Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 292 of 373
Found at i:99093451 original size:26 final size:26
Alignment explanation
Indices: 99093396--99093453 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
99093386 AGTTATTATT
* * **
99093396 ATTGTTAGGTAAAAATCCTTATTATT
1 ATTGTTAGGTAAAAAACATTATTAGG
99093422 ATTGTTA-GTAAAAAACTATTATTAGG
1 ATTGTTAGGTAAAAAAC-ATTATTAGG
99093448 ATTGTT
1 ATTGTT
99093454 GGTTATTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 8 0.30
26 19 0.70
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (26 bp):
ATTGTTAGGTAAAAAACATTATTAGG
Found at i:99093499 original size:39 final size:37
Alignment explanation
Indices: 99093414--99093505 Score: 107
Period size: 39 Copynumber: 2.4 Consensus size: 37
99093404 GTAAAAATCC
99093414 TTATTATTATTGTTAGTAAAAAACTATTATTAGGATTG
1 TTATTATTATTGTTAGTAAAAAACTATTATTA-GATTG
*
99093452 TTGGTTATTATTGTTAGTAAAAAATCCTAATTATT-G-TTAG
1 TT-ATTATTATTGTTAGTAAAAAA--CT-ATTATTAGATT-G
99093492 TTATTATTATTGTT
1 TTATTATTATTGTT
99093506 GATTTATATT
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
38 2 0.04
39 33 0.70
40 4 0.09
41 2 0.04
42 6 0.13
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.51
Consensus pattern (37 bp):
TTATTATTATTGTTAGTAAAAAACTATTATTAGATTG
Found at i:99097889 original size:18 final size:18
Alignment explanation
Indices: 99097836--99097889 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 18
99097826 TCTGGCTGTG
* *
99097836 GCTCGGGCTCGGGCTCAA
1 GCTCAGGCTCGGGCTCTA
* *
99097854 GCTCAGGCTTGGGATCTA
1 GCTCAGGCTCGGGCTCTA
**
99097872 GCTGTGGCTCGGGCTCTA
1 GCTCAGGCTCGGGCTCTA
99097890 TATCCGTCAC
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.11, C:0.28, G:0.37, T:0.24
Consensus pattern (18 bp):
GCTCAGGCTCGGGCTCTA
Found at i:99099702 original size:29 final size:30
Alignment explanation
Indices: 99099626--99099703 Score: 76
Period size: 29 Copynumber: 2.7 Consensus size: 30
99099616 TATCCAACTC
*
99099626 AAATATAA-ATAT-TATTATTATTATTTTA
1 AAATATAATATATATAATATTATTATTTTA
*
99099654 AAATGATAATA-AGTAAAATATT-TT-TGTTTA
1 AAAT-ATAATATA-TATAATATTATTAT-TTTA
99099684 AAATATAATATATATAATAT
1 AAATATAATATATATAATAT
99099704 ACCTAGCATG
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
28 4 0.10
29 19 0.46
30 13 0.32
31 5 0.12
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (30 bp):
AAATATAATATATATAATATTATTATTTTA
Found at i:99100148 original size:26 final size:26
Alignment explanation
Indices: 99100100--99100151 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
99100090 TTTTTTAAAA
* ** *
99100100 TATATTATTTTTGTATTTTATTTTTT
1 TATATTATTTTAGTACATAATTTTTT
99100126 TATATTATTTTAGTACATAATTTTTT
1 TATATTATTTTAGTACATAATTTTTT
99100152 AAATGTATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (26 bp):
TATATTATTTTAGTACATAATTTTTT
Found at i:99100185 original size:13 final size:12
Alignment explanation
Indices: 99100100--99100181 Score: 58
Period size: 13 Copynumber: 6.6 Consensus size: 12
99100090 TTTTTTAAAA
99100100 TATATTATTTTT
1 TATATTATTTTT
*
99100112 GTATTTTATTTTTT
1 -TATATTA-TTTTT
*
99100126 TATATTATTTTAG
1 TATATTATTTT-T
* *
99100139 TACATAATTTTT
1 TATATTATTTTT
* *
99100151 TAAATGTATTATT
1 TATAT-TATTTTT
*
99100164 TA-AGTATTTTT
1 TATATTATTTTT
99100175 TATATTA
1 TATATTA
99100182 ATTTAATAAA
Statistics
Matches: 53, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
11 8 0.15
12 12 0.23
13 28 0.53
14 5 0.09
ACGTcount: A:0.29, C:0.01, G:0.05, T:0.65
Consensus pattern (12 bp):
TATATTATTTTT
Found at i:99100267 original size:151 final size:149
Alignment explanation
Indices: 99099901--99100290 Score: 635
Period size: 150 Copynumber: 2.6 Consensus size: 149
99099891 TTTTTCAGTG
99099901 ATTTTGAC-CATTTGTTGGTATTTTTTTATTTTTGGATTTTATTTTTTAAAATATATTATTTTCG
1 ATTTTGACAC-TTTGTTGGTATTTTTTTATTTTTGGATTTTATTTTTTAAAATATATTATTTTCG
*
99099965 TATTTTATTTTTTATATTATTTTAGTACATAATGTGTAATGTATTATTTAAGTGTTTTTTTATAT
65 TATTTTATTTTTTATATTATTTTAGTACATAATGTGTAATGTATTATTTAAGTGATTTTTTATAT
*
99100030 TAATTTAATAAATAACCCTG
130 TAATTTAATAAATAACCCTA
* * *
99100050 ATTTT-AGCACTTTGTTGGTA-TTTTTTATTTTCGAATTTTATTTTTTAAAATATATTATTTTTG
1 ATTTTGA-CACTTTGTTGGTATTTTTTTATTTTTGGATTTTATTTTTTAAAATATATTATTTTCG
* *
99100113 TATTTTATTTTTTTATATTATTTTAGTACATAATTTTTTAAATGTATTATTTAAGT-ATTTTTTA
65 TATTTTA-TTTTTTATATTATTTTAGTACATAA-TGTGT-AATGTATTATTTAAGTGATTTTTTA
99100177 TATTAATTTAATAAATAACCCTA
127 TATTAATTTAATAAATAACCCTA
*
99100200 ATTTTGACACTTTGTTGGTATTTTTTTATTTTTGGATTTTATTTTTTAAAATATACTATTTTCGT
1 ATTTTGACACTTTGTTGGTATTTTTTTATTTTTGGATTTTATTTTTTAAAATATATTATTTTCGT
99100265 ATTTTATTTTTTATATTATTTTAGTA
66 ATTTTATTTTTTATATTATTTTAGTA
99100291 AAAAAACCAC
Statistics
Matches: 223, Mismatches: 11, Indels: 13
0.90 0.04 0.05
Matches are distributed among these distances:
148 48 0.22
149 41 0.18
150 71 0.32
151 63 0.28
ACGTcount: A:0.27, C:0.05, G:0.08, T:0.60
Consensus pattern (149 bp):
ATTTTGACACTTTGTTGGTATTTTTTTATTTTTGGATTTTATTTTTTAAAATATATTATTTTCGT
ATTTTATTTTTTATATTATTTTAGTACATAATGTGTAATGTATTATTTAAGTGATTTTTTATATT
AATTTAATAAATAACCCTA
Found at i:99100366 original size:16 final size:16
Alignment explanation
Indices: 99100325--99100367 Score: 68
Period size: 17 Copynumber: 2.6 Consensus size: 16
99100315 CCAAAAAAGT
*
99100325 TTTTTTTCGTATTTTA
1 TTTTTTTCATATTTTA
99100341 TTTCTTTTCATATTTTA
1 TTT-TTTTCATATTTTA
99100358 TTTTTTTCAT
1 TTTTTTTCAT
99100368 TAAAATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 10 0.40
17 15 0.60
ACGTcount: A:0.14, C:0.09, G:0.02, T:0.74
Consensus pattern (16 bp):
TTTTTTTCATATTTTA
Found at i:99100914 original size:3 final size:3
Alignment explanation
Indices: 99100900--99100955 Score: 73
Period size: 3 Copynumber: 19.7 Consensus size: 3
99100890 GTGCCGCCTC
* *
99100900 CTT CTC CTT CTT CTT CTT C-T CTT CTT -TT CTT CTT CTC CTT CTT -TT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
99100945 CTT CTT CTT CT
1 CTT CTT CTT CT
99100956 CCTTTTATTC
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
2 6 0.13
3 40 0.87
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:99100924 original size:11 final size:11
Alignment explanation
Indices: 99100908--99100952 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
99100898 TCCTTCTCCT
99100908 TCTTCTTCTTC
1 TCTTCTTCTTC
99100919 TCTTCTT-TTC
1 TCTTCTTCTTC
*
99100929 TTCTTCTCCTTC
1 -TCTTCTTCTTC
*
99100941 TTTTCTTCTTC
1 TCTTCTTCTTC
99100952 T
1 T
99100953 TCTCCTTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
10 3 0.10
11 23 0.79
12 3 0.10
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (11 bp):
TCTTCTTCTTC
Found at i:99100932 original size:28 final size:28
Alignment explanation
Indices: 99100900--99100953 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
99100890 GTGCCGCCTC
*
99100900 CTTCTCCTTCTTCTTCTTC-TCTTCTTTT
1 CTTCTCCTCCTTCTT-TTCTTCTTCTTTT
*
99100928 CTTCTTCTCCTTCTTTTCTTCTTCTT
1 CTTCTCCTCCTTCTTTTCTTCTTCTT
99100954 CTCCTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 3 0.13
28 20 0.87
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (28 bp):
CTTCTCCTCCTTCTTTTCTTCTTCTTTT
Found at i:99100942 original size:17 final size:17
Alignment explanation
Indices: 99100900--99100952 Score: 85
Period size: 17 Copynumber: 3.3 Consensus size: 17
99100890 GTGCCGCCTC
99100900 CTTCTCCTTC--TTCTT
1 CTTCTCCTTCTTTTCTT
99100915 CTTCT-CTTCTTTTCTT
1 CTTCTCCTTCTTTTCTT
99100931 CTTCTCCTTCTTTTCTT
1 CTTCTCCTTCTTTTCTT
99100948 CTTCT
1 CTTCT
99100953 TCTCCTTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.11
15 5 0.14
16 10 0.29
17 16 0.46
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (17 bp):
CTTCTCCTTCTTTTCTT
Found at i:99100960 original size:17 final size:17
Alignment explanation
Indices: 99100900--99100961 Score: 81
Period size: 17 Copynumber: 3.6 Consensus size: 17
99100890 GTGCCGCCTC
99100900 CTTCTCCTTCTTCTTCTT
1 CTTCTCCTT-TTCTTCTT
*
99100918 C-TCTTCTTTTCTTCTT
1 CTTCTCCTTTTCTTCTT
* *
99100934 CTCCTTCTTTTCTTCTT
1 CTTCTCCTTTTCTTCTT
99100951 CTTCTCCTTTT
1 CTTCTCCTTTT
99100962 ATTCCCGAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
16 9 0.23
17 29 0.74
18 1 0.03
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (17 bp):
CTTCTCCTTTTCTTCTT
Found at i:99101131 original size:18 final size:19
Alignment explanation
Indices: 99101098--99101133 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
99101088 CCTTCCATCC
*
99101098 TTTTTTTTTTAGATTTTTG
1 TTTTTTTTTTACATTTTTG
99101117 TTTTTTTTTT-CATTTTT
1 TTTTTTTTTTACATTTTT
99101134 AACTTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.08, C:0.03, G:0.06, T:0.83
Consensus pattern (19 bp):
TTTTTTTTTTACATTTTTG
Found at i:99104299 original size:27 final size:29
Alignment explanation
Indices: 99104269--99104325 Score: 73
Period size: 27 Copynumber: 2.0 Consensus size: 29
99104259 AGAGTTTTTT
* *
99104269 TTTTTTTTTAAA-AACAAAA-GGTTAAAA
1 TTTTTCTTTAAACAAAAAAATGGTTAAAA
*
99104296 TTTTTCTTTAAACAAAAAAATGGTTTAAA
1 TTTTTCTTTAAACAAAAAAATGGTTAAAA
99104325 T
1 T
99104326 GATAAAAATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 11 0.44
28 6 0.24
29 8 0.32
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.42
Consensus pattern (29 bp):
TTTTTCTTTAAACAAAAAAATGGTTAAAA
Found at i:99106166 original size:28 final size:28
Alignment explanation
Indices: 99106126--99106182 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
99106116 GACAGCTTGG
*
99106126 CGACTCCATTGGGGACCAATAAAAGAGT
1 CGACTCCACTGGGGACCAATAAAAGAGT
*
99106154 CGACTCCACTGGGGACCAATAAGAGAGT
1 CGACTCCACTGGGGACCAATAAAAGAGT
99106182 C
1 C
99106183 AAGCCGTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.25, G:0.26, T:0.16
Consensus pattern (28 bp):
CGACTCCACTGGGGACCAATAAAAGAGT
Found at i:99111880 original size:88 final size:88
Alignment explanation
Indices: 99111726--99112576 Score: 1170
Period size: 88 Copynumber: 9.7 Consensus size: 88
99111716 TGAATTCACT
* * *
99111726 AGCCTTAACCCCCTAAGCAGTATGGAAACAGACTGGAAATTACAGATCTTATCTCCTTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
*
99111791 AGTAGAGCAGATCGAAGACGGTG
66 AGTGGAGCAGATCGAAGACGGTG
* * *
99111814 AGCCTTAACCCCGTAAGCAGTAGGGAAATAGGCTGGAAATTACAGATCTTATCTCCCTAAGAAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* * *
99111879 AGTGGAACAAATCAAAGACGGTG
66 AGTGGAGCAGATCGAAGACGGTG
* * *
99111902 AGCCTTAACCCCTTAAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCTCCCCAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
**
99111967 AGTGGAATAGATCGAAGACGGTG
66 AGTGGAGCAGATCGAAGACGGTG
* * *
99111990 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTCATCTCCCTAAGAAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
*
99112055 AGTGGAGCAGATCGAAGACGATG
66 AGTGGAGCAGATCGAAGACGGTG
* * ** **
99112078 AGCCTTAACCCCCTAAGTAGTAGAGAAACAGATTGGAAATTACAGATCTTATCTTTCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
*
99112143 AGTGGAGCAGATCGAAGATGGTG
66 AGTGGAGCAGATCGAAGACGGTG
* * *
99112166 AGCCTTAACCCTCTAAGCAGTAGGGAAACAGGCCGGAAATTACAGATCTTATCTCCCCAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* * *
99112231 AGTAGAACAAATCGAAGACGGTG
66 AGTGGAGCAGATCGAAGACGGTG
* * * * * *
99112254 AGCCTTAACCCCCTAAGTAGTATGGAGATAGGCTGGAAATTACAAATCTCATCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
*
99112319 AGTGGAGCAGATCAAAGACGGTG
66 AGTGGAGCAGATCGAAGACGGTG
* * *
99112342 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCTCTCTAA-CGGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
** *
99112406 AGTGGAGTGGATCGAAGACAGTG
66 AGTGGAGCAGATCGAAGACGGTG
* * * *
99112429 AGCCTTATCCCCCTAAGCAGTAGGGAAACAGGCT-GAAGATTATAGATCTCATCTCCTTAAGCAG
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAA-ATTACAGATCTTATCTCCCTAAGCAG
*
99112493 TAGTGGAGCGGATCGAAGACGGTG
65 TAGTGGAGCAGATCGAAGACGGTG
* * *
99112517 AGCCTTATCCCTCTAAGTAGTAGGGAAACAGGCT-GAAGATTACA-AGTCTTATCTCCCTAA
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAA-ATTACAGA-TCTTATCTCCCTAA
99112577 AGTTACAGCG
Statistics
Matches: 672, Mismatches: 88, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
86 3 0.00
87 74 0.11
88 595 0.89
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (88 bp):
AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCGAAGACGGTG
Found at i:99111966 original size:44 final size:44
Alignment explanation
Indices: 99111916--99112056 Score: 112
Period size: 44 Copynumber: 3.2 Consensus size: 44
99111906 TTAACCCCTT
99111916 AAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCTCCCC
1 AAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCTCCCC
* * * * * * *
99111960 AAGCAGTAGTGG-AATA-GATCG-AA-GACGGTGAGCCTTAAC-CCCC
1 AAGCAGTAG-GGAAACAGGCTAGAAATTAC--AGA-TCTTATCTCCCC
* *
99112003 TAAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTCATCTCCCT
1 -AAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCTCCCC
*
99112048 AAGAAGTAG
1 AAGCAGTAG
99112057 TGGAGCAGAT
Statistics
Matches: 70, Mismatches: 17, Indels: 20
0.65 0.16 0.19
Matches are distributed among these distances:
41 2 0.03
42 2 0.03
43 11 0.16
44 41 0.59
45 10 0.14
46 2 0.03
47 2 0.03
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.19
Consensus pattern (44 bp):
AAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCTCCCC
Found at i:99112110 original size:44 final size:44
Alignment explanation
Indices: 99111975--99112110 Score: 98
Period size: 44 Copynumber: 3.1 Consensus size: 44
99111965 GTAGTGGAAT
* * *
99111975 AGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAAC
1 AGATCGAAGACGATGAGCCTTAACCCCCTAAGAAGTAGAGAAAC
* * * * * * * * * *
99112019 AGGCTAGAAATTAC-A-GA-TCTCATCTCCCTAAGAAGTAGTGGAGC
1 A-GATCG-AA-GACGATGAGCCTTAACCCCCTAAGAAGTAGAGAAAC
*
99112063 AGATCGAAGACGATGAGCCTTAACCCCCTAAGTAGTAGAGAAAC
1 AGATCGAAGACGATGAGCCTTAACCCCCTAAGAAGTAGAGAAAC
99112107 AGAT
1 AGAT
99112111 TGGAAATTAC
Statistics
Matches: 63, Mismatches: 23, Indels: 12
0.64 0.23 0.12
Matches are distributed among these distances:
41 2 0.03
42 3 0.05
43 5 0.08
44 44 0.70
45 5 0.08
46 2 0.03
47 2 0.03
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (44 bp):
AGATCGAAGACGATGAGCCTTAACCCCCTAAGAAGTAGAGAAAC
Found at i:99112181 original size:44 final size:43
Alignment explanation
Indices: 99112046--99112188 Score: 110
Period size: 44 Copynumber: 3.3 Consensus size: 43
99112036 TCTCATCTCC
* * *
99112046 CTAAGAAGTAGTGGAGCAGATCGAAGACGATGAGCCTTAACCCC
1 CTAAGCAGTAGTGGAGCAGATCGAAGATG-TGAGCCTTAACCCT
* * * * * * * * **
99112090 CTAAGTAGTAGAGAAACAGATTGGAA-AT-TACAGATCTTATCTTT
1 CTAAGCAGTAGTGGAGCAGA-TCGAAGATGT-GAG-CCTTAACCCT
99112134 CTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAGCCTTAACCCT
1 CTAAGCAGTAGTGGAGCAGATCGAAGAT-GTGAGCCTTAACCCT
99112178 CTAAGCAGTAG
1 CTAAGCAGTAG
99112189 GGAAACAGGC
Statistics
Matches: 71, Mismatches: 22, Indels: 12
0.68 0.21 0.11
Matches are distributed among these distances:
42 1 0.01
43 6 0.08
44 57 0.80
45 6 0.08
46 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (43 bp):
CTAAGCAGTAGTGGAGCAGATCGAAGATGTGAGCCTTAACCCT
Found at i:99112539 original size:44 final size:44
Alignment explanation
Indices: 99112310--99112539 Score: 120
Period size: 44 Copynumber: 5.2 Consensus size: 44
99112300 TCTCATCTCC
* * * * *
99112310 CTAAGCAGTAGTGGAGCAGATCAAAGACGGTGAGCCTTAACCCC
1 CTAAGCAGTAGTGGAGCGGATCGAAGACAGTGAGCCTTATCCCT
* * * * * *
99112354 CTAAGCAGTAG-GGAAACAGGCTAGAAATTACA--GA-TCTTATCTCT
1 CTAAGCAGTAGTGG-AGC-GGATCG-AA-GACAGTGAGCCTTATCCCT
* * *
99112398 CTAA-CGGTAGTGGAGTGGATCGAAGACAGTGAGCCTTATCCCC
1 CTAAGCAGTAGTGGAGCGGATCGAAGACAGTGAGCCTTATCCCT
* * * * *
99112441 CTAAGCAGTAG-GGAAACAGGCT-GAAGATTA-T-AGATCTCATCTCCT
1 CTAAGCAGTAGTGG-AGC-GGATCGAAGA-CAGTGAG-CCTTATC-CCT
*
99112486 -TAAGCAGTAGTGGAGCGGATCGAAGACGGTGAGCCTTATCCCT
1 CTAAGCAGTAGTGGAGCGGATCGAAGACAGTGAGCCTTATCCCT
*
99112529 CTAAGTAGTAG
1 CTAAGCAGTAG
99112540 GGAAACAGGC
Statistics
Matches: 132, Mismatches: 35, Indels: 38
0.64 0.17 0.19
Matches are distributed among these distances:
40 3 0.02
41 2 0.02
42 6 0.05
43 29 0.22
44 74 0.56
45 14 0.11
46 2 0.02
47 2 0.02
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (44 bp):
CTAAGCAGTAGTGGAGCGGATCGAAGACAGTGAGCCTTATCCCT
Found at i:99112555 original size:44 final size:44
Alignment explanation
Indices: 99112419--99112555 Score: 122
Period size: 44 Copynumber: 3.1 Consensus size: 44
99112409 GGAGTGGATC
*
99112419 GAAGACAGTGAGCCTTATCCCCCTAAGCAGTAGGGAAACAGGCT
1 GAAGACAGTGAGCCTTATCCCTCTAAGCAGTAGGGAAACAGGCT
* * * * *
99112463 GAAGATTA-T-AGATCTCATCTCCT-TAAGCAGTAGTGG-AGC-GGAT
1 GAAGA-CAGTGAG-CCTTATC-CCTCTAAGCAGTAG-GGAAACAGGCT
* *
99112506 CGAAGACGGTGAGCCTTATCCCTCTAAGTAGTAGGGAAACAGGCT
1 -GAAGACAGTGAGCCTTATCCCTCTAAGCAGTAGGGAAACAGGCT
99112551 GAAGA
1 GAAGA
99112556 TTACAAGTCT
Statistics
Matches: 70, Mismatches: 13, Indels: 20
0.68 0.13 0.19
Matches are distributed among these distances:
43 10 0.14
44 50 0.71
45 10 0.14
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.20
Consensus pattern (44 bp):
GAAGACAGTGAGCCTTATCCCTCTAAGCAGTAGGGAAACAGGCT
Found at i:99113751 original size:28 final size:29
Alignment explanation
Indices: 99113704--99113761 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
99113694 TTTTTAGGGT
*
99113704 TTTTTTTTTAAAAAACAAAA-GGTTAAAA
1 TTTTTCTTTAAAAAACAAAATGGTTAAAA
*
99113732 TTTTTCTTTAAACAAA-AAAATGGTTTAAA
1 TTTTTCTTTAAA-AAACAAAATGGTTAAAA
99113761 T
1 T
99113762 GATAAAAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 15 0.58
29 11 0.42
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.41
Consensus pattern (29 bp):
TTTTTCTTTAAAAAACAAAATGGTTAAAA
Found at i:99114782 original size:23 final size:23
Alignment explanation
Indices: 99114756--99114803 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
99114746 GTTTTGCATG
* *
99114756 TATTGTTTGTTG-GTTTTTTTATT
1 TATTGTTT-TTGTGTGTTTTAATT
99114779 TATTGTTTTTGTGTGTTTTAATT
1 TATTGTTTTTGTGTGTTTTAATT
99114802 TA
1 TA
99114804 CATATTTTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 3 0.14
23 19 0.86
ACGTcount: A:0.12, C:0.00, G:0.17, T:0.71
Consensus pattern (23 bp):
TATTGTTTTTGTGTGTTTTAATT
Found at i:99116346 original size:18 final size:18
Alignment explanation
Indices: 99116323--99116358 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
99116313 AGTTGTCAAT
99116323 TTAGTTTTCATATGTTAA
1 TTAGTTTTCATATGTTAA
* *
99116341 TTAGTTTTTATATTTTAA
1 TTAGTTTTCATATGTTAA
99116359 CGCGTAATGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.03, G:0.08, T:0.61
Consensus pattern (18 bp):
TTAGTTTTCATATGTTAA
Found at i:99126188 original size:22 final size:23
Alignment explanation
Indices: 99126144--99126188 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
99126134 ATTGAAATAG
99126144 AGTTAATATTTATTGTTTAATGA
1 AGTTAATATTTATTGTTTAATGA
* *
99126167 AGTTAATTTTTA-TGTTTTATGA
1 AGTTAATATTTATTGTTTAATGA
99126189 TTTTGTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56
Consensus pattern (23 bp):
AGTTAATATTTATTGTTTAATGA
Found at i:99131311 original size:13 final size:14
Alignment explanation
Indices: 99131284--99131325 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
99131274 TATATATATC
99131284 AAAACATAAAAAAAT
1 AAAA-ATAAAAAAAT
99131299 ATAAAATAAAAATAA-
1 A-AAAATAAAAA-AAT
99131314 AAAAATAAAAAA
1 AAAAATAAAAAA
99131326 TTTTACCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 1 0.04
14 10 0.40
15 9 0.36
16 5 0.20
ACGTcount: A:0.83, C:0.02, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAAATAAAAAAAT
Found at i:99131315 original size:21 final size:22
Alignment explanation
Indices: 99131284--99131326 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
99131274 TATATATATC
*
99131284 AAAACATAAAAAAATATAAAAT
1 AAAACATAAAAAAATAAAAAAT
99131306 AAAA-ATAAAAAAATAAAAAAT
1 AAAACATAAAAAAATAAAAAAT
99131327 TTTACCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.16
Consensus pattern (22 bp):
AAAACATAAAAAAATAAAAAAT
Found at i:99131922 original size:18 final size:20
Alignment explanation
Indices: 99131889--99132006 Score: 72
Period size: 18 Copynumber: 6.1 Consensus size: 20
99131879 AGATTAAGTT
*
99131889 TTTTTTATTATATATTGCTA
1 TTTTTTATTATATATTACTA
99131909 TTTTTTA-TAT-TATTACTA
1 TTTTTTATTATATATTACTA
*
99131927 TTATTATTATTTTATATTA-T-
1 TT-TT-TTATTATATATTACTA
* * * *
99131947 TATTATGTTATAT-TTAGTA
1 TTTTTTATTATATATTACTA
*
99131966 TTATTT-TTA-ATATTA-TA
1 TTTTTTATTATATATTACTA
*
99131983 TTTTTTTACTATTATATTACTA
1 -TTTTTTATTA-TATATTACTA
99132005 TT
1 TT
99132007 ATCTTTGTTA
Statistics
Matches: 75, Mismatches: 11, Indels: 23
0.69 0.10 0.21
Matches are distributed among these distances:
17 7 0.09
18 27 0.36
19 12 0.16
20 11 0.15
21 11 0.15
22 7 0.09
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (20 bp):
TTTTTTATTATATATTACTA
Found at i:99131928 original size:9 final size:8
Alignment explanation
Indices: 99131913--99132001 Score: 51
Period size: 8 Copynumber: 11.0 Consensus size: 8
99131903 TTGCTATTTT
99131913 TTATATTA
1 TTATATTA
99131921 TTACTATTA
1 TTA-TATTA
99131930 TTATTATT-
1 TTA-TATTA
99131938 TTATATTA
1 TTATATTA
*
99131946 TTAT-TATG
1 TTATAT-TA
99131954 TTATA-T-
1 TTATATTA
99131960 TTAGTATTA
1 TTA-TATTA
* *
99131969 TTTTTAATA
1 -TTATATTA
*
99131978 TTATATTT
1 TTATATTA
* *
99131986 TTTTACTA
1 TTATATTA
99131994 TTATATTA
1 TTATATTA
99132002 CTATTATCTT
Statistics
Matches: 61, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
6 3 0.05
7 8 0.13
8 32 0.52
9 16 0.26
10 2 0.03
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (8 bp):
TTATATTA
Found at i:99131931 original size:3 final size:3
Alignment explanation
Indices: 99131916--99132116 Score: 66
Period size: 3 Copynumber: 68.0 Consensus size: 3
99131906 CTATTTTTTA
* *
99131916 TAT TAT TAC TAT TAT TAT TAT T-T TA- TAT TAT TAT TA- TGT TA- TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * * * * *
99131961 TAG TAT TAT TTT TAA TAT TA- TAT T-T TTT TAC TAT TA- TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
99132006 TAT CT-T TGT TAT T-T TCT CTAT TAC TATT TAT TACT CTAT T-T TAAA
1 TAT -TAT TAT TAT TAT TAT -TAT TAT TA-T TAT TA-T -TAT TAT T-AT
* * * * * *
99132051 CAT TTT TAT TA- TAT TA- TATT TGT TTT TTT TAT ATCT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT -TAT TAT TAT TAT
*
99132096 TAT TAT TAG TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT
99132117 ATACAATATT
Statistics
Matches: 145, Mismatches: 32, Indels: 42
0.66 0.15 0.19
Matches are distributed among these distances:
2 22 0.15
3 109 0.75
4 12 0.08
5 2 0.01
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:99131946 original size:16 final size:15
Alignment explanation
Indices: 99131913--99132001 Score: 74
Period size: 16 Copynumber: 5.5 Consensus size: 15
99131903 TTGCTATTTT
99131913 TTATATTA--TTACTA
1 TTATATTATTTTA-TA
99131927 TTATTATTATTTTATA
1 TTA-TATTATTTTATA
*
99131943 TTATTATTATGTTATA
1 TTA-TATTATTTTATA
99131959 TTTAGTATTATTTTTAATA
1 -TTA-TATTA-TTTT-ATA
*
99131978 TTATATTTTTTTACTA
1 TTATATTATTTTA-TA
99131994 TTATATTA
1 TTATATTA
99132002 CTATTATCTT
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
14 3 0.05
15 6 0.10
16 30 0.48
17 15 0.24
18 6 0.10
19 3 0.05
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (15 bp):
TTATATTATTTTATA
Found at i:99132354 original size:25 final size:27
Alignment explanation
Indices: 99132321--99132379 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
99132311 TTTTAATACC
*
99132321 CTATGTATTG-TGTATATTCTTAAT-A
1 CTATATATTGATGTATATTCTTAATAA
*
99132346 CTATATATTGTATGTATTTTCTTAATAA
1 CTATATATTG-ATGTATATTCTTAATAA
99132374 CTATAT
1 CTATAT
99132380 TATATGTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 9 0.31
27 13 0.45
28 7 0.24
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.53
Consensus pattern (27 bp):
CTATATATTGATGTATATTCTTAATAA
Found at i:99132385 original size:26 final size:26
Alignment explanation
Indices: 99132331--99132390 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
99132321 CTATGTATTG
*
99132331 TGTATATTCTTAATACTATATATTGTA
1 TGTATATTCTTAATAC-ATATATTATA
*
99132358 TGTATTTTCTTAATA-ACTATATTATA
1 TGTATATTCTTAATACA-TATATTATA
99132384 TGTATAT
1 TGTATAT
99132391 ATATACTATG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 1 0.03
26 14 0.48
27 14 0.48
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (26 bp):
TGTATATTCTTAATACATATATTATA
Found at i:99140508 original size:56 final size:56
Alignment explanation
Indices: 99140422--99140532 Score: 213
Period size: 56 Copynumber: 2.0 Consensus size: 56
99140412 TGTCATGGTC
*
99140422 TTTTCATTCTCATTAAAATTTTTTCCCTCTCCTCACAGCCTGTTATTGCATATATA
1 TTTTCATTCTCATTAAAATTTTTTCCCTCTCCTCACAGCCTGTCATTGCATATATA
99140478 TTTTCATTCTCATTAAAATTTTTTCCCTCTCCTCACAGCCTGTCATTGCATATAT
1 TTTTCATTCTCATTAAAATTTTTTCCCTCTCCTCACAGCCTGTCATTGCATATAT
99140533 CTCACATCAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.23, C:0.26, G:0.05, T:0.46
Consensus pattern (56 bp):
TTTTCATTCTCATTAAAATTTTTTCCCTCTCCTCACAGCCTGTCATTGCATATATA
Found at i:99143226 original size:29 final size:29
Alignment explanation
Indices: 99143192--99143249 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
99143182 TGTGATATAA
99143192 AAGATTATTGACCACATATGTGGCGTATG
1 AAGATTATTGACCACATATGTGGCGTATG
*
99143221 AAGATTATTGGCCACATATGTGGCGTATG
1 AAGATTATTGACCACATATGTGGCGTATG
99143250 CCCAGATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (29 bp):
AAGATTATTGACCACATATGTGGCGTATG
Found at i:99145942 original size:27 final size:27
Alignment explanation
Indices: 99145904--99145957 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
99145894 TTGGAGATTC
99145904 AGTATGACATGATTTGTGATTACTATT
1 AGTATGACATGATTTGTGATTACTATT
99145931 AGTATGACATGATTTGTGATTACTATT
1 AGTATGACATGATTTGTGATTACTATT
99145958 TTGATTTGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (27 bp):
AGTATGACATGATTTGTGATTACTATT
Found at i:99152636 original size:24 final size:24
Alignment explanation
Indices: 99152609--99152660 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
99152599 TTAGTAAGTC
*
99152609 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
99152633 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
99152657 AAAT
1 AAAT
99152661 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:99154606 original size:24 final size:24
Alignment explanation
Indices: 99154579--99154630 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
99154569 TTAGTAAGTC
*
99154579 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
99154603 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
99154627 AAAT
1 AAAT
99154631 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:99160301 original size:28 final size:27
Alignment explanation
Indices: 99160270--99160326 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
99160260 CTTTGTAGTG
99160270 AACTCTGAAAAGAATAGCCTTTATGGAA
1 AACTCTGAAAAGAAT-GCCTTTATGGAA
* * * *
99160298 AACTTTGAAAGGGATGCCTTTGTGGAA
1 AACTCTGAAAAGAATGCCTTTATGGAA
99160325 AA
1 AA
99160327 TTCCAAATGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 13 0.52
28 12 0.48
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.26
Consensus pattern (27 bp):
AACTCTGAAAAGAATGCCTTTATGGAA
Found at i:99163148 original size:60 final size:60
Alignment explanation
Indices: 99163055--99163236 Score: 204
Period size: 60 Copynumber: 3.0 Consensus size: 60
99163045 GTGCAAAAAA
* * *
99163055 GGACACCAAAGTGTATACAGGAGCACCAAAGTGCGAACAAGGGCATAGTCGTGAAAACAG
1 GGACACCGAAGTGTATACAGGAGCACCAAAGTGCGAACAAGGGCACAATCGTGAAAACAG
* * * ** * * *
99163115 GGACATCGAAGTGTATACAGGGGCGCTGAAGTGCGAACCAGGGCACAATCGTGCAAATAG
1 GGACACCGAAGTGTATACAGGAGCACCAAAGTGCGAACAAGGGCACAATCGTGAAAACAG
** * * *
99163175 GGACACCGAAGTGTATACA-GAGGCAAAAAAGTGTGAACAGGGGCACAATCGTGCAAACAG
1 GGACACCGAAGTGTATACAGGA-GCACCAAAGTGCGAACAAGGGCACAATCGTGAAAACAG
99163235 GG
1 GG
99163237 GCACTTCTTC
Statistics
Matches: 100, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
59 1 0.01
60 99 0.99
ACGTcount: A:0.37, C:0.19, G:0.31, T:0.13
Consensus pattern (60 bp):
GGACACCGAAGTGTATACAGGAGCACCAAAGTGCGAACAAGGGCACAATCGTGAAAACAG
Found at i:99170214 original size:50 final size:50
Alignment explanation
Indices: 99170138--99170364 Score: 348
Period size: 50 Copynumber: 4.5 Consensus size: 50
99170128 CCATGGCAAC
99170138 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
99170188 GAGTGATAAGTGATAACTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
99170238 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TGA
* *
99170288 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAATGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
99170338 CAACTGAAAAGTGGTAGCTTCTGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
99170365 CTGATCAGTG
Statistics
Matches: 162, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
49 3 0.02
50 134 0.83
51 25 0.15
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:99170380 original size:31 final size:31
Alignment explanation
Indices: 99170342--99170488 Score: 222
Period size: 31 Copynumber: 4.7 Consensus size: 31
99170332 AAATGACAAC
*
99170342 TGAAAAGTGGTAGCTTCTGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* *
99170373 TGAAAAGTGGTAGCTCCGGCTACTTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
*
99170404 TGAAAAGTGGTTGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* * *
99170435 TGAAAAATGGTAGCTCCGGTTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
*
99170466 TGAATAGTGGTAGCTTCGGCTAC
1 TGAAAAGTGGTAGCTTCGGCTAC
99170489 AAGTGACAAG
Statistics
Matches: 102, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 102 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
Found at i:99170568 original size:47 final size:47
Alignment explanation
Indices: 99170514--99170646 Score: 230
Period size: 47 Copynumber: 2.8 Consensus size: 47
99170504 AGTAATTTCC
99170514 GTATAAGACCATATCTGGGATATGACATCGGTGTGATATATGCTACT
1 GTATAAGACCATATCTGGGATATGACATCGGTGTGATATATGCTACT
*
99170561 GTATAAGACTATATCTGGGATATGACATCGGTGTGATATATGCTACT
1 GTATAAGACCATATCTGGGATATGACATCGGTGTGATATATGCTACT
* * *
99170608 GTATAAGACCATATCTGGGATATGGCATCAGTGAGATAT
1 GTATAAGACCATATCTGGGATATGACATCGGTGTGATAT
99170647 GTGATTCGTG
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 81 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.32
Consensus pattern (47 bp):
GTATAAGACCATATCTGGGATATGACATCGGTGTGATATATGCTACT
Found at i:99170717 original size:42 final size:42
Alignment explanation
Indices: 99170654--99170807 Score: 220
Period size: 42 Copynumber: 3.7 Consensus size: 42
99170644 TATGTGATTC
* *
99170654 GTGTAAGACCATAGCTAGGCTATGGCATTGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATT-ATTATGTGAATAT
* *
99170696 TTGTAAGACCATAGCTGGGCTATGGCATCATTATGTGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATTATTATGTGAATAT
*
99170738 GTGTAAGACCATAGCTGGGCTATGGCATTATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATTATTATGTGAATAT
* **
99170780 GTGTAAGACCATAGTTGAACTATGGCAT
1 GTGTAAGACCATAGCTGGGCTATGGCAT
99170808 CGAGAAAATG
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
41 1 0.01
42 100 0.99
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATTATTATGTGAATAT
Found at i:99170785 original size:84 final size:85
Alignment explanation
Indices: 99170611--99170808 Score: 233
Period size: 84 Copynumber: 2.3 Consensus size: 85
99170601 TGCTACTGTA
* *
99170611 TAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTCGTGTAAGACCATAGCTAGGCTA
1 TAAGACCATAGCTGGGCTATGGCATCAGT---ATATGTGATTCGTGTAAGACCATAGCTAGGCTA
* *
99170676 TGGCATTGATATATGAATATTTG
63 TGGCATTGATATATGAAGATGTG
*
99170699 TAAGACCATAGCTGGGCTATGGCATCA-T-TATGTGAATAT-GTGTAAGACCATAGCTGGGCTAT
1 TAAGACCATAGCTGGGCTATGGCATCAGTATATGTG-AT-TCGTGTAAGACCATAGCTAGGCTAT
*
99170761 GGCATT-ATTATGTGAAGATGTG
64 GGCATTGA-TATATGAAGATGTG
* **
99170783 TAAGACCATAGTTGAACTATGGCATC
1 TAAGACCATAGCTGGGCTATGGCATC
99170809 GAGAAAATGA
Statistics
Matches: 98, Mismatches: 9, Indels: 10
0.84 0.08 0.09
Matches are distributed among these distances:
83 7 0.07
84 64 0.65
85 1 0.01
87 1 0.01
88 25 0.26
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (85 bp):
TAAGACCATAGCTGGGCTATGGCATCAGTATATGTGATTCGTGTAAGACCATAGCTAGGCTATGG
CATTGATATATGAAGATGTG
Found at i:99172559 original size:22 final size:23
Alignment explanation
Indices: 99172531--99172574 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
99172521 TGCAATCTTG
99172531 GATATGACT-TGTAATATTAGAA
1 GATATGACTATGTAATATTAGAA
* *
99172553 GATATGATTATGTAATCTTAGA
1 GATATGACTATGTAATATTAGA
99172575 GATTTGATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.39, C:0.05, G:0.18, T:0.39
Consensus pattern (23 bp):
GATATGACTATGTAATATTAGAA
Found at i:99172577 original size:22 final size:22
Alignment explanation
Indices: 99172519--99172583 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
99172509 TCTTCAAAGA
* *
99172519 TATGCAATCTT-G-GATATGAC
1 TATGTAATCTTAGAGATATGAT
*
99172539 T-TGTAATATTAGAAGATATGAT
1 TATGTAATCTTAG-AGATATGAT
*
99172561 TATGTAATCTTAGAGATTTGAT
1 TATGTAATCTTAGAGATATGAT
99172583 T
1 T
99172584 TTTTAGATAG
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
19 7 0.19
20 2 0.06
22 17 0.47
23 10 0.28
ACGTcount: A:0.34, C:0.06, G:0.18, T:0.42
Consensus pattern (22 bp):
TATGTAATCTTAGAGATATGAT
Found at i:99172983 original size:19 final size:21
Alignment explanation
Indices: 99172948--99172988 Score: 68
Period size: 19 Copynumber: 2.0 Consensus size: 21
99172938 GACACTTAAC
99172948 ACAAAGTAAAAATGAAGATAG
1 ACAAAGTAAAAATGAAGATAG
99172969 ACAAAG-AAAAA-GAAGATAG
1 ACAAAGTAAAAATGAAGATAG
99172988 A
1 A
99172989 AATGCGAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 9 0.45
20 5 0.25
21 6 0.30
ACGTcount: A:0.66, C:0.05, G:0.20, T:0.10
Consensus pattern (21 bp):
ACAAAGTAAAAATGAAGATAG
Found at i:99178171 original size:20 final size:20
Alignment explanation
Indices: 99178146--99178197 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
99178136 GAGGCAATGC
*
99178146 ACACGCCTGTGTGCTTTGGG
1 ACACGCCCGTGTGCTTTGGG
99178166 ACACGCCCGTGTGCTTTGGG
1 ACACGCCCGTGTGCTTTGGG
99178186 ACACGCCCGTGT
1 ACACGCCCGTGT
99178198 CCCCTACCCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.12, C:0.31, G:0.33, T:0.25
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTTGGG
Found at i:99191721 original size:48 final size:47
Alignment explanation
Indices: 99191569--99191768 Score: 175
Period size: 46 Copynumber: 4.3 Consensus size: 47
99191559 CCATGTCAAG
*
99191569 GACATAGTCTTACACT-G-AC-ACATTTCATA-GCCGATGCATGTCCCA
1 GACAT-GTCTTACACTGGAACTACATCTCA-AGGCCGATGCATGTCCCA
* * *
99191614 GACATGTCTTACACT-GAATTACATCTCGAGGCCGATACATGTCCCA
1 GACATGTCTTACACTGGAACTACATCTCAAGGCCGATGCATGTCCCA
* * * *
99191660 GACACGTCTTACACTGGAACT-CATCTCAATGTCGATGCCATATCCCA
1 GACATGTCTTACACTGGAACTACATCTCAAGGCCGATG-CATGTCCCA
** * *
99191707 GACATGGTCTTACACTGGTTCTTATAATGT---GGCCGATGCATGTCCCA
1 GACAT-GTCTTACACTGGAAC-TA-CATCTCAAGGCCGATGCATGTCCCA
99191754 GACATGTCTTACACT
1 GACATGTCTTACACT
99191769 AGCTCACAAA
Statistics
Matches: 127, Mismatches: 19, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
44 11 0.09
45 7 0.06
46 57 0.45
47 29 0.23
48 19 0.15
49 1 0.01
51 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (47 bp):
GACATGTCTTACACTGGAACTACATCTCAAGGCCGATGCATGTCCCA
Found at i:99193149 original size:43 final size:43
Alignment explanation
Indices: 99193085--99193189 Score: 174
Period size: 43 Copynumber: 2.4 Consensus size: 43
99193075 TGAAATGGGT
* *
99193085 CTACTCACACGAGTTGTGGGTAGGGATGTTATGCTACACAATG
1 CTACTCACACGAGCTGTGGGTAGGGATGTTAGGCTACACAATG
* *
99193128 CTGCTCACACGAGCTGTGGGTAGGGATGTTAGGCTACACGATG
1 CTACTCACACGAGCTGTGGGTAGGGATGTTAGGCTACACAATG
99193171 CTACTCACACGAGCTGTGG
1 CTACTCACACGAGCTGTGG
99193190 AGAATCTGCA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (43 bp):
CTACTCACACGAGCTGTGGGTAGGGATGTTAGGCTACACAATG
Found at i:99194208 original size:19 final size:19
Alignment explanation
Indices: 99194184--99194222 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
99194174 CAAAACAAAG
99194184 AAAGGAAGAAGATCATAGC
1 AAAGGAAGAAGATCATAGC
99194203 AAAGGAAGAAGATCATAGC
1 AAAGGAAGAAGATCATAGC
99194222 A
1 A
99194223 TTTTGCCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.10, G:0.26, T:0.10
Consensus pattern (19 bp):
AAAGGAAGAAGATCATAGC
Found at i:99195237 original size:19 final size:19
Alignment explanation
Indices: 99195210--99195246 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
99195200 ATTACAAAAA
99195210 AAAAATCAAAATAATTTTC
1 AAAAATCAAAATAATTTTC
*
99195229 AAAATTCAAAATAATTTT
1 AAAAATCAAAATAATTTT
99195247 TAAATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAAATCAAAATAATTTTC
Found at i:99205139 original size:42 final size:42
Alignment explanation
Indices: 99205067--99205183 Score: 114
Period size: 42 Copynumber: 2.8 Consensus size: 42
99205057 CATAAGCTCG
* * *
99205067 TACAATGCCAACT-TCCCAAAC-GTGGTCTTACATGTAATCAAA
1 TACAATGCCAA-TGTCCCAGACAG-GGTCTTACACGAAATCAAA
* *
99205109 TATCAATGCCACTGT-CCAGACAGGGTCTTACACGAAATCATA
1 TA-CAATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAA
* * *
99205151 TACGATGTCAATGTCCCAGACATGGTCTTACAC
1 TACAATGCCAATGTCCCAGACAGGGTCTTACAC
99205184 ATAAATCACA
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
41 9 0.15
42 43 0.69
43 10 0.16
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAA
Found at i:99205766 original size:23 final size:23
Alignment explanation
Indices: 99205736--99205781 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
99205726 AAATCTCATC
*
99205736 AAACCCATATTAGGCTGAATTTA
1 AAACCCATATTAGGCCGAATTTA
99205759 AAACCCATATTAGGCCGAATTTA
1 AAACCCATATTAGGCCGAATTTA
99205782 CCTTAGGTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (23 bp):
AAACCCATATTAGGCCGAATTTA
Found at i:99208795 original size:27 final size:27
Alignment explanation
Indices: 99208765--99208851 Score: 124
Period size: 27 Copynumber: 3.2 Consensus size: 27
99208755 ATGATGAAGT
*
99208765 CACCAGATACAGATATTGTGGTAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
99208792 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
99208819 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
99208846 CACCAG
1 CACCAG
99208852 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
26 8 0.15
27 45 0.82
28 2 0.04
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:99210477 original size:26 final size:26
Alignment explanation
Indices: 99210447--99210528 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
99210437 TGAAATGCCC
99210447 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
99210473 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
99210499 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
99210525 ATCA
1 ATCA
99210529 ATTTTTATAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:99216749 original size:27 final size:27
Alignment explanation
Indices: 99216719--99216803 Score: 102
Period size: 27 Copynumber: 3.1 Consensus size: 27
99216709 GACGAAGTCT
99216719 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGATACAGATATTGTGGCAGAGCCA
* *
99216746 CCAG-GACAGATATATGTGGCTGAGCCA
1 CCAGATACAGATAT-TGTGGCAGAGCCA
* *
99216773 CTAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGAT-ATTGTGGCAGAGCCA
99216800 CCAG
1 CCAG
99216804 GACGCTTCCT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
26 8 0.17
27 38 0.79
28 2 0.04
ACGTcount: A:0.32, C:0.22, G:0.26, T:0.20
Consensus pattern (27 bp):
CCAGATACAGATATTGTGGCAGAGCCA
Found at i:99218431 original size:26 final size:26
Alignment explanation
Indices: 99218401--99218482 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
99218391 TGAAATGCCC
99218401 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
99218427 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
99218453 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
99218479 ATCA
1 ATCA
99218483 ATTTTTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:99219540 original size:46 final size:48
Alignment explanation
Indices: 99219295--99219611 Score: 241
Period size: 46 Copynumber: 6.7 Consensus size: 48
99219285 GTATAATACG
*
99219295 GATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCTATC-AAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATC--TCGAGGTC
* * * **
99219342 GATGCCATGTCCTAAACATGGTCTTACACTGAC-TATCGAAATCGAGG-C
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-C-ATCTCGAGGTC
* ** * * * *
99219390 TGACGTTATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCATG-C
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCTCGAGGTC
* * *
99219440 AGATGCCATGTCCCAAACATGGT-TTACACTGAC--ACATCTCGTAGCT-
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCG-AGGTC
99219486 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGTC
* * * * *
99219532 GATG-CATGTCCCAGACAT-GTCTTACATTAGCTCT-CGTCTCAATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGAGGTC
*
99219578 GATGCCATGTCCTAGACATGGTCTTACACTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
99219612 CTCATAATGT
Statistics
Matches: 215, Mismatches: 38, Indels: 33
0.75 0.13 0.12
Matches are distributed among these distances:
43 2 0.01
44 22 0.10
45 13 0.06
46 52 0.24
47 45 0.21
48 15 0.07
49 37 0.17
50 26 0.12
51 2 0.01
52 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGTC
Found at i:99219630 original size:94 final size:92
Alignment explanation
Indices: 99219295--99219656 Score: 237
Period size: 94 Copynumber: 3.8 Consensus size: 92
99219285 GTATAATACG
* * *
99219295 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-TATC-AAGTCGATGCCATGTCCTAAA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CATATCGAGGTCGATG-CATGTCCCAAA
* ** * *
99219358 CATGGTCTTACACT-GACTATCGAAATCGA-GGC
62 CAT-GTCTTACACTAG-CTCTCG-TCTCAATGTC
* * * * *
99219390 TGACGTTATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCATG-CAGATGCCATGTCCC
1 -GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-ACATATCGAGGTC-GATG-CATGTCCC
* * * *
99219454 AAACATGGT-TTACACT-G-ACACATCTC-GTAG-C
59 AAACAT-GTCTTACACTAGCTCTCGTCTCAAT-GTC
* *
99219485 TGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGTCGATGCATGTCCCAGACAT
1 -GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGTCGATGCATGTCCCAAACAT
*
99219550 GTCTTACATTAGCTCTCGTCTCAATGTC
65 GTCTTACACTAGCTCTCGTCTCAATGTC
* *
99219578 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCT-CATAAT-GTGG-CTGATGCATGTCCCAA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGTC-GATGCATGTCCCAA
99219640 ACATGTCTTACACTAGC
61 ACATGTCTTACACTAGC
99219657 ACACAAATAA
Statistics
Matches: 217, Mismatches: 31, Indels: 38
0.76 0.11 0.13
Matches are distributed among these distances:
89 2 0.01
90 19 0.09
91 13 0.06
92 13 0.06
93 29 0.13
94 62 0.29
95 9 0.04
96 32 0.15
97 1 0.00
98 14 0.06
99 23 0.11
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGTCGATGCATGTCCCAAACATG
TCTTACACTAGCTCTCGTCTCAATGTC
Found at i:99225785 original size:27 final size:29
Alignment explanation
Indices: 99225732--99225785 Score: 67
Period size: 27 Copynumber: 1.9 Consensus size: 29
99225722 AACCATATCT
* * *
99225732 TATTCATTTATTCATGTTTCATTTACACG
1 TATTCATATATTCATGTTCCATATACACG
99225761 TATTCATAT-TTCAT-TTCCATATACA
1 TATTCATATATTCATGTTCCATATACA
99225786 TCACATAACA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 9 0.41
28 5 0.23
29 8 0.36
ACGTcount: A:0.28, C:0.19, G:0.04, T:0.50
Consensus pattern (29 bp):
TATTCATATATTCATGTTCCATATACACG
Found at i:99226031 original size:43 final size:43
Alignment explanation
Indices: 99225953--99226097 Score: 134
Period size: 43 Copynumber: 3.4 Consensus size: 43
99225943 AGCTCATACA
* ** *
99225953 ATGCCAATGTCCTAGAC-GTGGTCTTACTTGTAATCAAATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCAAATATCG
* *
99225996 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCATATA-CG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATATCG
* * * * *
99226038 ATGCCAATATCCCGGACATGATCTTACACGTAAAT-AACAAATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACACG-AAATCAA-ATATCG
*
99226082 ATGCCAACGTCCCAGA
1 ATGCCAATGTCCCAGA
99226098 TGTGGTCCTA
Statistics
Matches: 82, Mismatches: 16, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
42 28 0.34
43 38 0.46
44 16 0.20
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATATCG
Found at i:99226063 original size:42 final size:44
Alignment explanation
Indices: 99225984--99226097 Score: 117
Period size: 42 Copynumber: 2.6 Consensus size: 44
99225974 TCTTACTTGT
* * *
99225984 AATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACG-A
1 AATCAAATATCGATGCCAATATCCCAGACAGGATCTTACACGTA
* * *
99226027 AATCATATA-CGATGCCAATATCCCGGACATGATCTTACACGTA
1 AATCAAATATCGATGCCAATATCCCAGACAGGATCTTACACGTA
* **
99226070 AAT-AACAAATCGATGCCAACGTCCCAGA
1 AATCAA-ATATCGATGCCAATATCCCAGA
99226098 TGTGGTCCTA
Statistics
Matches: 57, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
42 28 0.49
43 14 0.25
44 15 0.26
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.21
Consensus pattern (44 bp):
AATCAAATATCGATGCCAATATCCCAGACAGGATCTTACACGTA
Found at i:99226713 original size:16 final size:16
Alignment explanation
Indices: 99226692--99226732 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
99226682 ATTTTGACCC
*
99226692 CTCAATTTTCAAATTT
1 CTCAATTTACAAATTT
99226708 CTCAATTTACAAATTT
1 CTCAATTTACAAATTT
99226724 CTCAATTTA
1 CTCAATTTA
99226733 GTCCTTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.34, C:0.20, G:0.00, T:0.46
Consensus pattern (16 bp):
CTCAATTTACAAATTT
Found at i:99227633 original size:15 final size:15
Alignment explanation
Indices: 99227613--99227642 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
99227603 TTCACTGTTA
99227613 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
99227628 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
99227643 GCACGCATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.07, G:0.07, T:0.73
Consensus pattern (15 bp):
TGTCTTTTATATTTT
Found at i:99235425 original size:13 final size:13
Alignment explanation
Indices: 99235407--99235435 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
99235397 GGTTGTTTAT
99235407 TAAACTAATTAAC
1 TAAACTAATTAAC
99235420 TAAACTAATTAAC
1 TAAACTAATTAAC
99235433 TAA
1 TAA
99235436 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:99252903 original size:22 final size:22
Alignment explanation
Indices: 99252874--99252936 Score: 99
Period size: 22 Copynumber: 2.9 Consensus size: 22
99252864 GCAACCATGA
99252874 AGCAGCCCCATACCTCCACTAC
1 AGCAGCCCCATACCTCCACTAC
* *
99252896 AGCGGCCCCATACCCCCACTAC
1 AGCAGCCCCATACCTCCACTAC
*
99252918 AGCAGTCCCATACCTCCAC
1 AGCAGCCCCATACCTCCAC
99252937 AGCCCTCGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.25, C:0.51, G:0.11, T:0.13
Consensus pattern (22 bp):
AGCAGCCCCATACCTCCACTAC
Found at i:99265962 original size:29 final size:29
Alignment explanation
Indices: 99265920--99265978 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
99265910 AGACAGGTAT
99265920 GAGGCCTGAAGAGAAGGTCGAGAATCAAA
1 GAGGCCTGAAGAGAAGGTCGAGAATCAAA
99265949 GAGGCCTGAAGAGAAGGTCGAGAATCAAA
1 GAGGCCTGAAGAGAAGGTCGAGAATCAAA
99265978 G
1 G
99265979 CAATGAACGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.14, G:0.36, T:0.10
Consensus pattern (29 bp):
GAGGCCTGAAGAGAAGGTCGAGAATCAAA
Found at i:99266364 original size:71 final size:69
Alignment explanation
Indices: 99266242--99266417 Score: 217
Period size: 71 Copynumber: 2.5 Consensus size: 69
99266232 CTTTCCAAGG
* ** * *
99266242 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTT-AGTTTA
99266307 TGTTT
65 TGTTT
** *
99266312 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAGTTTA
99266377 TGTTT
65 TGTTT
* ** * *
99266382 TAAATTGACTCATATTGCGAAAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
99266418 TTTAATTTTT
Statistics
Matches: 92, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
69 31 0.34
70 9 0.10
71 52 0.57
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAGTTTAT
GTTT
Found at i:99266562 original size:77 final size:75
Alignment explanation
Indices: 99266435--99266776 Score: 449
Period size: 72 Copynumber: 4.5 Consensus size: 75
99266425 TTTGTTTTTC
*
99266435 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
99266500 GTTGTTAAAAGA
66 GTT-TTAAAA-A
* **
99266512 AAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
99266577 GTTTT---CA
66 GTTTTAAAAA
* * ** * * *
99266584 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
99266649 GTTTTCAAAAA
66 GTTTT-AAAAA
* * *
99266660 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
99266724 TCTGTTTTTAAAAA
63 TCTG-TTTTAAAAA
*
99266738 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
99266777 ATTACACACT
Statistics
Matches: 236, Mismatches: 20, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
72 65 0.28
75 1 0.00
76 37 0.16
77 64 0.27
78 64 0.27
79 5 0.02
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAAAA
Found at i:99266627 original size:149 final size:147
Alignment explanation
Indices: 99266421--99266771 Score: 427
Period size: 149 Copynumber: 2.3 Consensus size: 147
99266411 TAAGCCTTTT
* * ** *
99266421 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTG-TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
*
99266486 TAATTTCAATTTCTGTTGTT-AAAAGAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCA
65 TAATTTCAATTTCTGTT-TTCAAAA-AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-
99266550 GG-ACACGCTGAGGTAATTTC
127 GGTACACGCTGAGGTAATTTC
* *
99266570 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
* * **
99266635 TATTTTCAATTTCTGTTTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGT
65 TAATTTCAATTTCTGTTTTCAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGG-
* *
99266700 TCACATGCTGAGGTATTTTC
129 T-ACACGCTGAGGTAATTTC
* **
99266720 AATTTCTGTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AATTTCTG-TTTT----CAAAATCAACTCATATTGCGAGAAATGAGTTGAGC
99266772 TTCAGATTAC
Statistics
Matches: 174, Mismatches: 18, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
147 2 0.01
148 45 0.26
149 68 0.39
150 24 0.14
151 4 0.02
154 27 0.16
155 4 0.02
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.34
Consensus pattern (147 bp):
AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
AATTTCAATTTCTGTTTTCAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGTA
CACGCTGAGGTAATTTC
Found at i:99266796 original size:78 final size:76
Alignment explanation
Indices: 99266435--99266776 Score: 451
Period size: 78 Copynumber: 4.5 Consensus size: 76
99266425 TTTGTTTTTC
* *
99266435 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
99266500 GTTGTTAAAAGA
66 GTTTTTAAAA-A
* ** *
99266512 AAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
99266577 G-TTTT---CA
66 GTTTTTAAAAA
* * ** * *
99266584 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
99266649 GTTTTCAAAAA
66 GTTTTTAAAAA
* *
99266660 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATT
99266724 TCTGTTTTTAAAAA
63 TCTGTTTTTAAAAA
*
99266738 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
99266777 ATTACACACT
Statistics
Matches: 234, Mismatches: 23, Indels: 14
0.86 0.08 0.05
Matches are distributed among these distances:
72 61 0.26
73 3 0.01
75 1 0.00
76 38 0.16
77 62 0.26
78 68 0.29
79 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32
Consensus pattern (76 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTTAAAAA
Found at i:99267201 original size:88 final size:87
Alignment explanation
Indices: 99266999--99267244 Score: 298
Period size: 88 Copynumber: 2.8 Consensus size: 87
99266989 TGTTTTAATT
*
99266999 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACGCTGAGGTATTTTCAATTAAGC-
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACAC-C-GAGGTATTTTCAATT--TCT
* *
99267063 CTTTTGATTTCTATTTTTCAAAAAAA
62 GTTTTCATTTCTATTTTTCAAAAAAA
* *
99267089 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCGAGGTATTTTCCATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTGTTT
** *
99267154 TCATTAT-TATGTTTTTGAAAGAA
66 TCATT-TCTAT-TTTTCAAAAAAA
** * ** *
99267177 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTGTTT
99267242 TCA
66 TCA
99267245 AAATTCAACT
Statistics
Matches: 137, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
86 1 0.01
87 10 0.07
88 84 0.61
89 1 0.01
90 41 0.30
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (87 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACCGAGGTATTTTCAATTTCTGTTT
TCATTTCTATTTTTCAAAAAAA
Found at i:99267368 original size:73 final size:73
Alignment explanation
Indices: 99267166--99267733 Score: 649
Period size: 73 Copynumber: 7.6 Consensus size: 73
99267156 ATTATTATGT
* * *
99267166 TTTTGAAAGAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTC
1 TTTTCAAA-AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
99267231 AATTTCTG-
65 AATTTCTGC
*
99267239 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
99267304 ATTTCTGC
66 ATTTCTGC
* * * * *
99267312 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAAGCTGAGGTAATTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
99267377 ATTTCTG-
66 ATTTCTGC
* ** *
99267384 TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTT
1 TTTTC--AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
*
99267449 CAATTTCTAC
64 CAATTTCTGC
**
99267459 TTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
1 TTTTC-A-AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
*
99267524 CAATTCCTGTTCAATTTATGT
64 CAA----T-TTC------TGC
** * * *
99267545 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
*
99267610 ATTTCTGT
66 ATTTCTGC
** ** * **
99267618 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
* *
99267683 AATTCTAC
66 ATTTCTGC
99267691 -TTTCAAAAAAATCAACTCATATTGCGA-AAGATGAGTTGAGCCT
1 TTTTC--AAAAATCAACTCATATTGCGAGAA-ATGAGTTGAGCCT
99267734 TGGCTCACGT
Statistics
Matches: 442, Mismatches: 34, Indels: 37
0.86 0.07 0.07
Matches are distributed among these distances:
72 69 0.16
73 145 0.33
74 93 0.21
75 63 0.14
79 4 0.01
80 4 0.01
84 57 0.13
85 1 0.00
86 6 0.01
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (73 bp):
TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
ATTTCTGC
Found at i:99267462 original size:147 final size:147
Alignment explanation
Indices: 99267166--99267733 Score: 658
Period size: 147 Copynumber: 3.8 Consensus size: 147
99267156 ATTATTATGT
* *
99267166 TTTTGAAAGAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACA-TTGAGGTAATTT
1 TTTTCAAA-AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA-AGCTGAGGTAATTT
* * *
99267230 CAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTG
64 CAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTG
99267293 AGGTATTTTCAATTTCTGC
129 AGGTATTTTCAATTTCTGC
* *
99267312 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAAGCTGAGGTAATTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAAGCTGAGGTAATTTCA
* *
99267377 ATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAG
66 ATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAG
*
99267442 GTATTTTCAATTTCTAC
131 GTATTTTCAATTTCTGC
** * * *
99267459 TTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
1 TTTTC-A-AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAAGCTGAGGTAATTT
* *** *
99267524 CAATTCCTGTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
64 CAA----T-TTC--TGT-TG--TCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCA
* * * *
99267589 GGACACGCTGAGGTAATTTCAATTTCTGT
119 AGACACGTTGAGGTATTTTCAATTTCTGC
** ** * * * *
99267618 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAAGCTGAGGTAATTTCA
* * *
99267683 AATTCTACTT-TCAAAAAAATCAACTCATATTGCGAAAGATGAGTTGAGCCT
66 ATTTCT-GTTGTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCT
99267734 TGGCTCACGT
Statistics
Matches: 367, Mismatches: 39, Indels: 31
0.84 0.09 0.07
Matches are distributed among these distances:
144 1 0.00
145 63 0.17
146 7 0.02
147 104 0.28
148 1 0.00
149 53 0.14
150 2 0.01
151 1 0.00
152 3 0.01
153 1 0.00
154 3 0.01
156 2 0.01
157 57 0.16
158 1 0.00
159 68 0.19
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (147 bp):
TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAAGCTGAGGTAATTTCA
ATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAG
GTATTTTCAATTTCTGC
Found at i:99267634 original size:306 final size:294
Alignment explanation
Indices: 99267175--99267733 Score: 787
Period size: 306 Copynumber: 1.9 Consensus size: 294
99267165 TTTTTGAAAG
*
99267175 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTATGT
* * *
99267240 TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAA
66 TTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
* *
99267305 TTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAAGCTGAGGT
131 TTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAAGCCGAGGT
* * * *
99267370 AATTTCAATTTCT-GTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
196 AATTTCAAATTCTACTT-TCAAAAAAATCAACTCATATTGCGAAAGATGAGTTGAGCCTCAAGAC
99267434 ACATTGAGGTATTTTCAATTTCTACTTTTCAAGAA
260 ACATTGAGGTATTTTCAATTTCTACTTTTCAAGAA
** *
99267469 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTCCTGT
1 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGG-----T-AA----T-T
** *
99267534 TCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
55 TCAATTTATG-TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTG
* ** *
99267599 AGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
119 AGGTAATTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
* * *
99267664 GCACGCCGAGGTATTTTCAAATTCTACTTTCAAAAAAATCAACTCATATTGCGAAAGATGAGTTG
184 ACAAGCCGAGGTAATTTCAAATTCTACTTTCAAAAAAATCAACTCATATTGCGAAAGATGAGTTG
99267729 AGCCT
249 AGCCT
99267734 TGGCTCACGT
Statistics
Matches: 229, Mismatches: 23, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
294 46 0.20
299 1 0.00
300 2 0.01
304 1 0.00
305 10 0.04
306 167 0.73
307 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (294 bp):
AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTATGT
TTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
TTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAAGCCGAGGT
AATTTCAAATTCTACTTTCAAAAAAATCAACTCATATTGCGAAAGATGAGTTGAGCCTCAAGACA
CATTGAGGTATTTTCAATTTCTACTTTTCAAGAA
Found at i:99267696 original size:159 final size:159
Alignment explanation
Indices: 99267391--99267683 Score: 473
Period size: 159 Copynumber: 1.9 Consensus size: 159
99267381 CTGTTGTCAA
* *
99267391 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
**
99267456 TACTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAT
66 TACTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAT
99267521 TTTCAATTCCTGTTCAATTTATGTTTTTC
131 TTTCAATTCCTGTTCAATTTATGTTTTTC
* *
99267550 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
** ** *
99267615 TGTTTTTC-A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTAT
66 TACTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAT
99267678 TTTCAA
131 TTTCAA
99267684 ATTCTACTTT
Statistics
Matches: 123, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
157 55 0.45
158 1 0.01
159 67 0.54
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (159 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
TACTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAT
TTTCAATTCCTGTTCAATTTATGTTTTTC
Found at i:99267792 original size:232 final size:232
Alignment explanation
Indices: 99267307--99267874 Score: 729
Period size: 232 Copynumber: 2.4 Consensus size: 232
99267297 ATTTTCAATT
** *
99267307 TCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACAAGCTGAGGTAA
1 TCTG-TTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
99267372 TTTCAATTTCTG-TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
64 TTTCAATTTCTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
** * * * *
99267436 ATTGAGGTATTTTCAATTTCTACTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
127 ACCGAGGTATTTTCAAATTCTACTTTTCAAAAAAATCAACTCATATTGCGAAAGATGAGTTGAGC
* *
99267501 CTCAAGACACGTTGAGGTATTTTCAATTCCTGTTCAATTTATG
192 CTCAAGACACGTTGAGGTACTTTCAATTCCTATT--ATTTATG
99267544 --T-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
1 TCTGTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
* ** * *
99267606 TTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCC
65 TTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACC
99267671 GAGGTATTTTCAAATTCTAC-TTTCAAAAAAATCAACTCATATTGCGAAAGATGAGTTGAGCCT-
130 GAGGTATTTTCAAATTCTACTTTTCAAAAAAATCAACTCATATTGCGAAAGATGAGTTGAGCCTC
** * *
99267734 TGGCTCACGTGTTGA-GTCACTTTCAATTTCTATT-TTTATG
195 AAG-ACAC--GTTGAGGT-ACTTTCAATTCCTATTATTTATG
* * * *
99267774 TCTGTTTTCTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTT
1 TCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
* * * *
99267839 TCAATTACTGTTTGGCAAAAACCAACTCATACTGCG
66 TCAATTTCTGTTTGTCAAAAATCAACTCATATTGCG
99267875 TAGTTAAGCC
Statistics
Matches: 293, Mismatches: 29, Indels: 23
0.85 0.08 0.07
Matches are distributed among these distances:
230 7 0.02
231 43 0.15
232 147 0.50
233 87 0.30
234 8 0.03
235 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Consensus pattern (232 bp):
TCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
TCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACCG
AGGTATTTTCAAATTCTACTTTTCAAAAAAATCAACTCATATTGCGAAAGATGAGTTGAGCCTCA
AGACACGTTGAGGTACTTTCAATTCCTATTATTTATG
Found at i:99268188 original size:89 final size:90
Alignment explanation
Indices: 99268021--99268188 Score: 232
Period size: 89 Copynumber: 1.9 Consensus size: 90
99268011 CAATTTATTC
* * * * *
99268021 TTTTCAAATTCTACTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
1 TTTTCAAATTCAACTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCAC
*
99268086 ATGTCGAGGTATTTTCAAAATCTGT
66 ATGTCGAGCTATTTTCAAAATCTGT
* *
99268111 TTTTCAAATT-AAGTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCTCAC
1 TTTTCAAATTCAACTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCAC
*
99268175 GTG-CTGAGCTATTT
66 ATGTC-GAGCTATTT
99268189 CTGTTTTAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
88 1 0.01
89 57 0.84
90 10 0.15
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (90 bp):
TTTTCAAATTCAACTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCAC
ATGTCGAGCTATTTTCAAAATCTGT
Found at i:99268896 original size:22 final size:22
Alignment explanation
Indices: 99268869--99268931 Score: 108
Period size: 22 Copynumber: 2.9 Consensus size: 22
99268859 GCAACCATGA
99268869 AGCAGCCCCATACCTCCACTAC
1 AGCAGCCCCATACCTCCACTAC
*
99268891 AGCAGCCCCATACCCCCACTAC
1 AGCAGCCCCATACCTCCACTAC
*
99268913 AGCAGTCCCATACCTCCAC
1 AGCAGCCCCATACCTCCAC
99268932 AGCCCTCGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.27, C:0.51, G:0.10, T:0.13
Consensus pattern (22 bp):
AGCAGCCCCATACCTCCACTAC
Found at i:99273142 original size:4 final size:4
Alignment explanation
Indices: 99273135--99273160 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
99273125 GTTAATAAAT
99273135 AAAC AAAC AAAC AAAC AAAC AAAC AA
1 AAAC AAAC AAAC AAAC AAAC AAAC AA
99273161 TGAATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.23, G:0.00, T:0.00
Consensus pattern (4 bp):
AAAC
Found at i:99277787 original size:28 final size:28
Alignment explanation
Indices: 99277748--99277804 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
99277738 ACTAGAAGAG
99277748 AAAAGCACTTTGAGATCCAATTCTAATA
1 AAAAGCACTTTGAGATCCAATTCTAATA
*
99277776 AAAAGCACTTTGAGATCCAATTCTGATA
1 AAAAGCACTTTGAGATCCAATTCTAATA
99277804 A
1 A
99277805 TTTCTTCCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (28 bp):
AAAAGCACTTTGAGATCCAATTCTAATA
Found at i:99281890 original size:31 final size:34
Alignment explanation
Indices: 99281840--99281903 Score: 89
Period size: 31 Copynumber: 2.0 Consensus size: 34
99281830 ATAAATAATT
* *
99281840 ATTAATAATTTTATTTAAACA-TAAAT-TTAAAA
1 ATTAATAATTTGATGTAAACATTAAATCTTAAAA
99281872 ATTAA-AATTTGATGTAAACATTAAATCTTAAA
1 ATTAATAATTTGATGTAAACATTAAATCTTAAA
99281904 TTTAAATCAC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 13 0.46
32 10 0.36
33 5 0.18
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.41
Consensus pattern (34 bp):
ATTAATAATTTGATGTAAACATTAAATCTTAAAA
Found at i:99281905 original size:31 final size:30
Alignment explanation
Indices: 99281840--99281909 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 30
99281830 ATAAATAATT
* *
99281840 ATTAATAATTTTATTTAAACATAAATTTAAAA
1 ATTAA-AATTTGATGTAAACATAAATTT-AAA
99281872 ATTAAAATTTGATGTAAACATTAAATCTTAAA
1 ATTAAAATTTGATGTAAACA-TAAAT-TTAAA
*
99281904 TTTAAA
1 ATTAAA
99281910 TCACGAAACT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 13 0.39
32 18 0.55
33 2 0.06
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.41
Consensus pattern (30 bp):
ATTAAAATTTGATGTAAACATAAATTTAAA
Found at i:99296082 original size:35 final size:35
Alignment explanation
Indices: 99296032--99296102 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
99296022 TAGGAAAATG
99296032 TGTAATTGCCCTTTAAAAAACCCCCAAATTAAGGT
1 TGTAATTGCCCTTTAAAAAACCCCCAAATTAAGGT
* *
99296067 TGTAATTGCCTTTTAAAAAACCCCTAAATTAAGGT
1 TGTAATTGCCCTTTAAAAAACCCCCAAATTAAGGT
99296102 T
1 T
99296103 CATAGCAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (35 bp):
TGTAATTGCCCTTTAAAAAACCCCCAAATTAAGGT
Found at i:99298308 original size:59 final size:59
Alignment explanation
Indices: 99298216--99298329 Score: 183
Period size: 59 Copynumber: 1.9 Consensus size: 59
99298206 TTGAAATAAA
*
99298216 TTCTAATTTATTAAATGTAACAATATAAAAATAAATTGTACAAAAATATTCAAAAGAAC
1 TTCTAATTTATTAAATGAAACAATATAAAAATAAATTGTACAAAAATATTCAAAAGAAC
* * * *
99298275 TTCTATTTTATTAAATGAAATAATATAAAAATAATTTGTTCAAAAATATTCAAAA
1 TTCTAATTTATTAAATGAAACAATATAAAAATAAATTGTACAAAAATATTCAAAA
99298330 TAAATTAATG
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
59 50 1.00
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (59 bp):
TTCTAATTTATTAAATGAAACAATATAAAAATAAATTGTACAAAAATATTCAAAAGAAC
Found at i:99298745 original size:18 final size:18
Alignment explanation
Indices: 99298705--99298746 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
99298695 GTGGAAAAAA
* *
99298705 GATACATATAAGGGTTAT
1 GATACACATAAGGGTTAG
*
99298723 AATACACATAAGGGTTAG
1 GATACACATAAGGGTTAG
99298741 GATACA
1 GATACA
99298747 TACCTACCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.43, C:0.10, G:0.21, T:0.26
Consensus pattern (18 bp):
GATACACATAAGGGTTAG
Found at i:99299454 original size:31 final size:32
Alignment explanation
Indices: 99299419--99299479 Score: 97
Period size: 31 Copynumber: 1.9 Consensus size: 32
99299409 AAAAATTATA
* *
99299419 AAAAATATTAATTAA-ATTACAAAAATGAAAT
1 AAAAATATTAAATAATATTAAAAAAATGAAAT
99299450 AAAAATATTAAATAATATTAAAAAAATGAA
1 AAAAATATTAAATAATATTAAAAAAATGAA
99299480 TTTAGCCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 14 0.52
32 13 0.48
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (32 bp):
AAAAATATTAAATAATATTAAAAAAATGAAAT
Found at i:99300630 original size:87 final size:87
Alignment explanation
Indices: 99300538--99300716 Score: 358
Period size: 87 Copynumber: 2.1 Consensus size: 87
99300528 AATCAAAACC
99300538 AATCCAAACCCAAATTATTTAAATTCTGAATAGTTGTATCTGAAATAATTCAAATAAATGATTTA
1 AATCCAAACCCAAATTATTTAAATTCTGAATAGTTGTATCTGAAATAATTCAAATAAATGATTTA
99300603 ACAGATATAATTATGGAATTGT
66 ACAGATATAATTATGGAATTGT
99300625 AATCCAAACCCAAATTATTTAAATTCTGAATAGTTGTATCTGAAATAATTCAAATAAATGATTTA
1 AATCCAAACCCAAATTATTTAAATTCTGAATAGTTGTATCTGAAATAATTCAAATAAATGATTTA
99300690 ACAGATATAATTATGGAATTGT
66 ACAGATATAATTATGGAATTGT
99300712 AATCC
1 AATCC
99300717 TTCCCAGTCG
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 92 1.00
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.35
Consensus pattern (87 bp):
AATCCAAACCCAAATTATTTAAATTCTGAATAGTTGTATCTGAAATAATTCAAATAAATGATTTA
ACAGATATAATTATGGAATTGT
Found at i:99303446 original size:22 final size:19
Alignment explanation
Indices: 99303386--99303435 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
99303376 GTTCACCGGT
* *
99303386 TAATAATGTTAATATTTTATA
1 TAATAAT-TTATTATGTT-TA
*
99303407 TAATAATTTATTGTGTTTA
1 TAATAATTTATTATGTTTA
99303426 TAATAATTTA
1 TAATAATTTA
99303436 CTTCTATGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 12 0.46
20 7 0.27
21 7 0.27
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (19 bp):
TAATAATTTATTATGTTTA
Found at i:99313919 original size:22 final size:22
Alignment explanation
Indices: 99313893--99313948 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
99313883 GATAACAATG
*
99313893 AGCTCGATT-GAGATGAACGGGA
1 AGCTC-ATTCGAGATGAACAGGA
* *
99313915 AGCTCTTTCGAGCTGAACAGGA
1 AGCTCATTCGAGATGAACAGGA
*
99313937 AGCTCATACGAG
1 AGCTCATTCGAG
99313949 CTATTGGTGA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
21 2 0.07
22 26 0.93
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (22 bp):
AGCTCATTCGAGATGAACAGGA
Found at i:99313949 original size:22 final size:22
Alignment explanation
Indices: 99313906--99313950 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
99313896 TCGATTGAGA
* * *
99313906 TGAACGGGAAGCTCTTTCGAGC
1 TGAACAGGAAGCTCATACGAGC
99313928 TGAACAGGAAGCTCATACGAGC
1 TGAACAGGAAGCTCATACGAGC
99313950 T
1 T
99313951 ATTGGTGAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (22 bp):
TGAACAGGAAGCTCATACGAGC
Found at i:99321424 original size:17 final size:18
Alignment explanation
Indices: 99321399--99321436 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
99321389 GGACTGAGTT
*
99321399 GGGCGTGTGGG-CCACAC
1 GGGCATGTGGGCCCACAC
99321416 GGGCATGTGGGCCCACAC
1 GGGCATGTGGGCCCACAC
99321434 GGG
1 GGG
99321437 TAAACCACAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.13, C:0.29, G:0.47, T:0.11
Consensus pattern (18 bp):
GGGCATGTGGGCCCACAC
Found at i:99342837 original size:3 final size:3
Alignment explanation
Indices: 99342829--99342857 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
99342819 TGTAAGTAAA
99342829 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
99342858 AAAGAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:99349251 original size:27 final size:27
Alignment explanation
Indices: 99349221--99349275 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
99349211 ATTGCTTTTT
99349221 CATTTTCTTTCTTTACGATTATCTCAA
1 CATTTTCTTTCTTTACGATTATCTCAA
99349248 CATTTTCTTTCTTTACGATTATCTCAA
1 CATTTTCTTTCTTTACGATTATCTCAA
99349275 C
1 C
99349276 TTACATAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.24, G:0.04, T:0.51
Consensus pattern (27 bp):
CATTTTCTTTCTTTACGATTATCTCAA
Found at i:99350402 original size:43 final size:44
Alignment explanation
Indices: 99350341--99350433 Score: 154
Period size: 43 Copynumber: 2.2 Consensus size: 44
99350331 TCCTAATTGG
99350341 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* *
99350384 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
99350428 -AAAATA
1 GAAAATA
99350434 TTTCTAGAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.28
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:99355135 original size:43 final size:44
Alignment explanation
Indices: 99355074--99355166 Score: 154
Period size: 43 Copynumber: 2.2 Consensus size: 44
99355064 TCCTAATTGG
99355074 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* *
99355117 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAATATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
99355161 -AAAATA
1 GAAAATA
99355167 TTTCTAGAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.14, G:0.05, T:0.29
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:99359155 original size:21 final size:21
Alignment explanation
Indices: 99359129--99359199 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
99359119 TCAGGAACAT
99359129 GGATAAATAGAAAACAGCATA
1 GGATAAATAGAAAACAGCATA
** *
99359150 GGATAAGA-ACCAAGCA-CAATCA
1 GGATAA-ATAGAAAACAGC-AT-A
*
99359172 TGGATAAATAGAAAAGAGCATA
1 -GGATAAATAGAAAACAGCATA
99359194 GGATAA
1 GGATAA
99359200 GAACCAAGCA
Statistics
Matches: 37, Mismatches: 7, Indels: 12
0.66 0.12 0.21
Matches are distributed among these distances:
20 1 0.03
21 19 0.51
22 4 0.11
23 12 0.32
24 1 0.03
ACGTcount: A:0.54, C:0.11, G:0.21, T:0.14
Consensus pattern (21 bp):
GGATAAATAGAAAACAGCATA
Found at i:99359192 original size:44 final size:44
Alignment explanation
Indices: 99359126--99359211 Score: 163
Period size: 44 Copynumber: 2.0 Consensus size: 44
99359116 AATTCAGGAA
99359126 CATGGATAAATAGAAAACAGCATAGGATAAGAACCAAGCACAAT
1 CATGGATAAATAGAAAACAGCATAGGATAAGAACCAAGCACAAT
*
99359170 CATGGATAAATAGAAAAGAGCATAGGATAAGAACCAAGCACA
1 CATGGATAAATAGAAAACAGCATAGGATAAGAACCAAGCACA
99359212 CCCACACAAG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.52, C:0.15, G:0.20, T:0.13
Consensus pattern (44 bp):
CATGGATAAATAGAAAACAGCATAGGATAAGAACCAAGCACAAT
Found at i:99363121 original size:38 final size:38
Alignment explanation
Indices: 99363070--99363145 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
99363060 AACTTAGTTG
**
99363070 GTTCTTGATCTAACTAATTTAATCGGCTAGTCCAATCC
1 GTTCTTGATCTAACTAACCTAATCGGCTAGTCCAATCC
99363108 GTTCTTGATCTAACTAACCTAATCGGCTAGTCCAATCC
1 GTTCTTGATCTAACTAACCTAATCGGCTAGTCCAATCC
99363146 AATTCAATTC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.34
Consensus pattern (38 bp):
GTTCTTGATCTAACTAACCTAATCGGCTAGTCCAATCC
Found at i:99363266 original size:114 final size:114
Alignment explanation
Indices: 99363036--99363258 Score: 376
Period size: 114 Copynumber: 2.0 Consensus size: 114
99363026 GATTCTTAAC
* *
99363036 CAATTCAATGTCCTTCAAACCACTAACTTAGTTGGTTCTTGATCTAACTAATTTAATCGGCTAGT
1 CAATTCAATGTCCTCCAAACCACTAACTTAGTTGGTTCTTGATCTAACTAATCTAATCGGCTAGT
*
99363101 CCAATCCGTTCTTGATCTAACTAACCTAATCGGCTAGTCCAATCCAATT
66 CCAATCCGTTCTTGATCTAACTAACCTAATCAGCTAGTCCAATCCAATT
*
99363150 CAATTCAATGTCCTCCAAACCACTACCTTAGTTGGTT-TTCGATCTAACTAATCTAATCGGCTAG
1 CAATTCAATGTCCTCCAAACCACTAACTTAGTTGGTTCTT-GATCTAACTAATCTAATCGGCTAG
* *
99363214 TCCAATCCGTTCTTGATCTAACTCATCTAATCAGCTAGTCCAATC
65 TCCAATCCGTTCTTGATCTAACTAACCTAATCAGCTAGTCCAATC
99363259 TGATTCAAAC
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
113 2 0.02
114 100 0.98
ACGTcount: A:0.28, C:0.27, G:0.11, T:0.34
Consensus pattern (114 bp):
CAATTCAATGTCCTCCAAACCACTAACTTAGTTGGTTCTTGATCTAACTAATCTAATCGGCTAGT
CCAATCCGTTCTTGATCTAACTAACCTAATCAGCTAGTCCAATCCAATT
Found at i:99363326 original size:22 final size:22
Alignment explanation
Indices: 99363298--99363348 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
99363288 AAAGTTACAT
99363298 ATTTAATTTGTTAATAAAATAA
1 ATTTAATTTGTTAATAAAATAA
*
99363320 ATTTAATTTGTTAATAAAATGA
1 ATTTAATTTGTTAATAAAATAA
99363342 ATTTAAT
1 ATTTAAT
99363349 ATTAATTGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (22 bp):
ATTTAATTTGTTAATAAAATAA
Found at i:99368119 original size:14 final size:15
Alignment explanation
Indices: 99368095--99368132 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
99368085 GGGACTGGGC
99368095 TTTTTCTTTTCTTTT
1 TTTTTCTTTTCTTTT
99368110 TTTTTC-TTTCTTTT
1 TTTTTCTTTTCTTTT
99368124 TTTTT-TTTT
1 TTTTTCTTTT
99368133 TTTGCTGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (15 bp):
TTTTTCTTTTCTTTT
Found at i:99368133 original size:19 final size:19
Alignment explanation
Indices: 99368097--99368132 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
99368087 GACTGGGCTT
99368097 TTTCTTTTCTTTTTTTTTC
1 TTTCTTTTCTTTTTTTTTC
99368116 TTTCTTTT-TTTTTTTTT
1 TTTCTTTTCTTTTTTTTT
99368133 TTTGCTGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (19 bp):
TTTCTTTTCTTTTTTTTTC
Found at i:99368548 original size:8 final size:8
Alignment explanation
Indices: 99368521--99368587 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 8
99368511 AACTTTTAAT
99368521 AAAAATTA
1 AAAAATTA
*
99368529 AAATATT-
1 AAAAATTA
99368536 AAAAATTAA
1 AAAAATT-A
99368545 AAAAATCGTA
1 AAAAAT--TA
99368555 AAAAATATA
1 AAAAAT-TA
*
99368564 AAAATTGTA
1 AAAAAT-TA
99368573 AAAAATTA
1 AAAAATTA
*
99368581 TAAAATT
1 AAAAATT
99368588 TTATAAAGTC
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
7 6 0.12
8 14 0.29
9 20 0.42
10 7 0.15
11 1 0.02
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.28
Consensus pattern (8 bp):
AAAAATTA
Found at i:99368579 original size:10 final size:10
Alignment explanation
Indices: 99368536--99368585 Score: 52
Period size: 10 Copynumber: 5.3 Consensus size: 10
99368526 TTAAAATATT
99368536 AAAAATTA-A
1 AAAAATTATA
**
99368545 AAAAATCGTA
1 AAAAATTATA
99368555 AAAAA-TAT-
1 AAAAATTATA
*
99368563 AAAAATTGTA
1 AAAAATTATA
99368573 AAAAATTATA
1 AAAAATTATA
99368583 AAA
1 AAA
99368586 TTTTATAAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
8 5 0.16
9 9 0.28
10 18 0.56
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (10 bp):
AAAAATTATA
Found at i:99368585 original size:18 final size:18
Alignment explanation
Indices: 99368536--99368587 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
99368526 TTAAAATATT
* *
99368536 AAAAATTAAAAAAATCGTA
1 AAAAATT-ATAAAATTGTA
99368555 AAAAA-TATAAAAATTGTA
1 AAAAATTAT-AAAATTGTA
99368573 AAAAATTATAAAATT
1 AAAAATTATAAAATT
99368588 TTATAAAGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
17 1 0.03
18 20 0.69
19 8 0.28
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (18 bp):
AAAAATTATAAAATTGTA
Found at i:99368870 original size:10 final size:10
Alignment explanation
Indices: 99368855--99368909 Score: 53
Period size: 10 Copynumber: 5.8 Consensus size: 10
99368845 TAAAAAATTC
99368855 TAATTTTTAA
1 TAATTTTTAA
99368865 TAATTTTTAA
1 TAATTTTTAA
*
99368875 T--TTTTTTA
1 TAATTTTTAA
*
99368883 -AATTTTTAT
1 TAATTTTTAA
**
99368892 TAAAATTTAA
1 TAATTTTTAA
99368902 TAATTTTT
1 TAATTTTT
99368910 CTAAAATTTA
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
8 6 0.18
9 5 0.15
10 23 0.68
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:99369561 original size:10 final size:10
Alignment explanation
Indices: 99369548--99369632 Score: 77
Period size: 10 Copynumber: 8.6 Consensus size: 10
99369538 GACATGTGAC
99369548 AAAAATTTAT
1 AAAAATTTAT
**
99369558 AAAAA-AAAT
1 AAAAATTTAT
*
99369567 AAAAATTAAT
1 AAAAATTTAT
99369577 AAAAA-TTAT
1 AAAAATTTAT
*
99369586 AGAAA-TTAT
1 AAAAATTTAT
* *
99369595 TAAATTTTAAT
1 AAAAATTT-AT
99369606 AAAAAATTTAT
1 -AAAAATTTAT
99369617 AAAAATTTAT
1 AAAAATTTAT
99369627 AAAAAT
1 AAAAAT
99369633 AGTAAAAAAA
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
9 20 0.33
10 31 0.51
11 4 0.07
12 6 0.10
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (10 bp):
AAAAATTTAT
Found at i:99369616 original size:22 final size:21
Alignment explanation
Indices: 99369548--99369631 Score: 70
Period size: 19 Copynumber: 4.2 Consensus size: 21
99369538 GACATGTGAC
**
99369548 AAAAATTTATAAAAA-AAAT-
1 AAAAATTTATAAAAATTTATA
*
99369567 AAAAATTAATAAAAA-TTAT-
1 AAAAATTTATAAAAATTTATA
* * *
99369586 AGAAA-TTATTAAATTTTAATA
1 AAAAATTTATAAAAATTT-ATA
99369607 AAAAATTTATAAAAATTTATA
1 AAAAATTTATAAAAATTTATA
99369628 AAAA
1 AAAA
99369632 TAGTAAAAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
18 6 0.12
19 22 0.43
20 2 0.04
21 11 0.22
22 10 0.20
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.33
Consensus pattern (21 bp):
AAAAATTTATAAAAATTTATA
Found at i:99369877 original size:20 final size:19
Alignment explanation
Indices: 99369854--99369907 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 19
99369844 TTGGTATGAT
99369854 AATTTTTATATTTTTTTAC
1 AATTTTTATATTTTTTTAC
*
99369873 GAA-TTTTATATTTCTTTAC
1 -AATTTTTATATTTTTTTAC
99369892 ATATTTTTATAATTTT
1 A-ATTTTTAT-ATTTT
99369908 CTTATGACTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 1 0.03
19 16 0.55
20 8 0.28
21 4 0.14
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.65
Consensus pattern (19 bp):
AATTTTTATATTTTTTTAC
Found at i:99369939 original size:40 final size:40
Alignment explanation
Indices: 99369895--99369987 Score: 100
Period size: 40 Copynumber: 2.3 Consensus size: 40
99369885 TCTTTACATA
99369895 TTTTTATAATTTTCT-TATGACTTTATAAAATTTTATAATT
1 TTTTTATAATTTTCTATAT-ACTTTATAAAATTTTATAATT
* * * *
99369935 TTTTTCT-ATATTTCTATATATTTTATAATATTTTATGATT
1 TTTTTATAAT-TTTCTATATACTTTATAAAATTTTATAATT
* *
99369975 TTTATAAAATTTT
1 TTTTTATAATTTT
99369988 ATAGTTATTT
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
39 2 0.05
40 36 0.84
41 5 0.12
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (40 bp):
TTTTTATAATTTTCTATATACTTTATAAAATTTTATAATT
Found at i:99369977 original size:9 final size:10
Alignment explanation
Indices: 99369916--99369990 Score: 66
Period size: 10 Copynumber: 7.6 Consensus size: 10
99369906 TTCTTATGAC
*
99369916 TTTATAAAAT
1 TTTATAATAT
99369926 TTTATAAT-T
1 TTTATAATAT
* *
99369935 TTTTTCTATAT
1 TTTAT-AATAT
99369946 TTCTAT-ATAT
1 TT-TATAATAT
99369956 TTTATAATAT
1 TTTATAATAT
*
99369966 TTTATGAT-T
1 TTTATAATAT
*
99369975 TTTATAAAAT
1 TTTATAATAT
99369985 TTTATA
1 TTTATA
99369991 GTTATTTTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
9 15 0.28
10 33 0.62
11 3 0.06
12 2 0.04
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (10 bp):
TTTATAATAT
Found at i:99369977 original size:19 final size:19
Alignment explanation
Indices: 99369894--99369989 Score: 79
Period size: 19 Copynumber: 4.9 Consensus size: 19
99369884 TTCTTTACAT
*
99369894 ATTTTTATAATTTTCTTATG
1 ATTTTTATAATATT-TTATG
* * *
99369914 A-CTTTATAAAATTTTATA
1 ATTTTTATAATATTTTATG
* *
99369932 ATTTTTTTCTATATTTCTAT-
1 ATTTTTAT-AATATTT-TATG
99369952 ATATTTTATAATATTTTATG
1 AT-TTTTATAATATTTTATG
*
99369972 ATTTTTATAAAATTTTAT
1 ATTTTTATAATATTTTAT
99369990 AGTTATTTTT
Statistics
Matches: 60, Mismatches: 11, Indels: 11
0.73 0.13 0.13
Matches are distributed among these distances:
18 5 0.08
19 31 0.52
20 16 0.27
21 8 0.13
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.61
Consensus pattern (19 bp):
ATTTTTATAATATTTTATG
Found at i:99381993 original size:21 final size:22
Alignment explanation
Indices: 99381947--99381993 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
99381937 TAGTCCTCTA
*
99381947 ATCAATTCTAATCAATGATTCT
1 ATCAATTCTAATCAATAATTCT
*
99381969 ATCAATT-TAATCCATAACTTC-
1 ATCAATTCTAATCAATAA-TTCT
99381990 ATCA
1 ATCA
99381994 TTTGCTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.38, C:0.21, G:0.02, T:0.38
Consensus pattern (22 bp):
ATCAATTCTAATCAATAATTCT
Found at i:99382235 original size:22 final size:20
Alignment explanation
Indices: 99382210--99382261 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 20
99382200 TCTTTGTAAC
*
99382210 TATTTCTTGTTTTTCATTCTTT
1 TATTTCTT-TTATTCATT-TTT
99382232 TATTTCATTTTATTCATTTTT
1 TATTTC-TTTTATTCATTTTT
99382253 TATTTCTTT
1 TATTTCTTT
99382262 CATTTACTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 3 0.11
21 9 0.32
22 14 0.50
23 2 0.07
ACGTcount: A:0.13, C:0.12, G:0.02, T:0.73
Consensus pattern (20 bp):
TATTTCTTTTATTCATTTTT
Found at i:99382408 original size:3 final size:3
Alignment explanation
Indices: 99382400--99382438 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
99382390 TTGATAAAAT
*
99382400 ATA ATA ATA ATA ATA ATA ATA ACA ATA ATA ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
99382439 ATATCTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:99387761 original size:40 final size:40
Alignment explanation
Indices: 99387724--99387909 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
99387714 GCTACTCGTT
*
99387724 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
99387764 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* **
99387804 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCATA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
99387844 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AACTCGCA
99387885 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
99387910 CATCATTCAA
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 113 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Done.