Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 29 of 373
Found at i:8220642 original size:6 final size:6
Alignment explanation
Indices: 8220631--8220655 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8220621 AATAATTTAC
8220631 TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA T
8220656 TTAATTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:8220735 original size:42 final size:42
Alignment explanation
Indices: 8220676--8220761 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
8220666 AATAATAAAA
8220676 ATCCAGATCAATCGATTTGTACTACTTCGTAAGTTAATTGAT
1 ATCCAGATCAATCGATTTGTACTACTTCGTAAGTTAATTGAT
8220718 ATCCAGATCAATCGATTTGTACTACTTCGTAAGTTAATTGAT
1 ATCCAGATCAATCGATTTGTACTACTTCGTAAGTTAATTGAT
8220760 AT
1 AT
8220762 TTTATCACTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.38
Consensus pattern (42 bp):
ATCCAGATCAATCGATTTGTACTACTTCGTAAGTTAATTGAT
Found at i:8246363 original size:7 final size:6
Alignment explanation
Indices: 8246346--8246379 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
8246336 AATAAAATTG
*
8246346 AAATGA AAATAAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAAT-AA AAATAA AAATAA AAATAA AAA
8246380 GATAGGAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
6 21 0.81
7 5 0.19
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:8246368 original size:19 final size:19
Alignment explanation
Indices: 8246326--8246379 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
8246316 TATGTCTTTC
*
8246326 AAAA-GAAAATAATAAAATT
1 AAAATGAAAATAA-AAAATA
*
8246345 GAAATGAAAATAAAAAATA
1 AAAATGAAAATAAAAAATA
*
8246364 AAAATAAAAATAAAAA
1 AAAATGAAAATAAAAA
8246380 GATAGGAGGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 22 0.73
20 8 0.27
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (19 bp):
AAAATGAAAATAAAAAATA
Found at i:8248966 original size:22 final size:22
Alignment explanation
Indices: 8248941--8248985 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
8248931 ACTGTACTGA
8248941 ATGGAAAAATACTGAGTACCGT
1 ATGGAAAAATACTGAGTACCGT
8248963 ATGGAAAAATACTGAGTACCGT
1 ATGGAAAAATACTGAGTACCGT
8248985 A
1 A
8248986 AGAGGGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.13, G:0.22, T:0.22
Consensus pattern (22 bp):
ATGGAAAAATACTGAGTACCGT
Found at i:8251721 original size:46 final size:46
Alignment explanation
Indices: 8251669--8251944 Score: 365
Period size: 46 Copynumber: 6.0 Consensus size: 46
8251659 GTGCTCTCTA
* *
8251669 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
* *
8251715 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
* * *
8251761 ATATGAAATGAATAAGATCATGGTTGAAAGATACCATGACAACATG
1 ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
*** * * * * *
8251807 ACGGGAGATGAATAAGACCATGGTTGAAAGTTACCATGGCAGCGTG
1 ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
*
8251853 ACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
1 ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
* * *
8251899 ATA-GAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCATCATG
1 ATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
8251945 TCAAAGATAA
Statistics
Matches: 204, Mismatches: 25, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 1 0.00
46 203 1.00
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
ATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
Found at i:8251929 original size:138 final size:138
Alignment explanation
Indices: 8251681--8251936 Score: 406
Period size: 138 Copynumber: 1.9 Consensus size: 138
8251671 ATGAAATGTG
* *
8251681 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAGTAAGACCATGGTTGAAAGA
* * * *
8251746 TACCATGGCAACCTGATATGAAATGAATAAGATCATGGTTGAAAGATACCATGACAACATGACGG
66 TACCATGGCAACATGATATGAAATGAATAAGACCATAGTTGAAAGACACCATGACAACATGACGG
8251811 GAGATGAA
131 GAGATGAA
* * *
8251819 TAAGACCATGGTTGAAAGTTACCATGGCAGCGTGACATGAAATGAGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAGTAAGACCATGGTTGAAAGA
*
8251884 TACCATGGCAACATGATA-GAAAATGAGTAAGACCATAGTTGAAAGACACCATG
66 TACCATGGCAACATGATATG-AAATGAATAAGACCATAGTTGAAAGACACCATG
8251937 GCATCATGTC
Statistics
Matches: 107, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
137 1 0.01
138 106 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAGTAAGACCATGGTTGAAAGA
TACCATGGCAACATGATATGAAATGAATAAGACCATAGTTGAAAGACACCATGACAACATGACGG
GAGATGAA
Found at i:8252246 original size:16 final size:17
Alignment explanation
Indices: 8252225--8252257 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8252215 ATGATGGTGC
8252225 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
8252241 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
8252258 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:8255663 original size:23 final size:23
Alignment explanation
Indices: 8255619--8255663 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
8255609 ACCAATTCAA
*
8255619 CATATTTTAAAGATAAATTCATG
1 CATATTTTAAAGATAAAGTCATG
*
8255642 CATA-TTTATAAGATAACGTCAT
1 CATATTTTA-AAGATAAAGTCAT
8255664 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTAAAGATAAAGTCATG
Found at i:8257677 original size:93 final size:93
Alignment explanation
Indices: 8257565--8257736 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
8257555 CGCCCATAAG
*
8257565 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
8257629 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
**
8257658 CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
8257723 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
8257737 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 3 0.04
93 72 0.96
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:8257752 original size:46 final size:46
Alignment explanation
Indices: 8257558--8257738 Score: 190
Period size: 46 Copynumber: 3.9 Consensus size: 46
8257548 TGTAACCCGC
* * *
8257558 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACGCTCGCAT
* *
8257604 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* * * **
8257654 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
8257697 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
8257739 AATCATCCTA
Statistics
Matches: 109, Mismatches: 18, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 4 0.04
46 65 0.60
47 30 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:8280889 original size:52 final size:52
Alignment explanation
Indices: 8280822--8281025 Score: 230
Period size: 52 Copynumber: 3.9 Consensus size: 52
8280812 AACATGTGAC
* *
8280822 ATGTGCTCCTATATAAGACCATAGCTAGACTATGGCATCGGTGTGATGAGAT
1 ATGTGCTTCTATATAAGACCATAGCTAGACTATGGCATCAGTGTGATGAGAT
* * *
8280874 ATGTGCTTCTATATAAGACTATAGCTAGACTATGGCATCGGTGTGTTGAGAT
1 ATGTGCTTCTATATAAGACCATAGCTAGACTATGGCATCAGTGTGATGAGAT
* * * * * * **
8280926 ATGTGCTTTTGTATAAGACCATAGTTGGGCTATGGCATCAGTGAGATTTGATT
1 ATGTGCTTCTATATAAGACCATAGCTAGACTATGGCATCAGTGTGATGAGA-T
* * * *
8280979 ATGTGCTTCTGTGTAAGACCACATCTAGGA-TATGGCATCAGTGTGAT
1 ATGTGCTTCTATATAAGACCATAGCTA-GACTATGGCATCAGTGTGAT
8281026 TTGTGATCCT
Statistics
Matches: 128, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
52 89 0.70
53 38 0.30
54 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.33
Consensus pattern (52 bp):
ATGTGCTTCTATATAAGACCATAGCTAGACTATGGCATCAGTGTGATGAGAT
Found at i:8281023 original size:105 final size:104
Alignment explanation
Indices: 8280833--8281023 Score: 240
Period size: 105 Copynumber: 1.8 Consensus size: 104
8280823 TGTGCTCCTA
* * * *
8280833 TATAAGACCATAGCTAGACTATGGCATCGGTGTGATGAGATATGTGCTTCTATATAAGACTATAG
1 TATAAGACCATAGCTAGACTATGGCATCAGTGAGATGAGATATGTGCTTCTATATAAGACCACAG
*
8280898 CTAGACTATGGCATCGGTGTGTTGAGATATGTGCTTTTG
66 CTAGACTATGGCATCAGTGTGTTGAGATATGTGCTTTTG
* * * ** * *
8280937 TATAAGACCATAGTTGGGCTATGGCATCAGTGAGATTTGATTATGTGCTTCTGTGTAAGACCACA
1 TATAAGACCATAGCTAGACTATGGCATCAGTGAGATGAGA-TATGTGCTTCTATATAAGACCACA
*
8281002 TCTAGGA-TATGGCATCAGTGTG
65 GCTA-GACTATGGCATCAGTGTG
8281024 ATTTGTGATC
Statistics
Matches: 72, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
104 33 0.46
105 37 0.51
106 2 0.03
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (104 bp):
TATAAGACCATAGCTAGACTATGGCATCAGTGAGATGAGATATGTGCTTCTATATAAGACCACAG
CTAGACTATGGCATCAGTGTGTTGAGATATGTGCTTTTG
Found at i:8282823 original size:26 final size:26
Alignment explanation
Indices: 8282794--8282901 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
8282784 TGGTACAAAT
8282794 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
8282820 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8282846 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8282872 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8282898 TGAT
1 TGAT
8282902 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:8285750 original size:17 final size:16
Alignment explanation
Indices: 8285712--8285750 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
8285702 TCTTAACTAC
*
8285712 TTTCTTTCCCTTTTCT
1 TTTCTTTCCCTTTTAT
*
8285728 TCTCTTTCACCTTTTAT
1 TTTCTTTC-CCTTTTAT
8285745 TTTCTT
1 TTTCTT
8285751 GCTTCCAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.05, C:0.28, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTCTTTCCCTTTTAT
Found at i:8286668 original size:32 final size:32
Alignment explanation
Indices: 8286627--8286696 Score: 140
Period size: 32 Copynumber: 2.2 Consensus size: 32
8286617 ACTATTTATC
8286627 TTAATTTATCATTATTAGTACATCACATTTCT
1 TTAATTTATCATTATTAGTACATCACATTTCT
8286659 TTAATTTATCATTATTAGTACATCACATTTCT
1 TTAATTTATCATTATTAGTACATCACATTTCT
8286691 TTAATT
1 TTAATT
8286697 ACAATCAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.31, C:0.14, G:0.03, T:0.51
Consensus pattern (32 bp):
TTAATTTATCATTATTAGTACATCACATTTCT
Found at i:8291137 original size:25 final size:25
Alignment explanation
Indices: 8291103--8291152 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
8291093 TCTTACACTT
8291103 ACAATCATTCTTTTCCCTTTCTAAA
1 ACAATCATTCTTTTCCCTTTCTAAA
*
8291128 ACAATCATTCTTTTTCCTTTCTAAA
1 ACAATCATTCTTTTCCCTTTCTAAA
8291153 CAAGTTATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.00, T:0.46
Consensus pattern (25 bp):
ACAATCATTCTTTTCCCTTTCTAAA
Found at i:8293498 original size:43 final size:43
Alignment explanation
Indices: 8293430--8293622 Score: 226
Period size: 43 Copynumber: 4.5 Consensus size: 43
8293420 TTATTTTAAA
* ** *
8293430 AAAC-CCGCTAAAGGTCATGGCCTTTAGTGGCACTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGACCTTTAGCAGCGCTTTTCCCAC
* ** *
8293472 AAACGCCGCTAAAGGTTATGGTCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGACCTTTAGCAGCGCTTTTCCCAC
* ** * *
8293515 AAACGCCGCTAAAAGTCGCGACCTGTAGTAGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGACCTTTAGCAGCGCTTTTCCCAC
* * *
8293558 AAACGCCGCTAAAAAGTCGTGACCTTTAGCAGCGCTTTTTCCAC
1 AAACGCCGCT-AAAGGTCATGACCTTTAGCAGCGCTTTTCCCAC
8293602 AAACGCCGCTAAAGGTCATGA
1 AAACGCCGCTAAAGGTCATGA
8293623 AATTTAAAAA
Statistics
Matches: 130, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
42 4 0.03
43 87 0.67
44 39 0.30
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCATGACCTTTAGCAGCGCTTTTCCCAC
Found at i:8294315 original size:23 final size:23
Alignment explanation
Indices: 8294288--8294615 Score: 260
Period size: 23 Copynumber: 14.3 Consensus size: 23
8294278 TTCCAGCAAC
*
8294288 TAAACACTTCAATTTGCAGCGA-T
1 TAAACACTTCAATTTACAGC-ATT
* * **
8294311 AAAACA-TCTCAATTTCCAGCAAC
1 TAAACACT-TCAATTTACAGCATT
*
8294334 TAAACACTTCAATTTGCAGTACA-T
1 TAAACACTTCAATTTACAG--CATT
* * *
8294358 AAAACACTTCATTTTACAACATT
1 TAAACACTTCAATTTACAGCATT
*
8294381 TAAGCACTTCAATTTACAGCATT
1 TAAACACTTCAATTTACAGCATT
*
8294404 TAAACACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTACAGCA-TT
* *
8294428 T-AACA-TCTCAATTAACAACATT
1 TAAACACT-TCAATTTACAGCATT
*
8294450 TATACAAC-TCAA-TTACAGCGA-T
1 TAAAC-ACTTCAATTTACAGC-ATT
* * **
8294472 AAAACA-TCTCAATTTCCAGCAAC
1 TAAACACT-TCAATTTACAGCATT
* * *
8294495 TAAACACTTCAATTTGCAGTAGT
1 TAAACACTTCAATTTACAGCATT
* * *
8294518 TAAACACTTCAATTTGCAGTACT
1 TAAACACTTCAATTTACAGCATT
*
8294541 TAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTACAGCATT
*
8294564 TAAACACTTTAATTTACAGCATT
1 TAAACACTTCAATTTACAGCATT
**
8294587 TAAACACTTCAATTTGTAGCATT
1 TAAACACTTCAATTTACAGCATT
8294610 TAAACA
1 TAAACA
8294616 ATAGCAGCCA
Statistics
Matches: 247, Mismatches: 41, Indels: 34
0.77 0.13 0.11
Matches are distributed among these distances:
21 1 0.00
22 22 0.09
23 201 0.81
24 21 0.09
25 2 0.01
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.32
Consensus pattern (23 bp):
TAAACACTTCAATTTACAGCATT
Found at i:8297503 original size:7 final size:7
Alignment explanation
Indices: 8297491--8297517 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8297481 ATATGGACTA
8297491 AAATATT
1 AAATATT
8297498 AAATATT
1 AAATATT
8297505 AAATATT
1 AAATATT
8297512 AAATAT
1 AAATAT
8297518 GAACGAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATATT
Found at i:8298172 original size:7 final size:7
Alignment explanation
Indices: 8298160--8298186 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8298150 ATATGGACTA
8298160 AAATATT
1 AAATATT
8298167 AAATATT
1 AAATATT
8298174 AAATATT
1 AAATATT
8298181 AAATAT
1 AAATAT
8298187 GAACGAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATATT
Found at i:8299234 original size:672 final size:674
Alignment explanation
Indices: 8296854--8301533 Score: 8901
Period size: 670 Copynumber: 7.0 Consensus size: 674
8296844 TCATGCCGCT
* *
8296854 TGAACGAAAGAGGAAGCAACGATAGCAACTCGCCCTGAGGGAGATCAACTAGCAACTAGATTCAC
1 TGAACGAAAGAGGAAGCAACGATAGCAACTCGCCCTAAGGGAGATCAACCAGCAACTAGATTCAC
*
8296919 TGGCACGGAGCCTGATTCACTCGCCCCCTGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
66 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
8296984 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
131 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
8297049 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGC-TTCTTGAAAGC
196 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
*
8297113 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATGGT-GGTGAAATCAGTG
261 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
8297177 CAGTGAAATGAAAAGGATAAACAAGTGTGATTGG-GTAGGTGTATTGACTTGGTGTTGCTGGAAA
326 C-----AATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAA
8297241 TGGG-AATTT-GGGGCAAATTTTGAGAGCTATTTGGGGGATTTA-GGACTAACGAGCGGGTATTC
386 TGGGAAATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTC
8297303 -AAAATT-GGGA-TTTGA-TTTTTTTGCGGCGTTTTCATT-AAAATGCCATTATAACTCAATTTT
451 AAAAATTGGGGATTTTGATTTTTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTTT
8297363 TTGTGGCGTTTTAACGT-AAACGCCACTATTGATTAATTTT-AATTTTTTATATTTAACATATTT
516 TTGTGGCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTATATTTAACATA-TT
8297426 TTTTATTTTTCTC-TTTGGAA-TTTTTTTAATTTTGAATATTGAA-TTTTTAATTGAAATATGGA
580 TTTTATTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATGGA
8297488 CTAAAATATT-AAATATTAAATATTAAATA
645 CTAAAATATTAAAATATTAAATATTAAATA
8297517 TGAACGAAAGA-GAAGCAACGATAGCAACTCGCCCTAAGGGAGATCAACCAGCAACTAGATTCAC
1 TGAACGAAAGAGGAAGCAACGATAGCAACTCGCCCTAAGGGAGATCAACCAGCAACTAGATTCAC
8297581 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
66 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
8297646 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
131 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
8297711 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
196 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
8297776 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
261 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
8297841 CAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAATGGGA
326 CAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAATGGGA
8297906 AATTT-GGGGCAAATTTTGAGAGCTATTT-GGGGATTTAGGGACTAACGAGCGGGTATTCAAAAA
391 AATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTCAAAAA
8297969 TTGGGGATTTTGATTTTTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAA-TTTTTGTG
456 TTGGGGATTTTGATTTTTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTTTTTGTG
8298033 GCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTATATTTAACATATTTTTTA
521 GCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAA-TTTTTTATATTTAACATATTTTTTA
8298098 TTTTTCTCTTTTGGAA-TTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATGGACTAAA
585 TTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATGGACTAAA
8298162 ATATT-AAATATTAAATATTAAATA
650 ATATTAAAATATTAAATATTAAATA
8298186 TGAACGAAAGAGGAAGCAACGATAGCAACTCGCCCTAAGGGAGATCAACCAGCAACTAGATTCAC
1 TGAACGAAAGAGGAAGCAACGATAGCAACTCGCCCTAAGGGAGATCAACCAGCAACTAGATTCAC
*
8298251 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCAG
66 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
8298316 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
131 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
8298381 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
196 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
8298446 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
261 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
8298511 CAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAATGGGA
326 CAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAATGGGA
8298576 AATTTGGGGGCAAATTTTGAGAGCTATTT-GGGGATTTAGGGACTAACGAGCGGGTATTCAAAAA
391 AATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTCAAAAA
8298640 TTGGGGATTTTGA-TTTTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAA-TTTTTGTG
456 TTGGGGATTTTGATTTTTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTTTTTGTG
8298703 GCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTATATTTAACATATTTTTTTA
521 GCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTATATTTAACATA-TTTTTTA
8298768 TTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATGGACTAAA
585 TTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATGGACTAAA
8298833 ATATTAAAATATTAAATATTAAATA
650 ATATTAAAATATTAAATATTAAATA
8298858 TGAACGAAAGAGGAAGCAACGATAGCAACTCGCCCTAAGGGAGATCAACCAGCAACTAGATTCAC
1 TGAACGAAAGAGGAAGCAACGATAGCAACTCGCCCTAAGGGAGATCAACCAGCAACTAGATTCAC
8298923 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
66 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
8298988 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
131 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
8299053 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
196 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
8299118 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
261 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
8299183 CAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAATGGGA
326 CAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAATGGGA
8299248 AATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGC-GGTATTCAAAAA
391 AATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTCAAAAA
8299312 TTGGGGATTTTGATTTTTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTTTTTGTG
456 TTGGGGATTTTGATTTTTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTTTTTGTG
8299377 GCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTATATTTAACATATTTTTT-T
521 GCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTATATTTAACATATTTTTTAT
8299441 TTTTCTCTTTTGG-ATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATGGACT-AAA
586 TTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATGGACTAAAA
8299504 TATTAAAATATTAAATATTAAATA
651 TATTAAAATATTAAATATTAAATA
8299528 TGAACGAAAGAGGAAGCAACGATAGCAACTCG-CCTAA-GGAGATCAACCAGCAACTAGATTCAC
1 TGAACGAAAGAGGAAGCAACGATAGCAACTCGCCCTAAGGGAGATCAACCAGCAACTAGATTCAC
8299591 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
66 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
8299656 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
131 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
8299721 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
196 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
8299786 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
261 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
8299851 CAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAATGGGA
326 CAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAATGGGA
8299916 AATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTCAAAAA
391 AATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTCAAAAA
8299981 TTGGGGATTTTGA-TTTTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTTTTTGTG
456 TTGGGGATTTTGATTTTTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTTTTTGTG
8300045 GCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTATATTTAACATATTTTTTA
521 GCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAA-TTTTTTATATTTAACATATTTTTTA
8300110 TTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATGGACTAAA
585 TTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATGGACTAAA
8300175 ATATTAAAATATTAAATATTAAATA
650 ATATTAAAATATTAAATATTAAATA
8300200 TGAACGAAAGAGGAAGCAACGATAGCAACTCGCCCTAAGGGAGATCAACCAGCAACTAGATTCAC
1 TGAACGAAAGAGGAAGCAACGATAGCAACTCGCCCTAAGGGAGATCAACCAGCAACTAGATTCAC
8300265 TGGCACGGAGCCTGATTCACTCG-CCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
66 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
8300329 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
131 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
8300394 TCCTAAACCAACAGATCCTCTTTCTCACAGCA-TTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
196 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
8300458 CTGGAATT-AAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
261 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
8300522 CAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAATGGGA
326 CAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAATGGGA
8300587 AATTTGGGGGCAAATTTTGAGAGCTATTT-GGGGATTTAGGGACTAACGAGCGGGTATTCAAAAA
391 AATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTCAAAAA
8300651 TTGGGGATTTTGATTTTTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTTTTTGTG
456 TTGGGGATTTTGATTTTTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTTTTTGTG
8300716 GCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTATATTTAACATA-TTTTTAT
521 GCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTATATTTAACATATTTTTTAT
8300780 TTTTCTC-TTTGGAA-TTTTTTTAA-TTTGAATATTGAA-TTTTTAATTGAAATATGGACT-AAA
586 TTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATGGACTAAAA
8300840 TATTAAAATATTAAATATTAAATA
651 TATTAAAATATTAAATATTAAATA
8300864 TGAACGAAAGAGGAAGCAACGATAGCAACTCGCCCTAAGGGAGATCAACCAGCAACTAGATTCAC
1 TGAACGAAAGAGGAAGCAACGATAGCAACTCGCCCTAAGGGAGATCAACCAGCAACTAGATTCAC
8300929 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
66 TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
8300994 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
131 TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
8301059 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
196 TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
8301124 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
261 CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
8301189 CAATGAAAAGGAT-AACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAATGGGA
326 CAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAATGGGA
8301253 AATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTCAAAAA
391 AATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTCAAAAA
8301318 TTGGGGATTTTGATTTTTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTTTTTGTG
456 TTGGGGATTTTGATTTTTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTTTTTGTG
8301383 GCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTTATATTTAACATATTTTTTA
521 GCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAA-TTTTTTATATTTAACATATTTTTTA
8301448 TTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATGGACTAAA
585 TTTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATGGACTAAA
*
8301513 ATATT-AAATATTAAATTTTAA
650 ATATTAAAATATTAAATATTAA
8301534 GTTTTTTATT
Statistics
Matches: 3968, Mismatches: 7, Indels: 74
0.98 0.00 0.02
Matches are distributed among these distances:
659 28 0.01
660 43 0.01
661 48 0.01
662 239 0.06
663 76 0.02
664 134 0.03
665 200 0.05
666 176 0.04
667 234 0.06
668 566 0.14
669 159 0.04
670 640 0.16
671 467 0.12
672 588 0.15
673 249 0.06
674 121 0.03
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (674 bp):
TGAACGAAAGAGGAAGCAACGATAGCAACTCGCCCTAAGGGAGATCAACCAGCAACTAGATTCAC
TGGCACGGAGCCTGATTCACTCGCCCCCGGAATGTCTTCTTTTCGCCCATTTAGTCTTCCCCCGG
TTCTAGGAGCAGCGATTGACTATCTTGATGCGGAGGGGTCGCTTCTTCATGAACCAAAAGTTATA
TCCTAAACCAACAGATCCTCTTTCTCACAGCATTTTCGGAGCAGGCTCAGTGCTTTCTTGAAAGC
CTGGAATTAAAAGAAACCGTAACAGATCGAGAGAAAATGAGTAGCTATAGTGGGTGAAATCAGTG
CAATGAAAAGGATAAACAAGTGTGATTGGTGTAGGTGTATTGACTTGGTGTTGCTGGAAATGGGA
AATTTGGGGGCAAATTTTGAGAGCTATTTGGGGGATTTAGGGACTAACGAGCGGGTATTCAAAAA
TTGGGGATTTTGATTTTTTTTGCGGCGTTTTCATTAAAAATGCCATTATAACTCAATTTTTTGTG
GCGTTTTAACGTAAAACGCCACTATTGATTAATTTTAAATTTTTTATATTTAACATATTTTTTAT
TTTTCTCTTTTGGAATTTTTTTTAATTTTGAATATTGAATTTTTTAATTGAAATATGGACTAAAA
TATTAAAATATTAAATATTAAATA
Found at i:8301538 original size:7 final size:7
Alignment explanation
Indices: 8301511--8301625 Score: 59
Period size: 7 Copynumber: 16.0 Consensus size: 7
8301501 ATATGGACTA
*
8301511 AAATATT
1 AAATTTT
*
8301518 AAATATT
1 AAATTTT
8301525 AAATTTT
1 AAATTTT
*
8301532 AAGTTTT
1 AAATTTT
**
8301539 TTATTTT
1 AAATTTT
**
8301546 TTATTTT
1 AAATTTT
**
8301553 TTATTTT
1 AAATTTT
**
8301560 TTATTTTT
1 AAATT-TT
8301568 AAATTTTT
1 AAA-TTTT
*
8301576 AATTTTT
1 AAATTTT
* *
8301583 TATTTTT
1 AAATTTT
8301590 AAATTTT
1 AAATTTT
*
8301597 AATTTTT
1 AAATTTT
8301604 AAATTTTT
1 AAA-TTTT
8301612 AAATTTT
1 AAATTTT
*
8301619 TAATTTT
1 AAATTTT
8301626 TGAGTTTATT
Statistics
Matches: 91, Mismatches: 14, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
7 75 0.82
8 14 0.15
9 2 0.02
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.68
Consensus pattern (7 bp):
AAATTTT
Found at i:8301544 original size:14 final size:13
Alignment explanation
Indices: 8301527--8301643 Score: 65
Period size: 14 Copynumber: 8.3 Consensus size: 13
8301517 TAAATATTAA
8301527 ATTTTAAGTTTTTT
1 ATTTTAA-TTTTTT
*
8301541 ATTTTTTATTTTTT
1 A-TTTTAATTTTTT
* *
8301555 ATTTTTTATTTTTAA
1 A-TTTTAATTTTT-T
8301570 ATTTTTAATTTTTT
1 A-TTTTAATTTTTT
* *
8301584 ATTTTTAAATTTTA
1 A-TTTTAATTTTTT
*
8301598 ATTTTTAAATTTTTAA
1 A-TTTT-AATTTTT-T
*
8301614 ATTTTTAATTTTTG
1 A-TTTTAATTTTTT
*
8301628 AGTTT-ATTTTTT
1 ATTTTAATTTTTT
8301640 ATTT
1 ATTT
8301644 CGGTTTAATG
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
12 9 0.10
13 3 0.03
14 39 0.44
15 30 0.34
16 7 0.08
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.73
Consensus pattern (13 bp):
ATTTTAATTTTTT
Found at i:8301569 original size:36 final size:36
Alignment explanation
Indices: 8301523--8301640 Score: 137
Period size: 36 Copynumber: 3.3 Consensus size: 36
8301513 ATATTAAATA
* * * *
8301523 TTAAATTTTAAGTTTTTTATTTTTTATTTTTTATTT
1 TTAATTTTTAAATTTTTAATTTTTTATTTTTTAATT
* *
8301559 TTTATTTTTAAATTTTTAATTTTTTATTTTTAAATT
1 TTAATTTTTAAATTTTTAATTTTTTATTTTTTAATT
* * * *
8301595 TTAATTTTTAAATTTTTAAATTTTTAATTTTTGAGT
1 TTAATTTTTAAATTTTTAATTTTTTATTTTTTAATT
*
8301631 TTATTTTTTA
1 TTAATTTTTA
8301641 TTTCGGTTTA
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 69 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (36 bp):
TTAATTTTTAAATTTTTAATTTTTTATTTTTTAATT
Found at i:8301643 original size:7 final size:7
Alignment explanation
Indices: 8301523--8301626 Score: 109
Period size: 7 Copynumber: 14.3 Consensus size: 7
8301513 ATATTAAATA
*
8301523 TTAAATT
1 TTAATTT
8301530 TTAAGTTT
1 TTAA-TTT
*
8301538 TTTATTT
1 TTAATTT
*
8301545 TTTATTT
1 TTAATTT
*
8301552 TTTATTT
1 TTAATTT
*
8301559 TTTATTT
1 TTAATTT
8301566 TTAAATTT
1 TT-AATTT
8301574 TTAATTT
1 TTAATTT
*
8301581 TTTATTT
1 TTAATTT
*
8301588 TTAAATT
1 TTAATTT
8301595 TTAATTT
1 TTAATTT
8301602 TTAAATTT
1 TT-AATTT
8301610 TTAAATTT
1 TT-AATTT
8301618 TTAATTT
1 TTAATTT
8301625 TT
1 TT
8301627 GAGTTTATTT
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
7 61 0.70
8 26 0.30
ACGTcount: A:0.27, C:0.00, G:0.01, T:0.72
Consensus pattern (7 bp):
TTAATTT
Found at i:8302646 original size:81 final size:81
Alignment explanation
Indices: 8302511--8302677 Score: 212
Period size: 81 Copynumber: 2.1 Consensus size: 81
8302501 GTTATATGAC
* * * *
8302511 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCCGACTTTTAGCGGCGTTTTACCAAAAGC
1 TTTTAGCGGCGTTTTACAAAAAACGCCGCTATTACTCCGACTTTTAGCGGCGTTTT-CCAAAAAC
8302576 ACCGCTATTGCTCTGT-
65 ACCGCTATTGCTCTGTG
* * * *
8302592 TTTTAGCGGTGTTTTAACAAAAAACGCCGCTATTACTCTG-TTTTTAGCGGCGTTTTCTAAAAAC
1 TTTTAGCGGCGTTTT-ACAAAAAACGCCGCTATTACTCCGACTTTTAGCGGCGTTTTCCAAAAAC
* *
8302656 GCTGCTATTGCTCTGTG
65 ACCGCTATTGCTCTGTG
8302673 TTTTA
1 TTTTA
8302678 CAATTTTTGC
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 20 0.27
81 34 0.46
82 20 0.27
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.37
Consensus pattern (81 bp):
TTTTAGCGGCGTTTTACAAAAAACGCCGCTATTACTCCGACTTTTAGCGGCGTTTTCCAAAAACA
CCGCTATTGCTCTGTG
Found at i:8302675 original size:41 final size:40
Alignment explanation
Indices: 8302511--8302677 Score: 210
Period size: 41 Copynumber: 4.1 Consensus size: 40
8302501 GTTATATGAC
* * *
8302511 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCCGAC
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTG-T
* *
8302552 TTTTAGCGGCGTTTTACCAAAAGCACCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGT
* * *
8302592 TTTTAGCGGTGTTTTAACAAAAAACGCCGCTATTACTCTGT
1 TTTTAGCGGCGTTTT-ACCAAAAACGCCGCTATTGCTCTGT
* *
8302633 TTTTAGCGGCGTTTT-CTAAAAACGCTGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGT
8302672 GTTTTA
1 -TTTTA
8302678 CAATTTTTGC
Statistics
Matches: 112, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 21 0.19
40 19 0.17
41 72 0.64
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.37
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGT
Found at i:8304740 original size:22 final size:22
Alignment explanation
Indices: 8304712--8304755 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
8304702 TAGAGACTCA
8304712 AAACATATTTTAACTTTTAAAT
1 AAACATATTTTAACTTTTAAAT
8304734 AAACATATTTTAACTTTTAAAT
1 AAACATATTTTAACTTTTAAAT
8304756 TTTTACTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (22 bp):
AAACATATTTTAACTTTTAAAT
Found at i:8308689 original size:7 final size:7
Alignment explanation
Indices: 8308672--8308724 Score: 63
Period size: 7 Copynumber: 7.4 Consensus size: 7
8308662 ATAGATTTTG
8308672 AACCTCTA
1 AACCT-TA
*
8308680 AACCCTA
1 AACCTTA
8308687 AACCTTA
1 AACCTTA
8308694 AA-CTATA
1 AACCT-TA
*
8308701 GACCTTA
1 AACCTTA
8308708 AACCTTA
1 AACCTTA
8308715 AACCTTA
1 AACCTTA
8308722 AAC
1 AAC
8308725 TCGAATCCTA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
6 2 0.05
7 31 0.79
8 6 0.15
ACGTcount: A:0.43, C:0.30, G:0.02, T:0.25
Consensus pattern (7 bp):
AACCTTA
Found at i:8308952 original size:22 final size:20
Alignment explanation
Indices: 8308905--8308954 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
8308895 ATGTGTCAAT
*
8308905 TACATAAAAAAATACTGAAA
1 TACATAAAAAAATAATGAAA
*
8308925 TGACATAAAAAATTAATAAGAAA
1 T-ACATAAAAAAATAAT--GAAA
8308948 TACATAA
1 TACATAA
8308955 TGATATAGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 1 0.04
21 13 0.52
22 6 0.24
23 5 0.20
ACGTcount: A:0.64, C:0.08, G:0.06, T:0.22
Consensus pattern (20 bp):
TACATAAAAAAATAATGAAA
Found at i:8315350 original size:21 final size:21
Alignment explanation
Indices: 8315324--8315364 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8315314 ATCTGCTCAA
* *
8315324 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
8315345 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
8315365 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:8319912 original size:2 final size:2
Alignment explanation
Indices: 8319905--8319937 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
8319895 CCGAACTTCT
*
8319905 TC TC TC TC TC TC TC TC TC TC TC TC TC TC CC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
8319938 TTTAAGTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
TC
Found at i:8333857 original size:40 final size:40
Alignment explanation
Indices: 8333801--8334112 Score: 516
Period size: 40 Copynumber: 7.8 Consensus size: 40
8333791 AACATTGGAT
8333801 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
8333841 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
8333881 TATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
8333921 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
8333961 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
8334001 TATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
8334041 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTCA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
8334081 TATGTCCGGGTTAAGACCCGAAGGCAAATATG
1 TATATCCGGGCTAAGACCCGAAGGCAATTATG
8334113 TTTGCGGCTG
Statistics
Matches: 254, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 254 1.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:8337454 original size:16 final size:18
Alignment explanation
Indices: 8337435--8337472 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
8337425 TTCTATATGA
8337435 ATTTTACT-TT-TATTTT
1 ATTTTACTATTGTATTTT
8337451 ATTTTACTATTGTATTTT
1 ATTTTACTATTGTATTTT
8337469 ATTT
1 ATTT
8337473 AAATAAGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (18 bp):
ATTTTACTATTGTATTTT
Found at i:8344046 original size:9 final size:9
Alignment explanation
Indices: 8344034--8344063 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
8344024 TTATTCCATA
8344034 ATATAATTT
1 ATATAATTT
8344043 ATATAATTT
1 ATATAATTT
8344052 ATATAATTT
1 ATATAATTT
8344061 ATA
1 ATA
8344064 ACTTGATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (9 bp):
ATATAATTT
Found at i:8344252 original size:19 final size:19
Alignment explanation
Indices: 8344228--8344267 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
8344218 ATTTCTTAAT
*
8344228 TTAATAACAATAATAATAA
1 TTAATAACAACAATAATAA
*
8344247 TTAATAATAACAATAATAA
1 TTAATAACAACAATAATAA
8344266 TT
1 TT
8344268 TATATATCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (19 bp):
TTAATAACAACAATAATAA
Found at i:8350250 original size:27 final size:26
Alignment explanation
Indices: 8350220--8350282 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
8350210 AGATAATTAA
8350220 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
8350247 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
8350274 AATATAAAT
1 AATA-AAAT
8350283 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:8350269 original size:15 final size:15
Alignment explanation
Indices: 8350249--8350278 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8350239 ATAATCCTAA
*
8350249 TAATTATCTTAATAT
1 TAATTATCCTAATAT
8350264 TAATTATCCTAATAT
1 TAATTATCCTAATAT
8350279 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:8351506 original size:22 final size:23
Alignment explanation
Indices: 8351478--8351520 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
8351468 TTTATTTTAA
*
8351478 TTAAATAATAT-TTATTTTTATG
1 TTAAATAATATATTATGTTTATG
*
8351500 TTAAATATTATATTATGTTTA
1 TTAAATAATATATTATGTTTA
8351521 ATTTTTGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (23 bp):
TTAAATAATATATTATGTTTATG
Found at i:8354762 original size:10 final size:10
Alignment explanation
Indices: 8354744--8354784 Score: 68
Period size: 10 Copynumber: 4.3 Consensus size: 10
8354734 TTAATTTAAA
8354744 TTTTT-TATT
1 TTTTTATATT
8354753 TTTTTATATT
1 TTTTTATATT
8354763 TTTTTATATT
1 TTTTTATATT
8354773 TTTTTAT-TT
1 TTTTTATATT
8354782 TTT
1 TTT
8354785 CTTTCAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
9 10 0.32
10 21 0.68
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTATATT
Found at i:8354767 original size:18 final size:18
Alignment explanation
Indices: 8354744--8354784 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
8354734 TTAATTTAAA
8354744 TTTTTTATTTTTTTATAT
1 TTTTTTATTTTTTTATAT
8354762 TTTTTTATATTTTTT-TAT
1 TTTTTTAT-TTTTTTATAT
8354780 TTTTT
1 TTTTT
8354785 CTTTCAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTTTATTTTTTTATAT
Found at i:8354882 original size:7 final size:7
Alignment explanation
Indices: 8354870--8354897 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
8354860 ATATGGACTA
8354870 AAATATT
1 AAATATT
8354877 AAATATT
1 AAATATT
8354884 AAATATT
1 AAATATT
8354891 AAATATT
1 AAATATT
8354898 TAAGTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
AAATATT
Found at i:8354919 original size:6 final size:7
Alignment explanation
Indices: 8354902--8354942 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
8354892 AATATTTAAG
8354902 TTTTTTA
1 TTTTTTA
8354909 TTTTTTA
1 TTTTTTA
8354916 TTTTTTA
1 TTTTTTA
*
8354923 TTTTTAA
1 TTTTTTA
* *
8354930 ATTTTAA
1 TTTTTTA
8354937 TTTTTT
1 TTTTTT
8354943 TGAAGATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (7 bp):
TTTTTTA
Found at i:8355434 original size:24 final size:24
Alignment explanation
Indices: 8355406--8355454 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
8355396 CCAAAATAAC
8355406 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
8355430 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
8355454 A
1 A
8355455 TAAATATATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (24 bp):
AATTAATTTTTATATAAACTTTTA
Found at i:8355457 original size:11 final size:12
Alignment explanation
Indices: 8355413--8355458 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
8355403 AACAATTAAT
8355413 TTTTATATAAAC
1 TTTTATATAAAC
* * *
8355425 TTTTAAATTAAT
1 TTTTATATAAAC
8355437 TTTTATATAAAC
1 TTTTATATAAAC
8355449 TTTTA-ATAAA
1 TTTTATATAAA
8355459 TATATGAGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
11 5 0.18
12 23 0.82
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTTATATAAAC
Found at i:8356114 original size:41 final size:40
Alignment explanation
Indices: 8356069--8356163 Score: 145
Period size: 41 Copynumber: 2.4 Consensus size: 40
8356059 TTATATAACT
* *
8356069 TTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-ATC
* *
8356110 TTTAGCGGCGTTTTACCAAAAGCGCGGCTAATGCTCTATT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTATC
8356150 TTTAGCGGCGTTTT
1 TTTAGCGGCGTTTT
8356164 TGTTAAAACG
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
40 15 0.30
41 35 0.70
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (40 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTATC
Found at i:8356233 original size:12 final size:12
Alignment explanation
Indices: 8356218--8356243 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8356208 GTTTTTTGAT
8356218 AAAACGCCGCTA
1 AAAACGCCGCTA
8356230 AAAACGCCGCTA
1 AAAACGCCGCTA
8356242 AA
1 AA
8356244 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:8359476 original size:24 final size:24
Alignment explanation
Indices: 8359449--8359500 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
8359439 TTAGTAAGTC
*
8359449 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
8359473 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
8359497 AAAT
1 AAAT
8359501 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:8361436 original size:24 final size:24
Alignment explanation
Indices: 8361409--8361460 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
8361399 TTAGTAAGTC
*
8361409 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
8361433 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
8361457 AAAT
1 AAAT
8361461 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:8363332 original size:13 final size:13
Alignment explanation
Indices: 8363314--8363338 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8363304 TATTACTTAA
8363314 AATAAAAAATATG
1 AATAAAAAATATG
8363327 AATAAAAAATAT
1 AATAAAAAATAT
8363339 TTCTTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (13 bp):
AATAAAAAATATG
Found at i:8364166 original size:18 final size:16
Alignment explanation
Indices: 8364133--8364168 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
8364123 ATGTACTACT
8364133 ATTATATATAATTATA
1 ATTATATATAATTATA
8364149 ATTATATTATAGATTATA
1 ATTATA-TATA-ATTATA
8364167 AT
1 AT
8364169 AAAAAGTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 4 0.22
18 8 0.44
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (16 bp):
ATTATATATAATTATA
Found at i:8364410 original size:7 final size:7
Alignment explanation
Indices: 8364379--8364420 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
8364369 AAGGTACTAC
*
8364379 TATTTTA
1 TATTATA
*
8364386 TATAATA
1 TATTATA
8364393 -ATTATTA
1 TATTA-TA
8364400 TATTATA
1 TATTATA
8364407 TATTATA
1 TATTATA
8364414 TATTATA
1 TATTATA
8364421 ATAAAAGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
6 3 0.10
7 23 0.77
8 4 0.13
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TATTATA
Found at i:8367173 original size:41 final size:43
Alignment explanation
Indices: 8367127--8367211 Score: 113
Period size: 41 Copynumber: 2.0 Consensus size: 43
8367117 AGGGTAAATC
* * *
8367127 CAACAACTCAAGTTTATCTTCT-CT-TTTTTAAATT-TATTTTT
1 CAACAACCCAAGATTATCTACTCCTCTTTTTAAATTCT-TTTTT
8367168 CAACAACCCAAGATTATCTACTCCTCTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTACTCCTCTTTTTAAATTCTTTTTT
8367211 C
1 C
8367212 TAGGATAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
41 19 0.50
42 2 0.05
43 16 0.42
44 1 0.03
ACGTcount: A:0.27, C:0.22, G:0.02, T:0.48
Consensus pattern (43 bp):
CAACAACCCAAGATTATCTACTCCTCTTTTTAAATTCTTTTTT
Found at i:8367500 original size:21 final size:21
Alignment explanation
Indices: 8367476--8367519 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
8367466 TGCAATGATA
*
8367476 AAAATACTAGTGAAATGT-CCT
1 AAAATACTACT-AAATGTACCT
*
8367497 AAAATGCTACTAAATGTACCT
1 AAAATACTACTAAATGTACCT
8367518 AA
1 AA
8367520 GTACAAGTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.45, C:0.16, G:0.11, T:0.27
Consensus pattern (21 bp):
AAAATACTACTAAATGTACCT
Found at i:8371539 original size:110 final size:108
Alignment explanation
Indices: 8371362--8371568 Score: 245
Period size: 110 Copynumber: 1.9 Consensus size: 108
8371352 CAAAGACAAT
* * * * * *
8371362 AAAAAAATTGGTGTTGGCTAGTAGATGACCAGCACCAGGTACAATTTTTGGTTCCCAAGGCACTT
1 AAAAAAATTGGTGCTGGCCAGTAGATGACCAGCACCAAGTACAATTATCGGCTCCCAAGGCACTT
* * * * *
8371427 TTTTTTTCTTTGGGACACTGATGGCCGTCACCAGTGTATTTTAA
66 TTTTTAT-TTTGGAACACAGATGACCGGCACCAGTGTATTTTAA
* * * *
8371471 AAAAAAATTGGGTGCTGGCCATGTA-ATGGCCGGCACCAAGTACAATTATCGGCTCCCAATGCAT
1 AAAAAAATT-GGTGCTGGCCA-GTAGATGACCAGCACCAAGTACAATTATCGGCTCCCAAGGCAC
8371535 TTTTTTTATTTTGGAACACAGATGACCGGCACCA
64 TTTTTTTATTTTGGAACACAGATGACCGGCACCA
8371569 AACCCTATAT
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
109 30 0.37
110 48 0.59
111 3 0.04
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (108 bp):
AAAAAAATTGGTGCTGGCCAGTAGATGACCAGCACCAAGTACAATTATCGGCTCCCAAGGCACTT
TTTTTATTTTGGAACACAGATGACCGGCACCAGTGTATTTTAA
Found at i:8372186 original size:90 final size:87
Alignment explanation
Indices: 8371984--8372304 Score: 318
Period size: 90 Copynumber: 3.6 Consensus size: 87
8371974 TCAAAATAAT
* * * * **
8371984 TGTATTATTTCTTTAGAATGTTTGTATTTTTTTATATCTGTAAATTTAATGTAGTTGCTTAGGAT
1 TGTATTAATT-TTTAGAATGTTTGTATTTTTTTGTATCTGTAAATTTAATTTAG-TGCGTATTA-
* * *
8372049 TTAAAGTTTCATTTTTATATTTTCG
63 TTATAGTTTGAATTTTATATTTTCG
*
8372074 TGTATTAATTTCTTAGAATGTTTGTATTTTTTTGTATCTGTAAATTTAATTTAGTCCGTATTATA
1 TGTATTAATTT-TTAGAATGTTTGTATTTTTTTGTATCTGTAAATTTAATTTAGTGCGTATTAT-
* * *
8372139 TGTAGTTTGAATTTAAAATTTTCG
64 TATAGTTTGAATTTTATATTTTCG
** * * * ** * * *
8372163 TGTATTAATTTTTCCCATCTGTTTGTAGTTTGTTGGGTGTTTCAATTTAATTTAGTGCGTATTAT
1 TGTATTAATTTTT-AGA-ATGTTTGTATTTTTTTGTATCTGTAAATTTAATTTAGTGCGTATTAT
* * *
8372228 TTTTGTTTGAATTTTATATTTTTG
64 TATAGTTTGAATTTTATATTTTCG
* *
8372252 TGTATTAATATTGTAGAATGTTTGTATTTTATTGTATCTGTAAATTTAATTTA
1 TGTATTAAT-TTTTAGAATGTTTGTATTTTTTTGTATCTGTAAATTTAATTTA
8372305 TTGTGTACTT
Statistics
Matches: 186, Mismatches: 40, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
88 31 0.17
89 65 0.35
90 90 0.48
ACGTcount: A:0.24, C:0.05, G:0.14, T:0.56
Consensus pattern (87 bp):
TGTATTAATTTTTAGAATGTTTGTATTTTTTTGTATCTGTAAATTTAATTTAGTGCGTATTATTA
TAGTTTGAATTTTATATTTTCG
Found at i:8376703 original size:23 final size:23
Alignment explanation
Indices: 8376685--8376759 Score: 95
Period size: 21 Copynumber: 3.4 Consensus size: 23
8376675 AGGCACTTTA
8376685 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
*
8376708 TGTGTCGTA--TCAGACACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
* *
8376729 TGTGTCGT-TTT-AGGCACTTTG
1 TGTGTCGTATTTCAGGCACCTCG
8376750 TGTGTCGTAT
1 TGTGTCGTAT
8376760 ACTGATCAGG
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
21 34 0.76
22 2 0.04
23 9 0.20
ACGTcount: A:0.13, C:0.21, G:0.27, T:0.39
Consensus pattern (23 bp):
TGTGTCGTATTTCAGGCACCTCG
Found at i:8378804 original size:27 final size:27
Alignment explanation
Indices: 8378762--8378894 Score: 173
Period size: 27 Copynumber: 5.0 Consensus size: 27
8378752 GTCACAAGAT
*
8378762 ACAGATAT-TGTGGCAGAGCCTCCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
*
8378788 ACAGATATATGTGGCAGAGCCACCTGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* *
8378815 TCAGATA-ATCGTGGCATAGCCACCAGA
1 ACAGATATAT-GTGGCAGAGCCACCAGA
8378842 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* *
8378869 TCAGATA-ATTGTGGCATAGCCACCAG
1 ACAGATATA-TGTGGCAGAGCCACCAG
8378895 GACGCTTCTT
Statistics
Matches: 94, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
26 11 0.12
27 81 0.86
28 2 0.02
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (27 bp):
ACAGATATATGTGGCAGAGCCACCAGA
Found at i:8378843 original size:54 final size:54
Alignment explanation
Indices: 8378758--8378894 Score: 222
Period size: 54 Copynumber: 2.5 Consensus size: 54
8378748 CGAAGTCACA
* *
8378758 AGATACAGAT-ATTGTGGCAGAGCCTCCAGAACAGATATATGTGGCAGAGCCACC
1 AGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
* *
8378812 TGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
8378866 AGATCAGATAATTGTGGCATAGCCACCAG
1 AGATCAGATAATTGTGGCATAGCCACCAG
8378895 GACGCTTCTT
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
53 5 0.07
54 71 0.93
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.19
Consensus pattern (54 bp):
AGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
Found at i:8379034 original size:26 final size:27
Alignment explanation
Indices: 8378998--8379062 Score: 87
Period size: 26 Copynumber: 2.4 Consensus size: 27
8378988 CAAAAGTAAC
**
8378998 CCTAGGGGTATAATGGTAATTTT-GTA
1 CCTAGGGGTATAACAGTAATTTTCGTA
8379024 CCTAGGGGTATAACAGTAATTTTCCGTA
1 CCTAGGGGTATAACAGTAATTTT-CGTA
*
8379052 CATAGGGGTAT
1 CCTAGGGGTAT
8379063 TCAAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 21 0.62
28 13 0.38
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (27 bp):
CCTAGGGGTATAACAGTAATTTTCGTA
Found at i:8380488 original size:26 final size:26
Alignment explanation
Indices: 8380455--8380562 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
8380445 TGAAATTCCC
8380455 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
8380481 ATGATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
*
8380507 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
8380533 ATCATGGAACATTTACCTAACCCGTT
1 ATCATGGAACATTTACCTAACCCATT
8380559 ATCA
1 ATCA
8380563 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:8386863 original size:27 final size:27
Alignment explanation
Indices: 8386821--8386952 Score: 180
Period size: 27 Copynumber: 4.9 Consensus size: 27
8386811 GTCACAAGAT
8386821 ACAGATAT-TGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
8386847 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* *
8386874 TCAGATA-ATCGTGGCATAGCCACCAGA
1 ACAGATATAT-GTGGCAGAGCCACCAGA
*
8386901 ACAGATATATGTGGCAGAGCCACCAGT
1 ACAGATATATGTGGCAGAGCCACCAGA
* *
8386928 TCAGATA-ATTGTGGCATAGCCACCA
1 ACAGATATA-TGTGGCAGAGCCACCA
8386953 AGATGCTTCC
Statistics
Matches: 95, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
26 11 0.12
27 82 0.86
28 2 0.02
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.18
Consensus pattern (27 bp):
ACAGATATATGTGGCAGAGCCACCAGA
Found at i:8386897 original size:54 final size:54
Alignment explanation
Indices: 8386817--8386952 Score: 229
Period size: 54 Copynumber: 2.5 Consensus size: 54
8386807 CGAAGTCACA
*
8386817 AGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACC
1 AGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
*
8386871 AGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
*
8386925 AGTTCAGATAATTGTGGCATAGCCACCA
1 AGATCAGATAATTGTGGCATAGCCACCA
8386953 AGATGCTTCC
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 72 0.94
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
AGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACC
Found at i:8387121 original size:28 final size:26
Alignment explanation
Indices: 8387059--8387121 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
8387049 AAAGTAACCC
** *
8387059 TAGGGGTATAATGGTAATTTTGCACT
1 TAGGGGTATAACAGTAATTTTGCACA
*
8387085 TAGGGGTATAACAGTAATTTTTCGTACA
1 TAGGGGTATAACAGTAA-TTTT-GCACA
8387113 TAGGGGTAT
1 TAGGGGTAT
8387122 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 15 0.48
27 4 0.13
28 12 0.39
ACGTcount: A:0.29, C:0.08, G:0.27, T:0.37
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTGCACA
Found at i:8388335 original size:12 final size:12
Alignment explanation
Indices: 8388318--8388342 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8388308 AAATAGAAGC
8388318 AAGGTACCAAGA
1 AAGGTACCAAGA
8388330 AAGGTACCAAGA
1 AAGGTACCAAGA
8388342 A
1 A
8388343 CTTACCTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.24, T:0.08
Consensus pattern (12 bp):
AAGGTACCAAGA
Found at i:8388564 original size:26 final size:26
Alignment explanation
Indices: 8388528--8388609 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
8388518 TGAAATTCCA
8388528 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
8388554 ATCATGAAACATTTACCTGACTCATT
1 ATCATGGAACATTTACCTAACCCATT
8388580 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8388606 ATCA
1 ATCA
8388610 ATTTGTATCA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:8392269 original size:48 final size:49
Alignment explanation
Indices: 8392210--8392435 Score: 352
Period size: 48 Copynumber: 4.7 Consensus size: 49
8392200 CTATCCTTTC
* *
8392210 AATTTTCTTTTCTCATTTCATTGAAATTATCTTTCTTCCTATTTTAATTT
1 AATTTT-TTTTCTCATTTCATTTAAATTATCTTTCTTCCTATTTAAATTT
*
8392260 -ATTTTTTTTCTCATTTCATTTAAATTATCTTTCTTCCTATTTTAATTT
1 AATTTTTTTTCTCATTTCATTTAAATTATCTTTCTTCCTATTTAAATTT
*
8392308 -ATTTTTTTTCTCATTTCATTTAAATTAT-TTTTTTCC-ATTTAAATTT
1 AATTTTTTTTCTCATTTCATTTAAATTATCTTTCTTCCTATTTAAATTT
* *
8392354 AATTTTTTTTCTCATTTCATTTAAATTACCTTTCTTCCCATTTAAATTT
1 AATTTTTTTTCTCATTTCATTTAAATTATCTTTCTTCCTATTTAAATTT
*
8392403 AATTTTTTTTCTCATTTTATTTAAATTATCTTT
1 AATTTTTTTTCTCATTTCATTTAAATTATCTTT
8392436 TTTTCCATTT
Statistics
Matches: 166, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
46 9 0.05
47 34 0.20
48 77 0.46
49 46 0.28
ACGTcount: A:0.23, C:0.14, G:0.00, T:0.62
Consensus pattern (49 bp):
AATTTTTTTTCTCATTTCATTTAAATTATCTTTCTTCCTATTTAAATTT
Found at i:8392301 original size:21 final size:21
Alignment explanation
Indices: 8392233--8392306 Score: 58
Period size: 26 Copynumber: 3.2 Consensus size: 21
8392223 CATTTCATTG
8392233 AAATTATCTTTCTTCCTATTTT
1 AAATTATCTTTCTTCCTA-TTT
* * *
8392255 AATTTATTTTTTTTCTCATTTCATTT
1 AAATTATCTTTCTTC-C---T-ATTT
8392281 AAATTATCTTTCTTCCTATTT
1 AAATTATCTTTCTTCCTATTT
*
8392302 TAATT
1 AAATT
8392307 TATTTTTTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
21 8 0.20
22 13 0.32
23 1 0.03
25 1 0.03
26 16 0.40
27 1 0.03
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (21 bp):
AAATTATCTTTCTTCCTATTT
Found at i:8392348 original size:19 final size:21
Alignment explanation
Indices: 8392324--8392529 Score: 88
Period size: 22 Copynumber: 9.2 Consensus size: 21
8392314 TTTCTCATTT
8392324 CATTTAAA-TT-ATTTTTTTC
1 CATTTAAATTTAATTTTTTTC
8392343 CATTTAAATTTAATTTTTTTTC
1 CATTTAAATTTAA-TTTTTTTC
*
8392365 TCATTT-CATTTAAATTACCTTTCTTCC
1 -CATTTAAATTT-AATT---TTT-TT-C
8392392 CATTTAAATTTAATTTTTTTTC
1 CATTTAAATTTAA-TTTTTTTC
* *
8392414 TCATTTTATTTAAATTATCTTTTTTTC
1 -CA-TTTA---AATTTA-ATTTTTTTC
** * *
8392441 CATTTCGATTTAA-ATATTTC
1 CATTTAAATTTAATTTTTTTC
*
8392461 AATTTAAATTT--TTTCTCATTT-
1 CATTTAAATTTAATTT-T--TTTC
8392482 CATTTAAA-TT-ATCTTTCTTTC
1 CATTTAAATTTAAT-TTT-TTTC
8392503 CATTTAAATTTAATTTTTTTC
1 CATTTAAATTTAATTTTTTTC
8392524 TCATTT
1 -CATTT
8392530 CATTTAAATT
Statistics
Matches: 142, Mismatches: 17, Indels: 53
0.67 0.08 0.25
Matches are distributed among these distances:
19 9 0.06
20 20 0.14
21 22 0.15
22 34 0.24
23 13 0.09
24 7 0.05
25 6 0.04
26 11 0.08
27 20 0.14
ACGTcount: A:0.26, C:0.14, G:0.00, T:0.60
Consensus pattern (21 bp):
CATTTAAATTTAATTTTTTTC
Found at i:8392361 original size:20 final size:19
Alignment explanation
Indices: 8392324--8392361 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
8392314 TTTCTCATTT
*
8392324 CATTTAAATTATTTTTTTC
1 CATTTAAATTAATTTTTTC
8392343 CATTTAAATTTAATTTTTT
1 CATTTAAA-TTAATTTTTT
8392362 TTCTCATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (19 bp):
CATTTAAATTAATTTTTTC
Found at i:8392389 original size:95 final size:95
Alignment explanation
Indices: 8392210--8392445 Score: 348
Period size: 95 Copynumber: 2.4 Consensus size: 95
8392200 CTATCCTTTC
* * *
8392210 AATTTTCTTTTCTCATTTCATTGAAATTATCTTTCTTCCTATTTTAATTTATTTTTTTTCTCATT
1 AATTTT-TTTTCTCATTTCATTTAAATTAT-TTTTTTCC-ATTTAAATTTATTTTTTTTCTCATT
* * *
8392275 TCATTTAAATTATCTTTCTTCCTATTTTAATTT
63 TCATTTAAATTACCTTTCTTCCCATTTAAATTT
8392308 -ATTTTTTTTCTCATTTCATTTAAATTATTTTTTTCCATTTAAATTTAATTTTTTTTCTCATTTC
1 AATTTTTTTTCTCATTTCATTTAAATTATTTTTTTCCATTTAAATTT-ATTTTTTTTCTCATTTC
8392372 ATTTAAATTACCTTTCTTCCCATTTAAATTT
65 ATTTAAATTACCTTTCTTCCCATTTAAATTT
*
8392403 AATTTTTTTTCTCATTTTATTTAAATTATCTTTTTTTCCATTT
1 AATTTTTTTTCTCATTTCATTTAAATTA--TTTTTTTCCATTT
8392446 CGATTTAAAT
Statistics
Matches: 127, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
94 9 0.07
95 52 0.41
96 48 0.38
97 5 0.04
98 13 0.10
ACGTcount: A:0.22, C:0.14, G:0.00, T:0.63
Consensus pattern (95 bp):
AATTTTTTTTCTCATTTCATTTAAATTATTTTTTTCCATTTAAATTTATTTTTTTTCTCATTTCA
TTTAAATTACCTTTCTTCCCATTTAAATTT
Found at i:8392489 original size:111 final size:112
Alignment explanation
Indices: 8392344--8392565 Score: 342
Period size: 111 Copynumber: 2.0 Consensus size: 112
8392334 ATTTTTTTCC
*
8392344 ATTTAAATTTAATTTTTTTTCTCATTTCATTTAAATTACCTTTCTTCCCATTTAAATTTAATTTT
1 ATTTAAATTTAATATTTTTTCTCATTTCATTTAAATTACCTTTCTTCCCATTTAAATTTAA-TTT
*
8392409 TTTTCTCATTTTATTTAAA-TTATCTTTTTTTC-CATTTCGATTTAAAT
65 TTTTCTCATTTCATTTAAATTTATCTTTTTTTCTCATTTC-ATTTAAAT
* * *
8392456 ATTTCAATTTAA-ATTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAATTTT
1 ATTTAAATTTAATATTTTTTCTCATTTCATTTAAATTACCTTTCTTCCCATTTAAATTTAATTTT
* *
8392520 TTTCTCATTTCATTTAAATTTATTTTTTTTTCTCTTTTCATTTAAA
66 TTTCTCATTTCATTTAAATTTATCTTTTTTTCTCATTTCATTTAAA
8392566 GTATCTTTCT
Statistics
Matches: 101, Mismatches: 7, Indels: 5
0.89 0.06 0.04
Matches are distributed among these distances:
110 21 0.21
111 64 0.63
112 16 0.16
ACGTcount: A:0.26, C:0.13, G:0.00, T:0.61
Consensus pattern (112 bp):
ATTTAAATTTAATATTTTTTCTCATTTCATTTAAATTACCTTTCTTCCCATTTAAATTTAATTTT
TTTCTCATTTCATTTAAATTTATCTTTTTTTCTCATTTCATTTAAAT
Found at i:8392514 original size:62 final size:63
Alignment explanation
Indices: 8392393--8392515 Score: 185
Period size: 62 Copynumber: 2.0 Consensus size: 63
8392383 CTTTCTTCCC
* * * **
8392393 ATTTAAATTTAATTTTTTTTCTCATTTTATTTAAATTATCTTTTTTTCCATTTCGATTTAAAT
1 ATTTAAATTTAATATTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAAAT
*
8392456 ATTTCAATTTAA-ATTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAA
1 ATTTAAATTTAATATTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAA
8392516 TTTTTTTCTC
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
62 43 0.80
63 11 0.20
ACGTcount: A:0.28, C:0.11, G:0.01, T:0.59
Consensus pattern (63 bp):
ATTTAAATTTAATATTTTTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAAAT
Found at i:8392551 original size:21 final size:21
Alignment explanation
Indices: 8392457--8392551 Score: 68
Period size: 21 Copynumber: 4.2 Consensus size: 21
8392447 GATTTAAATA
*
8392457 TTTCAATTTAAATTT-TTTCTCA
1 TTTC-ATTTAAATTTATTT-TCT
8392479 TTTCATTTAAA-TTATCTTTCT
1 TTTCATTTAAATTTAT-TTTCT
*
8392500 TTCCATTTAAATTTAATTTTTTTCT
1 TTTCATTTAAATTT-A---TTTTCT
*
8392525 CATTTCATTTAAATTTATTTTTT
1 --TTTCATTTAAATTTATTTTCT
8392548 TTTC
1 TTTC
8392552 TCTTTTCATT
Statistics
Matches: 60, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
20 2 0.03
21 24 0.40
22 8 0.13
23 6 0.10
25 5 0.08
26 2 0.03
27 13 0.22
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTCATTTAAATTTATTTTCT
Found at i:8392577 original size:21 final size:21
Alignment explanation
Indices: 8392552--8392608 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
8392542 TTTTTTTTTC
*
8392552 TCTTTTCATTTAAAGTAT-CTT
1 TCTTTACATTTAAA-TATACTT
8392573 TCTTTACATTTAAATATACTT
1 TCTTTACATTTAAATATACTT
*
8392594 T-TTCTACATATAAAT
1 TCTT-TACATTTAAAT
8392609 TTTTCTCTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 5 0.16
21 27 0.84
ACGTcount: A:0.32, C:0.14, G:0.02, T:0.53
Consensus pattern (21 bp):
TCTTTACATTTAAATATACTT
Found at i:8394285 original size:30 final size:30
Alignment explanation
Indices: 8394242--8394299 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
8394232 TTTAACAAGA
8394242 AAATGCCTCTAAAATAATAACAA-AATTAGC
1 AAATGCCTCTAAAATAATAA-AAGAATTAGC
* *
8394272 AAATGTCTTTAAAATAATAAAAGAATTA
1 AAATGCCTCTAAAATAATAAAAGAATTA
8394300 ACAATAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.55, C:0.10, G:0.07, T:0.28
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAAAAGAATTAGC
Found at i:8394403 original size:25 final size:27
Alignment explanation
Indices: 8394375--8394427 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
8394365 AATAGGGAGA
8394375 AAATAATA-TTTT-AAAAAATTCATTT
1 AAATAATATTTTTAAAAAAATTCATTT
8394400 AAATAATATTTTTAAAAAAATTCATTT
1 AAATAATATTTTTAAAAAAATTCATTT
8394427 A
1 A
8394428 GTGAATTCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 8 0.31
26 4 0.15
27 14 0.54
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (27 bp):
AAATAATATTTTTAAAAAAATTCATTT
Found at i:8394846 original size:8 final size:8
Alignment explanation
Indices: 8394833--8394876 Score: 70
Period size: 8 Copynumber: 5.5 Consensus size: 8
8394823 ACTTAAGTGT
8394833 ATAATATA
1 ATAATATA
8394841 ATAATATA
1 ATAATATA
*
8394849 TTAATATA
1 ATAATATA
*
8394857 ATAATTTA
1 ATAATATA
8394865 ATAATATA
1 ATAATATA
8394873 ATAA
1 ATAA
8394877 AACATAAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
ATAATATA
Found at i:8399864 original size:46 final size:45
Alignment explanation
Indices: 8399814--8399986 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
8399804 TGGTTGAGCA
*
8399814 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AAACG
* * *
8399860 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AA--A--CG
* *
8399907 TTCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGAGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGA-AACG
* *
8399953 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
8399987 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 28 0.26
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAACG
Found at i:8399975 original size:93 final size:93
Alignment explanation
Indices: 8399811--8399981 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
8399801 GGATGGTTGA
* *
8399811 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
8399876 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
8399904 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATG-AGAACGCCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCA-AACGCCCGAACTCGTTGAG
8399968 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
8399982 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:8400248 original size:19 final size:20
Alignment explanation
Indices: 8400211--8400248 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
8400201 ATAAGGTGGT
8400211 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
8400231 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
8400249 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:8403007 original size:12 final size:11
Alignment explanation
Indices: 8402989--8403036 Score: 68
Period size: 9 Copynumber: 4.7 Consensus size: 11
8402979 TTATCACTTA
8402989 AAATTTTATAT
1 AAATTTTATAT
8403000 AAATTTT-TA-
1 AAATTTTATAT
8403009 AAATTTTATAT
1 AAATTTTATAT
8403020 AAATTTT-TA-
1 AAATTTTATAT
8403029 AAATTTTA
1 AAATTTTA
8403037 AGTGATGATA
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
9 14 0.41
10 6 0.18
11 14 0.41
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
AAATTTTATAT
Found at i:8403011 original size:20 final size:20
Alignment explanation
Indices: 8402986--8403036 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
8402976 ACGTTATCAC
8402986 TTAAAATTTTATATAAATTT
1 TTAAAATTTTATATAAATTT
8403006 TTAAAATTTTATATAAATTT
1 TTAAAATTTTATATAAATTT
8403026 TTAAAATTTTA
1 TTAAAATTTTA
8403037 AGTGATGATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TTAAAATTTTATATAAATTT
Found at i:8407225 original size:24 final size:24
Alignment explanation
Indices: 8407198--8407261 Score: 119
Period size: 24 Copynumber: 2.7 Consensus size: 24
8407188 CGAAAGAGAG
8407198 TCCCGTTATTAGCTCTCATGAGCT
1 TCCCGTTATTAGCTCTCATGAGCT
8407222 TCCCGTTATTAGCTCTCATGAGCT
1 TCCCGTTATTAGCTCTCATGAGCT
*
8407246 TCCCGTTAATAGCTCT
1 TCCCGTTATTAGCTCT
8407262 TCGGAACATC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.17, C:0.30, G:0.16, T:0.38
Consensus pattern (24 bp):
TCCCGTTATTAGCTCTCATGAGCT
Found at i:8409525 original size:17 final size:17
Alignment explanation
Indices: 8409503--8409557 Score: 76
Period size: 17 Copynumber: 3.2 Consensus size: 17
8409493 TAGGAAGATA
*
8409503 TTATTTTGTTTTATTAT
1 TTATTTTATTTTATTAT
8409520 TTATTTTATTTTTATT-T
1 TTATTTTA-TTTTATTAT
8409537 TTATTTTATTTTATTAAT
1 TTATTTTATTTTATT-AT
8409555 TTA
1 TTA
8409558 GGTTAGGCTA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
16 7 0.21
17 16 0.47
18 11 0.32
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (17 bp):
TTATTTTATTTTATTAT
Found at i:8409527 original size:5 final size:5
Alignment explanation
Indices: 8409503--8409551 Score: 53
Period size: 5 Copynumber: 9.0 Consensus size: 5
8409493 TAGGAAGATA
*
8409503 TTATT TTGTT TTATTAT TTATT TTATTT TTATTT TTATT TTATT TTATT
1 TTATT TTATT TTA-T-T TTATT TTA-TT TTA-TT TTATT TTATT TTATT
8409552 AATTTAGGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
5 22 0.56
6 13 0.33
7 4 0.10
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:8409528 original size:22 final size:22
Alignment explanation
Indices: 8409503--8409551 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
8409493 TAGGAAGATA
*
8409503 TTATTTT-GTTTTATTATTTATT
1 TTATTTTATTTTTATT-TTTATT
8409525 TTATTTTTATTTTTA-TTTTATT
1 TTA-TTTTATTTTTATTTTTATT
8409547 TTATT
1 TTATT
8409552 AATTTAGGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 2 0.08
22 12 0.50
23 5 0.21
24 5 0.21
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (22 bp):
TTATTTTATTTTTATTTTTATT
Found at i:8418453 original size:39 final size:39
Alignment explanation
Indices: 8418404--8418485 Score: 155
Period size: 39 Copynumber: 2.1 Consensus size: 39
8418394 GTTGTATACC
8418404 ATGTTAATAAAAGATGTATTGTTAATATATATACTAACG
1 ATGTTAATAAAAGATGTATTGTTAATATATATACTAACG
*
8418443 ATGTTCATAAAAGATGTATTGTTAATATATATACTAACG
1 ATGTTAATAAAAGATGTATTGTTAATATATATACTAACG
8418482 ATGT
1 ATGT
8418486 GAATTGTGGC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.41, C:0.06, G:0.13, T:0.39
Consensus pattern (39 bp):
ATGTTAATAAAAGATGTATTGTTAATATATATACTAACG
Found at i:8421986 original size:18 final size:19
Alignment explanation
Indices: 8421963--8422005 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
8421953 ATATTTATTT
*
8421963 ATATATTATAAAT-TTTAA
1 ATATATTATAAATAATTAA
*
8421981 ATATATTTTAAATAATTAA
1 ATATATTATAAATAATTAA
8422000 ATATAT
1 ATATAT
8422006 ATTAAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATATTATAAATAATTAA
Found at i:8422001 original size:19 final size:18
Alignment explanation
Indices: 8421963--8422012 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
8421953 ATATTTATTT
* *
8421963 ATATATTATAAATTTTAA
1 ATATATTTTAAATATTAA
8421981 ATATATTTTAAATAATTAA
1 ATATATTTTAAAT-ATTAA
*
8422000 ATATATATTAAAT
1 ATATATTTTAAAT
8422013 TAAGTATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 12 0.43
19 16 0.57
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
ATATATTTTAAATATTAA
Found at i:8425852 original size:45 final size:45
Alignment explanation
Indices: 8425788--8425878 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
8425778 ATTCAAATAT
* * * *
8425788 TCATTTTATGACTAAGCTAATAATTAGGTTAACGAGAAGATTTGA
1 TCATTTTAAGACTAAGCTAATAATTAGATTAACAAAAAGATTTGA
*
8425833 TCATTTTAAGACTAGGCTAATAATTAGATTAACAAAAAGATTTGA
1 TCATTTTAAGACTAAGCTAATAATTAGATTAACAAAAAGATTTGA
8425878 T
1 T
8425879 TGATATGATA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (45 bp):
TCATTTTAAGACTAAGCTAATAATTAGATTAACAAAAAGATTTGA
Found at i:8431242 original size:54 final size:55
Alignment explanation
Indices: 8431132--8431249 Score: 159
Period size: 55 Copynumber: 2.2 Consensus size: 55
8431122 TCTAAAGTAT
* * * *
8431132 TAAAAATTAATATTTTCAATAATTTAATTTTTTTAATGTGTTTAATAATTTACAA
1 TAAAAATTAATATGTGCAATAATTTAATTTTTTAAATGTGTTTAATAATTCACAA
* *
8431187 TAAAAATTAATATGTGCAATAGTTTAATTTTTTAACATG-G-TTAATAATTCGCAA
1 TAAAAATTAATATGTGCAATAATTTAATTTTTTAA-ATGTGTTTAATAATTCACAA
8431241 TAAAAATTA
1 TAAAAATTA
8431250 CTAGATAGAT
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
54 21 0.38
55 32 0.57
56 3 0.05
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (55 bp):
TAAAAATTAATATGTGCAATAATTTAATTTTTTAAATGTGTTTAATAATTCACAA
Found at i:8431711 original size:35 final size:35
Alignment explanation
Indices: 8431672--8431742 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
8431662 ATAGTGTTTG
8431672 TACAAATTTATTCTTATTAAATAAAAATATAGTAT
1 TACAAATTTATTCTTATTAAATAAAAATATAGTAT
*
8431707 TACAAATTTATTCTTATTAAATAAAATTATAGTAT
1 TACAAATTTATTCTTATTAAATAAAAATATAGTAT
8431742 T
1 T
8431743 TATGTATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (35 bp):
TACAAATTTATTCTTATTAAATAAAAATATAGTAT
Found at i:8431801 original size:31 final size:31
Alignment explanation
Indices: 8431759--8431820 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
8431749 TTTTATTTTC
* * * *
8431759 AATAATTTTTATTATTAATAAATATTTAAAT
1 AATAATATTTATCATTAACAAATATTCAAAT
8431790 AATAATATTTATCATTAACAAATATTCAAAT
1 AATAATATTTATCATTAACAAATATTCAAAT
8431821 TAATCCACGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (31 bp):
AATAATATTTATCATTAACAAATATTCAAAT
Found at i:8437917 original size:21 final size:21
Alignment explanation
Indices: 8437885--8437925 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
8437875 GAACATTTGG
8437885 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
8437906 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
8437926 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:8443973 original size:44 final size:44
Alignment explanation
Indices: 8443922--8444009 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
8443912 AATATGTTAG
* **
8443922 AATTTTTCAAAATTGTAAAAAATAATAAAAATTTTTAAAAACTA
1 AATTTTTCAAAATTGTAAAAAATAAAAAAAAAATTTAAAAACTA
8443966 AATTTTTCAAAATTGTAAAAAATAAAAAAAAAATTTAAAAACTA
1 AATTTTTCAAAATTGTAAAAAATAAAAAAAAAATTTAAAAACTA
8444010 CAAAAAAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (44 bp):
AATTTTTCAAAATTGTAAAAAATAAAAAAAAAATTTAAAAACTA
Found at i:8444000 original size:21 final size:20
Alignment explanation
Indices: 8443974--8444027 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
8443964 TAAATTTTTC
8443974 AAAATTGTAAAAAATAAAAAA
1 AAAATT-TAAAAAATAAAAAA
* *
8443995 AAAATTTAAAAACTACAAAA
1 AAAATTTAAAAAATAAAAAA
8444015 AAAATTATAAAAA
1 AAAATT-TAAAAA
8444028 TTATTAGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 18 0.60
21 12 0.40
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.20
Consensus pattern (20 bp):
AAAATTTAAAAAATAAAAAA
Found at i:8444026 original size:10 final size:10
Alignment explanation
Indices: 8444013--8444115 Score: 54
Period size: 9 Copynumber: 10.4 Consensus size: 10
8444003 AAAACTACAA
8444013 AAAAAATTAT
1 AAAAAATTAT
8444023 -AAAAATTAT
1 AAAAAATTAT
* * *
8444032 TAGAAATTGT
1 AAAAAATTAT
*
8444042 AAAAAAATTGT
1 -AAAAAATTAT
*
8444053 -AAAAATCAT
1 AAAAAATTAT
8444062 -AAAAA-TAT
1 AAAAAATTAT
* * *
8444070 TAGAAATCAT
1 AAAAAATTAT
*
8444080 AAAAAATTGT
1 AAAAAATTAT
8444090 AAAAAAATTATTT
1 -AAAAAATTA--T
8444103 AAAAAATT-T
1 AAAAAATTAT
8444112 AAAA
1 AAAA
8444116 CTAGTAAAGG
Statistics
Matches: 72, Mismatches: 14, Indels: 15
0.71 0.14 0.15
Matches are distributed among these distances:
8 2 0.03
9 30 0.42
10 15 0.21
11 16 0.22
12 8 0.11
13 1 0.01
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:8444067 original size:18 final size:19
Alignment explanation
Indices: 8444043--8444094 Score: 72
Period size: 18 Copynumber: 2.8 Consensus size: 19
8444033 AGAAATTGTA
8444043 AAAAAATTGTAAAAATCAT
1 AAAAAATTGTAAAAATCAT
*
8444062 -AAAAATAT-TAGAAATCAT
1 AAAAAAT-TGTAAAAATCAT
8444080 AAAAAATTGTAAAAA
1 AAAAAATTGTAAAAA
8444095 AATTATTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 16 0.57
19 12 0.43
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.25
Consensus pattern (19 bp):
AAAAAATTGTAAAAATCAT
Found at i:8444083 original size:38 final size:38
Alignment explanation
Indices: 8444014--8444094 Score: 119
Period size: 37 Copynumber: 2.1 Consensus size: 38
8444004 AAACTACAAA
* **
8444014 AAAAATTATAAAAATTATTAGAAATTGTAAAAAAATTGT
1 AAAAATCATAAAAATTATTAGAAATCAT-AAAAAATTGT
8444053 AAAAATCATAAAAA-TATTAGAAATCATAAAAAATTGT
1 AAAAATCATAAAAATTATTAGAAATCATAAAAAATTGT
8444090 AAAAA
1 AAAAA
8444095 AATTATTTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
37 15 0.38
38 11 0.28
39 13 0.33
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.28
Consensus pattern (38 bp):
AAAAATCATAAAAATTATTAGAAATCATAAAAAATTGT
Found at i:8444095 original size:38 final size:40
Alignment explanation
Indices: 8444013--8444095 Score: 118
Period size: 38 Copynumber: 2.1 Consensus size: 40
8444003 AAAACTACAA
* **
8444013 AAAAAATTATAAAAATTATTAGAAATTGTAAAAAAATTGT
1 AAAAAATCATAAAAATTATTAGAAATCATAAAAAAATTGT
8444053 -AAAAATCATAAAAA-TATTAGAAATCAT-AAAAAATTGT
1 AAAAAATCATAAAAATTATTAGAAATCATAAAAAAATTGT
8444090 AAAAAA
1 AAAAAA
8444096 ATTATTTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
37 10 0.26
38 16 0.41
39 13 0.33
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (40 bp):
AAAAAATCATAAAAATTATTAGAAATCATAAAAAAATTGT
Found at i:8446871 original size:58 final size:58
Alignment explanation
Indices: 8446773--8446883 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 58
8446763 CCTAACATAT
* * * *
8446773 TTATTTTTAGAATTTTTAGAAGATTTATTATACAACGGAAATAACACAAAACACATTC
1 TTATTTTTAGAATTTTTAGAAGACTAATTAAACAACGGAAAGAACACAAAACACATTC
* * *
8446831 TTATTTTTAGAATTTTTGGAGGACTAATTAAACAAGGGAAAGAACACAAAACA
1 TTATTTTTAGAATTTTTAGAAGACTAATTAAACAACGGAAAGAACACAAAACA
8446884 TATAAAATTG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
58 46 1.00
ACGTcount: A:0.44, C:0.11, G:0.13, T:0.32
Consensus pattern (58 bp):
TTATTTTTAGAATTTTTAGAAGACTAATTAAACAACGGAAAGAACACAAAACACATTC
Found at i:8455027 original size:4 final size:4
Alignment explanation
Indices: 8455011--8455045 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
8455001 AAACATATAT
*
8455011 ATAA ATAT A-AA ATAA ATAA ATAA ATAA ATAA ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
8455046 CCACAGTCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 2 0.07
4 26 0.93
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:8458923 original size:3 final size:3
Alignment explanation
Indices: 8458917--8458955 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
8458907 ATAAGAGTAG
*
8458917 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8458956 CAAAACAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8466739 original size:223 final size:223
Alignment explanation
Indices: 8466351--8466796 Score: 795
Period size: 223 Copynumber: 2.0 Consensus size: 223
8466341 ACAGAAAGAA
* *
8466351 ACCCAAAGAACTTCTAAGGAAATTGAATGGAGATCTTTAGGCTTGAAGTAGATCTTGTTTCCGAG
1 ACCCAAAGAACTTCTAAGGAAATTGAATGGAGATCTTTAGGCTTGAAGTAGATCCTGCTTCCGAG
* *
8466416 CTAATTCCGTTGGCTATCTTCGAGTATTCTCTGCCTTCTACTCTCCGTCCCCTATTTGATCCTCT
66 CTAATTCCGTTGGCTATCTTCAAGTATTCTCTGCCTTCTACTCTCCGTCCCCCATTTGATCCTCT
*
8466481 TCTCCTTTGTTTAAGTAGACTTTGGAATGCCCAAAATATTCAAAAATTAGCCTTTTCTTAGTAGA
131 TCTCCTTTGTTTAAGTAGACTTTGGAATGCCCAAAATATTCAAAAATTAGCCTTTTCCTAGTAGA
*
8466546 ATTAAAATAGGTTCTGACAGGGACACGG
196 ATTAAAATAGGTTCCGACAGGGACACGG
8466574 ACCCAAAGAACTTCTAAGGAAATTGAATGGAGAT-TTTCAGGCTTGAAGTAGATCCTGCTTCCGA
1 ACCCAAAGAACTTCTAAGGAAATTGAATGGAGATCTTT-AGGCTTGAAGTAGATCCTGCTTCCGA
* *
8466638 GCTGATTCCGTTGGCTGTCTTCAAGTATTCTCTGCCTTCTACTCTCCGTCCCCCATTTGATCCTC
65 GCTAATTCCGTTGGCTATCTTCAAGTATTCTCTGCCTTCTACTCTCCGTCCCCCATTTGATCCTC
8466703 TTCTCCTTTGTTTAAGTAGACTTTGGAATGCCCAAAATATTCAAAAATTAGCCTTTTCCTAGTAG
130 TTCTCCTTTGTTTAAGTAGACTTTGGAATGCCCAAAATATTCAAAAATTAGCCTTTTCCTAGTAG
*
8466768 AATTAAAATAGGTTCCGACTGGGACACGG
195 AATTAAAATAGGTTCCGACAGGGACACGG
8466797 CAGTGTGACA
Statistics
Matches: 213, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
222 3 0.01
223 210 0.99
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (223 bp):
ACCCAAAGAACTTCTAAGGAAATTGAATGGAGATCTTTAGGCTTGAAGTAGATCCTGCTTCCGAG
CTAATTCCGTTGGCTATCTTCAAGTATTCTCTGCCTTCTACTCTCCGTCCCCCATTTGATCCTCT
TCTCCTTTGTTTAAGTAGACTTTGGAATGCCCAAAATATTCAAAAATTAGCCTTTTCCTAGTAGA
ATTAAAATAGGTTCCGACAGGGACACGG
Found at i:8467289 original size:105 final size:105
Alignment explanation
Indices: 8467167--8467529 Score: 390
Period size: 105 Copynumber: 3.5 Consensus size: 105
8467157 TAACGAACTA
* * *
8467167 TTTAGGAGTTGCAATCTTAAATTAACTAACTCAAATAAATTTAGGTTGCGATCTTAAATCAACTA
1 TTTAGAAGTTGCAATCTTAAATTAACTAACTCAAAGAAACTTAGGTTGCGATCTTAAATCAACTA
* * *
8467232 ACCTTTGTAATATCAGCTGTGAACGTAGGTTAACGAGTTG
66 ACCTTTGTAATATCAGCTGTGAACGTAGGTCAACAAGCTG
*
8467272 TTTCA-AAGTTGCAATCTTAAA-TATGCTAACTCAAAGAAACTTAGGTTGCGATCTTAAATCAAC
1 TTT-AGAAGTTGCAATCTTAAATTA-ACTAACTCAAAGAAACTTAGGTTGCGATCTTAAATCAAC
* * **
8467335 GAACCTTTGTAATATTAGCTGTGAACGTAGGTCAGTAAGCTG
64 TAACCTTTGTAATATCAGCTGTGAACGTAGGTCAACAAGCTG
** * * * *
8467377 TTTAGAAGTTGTGATATTAAATCT-ACTAACTCAAAGAAACTTAGGTTGCAATCTAAAATCAGCT
1 TTTAGAAGTTGCAATCTTAAAT-TAACTAACTCAAAGAAACTTAGGTTGCGATCTTAAATCAACT
* * * * * * *
8467441 AACCTTTATAATAGCAGTTGTGAACGTGGGTCATCGAGCTA
65 AACCTTTGTAATATCAGCTGTGAACGTAGGTCAACAAGCTG
* * ** ** * *
8467482 TTTAGGATTTGTGATCTTAAATTTGCTAACTCGAAGAAACTTTGGTTG
1 TTTAGAAGTTGCAATCTTAAATTAACTAACTCAAAGAAACTTAGGTTG
8467530 TCCATATTTG
Statistics
Matches: 218, Mismatches: 34, Indels: 12
0.83 0.13 0.05
Matches are distributed among these distances:
104 4 0.02
105 212 0.97
106 1 0.00
107 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.34
Consensus pattern (105 bp):
TTTAGAAGTTGCAATCTTAAATTAACTAACTCAAAGAAACTTAGGTTGCGATCTTAAATCAACTA
ACCTTTGTAATATCAGCTGTGAACGTAGGTCAACAAGCTG
Found at i:8469132 original size:196 final size:196
Alignment explanation
Indices: 8468798--8469191 Score: 725
Period size: 196 Copynumber: 2.0 Consensus size: 196
8468788 TCGATACCAA
*
8468798 ATGTAAAAATACCGTTACTTGTGTTCAAAAATGGTAAAAATTAATTTTTAAAAGATGCACTTATG
1 ATGTAAAAATACCGTTACTTGTGTTCAAAAATGGTAAAAACTAATTTTTAAAAGATGCACTTATG
8468863 CTCAAAACTTGCCTAAACTCAAATAACATACCTAAACATGAAAAAAGGCATGCAAATCATCATTT
66 CTCAAAACTTGCCTAAACTCAAATAACATACCTAAACATGAAAAAAGGCATGCAAATCATCATTT
* *
8468928 AAATATCTTATCCATGTACAGCTCTATTCAGTACATCAAAATATAAGCCAAATATATATCCTTAA
131 AAATATCTTATCCATGTACAACTCTATGCAGTACATCAAAATATAAGCCAAATATATATCCTTAA
8468993 G
196 G
* *
8468994 ATGTAAAAATATCGTTACTTGTGTTCAAAAATGGTAAAAACTAATTTTTAAAAGATGCATTTATG
1 ATGTAAAAATACCGTTACTTGTGTTCAAAAATGGTAAAAACTAATTTTTAAAAGATGCACTTATG
8469059 CTCAAAACTTGCCTAAACTCAAATAACATACCTAAACATGAAAAAAGGCATGCAAATCATCATTT
66 CTCAAAACTTGCCTAAACTCAAATAACATACCTAAACATGAAAAAAGGCATGCAAATCATCATTT
* *
8469124 ATATATCTTATCCATGTACAACTCTATGCAGTACATCAAAATCTAAGCCAAATATATATCCTTAA
131 AAATATCTTATCCATGTACAACTCTATGCAGTACATCAAAATATAAGCCAAATATATATCCTTAA
8469189 G
196 G
8469190 AT
1 AT
8469192 CAACAAACCT
Statistics
Matches: 191, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
196 191 1.00
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.30
Consensus pattern (196 bp):
ATGTAAAAATACCGTTACTTGTGTTCAAAAATGGTAAAAACTAATTTTTAAAAGATGCACTTATG
CTCAAAACTTGCCTAAACTCAAATAACATACCTAAACATGAAAAAAGGCATGCAAATCATCATTT
AAATATCTTATCCATGTACAACTCTATGCAGTACATCAAAATATAAGCCAAATATATATCCTTAA
G
Found at i:8476967 original size:13 final size:13
Alignment explanation
Indices: 8476949--8477061 Score: 115
Period size: 13 Copynumber: 9.6 Consensus size: 13
8476939 AAATATCTTT
8476949 ACTCCACTAAACC
1 ACTCCACTAAACC
8476962 ACT-C-C--AACC
1 ACTCCACTAAACC
8476971 ACTCCACTAAACC
1 ACTCCACTAAACC
* *
8476984 ATTACACTAAACC
1 ACTCCACTAAACC
8476997 ACTCCACTAAACC
1 ACTCCACTAAACC
8477010 AC-CC-C--AACC
1 ACTCCACTAAACC
*
8477019 ACCCCACTAAACC
1 ACTCCACTAAACC
8477032 ACTCCACTAAACC
1 ACTCCACTAAACC
8477045 A--CC-CT-AACC
1 ACTCCACTAAACC
8477054 ACTCCACT
1 ACTCCACT
8477062 TGCCTACAAA
Statistics
Matches: 84, Mismatches: 5, Indels: 23
0.75 0.04 0.21
Matches are distributed among these distances:
9 18 0.21
10 5 0.06
11 8 0.10
12 5 0.06
13 48 0.57
ACGTcount: A:0.37, C:0.49, G:0.00, T:0.14
Consensus pattern (13 bp):
ACTCCACTAAACC
Found at i:8477018 original size:48 final size:48
Alignment explanation
Indices: 8476949--8477046 Score: 160
Period size: 48 Copynumber: 2.0 Consensus size: 48
8476939 AAATATCTTT
* * *
8476949 ACTCCACTAAACCACTCCAACCACTCCACTAAACCATTACACTAAACC
1 ACTCCACTAAACCACCCCAACCACCCCACTAAACCACTACACTAAACC
*
8476997 ACTCCACTAAACCACCCCAACCACCCCACTAAACCACTCCACTAAACC
1 ACTCCACTAAACCACCCCAACCACCCCACTAAACCACTACACTAAACC
8477045 AC
1 AC
8477047 CCTAACCACT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.39, C:0.48, G:0.00, T:0.13
Consensus pattern (48 bp):
ACTCCACTAAACCACCCCAACCACCCCACTAAACCACTACACTAAACC
Found at i:8477061 original size:35 final size:35
Alignment explanation
Indices: 8476949--8477061 Score: 131
Period size: 35 Copynumber: 3.2 Consensus size: 35
8476939 AAATATCTTT
* **
8476949 ACTCCACTAAACCACTCCAACCACTCCA--CTAAACC
1 ACTCCACTAAACCACTCC-ACTAAACCACCCT-AACC
* * *
8476984 ATTACACTAAACCACTCCACTAAACCACCCCAACC
1 ACTCCACTAAACCACTCCACTAAACCACCCTAACC
*
8477019 ACCCCACTAAACCACTCCACTAAACCACCCTAACC
1 ACTCCACTAAACCACTCCACTAAACCACCCTAACC
8477054 ACTCCACT
1 ACTCCACT
8477062 TGCCTACAAA
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
34 6 0.09
35 58 0.89
36 1 0.02
ACGTcount: A:0.37, C:0.49, G:0.00, T:0.14
Consensus pattern (35 bp):
ACTCCACTAAACCACTCCACTAAACCACCCTAACC
Found at i:8477559 original size:23 final size:23
Alignment explanation
Indices: 8477475--8477559 Score: 55
Period size: 23 Copynumber: 3.6 Consensus size: 23
8477465 CTAATACCAC
* *
8477475 TATTATCATCATTATTACTATTA-
1 TATTATTAT-ATTTTTACTATTAT
* * *
8477498 TATTATAATACCTTTTCATTATTAT
1 TATTATTATA--TTTTTACTATTAT
* * * *
8477523 AACTATTGTGTTTTTACTATTAT
1 TATTATTATATTTTTACTATTAT
8477546 TATTATTATATTTT
1 TATTATTATATTTT
8477560 CCTTTTTTTG
Statistics
Matches: 44, Mismatches: 15, Indels: 6
0.68 0.23 0.09
Matches are distributed among these distances:
22 1 0.02
23 29 0.66
24 9 0.20
25 5 0.11
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.58
Consensus pattern (23 bp):
TATTATTATATTTTTACTATTAT
Found at i:8483590 original size:3 final size:3
Alignment explanation
Indices: 8483582--8483623 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
8483572 TGTTGGTAGA
8483582 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8483624 GCTCACTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:8487913 original size:105 final size:103
Alignment explanation
Indices: 8487734--8488007 Score: 308
Period size: 105 Copynumber: 2.6 Consensus size: 103
8487724 AATTGACGGA
* *
8487734 TAAGACCATGGTTGGACCATGGCA--A-AGTGTTAAATGTAAGACCATAGCTGGGCTATGGCATT
1 TAAGACCATGGTTGGACCATGGCAGTATA-TGTTAAATGTAAGACCATAACTGGGCTATGGCATC
8487796 TCAGTGAAAAGACCATAACT-AGGTTATGGCACATTGT-ACG
65 TCAGTGAAAAGACCATAACTGA-GTTAT-G-ACATTGTAACG
* * *
8487836 TAAGACCATGGTTGGACCATGGTAGTATATGTATAAGTGTAAGACCATAATTGGGCTATGGCATC
1 TAAGACCATGGTTGGACCATGGCAGTATATGT-TAAATGTAAGACCATAACTGGGCTATGGCATC
* * *
8487901 -CTGATGATAAGACTATAACTGAGTTATGACATTGTGAACG
65 TCAG-TGAAAAGACCATAACTGAGTTATGACATTGT-AACG
* * * *
8487941 TAAGACCATGGTTGGACCATGGCAGTATATGTGTGTACATGTAAGACCATAGCTAGGCTATAGCA
1 TAAGACCATGGTTGGACCATGGCAGTATA--TGT-TAAATGTAAGACCATAACTGGGCTATGGCA
8488006 TC
63 TC
8488008 GTGATTAAGT
Statistics
Matches: 146, Mismatches: 16, Indels: 15
0.82 0.09 0.08
Matches are distributed among these distances:
102 23 0.16
103 7 0.05
104 7 0.05
105 79 0.54
106 1 0.01
107 29 0.20
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (103 bp):
TAAGACCATGGTTGGACCATGGCAGTATATGTTAAATGTAAGACCATAACTGGGCTATGGCATCT
CAGTGAAAAGACCATAACTGAGTTATGACATTGTAACG
Found at i:8489920 original size:37 final size:37
Alignment explanation
Indices: 8489879--8489968 Score: 96
Period size: 37 Copynumber: 2.5 Consensus size: 37
8489869 TCACATTCTT
* *
8489879 AATATTTTAAGAATAAAT-ATATA-AATTATAAATTATA
1 AATATTTTAATAATAAATGATATATAA-TATAAAATA-A
* * *
8489916 AATA-TCTAATAATAAATGTTTTATAATATAAAATAA
1 AATATTTTAATAATAAATGATATATAATATAAAATAA
8489952 AATATTTTAATAATAAA
1 AATATTTTAATAATAAA
8489969 AACATGAATA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
36 16 0.36
37 26 0.59
38 2 0.05
ACGTcount: A:0.57, C:0.01, G:0.02, T:0.40
Consensus pattern (37 bp):
AATATTTTAATAATAAATGATATATAATATAAAATAA
Found at i:8489959 original size:22 final size:22
Alignment explanation
Indices: 8489929--8489970 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
8489919 ATCTAATAAT
*
8489929 AAATGTTTT-ATAATATAAAATA
1 AAATATTTTAATAATA-AAAATA
8489951 AAATATTTTAATAATAAAAA
1 AAATATTTTAATAATAAAAA
8489971 CATGAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
AAATATTTTAATAATAAAAATA
Found at i:8490215 original size:16 final size:15
Alignment explanation
Indices: 8490195--8490243 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
8490185 TTAAAATGGT
8490195 AATTTTTTAATTTAA
1 AATTTTTTAATTTAA
*
8490210 ATATTTTATAATTTATA
1 A-ATTTTTTAATTTA-A
* *
8490227 AAATTTTAAATTTAA
1 AATTTTTTAATTTAA
8490242 AA
1 AA
8490244 ATTATACTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 4 0.14
16 22 0.79
17 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
AATTTTTTAATTTAA
Found at i:8516063 original size:17 final size:17
Alignment explanation
Indices: 8516031--8516064 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8516021 CAATTTCCTT
*
8516031 ATTGTTATTCTCAATTA
1 ATTGTTATTATCAATTA
*
8516048 ATTGTTATTATTAATTA
1 ATTGTTATTATCAATTA
8516065 TTTATTATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (17 bp):
ATTGTTATTATCAATTA
Found at i:8526932 original size:40 final size:40
Alignment explanation
Indices: 8526887--8527152 Score: 315
Period size: 40 Copynumber: 6.7 Consensus size: 40
8526877 CACCAACACA
* * * * *
8526887 AAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACG
* * * * * *
8526927 AAGCCTGC-GGACCTTAAGTCCGAATATAGTACCAGCACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACG
* *
8526966 AAGCCTGCGGATC-TTAAGTCCGGATA-AATTCCAGCACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACG
* *
8527004 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTTCAGCACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACG
* *
8527044 AAGCCTGTGGGTCTTTAAGCCCGGATATAATTCCAGCACA
1 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACG
* * *
8527084 AAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA-T
1 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACG
8527123 ATAGCCTGCGGGTCTTTAAGCCCGGATATA
1 A-AGCCTGCGGGTCTTTAAGCCCGGATATA
8527153 CATCAAATAT
Statistics
Matches: 201, Mismatches: 21, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
38 22 0.11
39 60 0.30
40 119 0.59
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (40 bp):
AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACG
Found at i:8547244 original size:26 final size:27
Alignment explanation
Indices: 8547193--8547244 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
8547183 TTTCCTCATA
*
8547193 TTTTTGAATAACATAAAGAACTATGAG
1 TTTTTGAATAACATAAAGAACAATGAG
*
8547220 TTTTTGAATAACATAAA-ATCAATGA
1 TTTTTGAATAACATAAAGAACAATGA
8547245 TTATGGTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.35
Consensus pattern (27 bp):
TTTTTGAATAACATAAAGAACAATGAG
Done.