 TCCGCATCGT
* * *
98090848 CGTCGGCAGCCCTATGCTACATTTT
1 CGTCGGCATCCCTATGCTACATCTC
* * *
98090873 CATTGGCATCCCTTTGCTACATCTC
1 CGTCGGCATCCCTATGCTACATCTC
98090898 CGTCGGCATCCCT
1 CGTCGGCATCCCT
98090911 CTGTTGCTTC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.14, C:0.37, G:0.17, T:0.32
Consensus pattern (25 bp):
CGTCGGCATCCCTATGCTACATCTC
Found at i:98092759 original size:13 final size:14
Alignment explanation
Indices: 98092743--98092771 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
98092733 TTATAAATAT
98092743 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
98092756 TTATAATGGTTTAA
1 TTATAATGGTTTAA
98092770 TT
1 TT
98092772 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:98093233 original size:21 final size:21
Alignment explanation
Indices: 98093183--98093254 Score: 74
Period size: 21 Copynumber: 3.4 Consensus size: 21
98093173 TTAGAGCGGA
98093183 TGCAGCAGCGAGGGAGGCAAC
1 TGCAGCAGCGAGGGAGGCAAC
* *
98093204 -GACAACAGCGAGGGAGGCAGC
1 TG-CAGCAGCGAGGGAGGCAAC
** *
98093225 TGCAGCAGCGAAAGAGGCAAA
1 TGCAGCAGCGAGGGAGGCAAC
*
98093246 GGCAGCAGC
1 TGCAGCAGC
98093255 AATGGCAGCA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
20 1 0.02
21 39 0.95
22 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.40, T:0.03
Consensus pattern (21 bp):
TGCAGCAGCGAGGGAGGCAAC
Found at i:98093664 original size:43 final size:43
Alignment explanation
Indices: 98093617--98093800 Score: 208
Period size: 43 Copynumber: 4.3 Consensus size: 43
98093607 GTAACAAAAG
* *
98093617 CGCCGTTAAAAGCCATGACTTTTAGCGGCGTTTCACCCACAAA
1 CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCACCCACAAA
* * * *
98093660 CGCCGCTAAAAGCAATGACTTTTAACGGTGCTTCATCCACAAA
1 CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCACCCACAAA
* ** * *
98093703 CGCCGCTATAAGCCATGACTTTTAGCAACGCTTCACCTAAAAA
1 CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCACCCACAAA
* * * **
98093746 TGTCACTAAAAGCCATGACTTTTAGCGGCGCTT-TTCCAGCAAA
1 CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCACCCA-CAAA
98093789 CGCCGCTAAAAG
1 CGCCGCTAAAAG
98093801 TCAGGATCTT
Statistics
Matches: 112, Mismatches: 28, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
42 2 0.02
43 110 0.98
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.23
Consensus pattern (43 bp):
CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCACCCACAAA
Found at i:98095560 original size:93 final size:93
Alignment explanation
Indices: 98095451--98095622 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
98095441 CGCCCATAAG
* * *
98095451 CGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTCAATTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTCAACTCGGACTCAACTCA
98095516 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
98095544 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTCAACTCGGACTCAACTCA
98095609 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
98095623 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTCAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:98095619 original size:46 final size:46
Alignment explanation
Indices: 98095444--98095619 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
98095434 TGTAACCCGC
* *
98095444 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
98095490 CCATAAGTC-AATTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAG-CGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
98095540 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
98095583 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
98095620 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 9, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:98107456 original size:307 final size:307
Alignment explanation
Indices: 98106885--98107457 Score: 878
Period size: 307 Copynumber: 1.9 Consensus size: 307
98106875 AACCATTTGC
* * * *
98106885 AAAAATAGATGGGATTAGCACTGAAATAATTCATCATATACCTCATGCCTTTCAATAGTTTAATC
1 AAAAAAAGATGGGATTAGCACTGAAATAATTCATCATATACCTCATGCCCTTAAATAATTTAATC
*
98106950 AAAAGCATTCATATATACATTTCATCGAATCAATACCAAAAAGAAACATTCTTGTATGATCATTC
66 AAAAGCATTCATATATACATGTCATCGAATCAATACCAAAAAGAAACATTCTTGTATGATCATTC
* *
98107015 TCTAGCATAAATATTTTAATGGATAAACACATGTGTTAACAAACCATTTAAATATCAATCACAAA
131 TCTAGCATAAATATTTTAATGGATAAACACATGTATTAACAAACCATTTAAAGATCAATCACAAA
* * * * *
98107080 TTTTAATAGCCCAATGAACTATAGTAAGATAACTTGGCTACTCAGGTAACTAGATCACAATAGAG
196 TTTTAATAGCCCAATGAACTATAGTAACATAACTCGGATACTCAGGTAACTACATCACAATAAAG
98107145 AGCATCGAAACACTAAACTATAGTAACCTGAAAAACTATTTTCAAAA
261 AGCATCGAAACACTAAACTATAGTAACCTGAAAAACTATTTTCAAAA
* * *
98107192 AAAAAAAGATTGGATTAGCACT-AAATAAATTCATCATATACTTCATGCCCTTAAATAATTTCAT
1 AAAAAAAGATGGGATTAGCACTGAAAT-AATTCATCATATACCTCATGCCCTTAAATAATTTAAT
* * *
98107256 TAAAATCATTCATATATACATGTCATCGAATCAATACCAAAAAGAAACATTGTTGTATGATCATT
65 CAAAAGCATTCATATATACATGTCATCGAATCAATACCAAAAAGAAACATTCTTGTATGATCATT
* * * * *
98107321 CTCTAGCATAGATCTTTTAATGGATAAACTCATGTATTAACAAATCATTTATAGATCAATCACAA
130 CTCTAGCATAAATATTTTAATGGATAAACACATGTATTAACAAACCATTTAAAGATCAATCACAA
* * ** *
98107386 ATTTTAATAGCCTAGTGAACTATAGTAACATAACTCGGATACTTGGGTAACTACATCACACTAAA
195 ATTTTAATAGCCCAATGAACTATAGTAACATAACTCGGATACTCAGGTAACTACATCACAATAAA
98107451 GAGCATC
260 GAGCATC
98107458 AAAATGCTAA
Statistics
Matches: 237, Mismatches: 28, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
306 4 0.02
307 233 0.98
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.30
Consensus pattern (307 bp):
AAAAAAAGATGGGATTAGCACTGAAATAATTCATCATATACCTCATGCCCTTAAATAATTTAATC
AAAAGCATTCATATATACATGTCATCGAATCAATACCAAAAAGAAACATTCTTGTATGATCATTC
TCTAGCATAAATATTTTAATGGATAAACACATGTATTAACAAACCATTTAAAGATCAATCACAAA
TTTTAATAGCCCAATGAACTATAGTAACATAACTCGGATACTCAGGTAACTACATCACAATAAAG
AGCATCGAAACACTAAACTATAGTAACCTGAAAAACTATTTTCAAAA
Found at i:98112131 original size:25 final size:26
Alignment explanation
Indices: 98112084--98112132 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
98112074 AGGCAACACA
* * *
98112084 CACCCGTGTGGTCAGGTCGTGTGGCT
1 CACCCGTGTGCTCAGGCCATGTGGCT
98112110 CACCCGTGT-CTCAGGCCATGTGG
1 CACCCGTGTGCTCAGGCCATGTGG
98112133 GCATTCGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 11 0.55
26 9 0.45
ACGTcount: A:0.10, C:0.31, G:0.35, T:0.24
Consensus pattern (26 bp):
CACCCGTGTGCTCAGGCCATGTGGCT
Found at i:98116310 original size:26 final size:26
Alignment explanation
Indices: 98116271--98116337 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 26
98116261 AGTCATATCA
* *
98116271 GGAAGCTCACGAAGAGCC-TTTAATCG
1 GGAAGCTCATGAAGAGCCATATAAT-G
98116297 GGAAGCTCATGAAGAGCCATATAATG
1 GGAAGCTCATGAAGAGCCATATAATG
*
98116323 GGACGCTCAT-AAGAG
1 GGAAGCTCATGAAGAG
98116338 TTGCAGTGTG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.14
26 27 0.73
27 5 0.14
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.18
Consensus pattern (26 bp):
GGAAGCTCATGAAGAGCCATATAATG
Found at i:98117363 original size:16 final size:13
Alignment explanation
Indices: 98117329--98117356 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
98117319 CTTTATTTTA
98117329 TTATTTATCATCT
1 TTATTTATCATCT
98117342 TTATTTATCATCT
1 TTATTTATCATCT
98117355 TT
1 TT
98117357 CCAATTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.64
Consensus pattern (13 bp):
TTATTTATCATCT
Found at i:98120621 original size:27 final size:27
Alignment explanation
Indices: 98120589--98120642 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
98120579 CCAACACATA
98120589 GGCAAGGTAAGTATCATACTCTTTTCT
1 GGCAAGGTAAGTATCATACTCTTTTCT
98120616 GGCAAGGTAAGTATCATACTCTTTTCT
1 GGCAAGGTAAGTATCATACTCTTTTCT
98120643 AACATATTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGCAAGGTAAGTATCATACTCTTTTCT
Found at i:98137255 original size:422 final size:422
Alignment explanation
Indices: 98136471--98137271 Score: 1503
Period size: 422 Copynumber: 1.9 Consensus size: 422
98136461 GCCGTAAGTA
*
98136471 ACACACAGTCAGCCCCTATGGGTGTGTTGCCTGGCCGTGTGTCCCCTGCACTTAAAATTTTAGGT
1 ACACACAGTCAGCCCCCATGGGTGTGTTGCCTGGCCGTGTGTCCCCTGCACTTAAAATTTTAGGT
*
98136536 CAGTTCGCATGGTAGTAAACACACGCACAGAGACACAGGTGTGTGTCTTAACCGTGTGGAGGACA
66 CAGTTCGCATGGTAGTAAACACACGCACAGAGACACAGGTGTGTGTCTCAACCGTGTGGAGGACA
98136601 CGGCCTAGCACACGGGCGTGTGCCTTGGCCGTGTGCCTCAAAATGAGTGATGACAAAATAAACAG
131 CGGCCTAGCACACGGGCGTGTGCCTTGGCCGTGTGCCTCAAAATGAGTGATGACAAAATAAACAG
*
98136666 AATGTCCAGGTTTTTGGACACGAGCGACCACACGTGCATGTCTAGGCCGTGTGAAAACCCCGGTA
196 AATGTCCAGGTTTTTGGAAACGAGCGACCACACGTGCATGTCTAGGCCGTGTGAAAACCCCGGTA
98136731 GGTTTGAAATGGAAAATAAATTCAATTAATTCCACACGGGTAAGGGACACGGGCATGTTCCAAGC
261 GGTTTGAAATGGAAAATAAATTCAATTAATTCCACACGGGTAAGGGACACGGGCATGTTCCAAGC
* *
98136796 ACACGGGCATGTGCATTGCCTCCACACGGGCGTGTGAGGCTTAAACCTAGAAATATTAACCTAAT
326 ACAAGAGCATGTGCATTGCCTCCACACGGGCGTGTGAGGCTTAAACCTAGAAATATTAACCTAAT
98136861 ATTTGTGCATGTTGGTGTCCAGGCATTGTGTG
391 ATTTGTGCATGTTGGTGTCCAGGCATTGTGTG
*
98136893 ACACACAGTCAGCCCCCATGGGTGTGTTGTCTGGCCGTGTGTCCCCTGCACTTAAAATTTTAGGT
1 ACACACAGTCAGCCCCCATGGGTGTGTTGCCTGGCCGTGTGTCCCCTGCACTTAAAATTTTAGGT
* *
98136958 CAGTTTGCATGGTAGTAAACACACGCGCAGAGACACAGGTGTGTGTCTCAACCGTGTGGAGGACA
66 CAGTTCGCATGGTAGTAAACACACGCACAGAGACACAGGTGTGTGTCTCAACCGTGTGGAGGACA
*
98137023 CGGCCTAGCACACGGGCGTGTGCCTTGGCCGTGTGCCTCAAAATGAGTGATGACAAAATAAATAG
131 CGGCCTAGCACACGGGCGTGTGCCTTGGCCGTGTGCCTCAAAATGAGTGATGACAAAATAAACAG
98137088 AATGTCCAGGTTTTTGGAAACGAGCGACCACACGTGCATGTCTAGGCCGTGTGAAAACCCCGGTA
196 AATGTCCAGGTTTTTGGAAACGAGCGACCACACGTGCATGTCTAGGCCGTGTGAAAACCCCGGTA
*
98137153 GGTTTGAAATGGAAAATAAATTCAATTAATTCCACACGGGTAAGGGACACGGGCGTGTTCCAAGC
261 GGTTTGAAATGGAAAATAAATTCAATTAATTCCACACGGGTAAGGGACACGGGCATGTTCCAAGC
*
98137218 ACAAGAGCATGTGCATTGCCTCCATACGGGCGTGTGAGGCTTAAACCTAGAAAT
326 ACAAGAGCATGTGCATTGCCTCCACACGGGCGTGTGAGGCTTAAACCTAGAAAT
98137272 TTTCCTAAGA
Statistics
Matches: 368, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
422 368 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (422 bp):
ACACACAGTCAGCCCCCATGGGTGTGTTGCCTGGCCGTGTGTCCCCTGCACTTAAAATTTTAGGT
CAGTTCGCATGGTAGTAAACACACGCACAGAGACACAGGTGTGTGTCTCAACCGTGTGGAGGACA
CGGCCTAGCACACGGGCGTGTGCCTTGGCCGTGTGCCTCAAAATGAGTGATGACAAAATAAACAG
AATGTCCAGGTTTTTGGAAACGAGCGACCACACGTGCATGTCTAGGCCGTGTGAAAACCCCGGTA
GGTTTGAAATGGAAAATAAATTCAATTAATTCCACACGGGTAAGGGACACGGGCATGTTCCAAGC
ACAAGAGCATGTGCATTGCCTCCACACGGGCGTGTGAGGCTTAAACCTAGAAATATTAACCTAAT
ATTTGTGCATGTTGGTGTCCAGGCATTGTGTG
Found at i:98139576 original size:39 final size:39
Alignment explanation
Indices: 98139533--98139742 Score: 325
Period size: 39 Copynumber: 5.3 Consensus size: 39
98139523 GGACTAAGAT
98139533 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
98139572 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
98139611 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* * *
98139650 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
* *
98139690 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-C
98139730 CCGAAGGCATTTG
1 CCGAAGGCATTTG
98139743 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 114 0.71
40 46 0.29
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
Found at i:98139756 original size:40 final size:39
Alignment explanation
Indices: 98139482--98139742 Score: 245
Period size: 39 Copynumber: 6.6 Consensus size: 39
98139472 TGAATGATGT
* * * *
98139482 CCGGGCTAAGTCTCGAAGGC--TTGTGCTAAGTGACAATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAA
* *
98139521 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTATA-A
*
98139561 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA-A
*
98139600 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA-A
98139639 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
* *
98139677 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATAA
*
98139718 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
98139743 AACGAGGAGC
Statistics
Matches: 201, Mismatches: 11, Indels: 19
0.87 0.05 0.08
Matches are distributed among these distances:
39 129 0.64
40 62 0.31
41 10 0.05
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAA
Found at i:98156088 original size:18 final size:18
Alignment explanation
Indices: 98156065--98156106 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
98156055 GCTAGGTGCA
*
98156065 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATG
*
98156083 TATCCTAACTCTTATATG
1 TATCCTAACCCTTATATG
*
98156101 TTTCCT
1 TATCCT
98156107 TTTCTCAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.21, C:0.26, G:0.07, T:0.45
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:98156630 original size:9 final size:9
Alignment explanation
Indices: 98156616--98156646 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
98156606 TGAATAAGAC
98156616 AATATTTTT
1 AATATTTTT
98156625 AATATTTTT
1 AATATTTTT
*
98156634 TATATTTTT
1 AATATTTTT
98156643 AATA
1 AATA
98156647 AAATATAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
AATATTTTT
Found at i:98158127 original size:16 final size:16
Alignment explanation
Indices: 98158106--98158142 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
98158096 CTTATATGAA
98158106 GCATCCCACTTACCAT
1 GCATCCCACTTACCAT
98158122 GCATCCCACTTACCAT
1 GCATCCCACTTACCAT
98158138 GCATC
1 GCATC
98158143 TTTTCCAACG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.24, C:0.43, G:0.08, T:0.24
Consensus pattern (16 bp):
GCATCCCACTTACCAT
Found at i:98159907 original size:126 final size:126
Alignment explanation
Indices: 98159671--98159986 Score: 427
Period size: 126 Copynumber: 2.5 Consensus size: 126
98159661 CCATATAGGA
* * * * *
98159671 ACTACTGTAGCAAAAGAGCGTCCACATGTGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCAT
1 ACTACTATAGCAAAAGAGCGTCCACGTGGGAGTTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
* * *
98159736 GCTTGAAGCATTTTGGACACCATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTCCATAT
66 GCTTGAAGCATTTTGGACACCATTTGTTCAGAAACATCTTATCAAAATTATTTTTCCAGAT
* * *
98159797 ACTGCTATAGCAAAAGAGCGTCCACGTGGGAGTTTTTTTCAATAATTTTGCTAACAGTGCATCCT
1 ACTACTATAGCAAAAGAGCGTCCACGTGGGAGTTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
* * * *
98159862 GCTTGAAGCGTTTTGGATACTATTTGTTCAGAAACATCTTATCAAAATTATTTTTTCAGAT
66 GCTTGAAGCATTTTGGACACCATTTGTTCAGAAACATCTTATCAAAATTATTTTTCCAGAT
* ** * * *
98159923 ACTACTGTAGCAAAAGAATGTCCACGTGGAAGCTTTTTTT-AGTAATTTTACTGATAGTGCATCC
1 ACTACTATAGCAAAAGAGCGTCCACGTGGGAG-TTTTTTTCAGTAATTTTGCTGACAGTGCATCC
98159987 ATAAACACAA
Statistics
Matches: 165, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
126 158 0.96
127 7 0.04
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.36
Consensus pattern (126 bp):
ACTACTATAGCAAAAGAGCGTCCACGTGGGAGTTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
GCTTGAAGCATTTTGGACACCATTTGTTCAGAAACATCTTATCAAAATTATTTTTCCAGAT
Found at i:98160149 original size:24 final size:23
Alignment explanation
Indices: 98160099--98160149 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
98160089 GTTAATTTAA
* * *
98160099 TTAATTAACCATAAACCCCTTAT
1 TTAATTAACCATAAAACCCTAAC
*
98160122 TTAATTAACCTTAAAACCCTAACC
1 TTAATTAACCATAAAACCCTAA-C
98160146 TTAA
1 TTAA
98160150 ACCCTAAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.41, C:0.25, G:0.00, T:0.33
Consensus pattern (23 bp):
TTAATTAACCATAAAACCCTAAC
Found at i:98160153 original size:13 final size:14
Alignment explanation
Indices: 98160127--98160156 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
98160117 CTTATTTAAT
98160127 TAACCTTAAAACCC
1 TAACCTTAAAACCC
98160141 TAACCTT-AAACCC
1 TAACCTTAAAACCC
98160154 TAA
1 TAA
98160157 AACCCCAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.23
Consensus pattern (14 bp):
TAACCTTAAAACCC
Found at i:98163709 original size:13 final size:13
Alignment explanation
Indices: 98163688--98163758 Score: 79
Period size: 13 Copynumber: 5.5 Consensus size: 13
98163678 AAATTTTTCC
98163688 AAAGCACTTCTCA
1 AAAGCACTTCTCA
*
98163701 AAAGTACTTCTCA
1 AAAGCACTTCTCA
* * *
98163714 AAAACACTTTTCC
1 AAAGCACTTCTCA
* *
98163727 ACAGCACTTTTCA
1 AAAGCACTTCTCA
*
98163740 AAAGCACTTTTCA
1 AAAGCACTTCTCA
98163753 AAAGCA
1 AAAGCA
98163759 ATGAAGAACT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 49 1.00
ACGTcount: A:0.39, C:0.27, G:0.07, T:0.27
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:98167725 original size:23 final size:23
Alignment explanation
Indices: 98167677--98167729 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
98167667 AAAAAATAAT
* * *
98167677 TTCAAGTTAATCGAATCGAGTTA
1 TTCAAGTAAATCGAATCAAGTAA
98167700 TTCAAGTCAAATCGAAT-AAGTAA
1 TTCAAGT-AAATCGAATCAAGTAA
98167723 TTCAAGT
1 TTCAAGT
98167730 TTCGAGTTCG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 18 0.69
24 8 0.31
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (23 bp):
TTCAAGTAAATCGAATCAAGTAA
Found at i:98167888 original size:19 final size:19
Alignment explanation
Indices: 98167866--98167916 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
98167856 AAATTACAAA
98167866 AAAAATT-AAAATAAATTTT
1 AAAAATTCAAAAT-AATTTT
*
98167885 -AAAATTCAAAATATTTTT
1 AAAAATTCAAAATAATTTT
98167903 AAAAATTCTAAAAT
1 AAAAATTC-AAAAT
98167917 TTATATTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 11 0.39
19 12 0.43
20 5 0.18
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:98167966 original size:44 final size:44
Alignment explanation
Indices: 98167881--98167967 Score: 106
Period size: 44 Copynumber: 1.9 Consensus size: 44
98167871 TTAAAATAAA
* *
98167881 TTTTAAAATTCAAAATATTTTTAAAAATTCTAAAATTTATATTT
1 TTTTAAAATTCAAAATAATTTTAAAAATTCTAAAATATATATTT
98167925 TTTTAAAATT-ATAAA-AATTTTAAAAATTTCTAAAGAATATATA
1 TTTTAAAATTCA-AAATAATTTTAAAAA-TTCT-AA-AATATATA
98167968 AAAAAGGTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
43 11 0.30
44 17 0.46
45 2 0.05
46 7 0.19
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.46
Consensus pattern (44 bp):
TTTTAAAATTCAAAATAATTTTAAAAATTCTAAAATATATATTT
Found at i:98167989 original size:9 final size:9
Alignment explanation
Indices: 98167878--98168000 Score: 58
Period size: 9 Copynumber: 13.4 Consensus size: 9
98167868 AAATTAAAAT
98167878 AAATTTT-A
1 AAATTTTAA
*
98167886 AAA-TTCAA
1 AAATTTTAA
98167894 AATATTTTTAA
1 AA-A-TTTTAA
*
98167905 AAATTCT-A
1 AAATTTTAA
*
98167913 AAA-TTTAT
1 AAATTTTAA
** *
98167921 ATTTTTTTA
1 AAATTTTAA
*
98167930 AAATTATAA
1 AAATTTTAA
98167939 AAATTTTAA
1 AAATTTTAA
98167948 AAATTTCTAA
1 AAATTT-TAA
*
98167958 AGAATATATAAA
1 A-AAT-T-TTAA
**
98167970 AAAGGTT-A
1 AAATTTTAA
98167978 AAATTTTAA
1 AAATTTTAA
98167987 AAATTTTATA
1 AAATTTTA-A
98167997 AAAT
1 AAAT
98168001 AATAATTTTG
Statistics
Matches: 83, Mismatches: 20, Indels: 22
0.66 0.16 0.18
Matches are distributed among these distances:
7 4 0.05
8 17 0.20
9 36 0.43
10 10 0.12
11 11 0.13
12 4 0.05
13 1 0.01
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (9 bp):
AAATTTTAA
Found at i:98188714 original size:48 final size:48
Alignment explanation
Indices: 98188649--98188869 Score: 179
Period size: 48 Copynumber: 4.7 Consensus size: 48
98188639 GATACTAATT
* *
98188649 CCATATCCCAGATATGGTCTTACATGGGATCTCATACTGGTGCCGATG
1 CCATGTCCCAGATATGGTCTTACACGGGATCTCATACTGGTGCCGATG
* * *
98188697 CCATGTCCCAGACATGGTCTTACATGGGATCTCTTA-T--T---GATG
1 CCATGTCCCAGATATGGTCTTACACGGGATCTCATACTGGTGCCGATG
* * * ** * * * *
98188739 CCATGTCCTAGACATGGTCTTATACGAAATCACTTAAC-GGTACCGAAG
1 CCATGTCCCAGATATGGTCTTACACGGGATCTCAT-ACTGGTGCCGATG
* * * * * * *
98188787 CCATATCCCTGATATGGTATTATACGGGATCACAT-TTCGATGCCGATG
1 CCATGTCCCAGATATGGTCTTACACGGGATCTCATACT-GGTGCCGATG
98188835 CCATGTCCCAGATATGGTCTTACACGGGATCTCAT
1 CCATGTCCCAGATATGGTCTTACACGGGATCTCAT
98188870 TAACTATGGT
Statistics
Matches: 137, Mismatches: 27, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
42 33 0.24
43 1 0.01
45 2 0.01
47 1 0.01
48 100 0.73
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (48 bp):
CCATGTCCCAGATATGGTCTTACACGGGATCTCATACTGGTGCCGATG
Found at i:98188764 original size:138 final size:137
Alignment explanation
Indices: 98188597--98188867 Score: 325
Period size: 138 Copynumber: 2.0 Consensus size: 137
98188587 TGTCAGTGCC
* * * *
98188597 GATGCCATGTCCCTAACATAGTCTTATACGAGACCTCAC-ATCGATA-CTAATTCCATATCCCAG
1 GATGCCATGTCCCTAACATAGTCTTATACGA-A-ATCACTAACGATACCGAA-GCCATATCCCAG
* * * * *
98188660 ATATGGTCTTACATGGGATCTCATACT-GGTGCCGATGCCATGTCCCAGACATGGTCTTACATGG
63 ATATGGTATTACACGGGATCACAT-CTCGATGCCGATGCCATGTCCCAGACATGGTCTTACACGG
98188724 GATCTCTTATT
127 GATCTCTTATT
* * *
98188735 GATGCCATGT-CCTAGACATGGTCTTATACGAAATCACTTAACGGTACCGAAGCCATATCCCTGA
1 GATGCCATGTCCCTA-ACATAGTCTTATACGAAATCAC-TAACGATACCGAAGCCATATCCCAGA
* * *
98188799 TATGGTATTATACGGGATCACATTTCGATGCCGATGCCATGTCCCAGATATGGTCTTACACGGGA
64 TATGGTATTACACGGGATCACATCTCGATGCCGATGCCATGTCCCAGACATGGTCTTACACGGGA
98188864 TCTC
129 TCTC
98188868 ATTAACTATG
Statistics
Matches: 113, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
136 4 0.04
137 6 0.05
138 100 0.88
139 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (137 bp):
GATGCCATGTCCCTAACATAGTCTTATACGAAATCACTAACGATACCGAAGCCATATCCCAGATA
TGGTATTACACGGGATCACATCTCGATGCCGATGCCATGTCCCAGACATGGTCTTACACGGGATC
TCTTATT
Found at i:98188846 original size:186 final size:185
Alignment explanation
Indices: 98188510--98188869 Score: 443
Period size: 186 Copynumber: 1.9 Consensus size: 185
98188500 GAGTGCCAAA
*
98188510 GCCATGTCCCAGACATGGTCTTACATGAGACCACATATTGATGCCATATCCCAGATATGGTCTTA
1 GCCATGTCCCAGACATGGTCTTACATGAGACCACATATTGATGCCATATCCCAGACATGGTCTTA
* * ** * * * *
98188575 TACGAAGTCTCATGTCAGTGCCGATGCCATGTCCCTAACATAGTCTTATACGAGACCTCACATCG
66 TACGAAATCACATAACAGTACCGAAGCCATATCCCTAACATAGTATTATACGAGA-CTCACATCG
* * *
98188640 ATACTAATTCCATATCCCAGATATGGTCTTACATGGGATCTCATACTGGTGCCGAT
130 ATACCAATGCCATATCCCAGATATGGTCTTACACGGGATCTCATACTGGTGCCGAT
* * * * * *
98188696 GCCATGTCCCAGACATGGTCTTACATGGGATCTCTTATTGATGCCATGTCCTAGACATGGTCTTA
1 GCCATGTCCCAGACATGGTCTTACATGAGACCACATATTGATGCCATATCCCAGACATGGTCTTA
* * * * * *
98188761 TACGAAATCACTTAACGGTACCGAAGCCATATCCCTGATATGGTATTATACGGGA-TCACATTTC
66 TACGAAATCACATAACAGTACCGAAGCCATATCCCTAACATAGTATTATACGAGACTCACA--TC
* * *
98188825 GATGCCGATGCCATGTCCCAGATATGGTCTTACACGGGATCTCAT
129 GATACCAATGCCATATCCCAGATATGGTCTTACACGGGATCTCAT
98188870 TAACTATGGT
Statistics
Matches: 145, Mismatches: 27, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
184 5 0.03
186 140 0.97
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (185 bp):
GCCATGTCCCAGACATGGTCTTACATGAGACCACATATTGATGCCATATCCCAGACATGGTCTTA
TACGAAATCACATAACAGTACCGAAGCCATATCCCTAACATAGTATTATACGAGACTCACATCGA
TACCAATGCCATATCCCAGATATGGTCTTACACGGGATCTCATACTGGTGCCGAT
Found at i:98189399 original size:16 final size:16
Alignment explanation
Indices: 98189378--98189410 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
98189368 TTTTTATCAA
98189378 TCAATTTA-TACCTTTT
1 TCAATTTAGT-CCTTTT
98189394 TCAATTTAGTCCTTTT
1 TCAATTTAGTCCTTTT
98189410 T
1 T
98189411 AGGTGTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.94
17 1 0.06
ACGTcount: A:0.21, C:0.18, G:0.03, T:0.58
Consensus pattern (16 bp):
TCAATTTAGTCCTTTT
Found at i:98194199 original size:51 final size:51
Alignment explanation
Indices: 98194122--98194223 Score: 152
Period size: 51 Copynumber: 2.0 Consensus size: 51
98194112 AGTCTCGAAG
*
98194122 TGATAGGTAAAGTTAGGCAATTGGATACCTCGGGCT-ACTAAGTAATGTACC
1 TGATAGGTAAAGTTAGGCAATCGGATACCTCGGGCTGAC-AAGTAATGTACC
* * *
98194173 TGATAGGTAAAGTTAGGCAGTCGGATACCTCGGGTTGGCAAGTAATGTACC
1 TGATAGGTAAAGTTAGGCAATCGGATACCTCGGGCTGACAAGTAATGTACC
98194224 ATCTCCTCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 45 0.98
52 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.26
Consensus pattern (51 bp):
TGATAGGTAAAGTTAGGCAATCGGATACCTCGGGCTGACAAGTAATGTACC
Found at i:98194784 original size:18 final size:18
Alignment explanation
Indices: 98194761--98194795 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
98194751 AAGCAGGAAG
98194761 GTTTGCTAGAGCTGGTCT
1 GTTTGCTAGAGCTGGTCT
*
98194779 GTTTGCTAGAGTTGGTC
1 GTTTGCTAGAGCTGGTC
98194796 ATTTATCGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.14, G:0.34, T:0.40
Consensus pattern (18 bp):
GTTTGCTAGAGCTGGTCT
Found at i:98198261 original size:47 final size:46
Alignment explanation
Indices: 98198211--98198422 Score: 223
Period size: 47 Copynumber: 4.5 Consensus size: 46
98198201 GTGCCAATGC
* **
98198211 CATGTCCCAGACATGGTCTTACATTGGCTCACATCTCAAGTTGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGCCGATG
** *
98198257 CCATGTCCCAGACATGGTCTTACACTTACT-ATCATCTCGTAGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTC-AAGCCGATG
* *
98198305 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCAATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA-GCCGATG
* * *** *
98198351 TCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCAAGCCGATG
98198399 CATGTCCCAGACAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
98198423 AGCCAACAAT
Statistics
Matches: 142, Mismatches: 16, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
45 1 0.01
46 36 0.25
47 74 0.52
48 30 0.21
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGCCGATG
Found at i:98198372 original size:94 final size:93
Alignment explanation
Indices: 98198211--98198425 Score: 288
Period size: 94 Copynumber: 2.3 Consensus size: 93
98198201 GTGCCAATGC
* * **
98198211 CATGTCCCAGACATGGTCTTACATTGGCTCACATCTCAAGTTGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACAT-GTCTTACACTAGCTCACATCTCAAGCCGATGCCATGTCCCAGACATGGTC
* *
98198276 TTACACTTACTATCAT-CTCGTAGCCGATG
65 TTACACTGACTATCATAAT-GTAGCCGATG
* *
98198305 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATGTCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCTCACATCTCAA-GCCGATGCCATGTCCCAGACATGGTC
* * * *
98198370 TTACACTGGCTCTCATAATGTGGCTGATG
65 TTACACTGACTATCATAATGTAGCCGATG
98198399 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
98198426 CAACAATAAC
Statistics
Matches: 107, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
93 21 0.20
94 85 0.79
95 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.29
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCTCACATCTCAAGCCGATGCCATGTCCCAGACATGGTCT
TACACTGACTATCATAATGTAGCCGATG
Found at i:98198803 original size:30 final size:30
Alignment explanation
Indices: 98198763--98198819 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
98198753 AATTCACATC
* *
98198763 TTTGGTAAAATGACCATTTTGCCCCTAGAA
1 TTTGGCAAAATGACCATTTTACCCCTAGAA
*
98198793 TTTGGCAAAATGGCCATTTTACCCCTA
1 TTTGGCAAAATGACCATTTTACCCCTA
98198820 TGCTTGAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (30 bp):
TTTGGCAAAATGACCATTTTACCCCTAGAA
Found at i:98203365 original size:51 final size:50
Alignment explanation
Indices: 98203264--98203514 Score: 286
Period size: 47 Copynumber: 5.2 Consensus size: 50
98203254 TTAGGATTTT
* * * *
98203264 ATGTGATGAATGTGAA-TGTGTATATA--AGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACTGTATATATATGTGTGATAAGGCCGAATGGCCA
*
98203311 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAA-CTGTATATATATGTGTGATAAGGCCGAATGGCCA
*** * **
98203362 ATGTGATGAATGTGAAC---ATGCGTATGTGTGATAAGGCCAAATGGAAA
1 ATGTGATGAATGTGAACTGTATATATATGTGTGATAAGGCCGAATGGCCA
98203409 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-CTGTATATATATGTGTGATAAGGCCGAATGGCCA
*** *
98203460 ATGTGATGAATGTGAAC---ATGCGTATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACTGTATATATATGTGTGATAAGGCCGAATGGCCA
98203507 ATGTGATG
1 ATGTGATG
98203515 TGTAATATCC
Statistics
Matches: 174, Mismatches: 22, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
47 89 0.51
48 1 0.01
49 9 0.05
50 2 0.01
51 73 0.42
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (50 bp):
ATGTGATGAATGTGAACTGTATATATATGTGTGATAAGGCCGAATGGCCA
Found at i:98203395 original size:98 final size:98
Alignment explanation
Indices: 98203293--98203514 Score: 399
Period size: 98 Copynumber: 2.3 Consensus size: 98
98203283 GTATATAAGA
*
98203293 GATAAGGCCGAATGGCAAATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCTGAATG
1 GATAAGGCCGAATGGCAAATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATG
98203358 GCCAATGTGATGAATGTGAACATGCGTATGTGT
66 GCCAATGTGATGAATGTGAACATGCGTATGTGT
* *
98203391 GATAAGGCCAAATGGAAAATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATG
1 GATAAGGCCGAATGGCAAATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATG
98203456 GCCAATGTGATGAATGTGAACATGCGTATGTGT
66 GCCAATGTGATGAATGTGAACATGCGTATGTGT
* *
98203489 GATAAGGCCGAATGACCAATGTGATG
1 GATAAGGCCGAATGGCAAATGTGATG
98203515 TGTAATATCC
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 117 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (98 bp):
GATAAGGCCGAATGGCAAATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATG
GCCAATGTGATGAATGTGAACATGCGTATGTGT
Found at i:98204855 original size:46 final size:46
Alignment explanation
Indices: 98204805--98204980 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
98204795 TGATTGAGCA
*
98204805 TCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
98204851 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
98204896 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
98204944 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
98204981 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:98204961 original size:93 final size:93
Alignment explanation
Indices: 98204802--98204973 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
98204792 GGATGATTGA
*
98204802 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
98204867 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
98204895 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
98204959 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
98204974 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:98206366 original size:47 final size:47
Alignment explanation
Indices: 98206287--98206380 Score: 145
Period size: 47 Copynumber: 2.0 Consensus size: 47
98206277 GGGCGTTACA
*
98206287 TGATGAATGTGAACATGAGTATGTGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAACATGAGTATATGTGATAAGGCCGAATGGCCAATG
* *
98206334 TGATGAATGTGAACATGTA-TATATGTGGTAAGGCCGAATGGCTAATG
1 TGATGAATGTGAACATG-AGTATATGTGATAAGGCCGAATGGCCAATG
98206381 AGAAATGTGT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 42 0.98
48 1 0.02
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
TGATGAATGTGAACATGAGTATATGTGATAAGGCCGAATGGCCAATG
Found at i:98206416 original size:46 final size:46
Alignment explanation
Indices: 98206354--98206489 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
98206344 GAACATGTAT
*
98206354 ATATGTGGTAAGGCCGAATGGCTAATGAGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATAG
* * * *
98206400 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATAG
* * *
98206446 ATATGTGGTAAAGCCAAATGGCTAAT-ATGAGATATGTATGAGAT
1 ATATGTGGTAAAGCCGAATGGCTAATGA-GAAATGTGTATGAGAT
98206490 GTGTATATAT
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.36, C:0.08, G:0.30, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATAG
Found at i:98208312 original size:34 final size:34
Alignment explanation
Indices: 98208274--98208343 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
98208264 CATCACATGT
*
98208274 TAGTCAATGTGTATTATTCCAAATTCATATATCA
1 TAGTCAATGTGCATTATTCCAAATTCATATATCA
* *
98208308 TAGTCAATTTGCATTTTTCCAAATTCATATATCA
1 TAGTCAATGTGCATTATTCCAAATTCATATATCA
98208342 TA
1 TA
98208344 TATAACATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.34, C:0.16, G:0.07, T:0.43
Consensus pattern (34 bp):
TAGTCAATGTGCATTATTCCAAATTCATATATCA
Found at i:98208570 original size:45 final size:46
Alignment explanation
Indices: 98208514--98208655 Score: 132
Period size: 45 Copynumber: 3.0 Consensus size: 46
98208504 TCTGAGATGA
* **
98208514 TGAACAATAAGCTCTAT-TGAGCTGAAACGGTAAGCT-TTATCGAGC
1 TGAACAGTAAGCTCTATATGAGCTGAAACGGTAAGCTCCAAT-GAGC
* * *
98208559 TGAACAGTAAGCTC-ATACGACCTGAAATGGTAAGCTCCAATGAGC
1 TGAACAGTAAGCTCTATATGAGCTGAAACGGTAAGCTCCAATGAGC
98208604 TGATAACAGTAAGCTCT-TATGAGCTGATATATCGGTAAGCT-CATATGAGC
1 TG--AACAGTAAGCTCTATATGAGCTGA-A-A-CGGTAAGCTCCA-ATGAGC
98208654 TG
1 TG
98208656 TGGTGAGTCT
Statistics
Matches: 79, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
44 2 0.03
45 35 0.44
46 2 0.03
47 20 0.25
48 1 0.01
49 3 0.04
50 16 0.20
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (46 bp):
TGAACAGTAAGCTCTATATGAGCTGAAACGGTAAGCTCCAATGAGC
Found at i:98208618 original size:24 final size:26
Alignment explanation
Indices: 98208588--98208655 Score: 79
Period size: 24 Copynumber: 2.7 Consensus size: 26
98208578 ACCTGAAATG
98208588 GTAAGCTCCAATGAGCTGATA-A-CA
1 GTAAGCTCCAATGAGCTGATATATCA
** *
98208612 GTAAGCTCTTATGAGCTGATATATCG
1 GTAAGCTCCAATGAGCTGATATATCA
98208638 GTAAGCT-CATATGAGCTG
1 GTAAGCTCCA-ATGAGCTG
98208656 TGGTGAGTCT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 19 0.53
25 1 0.03
26 16 0.44
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
GTAAGCTCCAATGAGCTGATATATCA
Found at i:98208650 original size:26 final size:25
Alignment explanation
Indices: 98208521--98208655 Score: 103
Period size: 23 Copynumber: 5.7 Consensus size: 25
98208511 TGATGAACAA
98208521 TAAGCTC-TATTGAGCTGA-AA-CGG
1 TAAGCTCATA-TGAGCTGATAATCGG
* *
98208544 TAAGCT-TTATCGAGCTG--AA-CAG
1 TAAGCTCATAT-GAGCTGATAATCGG
* *
98208566 TAAGCTCATACGACCTGA-AAT-GG
1 TAAGCTCATATGAGCTGATAATCGG
*
98208589 TAAGCTCCA-ATGAGCTGATAA-CAG
1 TAAGCT-CATATGAGCTGATAATCGG
*
98208613 TAAGCTCTTATGAGCTGATATATCGG
1 TAAGCTCATATGAGCTGATA-ATCGG
98208639 TAAGCTCATATGAGCTG
1 TAAGCTCATATGAGCTG
98208656 TGGTGAGTCT
Statistics
Matches: 90, Mismatches: 11, Indels: 19
0.75 0.09 0.16
Matches are distributed among these distances:
22 16 0.18
23 33 0.37
24 22 0.24
25 1 0.01
26 18 0.20
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (25 bp):
TAAGCTCATATGAGCTGATAATCGG
Found at i:98212817 original size:31 final size:31
Alignment explanation
Indices: 98212734--98212819 Score: 129
Period size: 31 Copynumber: 2.8 Consensus size: 31
98212724 TCAATCTCAG
* *
98212734 CATAT-ACTGGGCTGAAGCCTTCACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* *
98212764 CATGTCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
98212795 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
98212820 TATAACGATA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
30 4 0.08
31 45 0.92
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:98213052 original size:25 final size:26
Alignment explanation
Indices: 98213024--98213157 Score: 179
Period size: 26 Copynumber: 5.3 Consensus size: 26
98213014 CTGGAGGCCT
* *
98213024 AGCCTTTTTTAAT-AACTGGGGCAAA
1 AGCCCTTTTTGATAAACTGGGGCAAA
98213049 AGCCCTTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTTGATAAACTGGGGCAAA
98213075 AGCCCTTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTTGATAAACTGGGGCAAA
98213101 AGCCCTTTTTTG-TAAACTGGGGC-AA
1 AGCCC-TTTTTGATAAACTGGGGCAAA
* * *
98213126 AGCCCTTTTCGGT-AACTGGGGC-AT
1 AGCCCTTTTTGATAAACTGGGGCAAA
98213150 AGCCCTTT
1 AGCCCTTT
98213158 GGCACTTCCT
Statistics
Matches: 102, Mismatches: 4, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
24 23 0.23
25 19 0.19
26 54 0.53
27 6 0.06
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTTGATAAACTGGGGCAAA
Found at i:98213236 original size:11 final size:11
Alignment explanation
Indices: 98213205--98213252 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
98213195 AAATGAATAC
98213205 ATCATGTGCAT
1 ATCATGTGCAT
*
98213216 ATCA--TACAT
1 ATCATGTGCAT
98213225 ATCATGTGCAT
1 ATCATGTGCAT
*
98213236 ATCATGT-CAA
1 ATCATGTGCAT
98213246 ATCATGT
1 ATCATGT
98213253 ATATTAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 9 0.28
11 15 0.47
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:98220789 original size:31 final size:31
Alignment explanation
Indices: 98220706--98220791 Score: 129
Period size: 31 Copynumber: 2.8 Consensus size: 31
98220696 TCAATCTCAA
*
98220706 CATAT-ACTGGGCCGAAGCCTTCACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* *
98220736 CATGTCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
*
98220767 CATATCACTAGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
98220792 TATAACGATA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
30 4 0.08
31 45 0.92
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:98221047 original size:26 final size:26
Alignment explanation
Indices: 98221001--98221129 Score: 160
Period size: 26 Copynumber: 5.1 Consensus size: 26
98220991 GCCTAGCCTC
*
98221001 TTTTAATAAA-TGGGGCAAAAGCCCT
1 TTTTGATAAACTGGGGCAAAAGCCCT
98221026 TTTTGATAAACTGGGGCAAAAGCCCT
1 TTTTGATAAACTGGGGCAAAAGCCCT
98221052 TTTTGATAAACTGGGGCAAAAGCCCT
1 TTTTGATAAACTGGGGCAAAAGCCCT
* * *
98221078 TTTCGGTAAACTAGGGC-AAAGCCC-
1 TTTTGATAAACTGGGGCAAAAGCCCT
* *
98221102 TTTTCAGT-AACTGGGGC-ATAGCCCT
1 TTTTGA-TAAACTGGGGCAAAAGCCCT
98221127 TTT
1 TTT
98221130 GCACTTCCTC
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
24 17 0.18
25 20 0.22
26 55 0.60
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
TTTTGATAAACTGGGGCAAAAGCCCT
Found at i:98221207 original size:11 final size:11
Alignment explanation
Indices: 98221176--98221213 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
98221166 AAATGAATAC
98221176 ATCATGTGCAT
1 ATCATGTGCAT
*
98221187 ATCA--TACAT
1 ATCATGTGCAT
98221196 ATCATGTGCAT
1 ATCATGTGCAT
98221207 ATCATGT
1 ATCATGT
98221214 AAAATCATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.35
11 15 0.65
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:98225878 original size:27 final size:27
Alignment explanation
Indices: 98225840--98225896 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
98225830 ATCCACAATA
*
98225840 TATGCATGATCTTAGCCACCGTTAATG
1 TATGCATGATCTTAGCCACCGGTAATG
98225867 TATGCATGATCTTAGCCACCGGTAATG
1 TATGCATGATCTTAGCCACCGGTAATG
98225894 TAT
1 TAT
98225897 CTATCATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (27 bp):
TATGCATGATCTTAGCCACCGGTAATG
Found at i:98243859 original size:19 final size:19
Alignment explanation
Indices: 98243835--98243873 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
98243825 CTATTCCTTC
*
98243835 TCTGAATTAGAGCTTAGCT
1 TCTGAATAAGAGCTTAGCT
98243854 TCTGAATAAGAGCTTAGCT
1 TCTGAATAAGAGCTTAGCT
98243873 T
1 T
98243874 GAATCAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (19 bp):
TCTGAATAAGAGCTTAGCT
Found at i:98248537 original size:13 final size:13
Alignment explanation
Indices: 98248521--98248553 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
98248511 TCTTTAAACT
*
98248521 TTTTCTTATCAAG
1 TTTTCTTACCAAG
98248534 TTTTCTTACCAAG
1 TTTTCTTACCAAG
98248547 TTTTCTT
1 TTTTCTT
98248554 TCTTGGAGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.18, C:0.18, G:0.06, T:0.58
Consensus pattern (13 bp):
TTTTCTTACCAAG
Found at i:98250930 original size:47 final size:50
Alignment explanation
Indices: 98250856--98250981 Score: 150
Period size: 47 Copynumber: 2.6 Consensus size: 50
98250846 TATAATGCCG
* * *
98250856 ATGCCATGTCCCAGACATGGTTTTACACTAGCTCAT-C-CAT-CAAGTCA
1 ATGCAATGTCCCAGACATGGTCTTACACTAGCTCATACACATCCAAGCCA
* * * * * *
98250903 ATGCTATGTCCCAGACGTGGTCTTACACTAGCTCTTACATATCCATGCCG
1 ATGCAATGTCCCAGACATGGTCTTACACTAGCTCATACACATCCAAGCCA
98250953 ATGCAATGTCCCAGACATGGTCTTACACT
1 ATGCAATGTCCCAGACATGGTCTTACACT
98250982 GACACCTCTA
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
47 32 0.48
48 1 0.02
49 2 0.03
50 31 0.47
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (50 bp):
ATGCAATGTCCCAGACATGGTCTTACACTAGCTCATACACATCCAAGCCA
Found at i:98250971 original size:97 final size:92
Alignment explanation
Indices: 98250845--98251074 Score: 250
Period size: 97 Copynumber: 2.4 Consensus size: 92
98250835 TAAACATAGG
* * * *
98250845 ATATAATGCCGATGCCATGTCCCAGACATGGTTTTACACT-AGCTCATCCAT-CAAGTCAATGCT
1 ATATCATGCCGATG-CATGTCCCAGACATGGTCTTACACTGA-CACATCCATACAAGTCAATGCC
* *
98250908 ATGTCCCAGACGTGGTCTTACACTAGCTCTTAC
64 ATGTCCCAGACATGGTCTTACACT-G-AC--AC
* * ** *
98250941 ATATCCATGCCGATGCAATGTCCCAGACATGGTCTTACACTGACACCTCTATACCTGTCGATGCC
1 ATAT-CATGCCGATGC-ATGTCCCAGACATGGTCTTACACTGACACATCCATACAAGTCAATGCC
98251006 ATGTCCCAGACATGGTCTTACACTGACAC
64 ATGTCCCAGACATGGTCTTACACTGACAC
*
98251035 ATCTCATAGCCGATGCATGTCCCAGACAT-GTCTTACACTG
1 ATATCAT-GCCGATGCATGTCCCAGACATGGTCTTACACTG
98251075 GCTTACATAT
Statistics
Matches: 117, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
92 11 0.09
93 16 0.14
94 13 0.11
96 6 0.05
97 39 0.33
98 32 0.27
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (92 bp):
ATATCATGCCGATGCATGTCCCAGACATGGTCTTACACTGACACATCCATACAAGTCAATGCCAT
GTCCCAGACATGGTCTTACACTGACAC
Found at i:98251018 original size:48 final size:49
Alignment explanation
Indices: 98250851--98251074 Score: 209
Period size: 48 Copynumber: 4.7 Consensus size: 49
98250841 TAGGATATAA
* * * *
98250851 TGCCGATGCCATGTCCCAGACATGGTTTTACACT-AGCTCATCCAT-CA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGAGCACATCTATACC
* * * * * * *
98250898 AGTCAATGCTATGTCCCAGACGTGGTCTTACACT-AGCTCTTAC-ATATCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGAGCACAT-CTATA-CC
* *
98250947 ATGCCGATGCAATGTCCCAGACATGGTCTTACACTGA-CACCTCTATACC
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGAGCACATCTATACC
*
98250996 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGA-CACATCTCATA--
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGAGCACATCT-ATACC
98251043 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTG
98251075 GCTTACATAT
Statistics
Matches: 151, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
44 11 0.07
45 14 0.09
46 6 0.04
47 36 0.24
48 41 0.27
49 7 0.05
50 35 0.23
51 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (49 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGAGCACATCTATACC
Found at i:98254949 original size:46 final size:46
Alignment explanation
Indices: 98254817--98255171 Score: 237
Period size: 46 Copynumber: 7.6 Consensus size: 46
98254807 GGTATAATGT
* * * *
98254817 CGATGCCATGTCCCAAACATGGTCTTACACTGACAC-C-TCTATACGTGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCTA--TGC
* * *
98254865 CGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCT-TGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCTAT-GC
* * * *
98254911 CGATGCATGGCTCAGACATGTCTTACACTGGCT-TACATCAT-GAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATC-TCTATGC
* * * * *
98254957 TGAGGCATTTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCTATGC
* * *
98255003 CGATGCCATGTCCCAAACATGGTCTTACACT-G-ACACATCTCCTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCT-CTATGC
* * * *
98255049 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATTC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCTATGC
* * * * *
98255095 CGATGCCATGTCTCAGACATGGGCTTACACTGGCTCTCATAATGT-GGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCTATGC
*
98255143 CGATGCATGTCCTAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
98255172 AGCACACAAA
Statistics
Matches: 246, Mismatches: 43, Indels: 38
0.75 0.13 0.12
Matches are distributed among these distances:
44 20 0.08
45 31 0.13
46 85 0.35
47 44 0.18
48 65 0.26
49 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCTATGC
Found at i:98254996 original size:92 final size:94
Alignment explanation
Indices: 98254812--98255174 Score: 347
Period size: 92 Copynumber: 3.9 Consensus size: 94
98254802 CATAGGGTAT
* * * * *
98254812 AATGTCGATGCCATGTCCCAAACATGGTCTTACACTGAC--ACCTCTAT-ACGTGCCGATGCCAT
1 AATGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTTACATC-ATGA-G-GCCGATG-CAT
* *
98254874 GTCCCAGACATGGTCTTACACT-G-ACACATCT-
62 GTCCCAGACAT-GTCTTACACTAGCTCTCATCTC
** * * * *
98254905 TGTAGCCGATG-CATGGCTCAGACAT-GTCTTACACTGGCTTACATCATGAGGCTGAGGCATTTC
1 AAT-GCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTTACATCATGAGGCCGATGCATGTC
98254968 CCAGACATGTCTTACACTAGCTCTCATCTC
65 CCAGACATGTCTTACACTAGCTCTCATCTC
* * * *
98254998 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGAC--ACATC-TCCTA-GCCGATGCATGT
1 AATGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTTACATCAT--GAGGCCGATGCATGT
*
98255059 CCCAGACATGTCTTACACTAGCTCTCGTCTC
64 CCCAGACATGTCTTACACTAGCTCTCATCTC
* * * *
98255090 AATTCCGATGCCATGTCTCAGACATGGGCTTACACTGGCTCT-CATAATGTGGCCGATGCATGTC
1 AATGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCT-TACATCATGAGGCCGATGCATGTC
*
98255154 CTAGACATGTCTTACACTAGC
65 CCAGACATGTCTTACACTAGC
98255175 ACACAAATAA
Statistics
Matches: 221, Mismatches: 33, Indels: 31
0.78 0.12 0.11
Matches are distributed among these distances:
90 10 0.05
91 15 0.07
92 108 0.49
93 28 0.13
94 59 0.27
95 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (94 bp):
AATGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTTACATCATGAGGCCGATGCATGTCC
CAGACATGTCTTACACTAGCTCTCATCTC
Found at i:98255162 original size:186 final size:184
Alignment explanation
Indices: 98254812--98255174 Score: 459
Period size: 186 Copynumber: 2.0 Consensus size: 184
98254802 CATAGGGTAT
* *
98254812 AATGTCGATGCCATGTCCCAAACATGGTCTTACACTGACACCTCTATACGTGCCGATGCCATGTC
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACACATCTATAC--GCCGATGCCATGTC
** *
98254877 CCAGACATGGTCTTACACTGACACATCTTGTAGCCGATGCATGGCTCAGACATGTCTTACACTGG
64 CCAGACATGGTCTTACACTGACACATCTTCAAGCCGATGCATGGCTCAGACATGGCTTACACTGG
* * *
98254942 CTTACATCATGAGGCTGAGGCATTTCCCAGACATGTCTTACACTAGCTCTCATCTC
129 CTTACATAATGAGGCCGAGGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTC
*
98254998 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACACATCTCCTA-GCCGATG-CATGTCC
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACACATCT-ATACGCCGATGCCATGTCC
* * *
98255061 CAGACAT-GTCTTACACT-AGCTC-TCGTCTCAATTCCGATGCCATGTCTCAGACATGGGCTTAC
65 CAGACATGGTCTTACACTGA-CACATC-T-TCAA-GCCGATG-CATGGCTCAGACAT-GGCTTAC
* * *
98255123 ACTGGCTCT-CATAATGTGGCCGATGCATGTCCTAGACATGTCTTACACTAGC
124 ACTGGCT-TACATAATGAGGCCGAGGCATGTCCCAGACATGTCTTACACTAGC
98255175 ACACAAATAA
Statistics
Matches: 154, Mismatches: 15, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
181 3 0.02
182 13 0.08
183 16 0.10
184 13 0.08
185 13 0.08
186 93 0.60
187 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (184 bp):
AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACACATCTATACGCCGATGCCATGTCCC
AGACATGGTCTTACACTGACACATCTTCAAGCCGATGCATGGCTCAGACATGGCTTACACTGGCT
TACATAATGAGGCCGAGGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTC
Found at i:98255166 original size:138 final size:138
Alignment explanation
Indices: 98254817--98255171 Score: 391
Period size: 138 Copynumber: 2.6 Consensus size: 138
98254807 GGTATAATGT
* * * *
98254817 CGATGCCATGTCCCAAACATGGTCTTACACTGACACCTCTATACGTGCCGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTC-ATAAGTGCCGATGCCATGTCCCAGA
** * *
98254882 CATGGTCTTACACTGACACATCTTGTAGCCGATGCATGGCTCAGACATGTCTTACACTGGCTTAC
64 CATGGTCTTACACTGACACATCTCCTAGCCGATGCATGGCCCAGACATGTCTTACACTAGCTTAC
*
98254947 ATCATGAGGC
129 ATCATAAGGC
* * * * *
98254957 TGA-GGCATTTCCCAGACAT-GTCTTACACTAGCTCTCATCTCAA-TGCCGATGCCATGTCCCAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA--T-AAGTGCCGATGCCATGTCCCAG
*
98255019 ACATGGTCTTACACTGACACATCTCCTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT
63 ACATGGTCTTACACTGACACATCTCCTAGCCGATGCATGGCCCAGACATGTCTTACACTAGCT-T
* **
98255084 -CGTC-TCAATTC
127 ACATCAT-AAGGC
* * *
98255095 CGATGCCATGTCTCAGACATGGGCTTACACTGGCTCTCATAATGTGGCCGATG-CATGTCCTAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAA-GT-GCCGATGCCATGTCCCAGA
98255159 CAT-GTCTTACACT
64 CATGGTCTTACACT
98255172 AGCACACAAA
Statistics
Matches: 179, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
136 1 0.01
137 6 0.03
138 106 0.59
139 41 0.23
140 25 0.14
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (138 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAGTGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGACACATCTCCTAGCCGATGCATGGCCCAGACATGTCTTACACTAGCTTACAT
CATAAGGC
Found at i:98259577 original size:20 final size:20
Alignment explanation
Indices: 98259552--98259595 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
98259542 AACAGGGGTC
*
98259552 ACACACCCGTGTGGTTTGGA
1 ACACACCCATGTGGTTTGGA
*
98259572 ACACACCCATGTGGTTTGGG
1 ACACACCCATGTGGTTTGGA
98259592 ACAC
1 ACAC
98259596 GCATGTATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (20 bp):
ACACACCCATGTGGTTTGGA
Found at i:98283686 original size:40 final size:40
Alignment explanation
Indices: 98283631--98283708 Score: 156
Period size: 40 Copynumber: 1.9 Consensus size: 40
98283621 ATGGGTTGTT
98283631 ACAACCTAACTTTCATAAAACTAGGCTCACTAAGGAGCTA
1 ACAACCTAACTTTCATAAAACTAGGCTCACTAAGGAGCTA
98283671 ACAACCTAACTTTCATAAAACTAGGCTCACTAAGGAGC
1 ACAACCTAACTTTCATAAAACTAGGCTCACTAAGGAGC
98283709 ACTATCACTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.40, C:0.26, G:0.13, T:0.22
Consensus pattern (40 bp):
ACAACCTAACTTTCATAAAACTAGGCTCACTAAGGAGCTA
Found at i:98283828 original size:39 final size:40
Alignment explanation
Indices: 98283730--98283831 Score: 120
Period size: 39 Copynumber: 2.6 Consensus size: 40
98283720 AGCTCGCATA
* * *
98283730 AGGAACTTCTCTAATACACAAATTACCCTTAGCTCTCAGG
1 AGGAGCTTTTCTAATACACAACTTACCCTTAGCTCTCAGG
* *
98283770 -GGAGCTTTGTC-GATACACAACTTATCCTTAGCTCTC-GG
1 AGGAGCTTT-TCTAATACACAACTTACCCTTAGCTCTCAGG
*
98283808 AGGAGCTTTTCTAATGCACAACTT
1 AGGAGCTTTTCTAATACACAACTT
98283832 TTAGAATAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
38 4 0.08
39 46 0.88
40 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (40 bp):
AGGAGCTTTTCTAATACACAACTTACCCTTAGCTCTCAGG
Found at i:98288038 original size:40 final size:40
Alignment explanation
Indices: 98287983--98288200 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
98287973 TGGATGATAA
* * *
98287983 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
98288023 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
98288063 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
98288103 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
98288143 CCGGGCTATGTCCCGAAGGCATTCGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
98288183 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
98288201 TACTTGGCTT
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 148 0.90
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:98296159 original size:40 final size:40
Alignment explanation
Indices: 98296104--98296321 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
98296094 TGGATGATAA
* * *
98296104 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
98296144 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
98296184 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
98296224 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
98296264 CCGGGCTATGTCCCGAAGGCATTCGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
98296304 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
98296322 TACTTGGCTT
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 148 0.90
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:98301790 original size:42 final size:42
Alignment explanation
Indices: 98301731--98301814 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
98301721 AAGAAGAAGA
*
98301731 TAAAAAGTTATCCTAGAAATGGCGCGTCAATGCTTTGAAATC
1 TAAAAAGTTATCCTAGAAATGGCGCATCAATGCTTTGAAATC
*
98301773 TAAAAAGTTATCCTAGAAATGGTGCATCAATGCTTTGAAATC
1 TAAAAAGTTATCCTAGAAATGGCGCATCAATGCTTTGAAATC
98301815 ACTATTTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (42 bp):
TAAAAAGTTATCCTAGAAATGGCGCATCAATGCTTTGAAATC
Found at i:98310479 original size:54 final size:54
Alignment explanation
Indices: 98310415--98310524 Score: 220
Period size: 54 Copynumber: 2.0 Consensus size: 54
98310405 ATTCAAAGAC
98310415 TAAGTAGAGGAAAATTATCAAAATCATGACTTTATCTCTTTTTCTAAGGTTTAA
1 TAAGTAGAGGAAAATTATCAAAATCATGACTTTATCTCTTTTTCTAAGGTTTAA
98310469 TAAGTAGAGGAAAATTATCAAAATCATGACTTTATCTCTTTTTCTAAGGTTTAA
1 TAAGTAGAGGAAAATTATCAAAATCATGACTTTATCTCTTTTTCTAAGGTTTAA
98310523 TA
1 TA
98310525 TATCATTTGG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (54 bp):
TAAGTAGAGGAAAATTATCAAAATCATGACTTTATCTCTTTTTCTAAGGTTTAA
Found at i:98316619 original size:11 final size:11
Alignment explanation
Indices: 98316603--98316630 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
98316593 AATTTACATA
98316603 TTATAAAATTT
1 TTATAAAATTT
98316614 TTATAAAATTT
1 TTATAAAATTT
98316625 TTATAA
1 TTATAA
98316631 TATATTCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
TTATAAAATTT
Found at i:98318648 original size:13 final size:13
Alignment explanation
Indices: 98318630--98318655 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
98318620 ACTCACTTAA
98318630 GCATTAAATTTTT
1 GCATTAAATTTTT
98318643 GCATTAAATTTTT
1 GCATTAAATTTTT
98318656 AATAATATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (13 bp):
GCATTAAATTTTT
Found at i:98322114 original size:47 final size:46
Alignment explanation
Indices: 98322052--98322319 Score: 190
Period size: 47 Copynumber: 5.7 Consensus size: 46
98322042 ACTATAGCCT
*
98322052 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGATGAGTGCCA
1 GTGTAAGACCATGTCTGGGACAT-GCATCGGCCTA-AGATGAGTGCCA
* * *
98322100 GTGTAAGA-CGTGTCTGAGACATACATCGGCCTCAATGATG-GTAGCCA
1 GTGTAAGACCATGTCTGGGACATGCATCGGCCT-AA-GATGAGT-GCCA
* * * * * *
98322147 GTGTAAGA-CGTGTCTCGGACATGCATC-GACTAAGCTTCA-TGCTA
1 GTGTAAGACCATGTCTGGGACATGCATCGGCCTAAG-ATGAGTGCCA
* * * * * *
98322191 GTGTAAGA-TATGTCTGGGACATGCATCAGCTCTTATACACGAGAGCTA
1 GTGTAAGACCATGTCTGGGACATGCATCGGC-C-TA-AGATGAGTGCCA
* * *
98322239 ATGTAAGACCATGTCTGGGACATGACATCGGCCT-CGATAAAGATAGCCA
1 GTGTAAGACCATGTCTGGGACATG-CATCGGCCTAAGAT-GAG-T-GCCA
98322288 GTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GTGTAAGACCATGTCTGGGACAT-GCATCGGC
98322320 AACTTAACCC
Statistics
Matches: 174, Mismatches: 30, Indels: 31
0.74 0.13 0.13
Matches are distributed among these distances:
44 28 0.16
45 5 0.03
46 16 0.09
47 50 0.29
48 21 0.12
49 47 0.27
50 7 0.04
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (46 bp):
GTGTAAGACCATGTCTGGGACATGCATCGGCCTAAGATGAGTGCCA
Found at i:98322173 original size:93 final size:93
Alignment explanation
Indices: 98321954--98322174 Score: 261
Period size: 93 Copynumber: 2.4 Consensus size: 93
98321944 GTTATGTGAG
* * *
98321954 AGCCAGTGTAAGACCATGTCTAGGACATGGAATCGGCATTGAGATGAGGGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATAGAGATGAGGGCCAGTGTAAGACGTG
*
98322019 TCTAGACATGAATCAGCCACATTACTAT
66 TCTAGACATGAATCAGCCACATGACTAT
* * * *
98322047 AGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGATGAGTGCCAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATAGAGATGAGGGCCAGTGTAAGACGTG
* * *
98322112 TCTGAGACAT-ACATCGGCCTCAATGA-TGGT
66 TCT-AGACATGA-ATCAGCCAC-ATGACT-AT
* *
98322142 AGCCAGTGTAAGA-CGTGTCTCGGACAT-GCATCG
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
98322175 ACTAAGCTTC
Statistics
Matches: 110, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
93 68 0.62
94 26 0.24
95 16 0.15
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (93 bp):
AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATAGAGATGAGGGCCAGTGTAAGACGTG
TCTAGACATGAATCAGCCACATGACTAT
Found at i:98322259 original size:49 final size:48
Alignment explanation
Indices: 98322187--98322316 Score: 147
Period size: 49 Copynumber: 2.7 Consensus size: 48
98322177 TAAGCTTCAT
* * *
98322187 GCTAGTGTAAGA-TATGTCTGGGACATGCATCAG-CTCTTATACACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCAGCCTC-GATA-AAGAGA
* * *
98322235 GCTAATGTAAGACCATGTCTGGGACATGACATCGGCCTCGATAAAGATA
1 GCTAGTGTAAGACCATGTCTGGGACATG-CATCAGCCTCGATAAAGAGA
*
98322284 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATC
98322317 GGCAACTTAA
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
48 11 0.16
49 47 0.67
50 9 0.13
51 3 0.04
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCAGCCTCGATAAAGAGA
Found at i:98325225 original size:14 final size:15
Alignment explanation
Indices: 98325208--98325238 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
98325198 AAGTGACTTG
98325208 GATAA-ATCGTCTAT
1 GATAATATCGTCTAT
98325222 GATAATATCGTCTAT
1 GATAATATCGTCTAT
98325237 GA
1 GA
98325239 ACGCTGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (15 bp):
GATAATATCGTCTAT
Found at i:98329637 original size:94 final size:93
Alignment explanation
Indices: 98329425--98329692 Score: 272
Period size: 94 Copynumber: 2.9 Consensus size: 93
98329415 GTTATGTGAG
* * *
98329425 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGGGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACAAGGCATCGG-ATAGAGATGAGTGCTAGTGTAAGACGTG
* * *
98329490 TCTAGGACATGCATCAGCCACATTACTAT
65 TCTGGGACATGCATCAGCCACAATAATAT
* * * * *
98329519 AGCCTGTGTAAAACCATGTTTGGGACAAGGCATCGGTGTAGAGATGAGTGCCAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACAAGGCATCGG-ATAGAGATGAGTGCTAGTGTAAGACGTG
* * *
98329584 TCTGGGACATGCATCGGCCTCAATAATGGT
65 TCTGGGACATGCATCAGCCACAATAAT-AT
* * * * * * ** * *
98329614 AGCCAGTGTAGGA-CGTGGCTGGGAC-ATGCATCGGCTA-AGCTTCGTGCTAGTGTAAGACATGA
1 AGCCAGTGTAAGACCATGTCTGGGACAAGGCATCGGATAGAGATGAGTGCTAGTGTAAGACGTGT
98329676 CTGGGACATGCATCAGC
66 CTGGGACATGCATCAGC
98329693 TCTTATACAC
Statistics
Matches: 143, Mismatches: 30, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
91 35 0.24
92 2 0.01
93 8 0.06
94 87 0.61
95 11 0.08
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (93 bp):
AGCCAGTGTAAGACCATGTCTGGGACAAGGCATCGGATAGAGATGAGTGCTAGTGTAAGACGTGT
CTGGGACATGCATCAGCCACAATAATAT
Found at i:98329681 original size:44 final size:46
Alignment explanation
Indices: 98329566--98329689 Score: 144
Period size: 47 Copynumber: 2.7 Consensus size: 46
98329556 GTAGAGATGA
* * *
98329566 GTGCCAGTGTAAGACGTGTCTGGGACATGCATCGGCCTCAATAATG
1 GTGCCAGTGTAAGACGTGACTGGGACATGCATCGGCCTCAAGAATC
* * **
98329612 GTAGCCAGTGTAGGACGTGGCTGGGACATGCATCGG-CT-AAGCTTC
1 GT-GCCAGTGTAAGACGTGACTGGGACATGCATCGGCCTCAAGAATC
* *
98329657 GTGCTAGTGTAAGACATGACTGGGACATGCATC
1 GTGCCAGTGTAAGACGTGACTGGGACATGCATC
98329690 AGCTCTTATA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
44 27 0.40
45 5 0.07
46 4 0.06
47 31 0.46
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (46 bp):
GTGCCAGTGTAAGACGTGACTGGGACATGCATCGGCCTCAAGAATC
Found at i:98333834 original size:94 final size:92
Alignment explanation
Indices: 98333635--98333913 Score: 287
Period size: 94 Copynumber: 2.9 Consensus size: 92
98333625 TTGGGTCATT
* * * ** * *
98333635 TGTGTGAGCTAGTGTAAGACATGCCTGGGACATGCATCGACCATATTATG-GGAGCCAGTGTAAG
1 TGTGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCG-GC-TACGA-GATGTGCCAGTGTAAG
**
98333699 ACCATGTCTGGGACATGGCATTAGCATTGA
63 ACCATGTCTGGGACATGGCATCGGCATTGA
* * *
98333729 -GACGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTCAGTGTAAGAC
1 TG-TGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCCAGTGTAAGAC
98333793 CATGTCTGGGACATGGCATCGGCACAGTT-A
65 CATGTCTGGGACATGGCATCGG--CA-TTGA
*
98333823 TGTGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTCT-CGAAGATGATAGCCAATGT
1 TGTGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTACG-AGATG-T-GCCAGTGT
*
98333887 AAGACCATGTTTGGGACATGGCATCGG
60 AAGACCATGTCTGGGACATGGCATCGG
98333914 TACTTTACCT
Statistics
Matches: 156, Mismatches: 17, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
91 1 0.01
92 36 0.23
93 2 0.01
94 51 0.33
95 17 0.11
96 9 0.06
97 7 0.04
98 1 0.01
99 32 0.21
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.24
Consensus pattern (92 bp):
TGTGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCCAGTGTAAGACC
ATGTCTGGGACATGGCATCGGCATTGA
Found at i:98333914 original size:49 final size:48
Alignment explanation
Indices: 98333687--98333913 Score: 227
Period size: 49 Copynumber: 4.8 Consensus size: 48
98333677 ATATTATGGG
** * *
98333687 AGCCAGTGTAAGACCATGTCTGGGACATGGCATTAGCATTG-AGACGAGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TCGAAGATGA-T
*
98333736 -GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACG-AGATG-T
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-CGAAGATGAT
* * * *
98333780 -GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGTTATG-TGAG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTC-G--AAGATGAT
*
98333829 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTCTCGAAGATGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGAAGATGAT
* *
98333878 AGCCAATGTAAGACCATGTTTGGGACATGGCATCGG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
98333914 TACTTTACCT
Statistics
Matches: 149, Mismatches: 18, Indels: 22
0.79 0.10 0.12
Matches are distributed among these distances:
44 11 0.07
45 16 0.11
46 20 0.13
47 14 0.09
48 15 0.10
49 37 0.25
50 34 0.23
51 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAAGATGAT
Found at i:98336561 original size:27 final size:27
Alignment explanation
Indices: 98336296--98336587 Score: 207
Period size: 27 Copynumber: 10.8 Consensus size: 27
98336286 CTTGGTTTAC
* ** *
98336296 AAAATTACCAAAATACCCTCAATTAGT
1 AAAATTACTAAAATACCCTTGATTTGT
* *
98336323 AAAATTACCAAAATATCCCTAG-TTTGT
1 AAAATTACTAAAATA-CCCTTGATTTGT
* *
98336350 AAAATTACCAAAATACCATTGATTTGT
1 AAAATTACTAAAATACCCTTGATTTGT
* **
98336377 GAAATTA-TCAAAATACCCTTGACCTGT
1 AAAATTACT-AAAATACCCTTGATTTGT
* * *
98336404 AAAATTACCAAAATACCCTCGACTTGT
1 AAAATTACTAAAATACCCTTGATTTGT
* * *
98336431 GAAATTACTGAAATA-CCTTCAATTTGT
1 AAAATTACTAAAATACCCTT-GATTTGT
* * **
98336458 AAAATTACCAAAATACCCTTAATTTAC
1 AAAATTACTAAAATACCCTTGATTTGT
**
98336485 AAAATTA-TAGAAATACCCTTGACTTTCA
1 AAAATTACTA-AAATACCCTTGA-TTTGT
* * *
98336513 AAAATTA-TAGAAATACCATTGGTTTGC
1 AAAATTACTA-AAATACCCTTGATTTGT
* *
98336540 AAAATTACTGAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCTTGATTTGT
* * * *
98336567 AGATTTACCAAAACACCCTTG
1 AAAATTACTAAAATACCCTTG
98336588 TAGGGTGAAA
Statistics
Matches: 215, Mismatches: 41, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
26 8 0.04
27 175 0.81
28 32 0.15
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTTGATTTGT
Found at i:98336906 original size:40 final size:41
Alignment explanation
Indices: 98336825--98336946 Score: 183
Period size: 41 Copynumber: 3.0 Consensus size: 41
98336815 GGAGGAAGAA
* *
98336825 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCAACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCATGGATCCACCG
* *
98336866 ATTGAGGATCACATGATTGCTTG-CGACCATGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCATGGATCCACCG
* *
98336906 ATTAAGGATTGCATGGTTGCTTGACGACCATGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCATGGATCCACCG
98336947 GTGGCTTTTA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 34 0.47
41 38 0.53
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCATGGATCCACCG
Found at i:98337138 original size:22 final size:22
Alignment explanation
Indices: 98337086--98337150 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
98337076 GCCAATTATT
* * *
98337086 CTGATTATGGCTTTGCGCTAAC
1 CTGATTATGGCTCTGTGCCAAC
*
98337108 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
98337130 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
98337151 ACGTATTTAC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:98338892 original size:44 final size:45
Alignment explanation
Indices: 98338765--98338894 Score: 185
Period size: 44 Copynumber: 2.9 Consensus size: 45
98338755 AGGACTTGTC
* * *
98338765 GCTTCAATCTACTCCACTACAACTTCATGGAGATAAGA-TC-TGTA
1 GCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTCATG-A
*
98338809 GCTTTAATCTACTCCACTGTAACTTCAGGGAGATAAGATTCATG-
1 GCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTCATGA
*
98338853 GCTTTAGTCTACTCCACTGCAACTTCAGGGAGATAAGATTCA
1 GCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTCA
98338895 CCATGATAAC
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
44 74 0.95
45 2 0.03
46 2 0.03
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (45 bp):
GCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTCATGA
Found at i:98352772 original size:4 final size:4
Alignment explanation
Indices: 98352765--98352800 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
98352755 TTTAGAAAGA
* *
98352765 AATT AATT AACT AACT AATT AATT AATT AATT AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT AATT
98352801 TCAATATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (4 bp):
AATT
Found at i:98353534 original size:27 final size:27
Alignment explanation
Indices: 98353504--98353577 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
98353494 ATAGGTGGTG
*
98353504 CCTATCTGGTAGGCGCCACTGGTGACT
1 CCTATCTGATAGGCGCCACTGGTGACT
* **
98353531 CCTATCTAATAGGCATCACTGGTGACT
1 CCTATCTGATAGGCGCCACTGGTGACT
* *
98353558 TCTATCTGATAGGCGGCACT
1 CCTATCTGATAGGCGCCACT
98353578 AATGTTTAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.20, C:0.27, G:0.24, T:0.28
Consensus pattern (27 bp):
CCTATCTGATAGGCGCCACTGGTGACT
Found at i:98353766 original size:19 final size:19
Alignment explanation
Indices: 98353744--98353798 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 19
98353734 AATTGAGAGT
98353744 TTTGTTAGTAATTTTGTTA
1 TTTGTTAGTAATTTTGTTA
** *
98353763 TTTGAAAGTTATTTTGTTA
1 TTTGTTAGTAATTTTGTTA
* *
98353782 --GGTTATTAATTTTGTTA
1 TTTGTTAGTAATTTTGTTA
98353799 GCTTCTAAAT
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
17 12 0.43
19 16 0.57
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (19 bp):
TTTGTTAGTAATTTTGTTA
Found at i:98357374 original size:75 final size:75
Alignment explanation
Indices: 98357293--98357446 Score: 227
Period size: 75 Copynumber: 2.1 Consensus size: 75
98357283 TTATATAAAT
* * * * * **
98357293 AATACAAATTTTACTATTTAAATTACAAAAAACCCCTAAAATTAATAACTAAAATGGCGAAAAAG
1 AATACAAAATTGACTATTTAAATTACAAAAAAACCCTAAAACTAATAACTAAAATCGAAAAAAAG
98357358 TCATTACATA
66 TCATTACATA
*
98357368 AATACAAAATTGATTATTTAAATTACAAAAAAACCCTAAAACTAATAACTAAAATCGAAAAAAAG
1 AATACAAAATTGACTATTTAAATTACAAAAAAACCCTAAAACTAATAACTAAAATCGAAAAAAAG
*
98357433 TCATTATATA
66 TCATTACATA
98357443 AATA
1 AATA
98357447 TAAAGTTGTT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.55, C:0.13, G:0.05, T:0.27
Consensus pattern (75 bp):
AATACAAAATTGACTATTTAAATTACAAAAAAACCCTAAAACTAATAACTAAAATCGAAAAAAAG
TCATTACATA
Found at i:98357592 original size:33 final size:33
Alignment explanation
Indices: 98357550--98357757 Score: 174
Period size: 33 Copynumber: 6.3 Consensus size: 33
98357540 TGGTCCTAGG
98357550 CGGTGGATACTGGCCGGGAGGAGTAGAGTACGA
1 CGGTGGATACTGGCCGGGAGGAGTAGAGTACGA
* * * * * *
98357583 CGGTGGATACAGACCGAGAGGAGT-GAAATATGG
1 CGGTGGATACTGGCCGGGAGGAGTAG-AGTACGA
* *
98357616 CGGTGGATA-TGGGCCTGGAGGAGTAGAGTATGA
1 CGGTGGATACT-GGCCGGGAGGAGTAGAGTACGA
* *
98357649 CGGTGGATACGGGCCTGGAGGAGTAGAGTACGA
1 CGGTGGATACTGGCCGGGAGGAGTAGAGTACGA
* * * * * * *
98357682 CGATAGATACAGTCCGAGAGGAGTGGAGTA-TA
1 CGGTGGATACTGGCCGGGAGGAGTAGAGTACGA
*
98357714 GCAGTGGATA-TGGGCCGGGAGGAGTAGAGTACTGA
1 -CGGTGGATACT-GGCCGGGAGGAGTAGAGTAC-GA
98357749 -GGTGGATAC
1 CGGTGGATAC
98357758 GAGTCGAAAT
Statistics
Matches: 135, Mismatches: 31, Indels: 17
0.74 0.17 0.09
Matches are distributed among these distances:
32 2 0.01
33 131 0.97
34 1 0.01
35 1 0.01
ACGTcount: A:0.27, C:0.12, G:0.43, T:0.17
Consensus pattern (33 bp):
CGGTGGATACTGGCCGGGAGGAGTAGAGTACGA
Found at i:98357721 original size:99 final size:100
Alignment explanation
Indices: 98357550--98357758 Score: 314
Period size: 99 Copynumber: 2.1 Consensus size: 100
98357540 TGGTCCTAGG
* * * *
98357550 CGGTGGATACTGGCCGGGAGGAGTAGAGTACGACGGTGGATACAGACCGAGAGGAGTGAAATATG
1 CGGTGGATACGGGCCGGGAGGAGTAGAGTACGACGATAGATACAGACCGAGAGGAGTGAAATATA
* *
98357615 GCGGTGGATATGGGCCTGGAGGAGTAGAGTA-TGA
66 GCAGTGGATATGGGCCGGGAGGAGTAGAGTACTGA
* * * *
98357649 CGGTGGATACGGGCCTGGAGGAGTAGAGTACGACGATAGATACAGTCCGAGAGGAGTGGAGTATA
1 CGGTGGATACGGGCCGGGAGGAGTAGAGTACGACGATAGATACAGACCGAGAGGAGTGAAATATA
98357714 GCAGTGGATATGGGCCGGGAGGAGTAGAGTACTGA
66 GCAGTGGATATGGGCCGGGAGGAGTAGAGTACTGA
98357749 -GGTGGATACG
1 CGGTGGATACG
98357759 AGTCGAAATG
Statistics
Matches: 99, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
99 96 0.97
100 3 0.03
ACGTcount: A:0.27, C:0.12, G:0.43, T:0.17
Consensus pattern (100 bp):
CGGTGGATACGGGCCGGGAGGAGTAGAGTACGACGATAGATACAGACCGAGAGGAGTGAAATATA
GCAGTGGATATGGGCCGGGAGGAGTAGAGTACTGA
Found at i:98357777 original size:66 final size:66
Alignment explanation
Indices: 98357634--98357777 Score: 150
Period size: 66 Copynumber: 2.2 Consensus size: 66
98357624 ATGGGCCTGG
* * *
98357634 AGGAGTAGAGTAT-GACGGTGGATACGGGCCTGGAGGAGTAGAGTACGACGATAGATACAGTCCG
1 AGGACTAGAGTATAG-CAGTGGATACGGGCCGGGAGGAGTAGAGTACGACGATAGATACAGTCCG
*
98357698 AG
65 AA
* * * * *
98357700 AGGAGTGGAGTATAGCAGTGGATATGGGCCGGGAGGAGTAGAGTACTGA-GGTGGATACGAGT-C
1 AGGACTAGAGTATAGCAGTGGATACGGGCCGGGAGGAGTAGAGTAC-GACGATAGATAC-AGTCC
98357763 GAA
64 GAA
*
98357766 ATGACTAGAGTA
1 AGGACTAGAGTA
98357778 CTGAGATGGT
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
66 59 0.91
67 6 0.09
ACGTcount: A:0.31, C:0.11, G:0.40, T:0.18
Consensus pattern (66 bp):
AGGACTAGAGTATAGCAGTGGATACGGGCCGGGAGGAGTAGAGTACGACGATAGATACAGTCCGA
A
Found at i:98363034 original size:14 final size:16
Alignment explanation
Indices: 98363000--98363038 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
98362990 AAAATCAAAT
*
98363000 AAAATTACATTATATA
1 AAAATCACATTATATA
98363016 AAAATCACATTA-A-A
1 AAAATCACATTATATA
98363030 AAAATCACA
1 AAAATCACA
98363039 AAACACTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.45
15 1 0.05
16 11 0.50
ACGTcount: A:0.62, C:0.13, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATCACATTATATA
Found at i:98366181 original size:11 final size:11
Alignment explanation
Indices: 98366165--98366193 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
98366155 CATAGGGTTG
98366165 AGTAGTGGACC
1 AGTAGTGGACC
98366176 AGTAGTGGACC
1 AGTAGTGGACC
98366187 AGTAGTG
1 AGTAGTG
98366194 ACCTTGGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.28, C:0.14, G:0.38, T:0.21
Consensus pattern (11 bp):
AGTAGTGGACC
Found at i:98368023 original size:103 final size:98
Alignment explanation
Indices: 98367913--98368105 Score: 246
Period size: 103 Copynumber: 1.9 Consensus size: 98
98367903 CAAAATTATT
* *
98367913 ATTTTTTT-AAAG-TACATTACTAAAAAATTACAAAACCCTAAACTAAACACTAACAATTTATAA
1 ATTTTTTTAAAAGATACATTACTAAAAAATAACAAAA--C---ACAAAACACTAACAATTTATAA
* *
98367976 TCTAATCTCATAAATTACTAACAAAATAAATAACTATAAC
61 CCTAA--TCATAAACTACTAACAAAATAAATAACTATAAC
98368016 ATTTTTTTAAAAGAAATTACATTACTAAAAAATAACAAAACACAAAACACTAACAATTTATAACC
1 ATTTTTTTAAAAG--A-TACATTACTAAAAAATAACAAAACACAAAACACTAACAATTTATAACC
98368081 TAATCATAAACTACTAACAAAATAA
63 TAATCATAAACTACTAACAAAATAA
98368106 CTATAAAATT
Statistics
Matches: 81, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
101 21 0.26
103 33 0.41
104 4 0.05
106 1 0.01
108 22 0.27
ACGTcount: A:0.54, C:0.16, G:0.01, T:0.29
Consensus pattern (98 bp):
ATTTTTTTAAAAGATACATTACTAAAAAATAACAAAACACAAAACACTAACAATTTATAACCTAA
TCATAAACTACTAACAAAATAAATAACTATAAC
Found at i:98368141 original size:97 final size:98
Alignment explanation
Indices: 98367887--98368157 Score: 285
Period size: 97 Copynumber: 2.7 Consensus size: 98
98367877 TACTCATGAC
* * * *
98367887 ACTAACAAAATAACTACAAAATTATTATTTTTTTAAAGTACATTACTAAAAAATTACAAAACCCT
1 ACTAACAAAATAACTATAAAATTATTA-TTATTTAAATTACATTACTAAAAAATAACAAAA--C-
* * *
98367952 AAACTAAACACTAACAATTTATAATCTAATCTCATAAATT
62 --ACAAAACACTAACAATTTATAACCTAA-CTCATAAACT
* * ***
98367992 ACTAACAAAATAAATAACTATAACATT-TTTTTAAAAGAAATTACATTACTAAAAAATAACAAAA
1 ACTAAC---A-AAATAACTATAAAATTATTATT-ATTTAAATTACATTACTAAAAAATAACAAAA
98368056 CACAAAACACTAACAATTTATAACCTAA-TCATAAACT
61 CACAAAACACTAACAATTTATAACCTAACTCATAAACT
* * *
98368093 ACTAACAAAATAACTATAAAATTATTATTATTTAATTTACATTACTAAAAACTCACAAAACACAA
1 ACTAACAAAATAACTATAAAATTATTATTATTTAAATTACATTACTAAAAAATAACAAAACACAA
98368158 CAATTTATAA
Statistics
Matches: 140, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
97 45 0.32
98 5 0.04
101 14 0.10
103 25 0.18
105 6 0.04
106 1 0.01
107 2 0.01
108 28 0.20
109 14 0.10
ACGTcount: A:0.54, C:0.16, G:0.01, T:0.30
Consensus pattern (98 bp):
ACTAACAAAATAACTATAAAATTATTATTATTTAAATTACATTACTAAAAAATAACAAAACACAA
AACACTAACAATTTATAACCTAACTCATAAACT
Found at i:98368473 original size:3 final size:3
Alignment explanation
Indices: 98368467--98368499 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
98368457 ATTACCTTTT
98368467 TTC TTC TTC TTC TTC TTC TTC TTC TT- TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
98368500 CCTTTCTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:98373251 original size:12 final size:12
Alignment explanation
Indices: 98373222--98373256 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
98373212 GAATTAGTCC
*
98373222 TATTATTATTAT
1 TATTACTATTAT
98373234 TATTACTATTAT
1 TATTACTATTAT
98373246 TATTACCTATT
1 TATTA-CTATT
98373257 TATTTATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 16 0.76
13 5 0.24
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTACTATTAT
Found at i:98373767 original size:21 final size:20
Alignment explanation
Indices: 98373729--98373767 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
98373719 CTTTTCATGC
*
98373729 TTTATTGCATTTGCTATTTA
1 TTTATTGCATTTGATATTTA
*
98373749 TTTATTTCATTTTGATATT
1 TTTATTGCA-TTTGATATT
98373768 ACTTTGAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.21, C:0.08, G:0.08, T:0.64
Consensus pattern (20 bp):
TTTATTGCATTTGATATTTA
Found at i:98374361 original size:83 final size:84
Alignment explanation
Indices: 98374264--98374431 Score: 320
Period size: 84 Copynumber: 2.0 Consensus size: 84
98374254 TCCTTTTTCC
*
98374264 AAAATTTTCATTTTAATACAAGGATCGTA-TTTTAGTTCTTCCAAGTTCTCAATTTTCGACATCA
1 AAAATTTGCATTTTAATACAAGGATCGTATTTTTAGTTCTTCCAAGTTCTCAATTTTCGACATCA
98374328 AGACATTAGATAATCAACT
66 AGACATTAGATAATCAACT
98374347 AAAATTTGCATTTTAATACAAGGATCGTATTTTTAGTTCTTCCAAGTTCTCAATTTTCGACATCA
1 AAAATTTGCATTTTAATACAAGGATCGTATTTTTAGTTCTTCCAAGTTCTCAATTTTCGACATCA
98374412 AGACATTAGATAATCAACT
66 AGACATTAGATAATCAACT
98374431 A
1 A
98374432 GGTACCAATT
Statistics
Matches: 83, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
83 28 0.34
84 55 0.66
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (84 bp):
AAAATTTGCATTTTAATACAAGGATCGTATTTTTAGTTCTTCCAAGTTCTCAATTTTCGACATCA
AGACATTAGATAATCAACT
Found at i:98393054 original size:1 final size:1
Alignment explanation
Indices: 98393048--98393112 Score: 58
Period size: 1 Copynumber: 65.0 Consensus size: 1
98393038 TTTGCTTCCT
* * * * * * * *
98393048 AAAAAAAACAAAACAAAAAAAAACAACAAAAAAAACAAAACAAAAAAAAACAAAAAACAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
98393113 CTTTGGAGAG
Statistics
Matches: 48, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:98393067 original size:13 final size:13
Alignment explanation
Indices: 98393049--98393095 Score: 69
Period size: 13 Copynumber: 3.5 Consensus size: 13
98393039 TTGCTTCCTA
98393049 AAAAAAACAAAAC
1 AAAAAAACAAAAC
98393062 AAAAAAA-AACAAC
1 AAAAAAACAA-AAC
98393075 AAAAAAAACAAAAC
1 -AAAAAAACAAAAC
98393089 AAAAAAA
1 AAAAAAA
98393096 AACAAAAAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
12 2 0.06
13 17 0.55
14 10 0.32
15 2 0.06
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAACAAAAC
Found at i:98393068 original size:15 final size:15
Alignment explanation
Indices: 98393048--98393113 Score: 95
Period size: 15 Copynumber: 4.6 Consensus size: 15
98393038 TTTGCTTCCT
98393048 AAAAAAAACAAAACA
1 AAAAAAAACAAAACA
98393063 AAAAAAAAC--AAC-
1 AAAAAAAACAAAACA
98393075 AAAAAAAACAAAACA
1 AAAAAAAACAAAACA
98393090 AAAAAAAACAAAA-A
1 AAAAAAAACAAAACA
98393104 ACAAAAAAAC
1 A-AAAAAAAC
98393114 TTTGGAGAGG
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
12 9 0.19
13 3 0.06
14 5 0.11
15 30 0.64
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAAACAAAACA
Found at i:98393070 original size:10 final size:10
Alignment explanation
Indices: 98393051--98393112 Score: 70
Period size: 11 Copynumber: 5.7 Consensus size: 10
98393041 GCTTCCTAAA
98393051 AAAAACAAAAC
1 AAAAA-AAAAC
98393062 AAAAAAAAAC
1 AAAAAAAAAC
98393072 AACAAAAAAAAC
1 -A-AAAAAAAAC
*
98393084 AAAACAAAAAA
1 AAAA-AAAAAC
98393095 AAACAAAAAAC
1 AAA-AAAAAAC
98393106 AAAAAAA
1 AAAAAAA
98393113 CTTTGGAGAG
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
10 12 0.27
11 23 0.51
12 10 0.22
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Done.