Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123748673
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5630000 characters in sequence are not A, C, G, or T
File 301 of 373
Found at i:101917371 original size:17 final size:17
Alignment explanation
Indices: 101917335--101917384 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 17
101917325 CCATTCAACA
101917335 TTACATAATTTCACATACTT
1 TTACAT-ATTT-A-ATACTT
101917355 TTACGA-ATTTAATACTT
1 TTAC-ATATTTAATACTT
101917372 TTACATATTTAAT
1 TTACATATTTAAT
101917385 TGACATGTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
16 1 0.04
17 17 0.61
18 1 0.04
19 4 0.14
20 4 0.14
21 1 0.04
ACGTcount: A:0.36, C:0.14, G:0.02, T:0.48
Consensus pattern (17 bp):
TTACATATTTAATACTT
Found at i:101927140 original size:19 final size:18
Alignment explanation
Indices: 101927116--101927158 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
101927106 ACCATGTTTA
101927116 TATTTTA-ACACATGTTAAT
1 TATTTTATA-ACAT-TTAAT
*
101927135 TATTTTATAATATTTAAT
1 TATTTTATAACATTTAAT
101927153 TATTTT
1 TATTTT
101927159 TCGACAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 11 0.50
19 10 0.45
20 1 0.05
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (18 bp):
TATTTTATAACATTTAAT
Found at i:101930017 original size:30 final size:29
Alignment explanation
Indices: 101929983--101930040 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
101929973 CTTTTGAAAA
* *
101929983 TATTTACAAAAAGAGGCATCTAGTTTTTAT
1 TATTTACAAAAAGA-GCAACTAGATTTTAT
*
101930013 TATTTACGAAAAGAGCAACTAGATTTTA
1 TATTTACAAAAAGAGCAACTAGATTTTA
101930041 AAAATGATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (29 bp):
TATTTACAAAAAGAGCAACTAGATTTTAT
Found at i:101963875 original size:43 final size:42
Alignment explanation
Indices: 101963826--101963921 Score: 122
Period size: 43 Copynumber: 2.3 Consensus size: 42
101963816 CATATTCCAT
** *
101963826 ATATGGTCTTACATGTAA-TCTCATATCGATGCCAATAGCCCAG
1 ATATGGTCTTACA-CAAAGTCTCATATCGATGCC-ATAGCACAG
* *
101963869 CTATGGTCTTACACAAAGTCTCATATCGATGCCATATCACAG
1 ATATGGTCTTACACAAAGTCTCATATCGATGCCATAGCACAG
101963911 ATATGGTCTTA
1 ATATGGTCTTA
101963922 AACATAGTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 19 0.41
43 27 0.59
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (42 bp):
ATATGGTCTTACACAAAGTCTCATATCGATGCCATAGCACAG
Found at i:101969378 original size:36 final size:36
Alignment explanation
Indices: 101969331--101969406 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
101969321 AGAGCATATA
*
101969331 TGTCTGAGGCATTTCATCATGTTTGGATATATTACC
1 TGTCTGAGGCATTTCATCACGTTTGGATATATTACC
101969367 TGTCTGAGGCATTTCATCACGTTTGGATATATTACC
1 TGTCTGAGGCATTTCATCACGTTTGGATATATTACC
101969403 TGTC
1 TGTC
101969407 CTTTGACATT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (36 bp):
TGTCTGAGGCATTTCATCACGTTTGGATATATTACC
Found at i:101976328 original size:20 final size:20
Alignment explanation
Indices: 101976286--101976328 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
101976276 GAGGCATCGT
*
101976286 AGTGTAAATAGAGACACTGA
1 AGTGTAAATAGAGACACTAA
**
101976306 AGTGTAAATAGAGGTACTAA
1 AGTGTAAATAGAGACACTAA
101976326 AGT
1 AGT
101976329 CTGAATAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.07, G:0.26, T:0.23
Consensus pattern (20 bp):
AGTGTAAATAGAGACACTAA
Found at i:101981601 original size:30 final size:30
Alignment explanation
Indices: 101981565--101981721 Score: 179
Period size: 30 Copynumber: 5.2 Consensus size: 30
101981555 TTAGTGAGTT
*
101981565 ACACGGCTGGTTGCCACGACCGTGTGACCC
1 ACACGGCTGGTTGGCACGACCGTGTGACCC
* *
101981595 ACACGGCTAGTTGGCACGACCGCGTGACCC
1 ACACGGCTGGTTGGCACGACCGTGTGACCC
* *
101981625 ACACGGCTGGTTGGTACGATCGTGTGACCC
1 ACACGGCTGGTTGGCACGACCGTGTGACCC
* * * *
101981655 ACACAGCCGGTTGGCACGACCGAGTGACCA
1 ACACGGCTGGTTGGCACGACCGTGTGACCC
* * * ** *
101981685 ACATGGCCGGTTGGCACAACTATGTGACCT
1 ACACGGCTGGTTGGCACGACCGTGTGACCC
101981715 ACACGGC
1 ACACGGC
101981722 CTGGACACAC
Statistics
Matches: 106, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 106 1.00
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (30 bp):
ACACGGCTGGTTGGCACGACCGTGTGACCC
Found at i:101982742 original size:17 final size:17
Alignment explanation
Indices: 101982720--101982834 Score: 67
Period size: 17 Copynumber: 6.5 Consensus size: 17
101982710 ATATTATTGT
*
101982720 TTTTATTAGTTAGATTA
1 TTTTATTACTTAGATTA
* *
101982737 TTTTATTTCTT-TATTGA
1 TTTTATTACTTAGATT-A
*
101982754 TTATTATT-CTTATA-TA
1 TT-TTATTACTTAGATTA
*
101982770 TTATTATTAGTTAGATTA
1 TT-TTATTACTTAGATTA
*
101982788 TTTTATTTCTTTATTGATTA
1 TTTTATTAC-TTA--GATTA
101982808 TTATTATT-CTTAGTATTA
1 TT-TTATTACTTAG-ATTA
101982826 TTCTTATTA
1 TT-TTATTA
101982835 GTCATTTTTC
Statistics
Matches: 79, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
16 12 0.15
17 26 0.33
18 25 0.32
19 3 0.04
20 8 0.10
21 5 0.06
ACGTcount: A:0.26, C:0.04, G:0.06, T:0.63
Consensus pattern (17 bp):
TTTTATTACTTAGATTA
Found at i:101982743 original size:48 final size:51
Alignment explanation
Indices: 101982690--101982815 Score: 150
Period size: 51 Copynumber: 2.5 Consensus size: 51
101982680 TACTTATTTA
** * *
101982690 TTTATTTATGTATTTCTTA-TA-TATTAT-TGTTTTTATTAGTTAGATTAT
1 TTTATTTATGTATTGATTATTATTATTATATATTATTATTAGTTAGATTAT
* * *
101982738 TTTATTTCTTTATTGATTATTATTCTTATATATTATTATTAGTTAGATTAT
1 TTTATTTATGTATTGATTATTATTATTATATATTATTATTAGTTAGATTAT
* *
101982789 TTTATTTCTTTATTGATTATTATTATT
1 TTTATTTATGTATTGATTATTATTATT
101982816 CTTAGTATTA
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
48 15 0.22
49 2 0.03
50 5 0.07
51 45 0.67
ACGTcount: A:0.25, C:0.03, G:0.06, T:0.65
Consensus pattern (51 bp):
TTTATTTATGTATTGATTATTATTATTATATATTATTATTAGTTAGATTAT
Found at i:101982757 original size:20 final size:19
Alignment explanation
Indices: 101982732--101982815 Score: 58
Period size: 18 Copynumber: 4.6 Consensus size: 19
101982722 TTATTAGTTA
101982732 GATTATTTTATTTCTTTATT
1 GATTATTTTATTTCTTTA-T
101982752 GATTA--TTA-TTC-TTAT
1 GATTATTTTATTTCTTTAT
**
101982767 -A-TATTATTA-TTAGTTA-
1 GATTATT-TTATTTCTTTAT
101982783 GATTATTTTATTTCTTTATT
1 GATTATTTTATTTCTTTA-T
101982803 GATTATTATTATT
1 GATTATT-TTATT
101982816 CTTAGTATTA
Statistics
Matches: 51, Mismatches: 3, Indels: 19
0.70 0.04 0.26
Matches are distributed among these distances:
13 2 0.04
14 1 0.02
15 1 0.02
16 8 0.16
17 10 0.20
18 12 0.24
20 12 0.24
21 5 0.10
ACGTcount: A:0.26, C:0.04, G:0.06, T:0.64
Consensus pattern (19 bp):
GATTATTTTATTTCTTTAT
Found at i:101982761 original size:3 final size:3
Alignment explanation
Indices: 101982747--101982834 Score: 58
Period size: 3 Copynumber: 29.0 Consensus size: 3
101982737 TTTTATTTCT
* *
101982747 TTA TTGA TTA TTA TTC TTA TATA TTA TTA TTA GTTA -GA TTA TT- TTA
1 TTA TT-A TTA TTA TTA TTA T-TA TTA TTA TTA -TTA TTA TTA TTA TTA
* * *
101982793 TT- TCT- TTA TTGA TTA TTA TTA TTC TTA GTA TTA TTC TTA TTA
1 TTA T-TA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
101982835 GTCATTTTTC
Statistics
Matches: 67, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
2 5 0.07
3 50 0.75
4 12 0.18
ACGTcount: A:0.27, C:0.05, G:0.06, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:101982842 original size:51 final size:51
Alignment explanation
Indices: 101982722--101982842 Score: 165
Period size: 51 Copynumber: 2.4 Consensus size: 51
101982712 ATTATTGTTT
* *
101982722 TTATTAGTTAGATTATTTTATTTCTTTATTGATTATTATTCTTATATATTA
1 TTATTAGTTAGATCATTTTATTTCTTTATTGATTATTATTATTATATATTA
* *
101982773 TTATTAGTTAGATTATTTTATTTCTTTATTGATTATTATTATTCTTAGTATTA
1 TTATTAGTTAGATCATTTTATTTCTTTATTGATTATTATTATT-ATA-TATTA
*
101982826 TTCTTA-TTAG-TCATTTT
1 TTATTAGTTAGATCATTTT
101982843 TCTTTTCTGG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
51 48 0.75
52 6 0.09
53 10 0.16
ACGTcount: A:0.26, C:0.05, G:0.07, T:0.63
Consensus pattern (51 bp):
TTATTAGTTAGATCATTTTATTTCTTTATTGATTATTATTATTATATATTA
Found at i:101988951 original size:17 final size:17
Alignment explanation
Indices: 101988927--101988968 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
101988917 ATTGCATTTG
101988927 TTTATTTTT-TTATTGA
1 TTTATTTTTGTTATTGA
* *
101988943 TTTCTTTTTGTTATTTA
1 TTTATTTTTGTTATTGA
101988960 TTTATTTTT
1 TTTATTTTT
101988969 ATTTCTCTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (17 bp):
TTTATTTTTGTTATTGA
Found at i:101988959 original size:21 final size:21
Alignment explanation
Indices: 101988913--101988966 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
101988903 TGGTTTATCG
*
101988913 ATTTATTGCATTTGTTTATTTT
1 ATTTATTG-ATTTCTTTATTTT
101988935 -TTTATTGATTTCTTT-TTGTT
1 ATTTATTGATTTCTTTATT-TT
*
101988955 ATTTATTTATTT
1 ATTTATTGATTT
101988967 TTATTTCTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 2 0.07
20 9 0.32
21 17 0.61
ACGTcount: A:0.17, C:0.04, G:0.07, T:0.72
Consensus pattern (21 bp):
ATTTATTGATTTCTTTATTTT
Found at i:102015055 original size:40 final size:40
Alignment explanation
Indices: 102014971--102015154 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
102014961 TTGAATGCTG
* * * *
102014971 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
102015010 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
102015051 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
102015091 TCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
102015131 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
102015155 GTATGAGTTA
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 2 0.02
40 112 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:102015108 original size:80 final size:81
Alignment explanation
Indices: 102014971--102015151 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
102014961 TTGAATGCTG
* *
102014971 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* * *
102015035 TGTGCGAGTTATT-AAT
66 CGTGCAAGTT-TTAAAA
**
102015051 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
102015112 ATTCGTGCAAGTTTTAAAA
63 ATTCGTGCAAGTTTTAAAA
102015131 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
102015152 ATTGTATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCAAGTTTTAAAA
Found at i:102018777 original size:15 final size:15
Alignment explanation
Indices: 102018757--102018786 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
102018747 CGAGAGAGAT
102018757 AATAATATAACTTAG
1 AATAATATAACTTAG
102018772 AATAATATAACTTAG
1 AATAATATAACTTAG
102018787 GGATTTCTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (15 bp):
AATAATATAACTTAG
Found at i:102021486 original size:21 final size:20
Alignment explanation
Indices: 102021457--102021512 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 20
102021447 GTAGAGGTTT
*
102021457 ACACGCCCATGTGAAGGCTAC
1 ACACGCCCATGTGAAGG-GAC
*
102021478 ACATGCCCATGTGGAAGGGAC
1 ACACGCCCATGT-GAAGGGAC
*
102021499 ACACACCCATGTGA
1 ACACGCCCATGTGA
102021513 GTAGCCCATG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 2 0.07
21 23 0.77
22 5 0.17
ACGTcount: A:0.30, C:0.30, G:0.25, T:0.14
Consensus pattern (20 bp):
ACACGCCCATGTGAAGGGAC
Found at i:102022281 original size:21 final size:21
Alignment explanation
Indices: 102022255--102022296 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
102022245 ATTTTTTGGG
* *
102022255 AAGAAAGAAGAGAGAAAGAAA
1 AAGAAAAAAAAGAGAAAGAAA
*
102022276 AAGAAAAAAAAGAGCAAGAAA
1 AAGAAAAAAAAGAGAAAGAAA
102022297 GTTTACAGAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.74, C:0.02, G:0.24, T:0.00
Consensus pattern (21 bp):
AAGAAAAAAAAGAGAAAGAAA
Found at i:102025081 original size:13 final size:13
Alignment explanation
Indices: 102025063--102025096 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
102025053 TATTTTATTA
102025063 ATATTTTAATAAG
1 ATATTTTAATAAG
102025076 ATATTTTAATAAG
1 ATATTTTAATAAG
102025089 ATATTTTA
1 ATATTTTA
102025097 TTATTTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (13 bp):
ATATTTTAATAAG
Found at i:102025368 original size:298 final size:301
Alignment explanation
Indices: 102024823--102025428 Score: 1029
Period size: 298 Copynumber: 2.0 Consensus size: 301
102024813 TAGTGCAAAT
* *
102024823 ATTTTAAGGGTGGAATGATCTAGAAACTAAGGAAAATGGATGAATTGGGACTAAATTGAATAGGA
1 ATTTTAAGGGTGGAATGATCTACAAACTAAGAAAAATGGATGAATTGGGACTAAATTGAATAGGA
*
102024888 AAAGAATTATGAGGAACTAAATTATAATTTTATCAAATTATGTGATGATTCAATGATAAAATTTT
66 AAAGAATTATGAGG------ATCATAATTTTATCAAATTATGTGATGATTCAATGATAAAATTTT
*
102024953 AAAAGATCACAAAGGGCAAAATGGTCAATTGGAAGAGAGAGAAAGCTAGAAAGTAATGATGATGT
125 AAAAGATCACAAAGGGCAAAATGGTCAACTGGAAGAGAGAGAAAGCTAGAAAGTAATGATGATGT
102025018 TGATGATATTTTATAATTATTAATTAGATAAATATTATTTTATTAATATTTTAATAAGATATTTT
190 TGATGATATTTTATAATTATTAATTAGATAAATATTATTTTATTAATATTTTAATAAGATATTTT
* *
102025083 AATAAGATATTTTATTATTTTATTATTATTTATTAAATATAAAAGGA
255 AATAAGATATTTTACTATTTTACTATTATTTATTAAATATAAAAGGA
*
102025130 ATTTTAAGGGTGGAATGATTTACAAACTAAGAAAAATGGATGAATTGGGACTAAATTGAATAGGA
1 ATTTTAAGGGTGGAATGATCTACAAACTAAGAAAAATGGATGAATTGGGACTAAATTGAATAGGA
*
102025195 AAAGAATTAT-A-G-TCGTAATTTTATCAAATTATGTGATGATTCAATGATAAAATTTTAAAAGA
66 AAAGAATTATGAGGATCATAATTTTATCAAATTATGTGATGATTCAATGATAAAATTTTAAAAGA
* *
102025257 TCACAAAGGGCAAAATGTTCAACTGGAAGAGAGAGAAATCTAGAAAGTAATGATGATGTTGATGA
131 TCACAAAGGGCAAAATGGTCAACTGGAAGAGAGAGAAAGCTAGAAAGTAATGATGATGTTGATGA
*
102025322 TATTTTATAATTATTAATTAGATAAATATTATTTTATTAATATTTTAGTAAGATATTTTAATAAG
196 TATTTTATAATTATTAATTAGATAAATATTATTTTATTAATATTTTAATAAGATATTTTAATAAG
*
102025387 ATATTTTACTATTTTACTATTATTTATTAAGTATAAAAGGA
261 ATATTTTACTATTTTACTATTATTTATTAAATATAAAAGGA
102025428 A
1 A
102025429 GGAAAGATGA
Statistics
Matches: 287, Mismatches: 12, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
298 213 0.74
305 1 0.00
306 1 0.00
307 72 0.25
ACGTcount: A:0.43, C:0.04, G:0.16, T:0.36
Consensus pattern (301 bp):
ATTTTAAGGGTGGAATGATCTACAAACTAAGAAAAATGGATGAATTGGGACTAAATTGAATAGGA
AAAGAATTATGAGGATCATAATTTTATCAAATTATGTGATGATTCAATGATAAAATTTTAAAAGA
TCACAAAGGGCAAAATGGTCAACTGGAAGAGAGAGAAAGCTAGAAAGTAATGATGATGTTGATGA
TATTTTATAATTATTAATTAGATAAATATTATTTTATTAATATTTTAATAAGATATTTTAATAAG
ATATTTTACTATTTTACTATTATTTATTAAATATAAAAGGA
Found at i:102025379 original size:13 final size:13
Alignment explanation
Indices: 102025361--102025394 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
102025351 TATTTTATTA
*
102025361 ATATTTTAGTAAG
1 ATATTTTAATAAG
102025374 ATATTTTAATAAG
1 ATATTTTAATAAG
102025387 ATATTTTA
1 ATATTTTA
102025395 CTATTTTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (13 bp):
ATATTTTAATAAG
Found at i:102027502 original size:24 final size:24
Alignment explanation
Indices: 102027474--102027525 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
102027464 TTAGTAGGTC
*
102027474 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATGCT
* *
102027498 AAATATATTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATGCT
102027522 AAAT
1 AAAT
102027526 CTTCTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATGCT
Found at i:102031741 original size:40 final size:40
Alignment explanation
Indices: 102031684--102031761 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
102031674 TGCAATACCT
* * *
102031684 TATGGTGTGTAGGGATGGATGGGTCAATTTTATCCCCATA
1 TATGGTGTGCAGAGATGGATAGGTCAATTTTATCCCCATA
* *
102031724 TATGGTGTGCAGAGATGGGTAGGTCGATTTTATCCCCA
1 TATGGTGTGCAGAGATGGATAGGTCAATTTTATCCCCA
102031762 CATGGTGTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.22, C:0.14, G:0.31, T:0.33
Consensus pattern (40 bp):
TATGGTGTGCAGAGATGGATAGGTCAATTTTATCCCCATA
Found at i:102044114 original size:14 final size:14
Alignment explanation
Indices: 102044095--102044122 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
102044085 TAAATACTTG
102044095 ATTTGTTCTTAATT
1 ATTTGTTCTTAATT
102044109 ATTTGTTCTTAATT
1 ATTTGTTCTTAATT
102044123 CTTGCTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.64
Consensus pattern (14 bp):
ATTTGTTCTTAATT
Found at i:102044943 original size:80 final size:80
Alignment explanation
Indices: 102044823--102044983 Score: 286
Period size: 80 Copynumber: 2.0 Consensus size: 80
102044813 TAATTTTTAT
** * *
102044823 TACTTTAGCCATTTATTTTATTGCAATTTAAATTTAAATTTAGTTTTGTTAATTTTACTAAATTT
1 TACTTTAGCCATTTATTTTATTAAAATTAAAATTAAAATTTAGTTTTGTTAATTTTACTAAATTT
102044888 TCTTTTGTTTTCTTC
66 TCTTTTGTTTTCTTC
102044903 TACTTTAGCCATTTATTTTATTAAAATTAAAATTAAAATTTAGTTTTGTTAATTTTACTAAATTT
1 TACTTTAGCCATTTATTTTATTAAAATTAAAATTAAAATTTAGTTTTGTTAATTTTACTAAATTT
102044968 TCTTTTGTTTTCTTC
66 TCTTTTGTTTTCTTC
102044983 T
1 T
102044984 GACAAGTTTT
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.27, C:0.09, G:0.06, T:0.58
Consensus pattern (80 bp):
TACTTTAGCCATTTATTTTATTAAAATTAAAATTAAAATTTAGTTTTGTTAATTTTACTAAATTT
TCTTTTGTTTTCTTC
Found at i:102045100 original size:30 final size:30
Alignment explanation
Indices: 102045066--102045123 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
102045056 ACAGCTCGGA
102045066 GAAACCAAAGAGAAAAAAGGCGAAACCTCC
1 GAAACCAAAGAGAAAAAAGGCGAAACCTCC
102045096 GAAACCAAAGAGAAAAAAGGCGAAACCT
1 GAAACCAAAGAGAAAAAAGGCGAAACCT
102045124 AACCCGAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.55, C:0.21, G:0.21, T:0.03
Consensus pattern (30 bp):
GAAACCAAAGAGAAAAAAGGCGAAACCTCC
Found at i:102049925 original size:47 final size:47
Alignment explanation
Indices: 102049854--102050399 Score: 903
Period size: 47 Copynumber: 11.6 Consensus size: 47
102049844 CCCTTCGGGA
* * * * * *
102049854 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
102049901 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
102049948 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102049995 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
102050042 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
102050089 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102050136 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
102050183 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
102050232 CTTATCTCATATATTCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
102050279 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102050326 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
102050373 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
102050400 TATTCAAATA
Statistics
Matches: 473, Mismatches: 24, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 429 0.91
49 44 0.09
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:102049957 original size:22 final size:22
Alignment explanation
Indices: 102049929--102050004 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
102049919 TTTCACATTC
102049929 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
102049951 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
102049975 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
102049998 ATCACAT
1 ATCACAT
102050005 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:102056698 original size:40 final size:40
Alignment explanation
Indices: 102056641--102056870 Score: 327
Period size: 40 Copynumber: 5.8 Consensus size: 40
102056631 ATTTGAATAC
* * * *
102056641 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGA-TAT
102056681 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
102056721 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
102056761 ATCCGGGCTAAGACCCGAAGGCATTTGTACGAGATGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
102056801 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
102056841 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
102056871 TTGTGGTTAT
Statistics
Matches: 174, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 171 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:102066158 original size:11 final size:11
Alignment explanation
Indices: 102066142--102066173 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
102066132 CATAAATAAT
102066142 CATACATTTCA
1 CATACATTTCA
102066153 CATACATTTCA
1 CATACATTTCA
102066164 CATACATTTC
1 CATACATTTC
102066174 CCAATTTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.38
Consensus pattern (11 bp):
CATACATTTCA
Found at i:102069112 original size:29 final size:30
Alignment explanation
Indices: 102069012--102069158 Score: 135
Period size: 30 Copynumber: 5.0 Consensus size: 30
102069002 CAGTTACATC
102069012 GATGGTCATCACCATCCCTTTTCATAATTT
1 GATGGTCATCACCATCCCTTTTCATAATTT
* * *
102069042 GATAGCCGA--AGCTATCCCTTTTCATAATTT
1 GATGGTC-ATCA-CCATCCCTTTTCATAATTT
* *
102069072 GATGGTCGTCACCATCCCTTTTCAT-AGTT
1 GATGGTCATCACCATCCCTTTTCATAATTT
*
102069101 GATGGTCATCACCAT-CATTTTCCATAATTT
1 GATGGTCATCACCATCCCTTTT-CATAATTT
* * *
102069131 GATAGTGA--AGCTATCCCTTTTCATAATT
1 GATGGTCATCA-CCATCCCTTTTCATAATT
102069159 CAGTGATCGT
Statistics
Matches: 94, Mismatches: 15, Indels: 17
0.75 0.12 0.13
Matches are distributed among these distances:
28 6 0.06
29 31 0.33
30 55 0.59
31 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (30 bp):
GATGGTCATCACCATCCCTTTTCATAATTT
Found at i:102083315 original size:14 final size:15
Alignment explanation
Indices: 102083296--102083352 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
102083286 AATCTTTAAG
102083296 GATATG-CAATCTTA
1 GATATGACAATCTTA
102083310 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
102083327 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
102083346 GATATGA
1 GATATGA
102083353 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:102083337 original size:36 final size:38
Alignment explanation
Indices: 102083296--102083374 Score: 126
Period size: 36 Copynumber: 2.1 Consensus size: 38
102083286 AATCTTTAAG
102083296 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
102083332 GATATGCAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
102083372 GAT
1 GAT
102083375 CTTGTAATCT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
40 9 0.23
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:102083343 original size:19 final size:19
Alignment explanation
Indices: 102083296--102083374 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
102083286 AATCTTTAAG
102083296 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
102083315 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
102083332 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
102083351 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
102083372 GAT
1 GAT
102083375 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:102090888 original size:43 final size:43
Alignment explanation
Indices: 102090832--102090946 Score: 132
Period size: 38 Copynumber: 2.8 Consensus size: 43
102090822 AATTCATCAC
* * *
102090832 CTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGAT
* ** *
102090875 CTTATCTGCCTAAGCAGTAAGGTAACAGG-----TTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGAT
102090913 CTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAA
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAA
102090947 GTATAGCAGA
Statistics
Matches: 56, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
38 33 0.59
43 23 0.41
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (43 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGAT
Found at i:102091334 original size:175 final size:174
Alignment explanation
Indices: 102091031--102091885 Score: 974
Period size: 175 Copynumber: 4.9 Consensus size: 174
102091021 GAACAAATCG
* * * *
102091031 AAGA-AACAGATTTGGCATCTCCATACTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACC
1 AAGATAACAGATCTGGCATCTCCAT-TTCGACGGAGAGCAG---G--TACATAGCAGATCTAACC
** * * *
102091095 TTTTGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATCCCTGTGTTTACAGGGAACAA
60 TTCAGATATTTT-AC-T-GAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAA
* * * *
102091160 ATCGAAGACATAGCAGATCTGATTTTCGGATGTTTTCACACCAAAGAAGATCC
122 ATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCC
* *
102091213 AAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGTAGGTACATAGCAGATCTAACCTTTAGA
1 AAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGATCTAACCTTCAGA
*
102091278 TATTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGA
66 TATTT-TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA
102091343 CATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCC
130 CATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCC
* * * * * *
102091388 AAGATAACAGATCTGGCATCTCTATTTCGATGGAGAGCATGCACATAGCAGGTCTAACCTTCAAA
1 AAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGATCTAACCTTCAGA
* * * * * *
102091453 TTTTTATATTAAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGGAACAAATCAAAGA
66 TATTT-TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA
*
102091518 CATAGCAGATTTGACTTTCCGATGTTCTCACACCAAAGCAGATCC
130 CATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCC
*
102091563 AAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGA
1 AAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGATCTAACCTTCAGA
** * *
102091628 TGATTTTACTGAAATAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGA
66 T-ATTTTACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA
* * * * **
102091693 CATAACAGATTTGGCTTTCACG-TGTT-T-ACGCTGAAGCAGATCC
130 CATAGCAGATTTGACTTTC-GGATGTTCTCACACCAAAGCAGATCC
* *** * * * *
102091736 AAGAT----GATTTGGCATTCTTGTGTTTAC-AAGGAACAAATCAAAG-ACATAGCAGATCTAAC
1 AAGATAACAGATCTGGCA-TC-TCCATTT-CGACGG---AGAGC-AGGTACATAGCAGATCTAAC
* *
102091795 CTTCAGATGATTTTACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAA
59 CTTCAGAT-ATTTTACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAA
* * *
102091860 TCAAAGACACAGCAGATTTGGCTTTC
123 TCGAAGACATAGCAGATTTGACTTTC
102091886 ACGTGTTTAC
Statistics
Matches: 598, Mismatches: 64, Indels: 30
0.86 0.09 0.04
Matches are distributed among these distances:
169 8 0.01
170 2 0.00
171 7 0.01
172 1 0.00
173 18 0.03
174 106 0.18
175 385 0.64
176 6 0.01
177 27 0.05
178 1 0.00
179 1 0.00
182 17 0.03
183 19 0.03
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (174 bp):
AAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGATCTAACCTTCAGA
TATTTTACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGAC
ATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCC
Found at i:102091995 original size:87 final size:87
Alignment explanation
Indices: 102091643--102092001 Score: 422
Period size: 87 Copynumber: 4.1 Consensus size: 87
102091633 TTACTGAAAT
* * * * *
102091643 AGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACATAACAGATTTGGC
1 AGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCAAAGACATAGCAGATCTGAC
102091708 TTTCACGTGTTTACGCTGAAGC
66 TTTCACGTGTTTACGCTGAAGC
* * *
102091730 AGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAGACATAGCAGATCTAAC
1 AGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCAAAGACATAGCAGATCTGAC
*
102091795 CTTCA-GATGATTTTA--CTGAAGC
66 TTTCACG-TG--TTTACGCTGAAGC
* * * *
102091817 AGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCAAAGACACAGCAGATTTGGC
1 AGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCAAAGACATAGCAGATCTGAC
* *
102091882 TTTCACGTGTTTACGCTAAAGT
66 TTTCACGTGTTTACGCTGAAGC
* * * * * *
102091904 AGATCCAAGATGATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGTAGATCTGAC
1 AGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCAAAGACATAGCAGATCTGAC
* *
102091969 ATTC-CTGTGCTTACAGC-GAAGC
66 TTTCAC-GTGTTTAC-GCTGAAGC
*
102091991 AGATCAAAGAT
1 AGATCCAAGAT
102092002 TTTAACATGG
Statistics
Matches: 230, Mismatches: 34, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
85 4 0.02
86 2 0.01
87 217 0.94
88 3 0.01
89 4 0.02
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (87 bp):
AGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCAAAGACATAGCAGATCTGAC
TTTCACGTGTTTACGCTGAAGC
Found at i:102091995 original size:174 final size:174
Alignment explanation
Indices: 102091255--102091972 Score: 570
Period size: 175 Copynumber: 4.1 Consensus size: 174
102091245 GAGAGTAGGT
* * * *
102091255 ACATAGCAGATCTAACCTTTAGAT-ATTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
1 ACATAGCAGATCTAACATTCAGATGA-TTACACTGAAGCAGATCCAAGATGATTTGGCATCCTTG
* * * * * * * * *
102091319 TGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTC-GGATGTTCTCACACCAAAGCA
65 TGTTCACAAGGAGCAAATCAAAGACACAACAGATTTGGCTTTCACG-TGTT-T-ACGCTAAAGCA
* * * * * * *
102091383 GATCCAAGATAACAGATCTGGCAT--CTCTATTT-CGATGG---AGAGC-ATG
127 GATCCAAGAT----GATTTGGCATCCCTGTGTTTAC-AAGGAACAAATCAAAG
* * * ** * * * * *
102091429 CACATAGCAGGTCTAACCTTCAAATTTTTATATTAAAGCAGATCCAAGATGATTTGGAATTCTTG
1 -ACATAGCAGATCTAACATTCAGATGATTACACTGAAGCAGATCCAAGATGATTTGGCATCCTTG
* * * * * * *
102091494 TGTTTACAAGGAACAAATCAAAGACATAGCAGATTTGACTTTC-CGATGTTCTCACACCAAAGCA
65 TGTTCACAAGGAGCAAATCAAAGACACAACAGATTTGGCTTTCACG-TGTT-T-ACGCTAAAGCA
* * * * * * *
102091558 GATCCAAGATAACAGATCTGGCATCTCC---ATTT-CGACGG---AGAGCAGAT
127 GATCCAAGAT----GATTTGGCATC-CCTGTGTTTAC-AAGGAACAAATCAAAG
* ** **
102091605 ACATAGCAGATCTAACCTTCAGATGATTTTACTGAAATAGATCCAAGATGATTTGGCATCCTTGT
1 ACATAGCAGATCTAACATTCAGATGATTACACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
* * *
102091670 GTTCACAAGGAGCAAATCGAAGACATAACAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATC
66 GTTCACAAGGAGCAAATCAAAGACACAACAGATTTGGCTTTCACGTGTTTACGCTAAAGCAGATC
* *
102091735 CAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAG
131 CAAGATGATTTGGCATCCCTGTGTTTACAAGGAACAAATCAAAG
* **
102091779 ACATAGCAGATCTAACCTTCAGATGATTTTACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
1 ACATAGCAGATCTAACATTCAGATGATTACACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
* *
102091844 GTTCACAAGGAGCAAATCAAAGACACAGCAGATTTGGCTTTCACGTGTTTACGCTAAAGTAGATC
66 GTTCACAAGGAGCAAATCAAAGACACAACAGATTTGGCTTTCACGTGTTTACGCTAAAGCAGATC
* * *
102091909 CAAGATGATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAG
131 CAAGATGATTTGGCATCCCTGTGTTTACAAGGAACAAATCAAAG
* *
102091953 ACATAGTAGATCTGACATTC
1 ACATAGCAGATCTAACATTC
102091973 CTGTGCTTAC
Statistics
Matches: 474, Mismatches: 56, Indels: 27
0.85 0.10 0.05
Matches are distributed among these distances:
168 1 0.00
169 9 0.02
171 6 0.01
172 1 0.00
173 18 0.04
174 185 0.39
175 251 0.53
176 2 0.00
178 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (174 bp):
ACATAGCAGATCTAACATTCAGATGATTACACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
GTTCACAAGGAGCAAATCAAAGACACAACAGATTTGGCTTTCACGTGTTTACGCTAAAGCAGATC
CAAGATGATTTGGCATCCCTGTGTTTACAAGGAACAAATCAAAG
Found at i:102092570 original size:14 final size:15
Alignment explanation
Indices: 102092551--102092607 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
102092541 AATTTTTAAG
102092551 GATATG-CAATCTTA
1 GATATGACAATCTTA
102092565 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
102092582 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
102092601 GATATGA
1 GATATGA
102092608 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:102092591 original size:36 final size:38
Alignment explanation
Indices: 102092551--102092629 Score: 126
Period size: 36 Copynumber: 2.1 Consensus size: 38
102092541 AATTTTTAAG
102092551 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
102092587 GATATGCAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
102092627 GAT
1 GAT
102092630 CTTGTAATCT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
40 9 0.23
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:102092598 original size:19 final size:19
Alignment explanation
Indices: 102092551--102092629 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
102092541 AATTTTTAAG
102092551 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
102092570 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
102092587 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
102092606 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
102092627 GAT
1 GAT
102092630 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:102096493 original size:79 final size:79
Alignment explanation
Indices: 102096362--102096519 Score: 307
Period size: 79 Copynumber: 2.0 Consensus size: 79
102096352 TACATACGAG
*
102096362 TCTGCTCTGTCATAGCCAGATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTG
1 TCTGCTCCGTCATAGCCAGATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTG
102096427 TCATTAGAGGTTTT
66 TCATTAGAGGTTTT
102096441 TCTGCTCCGTCATAGCCAGATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTG
1 TCTGCTCCGTCATAGCCAGATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTG
102096506 TCATTAGAGGTTTT
66 TCATTAGAGGTTTT
102096520 CTTGGTGCCG
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (79 bp):
TCTGCTCCGTCATAGCCAGATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTG
TCATTAGAGGTTTT
Found at i:102096555 original size:79 final size:79
Alignment explanation
Indices: 102096381--102096555 Score: 219
Period size: 79 Copynumber: 2.2 Consensus size: 79
102096371 TCATAGCCAG
* *
102096381 ATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTGTCATTAGAGGTTTTTCTGC
1 ATTTACTCTAGAAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTGTCATTAGAGGTTTTTCTGC
* * * *
102096446 TCCGTCATAGCCAG
66 TCCGACAAAGCAAA
* *
102096460 ATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTGTCATTAGAGG-TTTTCTTG
1 ATTTACTCTAGAAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTGTCATTAGAGGTTTTTC-TG
* *
102096524 GTGCCGACAAAGTAAA
65 CT-CCGACAAAGCAAA
*
102096540 ATTT-CTTTAGAAAAAG
1 ATTTACTCTAGAAAAAG
102096556 GGATATTAGA
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 5 0.06
79 68 0.80
80 12 0.14
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (79 bp):
ATTTACTCTAGAAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTGTCATTAGAGGTTTTTCTGC
TCCGACAAAGCAAA
Found at i:102100223 original size:64 final size:64
Alignment explanation
Indices: 102100122--102100250 Score: 240
Period size: 64 Copynumber: 2.0 Consensus size: 64
102100112 TGAGGGTAAC
* *
102100122 ACACATATGACGAGGTCATTGGACAAAGCAGTTGGATGAATTAATTTCGTAAAGAGTATACAAT
1 ACACACATGACGAGGCCATTGGACAAAGCAGTTGGATGAATTAATTTCGTAAAGAGTATACAAT
102100186 ACACACATGACGAGGCCATTGGACAAAGCAGTTGGATGAATTAATTTCGTAAAGAGTATACAAT
1 ACACACATGACGAGGCCATTGGACAAAGCAGTTGGATGAATTAATTTCGTAAAGAGTATACAAT
102100250 A
1 A
102100251 AGGAGTTTTC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.25
Consensus pattern (64 bp):
ACACACATGACGAGGCCATTGGACAAAGCAGTTGGATGAATTAATTTCGTAAAGAGTATACAAT
Found at i:102101111 original size:24 final size:24
Alignment explanation
Indices: 102101084--102101135 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
102101074 TTAAAGTGAT
102101084 TATTT-TAATATTAAATTAATATAA
1 TATTTATAAT-TTAAATTAATATAA
* * *
102101108 TATTTATCATTTATATTAATTTAA
1 TATTTATAATTTAAATTAATATAA
102101132 TATT
1 TATT
102101136 AGAGTGGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 21 0.88
25 3 0.12
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (24 bp):
TATTTATAATTTAAATTAATATAA
Found at i:102102059 original size:31 final size:31
Alignment explanation
Indices: 102102024--102102084 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 31
102102014 TATTATATAT
102102024 AAATAT-TCAATCGGTTCGATTAATTTTTTAG
1 AAATATATCAATCGG-TCGATTAATTTTTTAG
*
102102055 AAATATAAATTAATCGGTCGATTAATTTTT
1 AAATAT--ATCAATCGGTCGATTAATTTTT
102102085 GATATGTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 6 0.23
33 13 0.50
34 7 0.27
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.44
Consensus pattern (31 bp):
AAATATATCAATCGGTCGATTAATTTTTTAG
Found at i:102102820 original size:58 final size:58
Alignment explanation
Indices: 102102758--102102873 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
102102748 TGCGAATATA
102102758 TTGGGCATACGAACTTCAAGAAACCCAAAAAGATATTTGGGTCGACCAAATATGGTGG
1 TTGGGCATACGAACTTCAAGAAACCCAAAAAGATATTTGGGTCGACCAAATATGGTGG
102102816 TTGGGCATACGAACTTCAAGAAACCCAAAAAGATATTTGGGTCGACCAAATATGGTGG
1 TTGGGCATACGAACTTCAAGAAACCCAAAAAGATATTTGGGTCGACCAAATATGGTGG
102102874 GAAGGGATAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.22
Consensus pattern (58 bp):
TTGGGCATACGAACTTCAAGAAACCCAAAAAGATATTTGGGTCGACCAAATATGGTGG
Found at i:102105701 original size:15 final size:16
Alignment explanation
Indices: 102105683--102105712 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
102105673 GTTAAGGTTT
102105683 TTTA-GGATTTTAGGG
1 TTTAGGGATTTTAGGG
102105698 TTTAGGGATTTTAGG
1 TTTAGGGATTTTAGG
102105713 AAAAAAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (16 bp):
TTTAGGGATTTTAGGG
Found at i:102105810 original size:34 final size:36
Alignment explanation
Indices: 102105767--102105846 Score: 103
Period size: 38 Copynumber: 2.2 Consensus size: 36
102105757 AATACTAAAT
*
102105767 ATTAAATTA-GA-G-TTTAGGGTATTAGGGTTAATTG
1 ATTAAATTAGGATGATTTAGGGT-TTAAGGTTAATTG
102105801 ATTAAATTAGGGATTGATTTAGGGTTTAAGGTTAATTG
1 ATTAAATTA-GGA-TGATTTAGGGTTTAAGGTTAATTG
102105839 ATTAAATT
1 ATTAAATT
102105847 TAGGGTTAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
34 9 0.22
36 2 0.05
38 21 0.52
39 8 0.20
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.42
Consensus pattern (36 bp):
ATTAAATTAGGATGATTTAGGGTTTAAGGTTAATTG
Found at i:102105853 original size:20 final size:20
Alignment explanation
Indices: 102105788--102105860 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
102105778 GTTTAGGGTA
102105788 TTAGGGTTAATTGATTAAA-
1 TTAGGGTTAATTGATTAAAT
**
102105807 TTAGGG---ATTGATTTAGGGT
1 TTAGGGTTAATTGA-TTA-AAT
*
102105826 TTAAGGTTAATTGATTAAAT
1 TTAGGGTTAATTGATTAAAT
102105846 TTAGGGTTAATTGAT
1 TTAGGGTTAATTGAT
102105861 ACATAATGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
16 5 0.12
17 3 0.07
19 11 0.26
20 15 0.36
21 3 0.07
22 5 0.12
ACGTcount: A:0.32, C:0.00, G:0.25, T:0.44
Consensus pattern (20 bp):
TTAGGGTTAATTGATTAAAT
Found at i:102106622 original size:126 final size:126
Alignment explanation
Indices: 102106396--102106777 Score: 595
Period size: 126 Copynumber: 3.0 Consensus size: 126
102106386 TTTCTGCAAG
* * * *
102106396 AATAATTCTGAGCT-GACGTTTCTAAACAAATAGCGTCGAAAAACGCTTCAAGCAGGATGCATTA
1 AATAATTCTGAG-TAGACGTTTCTGAACAAATAGTGTCG-AAAACGCTTCAAGCAGGATGCACTG
*
102106460 TCAGCAAAATTTCTGGAAAAAGCTCCCACATGGACGCTCTTTTGTTACAATAGTTCGTAGAAA
64 TCAGCAAAATTTCTGGAAAAAGCTCCCACATGGACGCTCTTTTGCTACAATAGTTCGTAGAAA
**
102106523 AATAATTCTGAGTAGATATTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
*
102106588 AGCAAAATTTCTGGAAAAAGCTCCCACATGGACGCTCTTTTACTACAATAGTTCGTAGAAA
66 AGCAAAATTTCTGGAAAAAGCTCCCACATGGACGCTCTTTTGCTACAATAGTTCGTAGAAA
* * *
102106649 AATAATTCTGAGTAGACGTTTTTGAACAAATAGTGTCGAAAAAGCTTCAAGCATGATGCACTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
* * * * *
102106714 ATCAAAACTTCAGAAAAAAGCTCCCACATGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTGGAAAAAGCTCCCACATGGACGCTCTTTTGCTACAATAGTTCGTAGAAA
102106775 AAT
1 AAT
102106778 GAGGCTATAA
Statistics
Matches: 235, Mismatches: 19, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
126 203 0.86
127 32 0.14
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (126 bp):
AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
AGCAAAATTTCTGGAAAAAGCTCCCACATGGACGCTCTTTTGCTACAATAGTTCGTAGAAA
Found at i:102111804 original size:27 final size:27
Alignment explanation
Indices: 102111774--102111951 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
102111764 ATATTGAGTC
* * * *
102111774 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
102111801 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
102111828 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
102111856 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
102111883 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
102111910 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
102111937 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
102111952 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:102111913 original size:82 final size:81
Alignment explanation
Indices: 102111795--102111950 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
102111785 TGCTATATAA
* *
102111795 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
102111860 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
102111877 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
102111941 CACTTAGTGC
65 CACTTAGTGC
102111951 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:102119930 original size:27 final size:27
Alignment explanation
Indices: 102119900--102120077 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
102119890 ATATTGAGTC
* * * *
102119900 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
102119927 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
102119954 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
102119982 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
102120009 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
102120036 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
102120063 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
102120078 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:102120039 original size:82 final size:81
Alignment explanation
Indices: 102119921--102120076 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
102119911 TGCTATATAA
* *
102119921 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
102119986 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
102120003 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
102120067 CACTTAGTGC
65 CACTTAGTGC
102120077 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:102123457 original size:48 final size:47
Alignment explanation
Indices: 102123327--102123453 Score: 177
Period size: 48 Copynumber: 2.7 Consensus size: 47
102123317 ATGCAAACAT
**
102123327 CATAAATGAAAAAAAATCAAGCAGTATTGAAATTGTAATTATAATTG
1 CATAAATGAAAAAAAATCAAATAGTATTGAAATTGTAATTATAATTG
*
102123374 CATAAATGAATAAAATATCAAATAGTATTGCAAATT-TAATTA-AATTTG
1 CATAAATGAA-AAAAAATCAAATAGTATTG-AAATTGTAATTATAA-TTG
*
102123422 CATAAATTAAAAAAAATCAAATAGTATTGAAA
1 CATAAATGAAAAAAAATCAAATAGTATTGAAA
102123454 AATTAAAATT
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
46 3 0.04
47 30 0.42
48 34 0.47
49 5 0.07
ACGTcount: A:0.54, C:0.06, G:0.09, T:0.31
Consensus pattern (47 bp):
CATAAATGAAAAAAAATCAAATAGTATTGAAATTGTAATTATAATTG
Found at i:102123613 original size:11 final size:11
Alignment explanation
Indices: 102123594--102123625 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
102123584 TTTTAAACAA
*
102123594 AGAAATTTGAT
1 AGAATTTTGAT
102123605 AGAATTTTGAT
1 AGAATTTTGAT
102123616 AGAATTTTGA
1 AGAATTTTGA
102123626 GAAAAATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (11 bp):
AGAATTTTGAT
Found at i:102138902 original size:46 final size:45
Alignment explanation
Indices: 102138697--102138907 Score: 169
Period size: 46 Copynumber: 4.5 Consensus size: 45
102138687 AAGCTGACGC
* * *
102138697 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCACAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGC-T-TATATCTC-AGGCCGATG
* * ** * * *
102138745 C-TTTCCCAGACATGCCTTACACTATCTCTA-GTCTCAATGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCT-TATATCTC-AGGCCGATG
*
102138790 CAAGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTT--ATATCTC-AGGCCGATG
* * *
102138838 CATGTCCCAAACACGTCTTACACTGGCTCT-TATGCT-ATGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCT-TATAT-CTCA-GGCCGATG
102138884 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
102138908 AGCACACATA
Statistics
Matches: 132, Mismatches: 24, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
45 14 0.11
46 56 0.42
47 24 0.18
48 37 0.28
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTTATATCTCAGGCCGATG
Found at i:102140761 original size:23 final size:22
Alignment explanation
Indices: 102140731--102140774 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
102140721 TATCAATTCA
*
102140731 TAAATAAATTCATACCAAAACT
1 TAAATAAAATCATACCAAAACT
*
102140753 TAAACTAAAATCATACCTAAAC
1 TAAA-TAAAATCATACCAAAAC
102140775 ATACGATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.55, C:0.20, G:0.00, T:0.25
Consensus pattern (22 bp):
TAAATAAAATCATACCAAAACT
Found at i:102141413 original size:43 final size:42
Alignment explanation
Indices: 102141359--102141465 Score: 135
Period size: 43 Copynumber: 2.5 Consensus size: 42
102141349 AACATATATA
102141359 ATGCCAATGTCCCAGACATGGTATTACATGTAA-TCAAACATCG
1 ATGCCAATGTCCCAGACATGGTATTACATG-AAGTCAAACA-CG
* * * * * *
102141402 ATGCCACTGTCCCAGATAGGGTCTTACATGAAGTCAGATACG
1 ATGCCAATGTCCCAGACATGGTATTACATGAAGTCAAACACG
102141444 ATGCCAATGTCCCAGACATGGT
1 ATGCCAATGTCCCAGACATGGT
102141466 CGTAAAGCAA
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
42 23 0.43
43 31 0.57
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTATTACATGAAGTCAAACACG
Found at i:102145248 original size:47 final size:47
Alignment explanation
Indices: 102145174--102145347 Score: 219
Period size: 47 Copynumber: 3.7 Consensus size: 47
102145164 GTGGTAAGGT
* *
102145174 GCCGGTGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAA
* * * * *
102145221 GTCGATGCCATGTCACATACATGGTCTTACACTAACT-ATCATCTCGCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA-CATCTC-AA
* *
102145269 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAA
102145314 TGCCGATGCCATGTCCCAGACATGGTCTTACACT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACT
102145348 GCCTCTCATA
Statistics
Matches: 107, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
45 1 0.01
46 26 0.24
47 63 0.59
48 17 0.16
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.26
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAA
Found at i:102145343 original size:94 final size:93
Alignment explanation
Indices: 102145182--102145396 Score: 270
Period size: 94 Copynumber: 2.3 Consensus size: 93
102145172 GTGCCGGTGC
* * *
102145182 CATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCACATACATGGTC
1 CATGTCCCAGACAT-GTCTTACACTAGCTCACATCTCAAGCCGATGCCATGTCACAGACATGGTC
*
102145247 TTACACTAACTATCAT-CTCGCAGCCGATG
65 TTACACTAACTATCATAAT-GCAGCCGATG
* * *
102145276 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCTCACATCTCAA-GCCGATGCCATGTCACAGACATGGTC
** * ** *
102145341 TTACACTGCCTCTCATAATGTGGCTGATG
65 TTACACTAACTATCATAATGCAGCCGATG
*
102145370 CATGTGCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
102145397 CAACAACAAC
Statistics
Matches: 105, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
93 21 0.20
94 83 0.79
95 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCTCACATCTCAAGCCGATGCCATGTCACAGACATGGTCT
TACACTAACTATCATAATGCAGCCGATG
Found at i:102145374 original size:47 final size:47
Alignment explanation
Indices: 102145172--102145393 Score: 192
Period size: 47 Copynumber: 4.7 Consensus size: 47
102145162 ACGTGGTAAG
* * *
102145172 GTGCCGGTGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGCCTCTCA--TCAA
* * ** * **
102145221 GT--CGATGCCATGTCACATACATGGTCTTACACTAACTATCATCTC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGCCTCTCATCAA
*
102145266 GCAGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTC-TCAA
1 G-TGCCGATGCCATGTCCCAGACATGGTCTTACACT-GC-CTC-TCATCAA
102145314 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGCCTCTCAT-AA
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGCCTCTCATCAA
* *
102145359 TGTGGCTGATG-CATGTGCCAGACAT-GTCTTACACT
1 -GT-GCCGATGCCATGTCCCAGACATGGTCTTACACT
102145394 AGCCAACAAC
Statistics
Matches: 141, Mismatches: 20, Indels: 27
0.75 0.11 0.14
Matches are distributed among these distances:
45 7 0.05
46 31 0.22
47 74 0.52
48 25 0.18
49 4 0.03
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGCCTCTCATCAA
Found at i:102155385 original size:13 final size:13
Alignment explanation
Indices: 102155341--102155388 Score: 80
Period size: 13 Copynumber: 3.8 Consensus size: 13
102155331 CCAAGCTAGG
*
102155341 CATGGCTGTGCGA
1 CATGGCCGTGCGA
102155354 CATGGCC-TGCGA
1 CATGGCCGTGCGA
102155366 CATGGCCGTGCGA
1 CATGGCCGTGCGA
102155379 CATGGCCGTG
1 CATGGCCGTG
102155389 TGCCACACAC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
12 12 0.36
13 21 0.64
ACGTcount: A:0.15, C:0.29, G:0.38, T:0.19
Consensus pattern (13 bp):
CATGGCCGTGCGA
Found at i:102157296 original size:20 final size:22
Alignment explanation
Indices: 102157266--102157315 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 22
102157256 TCCTCCTATT
102157266 TTTTA-TTTATTCTTA-TTTTC
1 TTTTAGTTTATTCTTATTTTTC
*
102157286 -TTTAGTTTATTTTTATTTTTC
1 TTTTAGTTTATTCTTATTTTTC
102157307 TTTTAGTTT
1 TTTTAGTTT
102157316 TTATTTTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 4 0.15
20 9 0.35
21 5 0.19
22 8 0.31
ACGTcount: A:0.14, C:0.06, G:0.04, T:0.76
Consensus pattern (22 bp):
TTTTAGTTTATTCTTATTTTTC
Found at i:102157304 original size:5 final size:5
Alignment explanation
Indices: 102157266--102157351 Score: 50
Period size: 6 Copynumber: 16.0 Consensus size: 5
102157256 TCCTCCTATT
* * *
102157266 TTTTA -TTTA TTCTTA TTTT- CTTTA GTTTA TTTTTA TTTTTC TTTTA
1 TTTTA TTTTA TT-TTA TTTTA TTTTA TTTTA -TTTTA -TTTTA TTTTA
*
102157312 GTTTTTA TTTTCA TTTCAA TTTTA TTATTA TTTTA TTTTA
1 --TTTTA TTTT-A TTT-TA TTTTA TT-TTA TTTTA TTTTA
102157352 AAAGACATAT
Statistics
Matches: 65, Mismatches: 7, Indels: 18
0.72 0.08 0.20
Matches are distributed among these distances:
4 7 0.11
5 26 0.40
6 27 0.42
7 5 0.08
ACGTcount: A:0.19, C:0.06, G:0.02, T:0.73
Consensus pattern (5 bp):
TTTTA
Found at i:102157310 original size:11 final size:11
Alignment explanation
Indices: 102157291--102157350 Score: 57
Period size: 12 Copynumber: 5.2 Consensus size: 11
102157281 TTTTCTTTAG
102157291 TTTATTTTTATT
1 TTTA-TTTTATT
*
102157303 TTTCTTTTAGTT
1 TTTATTTTA-TT
102157315 TTTATTTTCATT
1 TTTATTTT-ATT
**
102157327 TCAATTTTATT
1 TTTATTTTATT
*
102157338 ATTATTTTATT
1 TTTATTTTATT
102157349 TT
1 TT
102157351 AAAAGACATA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
11 17 0.45
12 20 0.53
13 1 0.03
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:102162745 original size:47 final size:48
Alignment explanation
Indices: 102162659--102162771 Score: 115
Period size: 47 Copynumber: 2.4 Consensus size: 48
102162649 TAAGGTGCTG
* * * * * **
102162659 ATGCCATATCCCAGATATGGTCTTACACTGGCTCACATCT-GAATTCA
1 ATGCCATGTCCCAGACATGGCCTTAAACTGACTCACATCTCGAAGCCA
* *
102162706 ATGCCATGTCCCAGACATGGCCTTAAACTGACT-ATCATCTCGCAGCCG
1 ATGCCATGTCCCAGACATGGCCTTAAACTGACTCA-CATCTCGAAGCCA
102162754 ATG-CATGTCCCAGACATG
1 ATGCCATGTCCCAGACATG
102162772 TCTTACATTG
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
46 1 0.02
47 48 0.87
48 6 0.11
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGCCTTAAACTGACTCACATCTCGAAGCCA
Found at i:102164099 original size:26 final size:27
Alignment explanation
Indices: 102164063--102164122 Score: 86
Period size: 26 Copynumber: 2.2 Consensus size: 27
102164053 ACTCAACTCT
*
102164063 AAATTTTTGGTCCCGAAACCAC-TTCC
1 AAATTTGTGGTCCCGAAACCACATTCC
*
102164089 AAATTTGTGGTCCTGAAACCACTATTCC
1 AAATTTGTGGTCCCGAAACCAC-ATTCC
102164117 AAATTT
1 AAATTT
102164123 TTCGGGCTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 20 0.67
28 10 0.33
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (27 bp):
AAATTTGTGGTCCCGAAACCACATTCC
Found at i:102183679 original size:16 final size:15
Alignment explanation
Indices: 102183652--102183681 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
102183642 TAAAATAAAA
102183652 AATAAAATAAAATGC
1 AATAAAATAAAATGC
102183667 AATAAAGATAAAATG
1 AATAAA-ATAAAATG
102183682 GCTAAAGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.67, C:0.03, G:0.10, T:0.20
Consensus pattern (15 bp):
AATAAAATAAAATGC
Found at i:102186537 original size:46 final size:46
Alignment explanation
Indices: 102186436--102186657 Score: 236
Period size: 46 Copynumber: 4.7 Consensus size: 46
102186426 TCGGTAAGGT
*
102186436 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GACTATCATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCTCATCTCG-AG
* * *
102186484 GCCGATGCATGTCCCAGACATGTCTCACACTAGCT-TACGTTTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGAG
* * *
102186530 GCCGATGCATGTCCCAGACATGTCTTACATTAGCTCTCATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
* * *
102186576 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGAG
* *
102186624 GCTGATTCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
102186658 CAACAACAAC
Statistics
Matches: 149, Mismatches: 18, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
45 2 0.01
46 73 0.49
47 44 0.30
48 29 0.19
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
Found at i:102192408 original size:19 final size:19
Alignment explanation
Indices: 102192384--102192425 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
102192374 TCAAGCGATC
*
102192384 AAAACTTTTGAATTTGATT
1 AAAACTTTTGAATTTGAGT
*
102192403 AAAACTTTTGGATTTGAGT
1 AAAACTTTTGAATTTGAGT
102192422 AAAA
1 AAAA
102192426 TGTAGATGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.40
Consensus pattern (19 bp):
AAAACTTTTGAATTTGAGT
Found at i:102195884 original size:35 final size:35
Alignment explanation
Indices: 102195822--102195912 Score: 121
Period size: 35 Copynumber: 2.6 Consensus size: 35
102195812 AATTGCGATG
* *
102195822 ACGATTTATAGGT-CATTCGGGTGACACCATGGAA
1 ACGATTTATAGGTCCTTTGGGGTGACACCATGGAA
* *
102195856 ACGGTTTATAGGTCCTTTGGGGTGACACCGTGGAA
1 ACGATTTATAGGTCCTTTGGGGTGACACCATGGAA
* *
102195891 ATGATTTATAGGTCTTTTGGGG
1 ACGATTTATAGGTCCTTTGGGG
102195913 CAACACCTTA
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
34 12 0.24
35 37 0.76
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.32
Consensus pattern (35 bp):
ACGATTTATAGGTCCTTTGGGGTGACACCATGGAA
Found at i:102196061 original size:68 final size:68
Alignment explanation
Indices: 102195952--102196228 Score: 340
Period size: 68 Copynumber: 4.1 Consensus size: 68
102195942 TCGAAATTGA
** * * * * *
102195952 AAGTCTGCCACTAAAATAAACATGGGATCATATTGTGTAAGACCATGGTTCGAATATGTCAACAT
1 AAGTCTGCCAGGACAATAAACATGGGATCATATTGTGTAAGACCATAGCTCGACTATGGCAACAT
102196017 ATG
66 ATG
* *
102196020 AAGTCTGCCAGGACAATAAACATGAGATCATATTCTGTAAGACCATAGCTCGACTATGGCAACAT
1 AAGTCTGCCAGGACAATAAACATGGGATCATATTGTGTAAGACCATAGCTCGACTATGGCAACAT
102196085 ATG
66 ATG
* * ** *
102196088 AAGTCTGCCAAGACAATAAACATGGGAACATATTGTGTAAGACTGTAGCTCGACTATGGAAACAT
1 AAGTCTGCCAGGACAATAAACATGGGATCATATTGTGTAAGACCATAGCTCGACTATGGCAACAT
102196153 ATG
66 ATG
* * * * * * * *
102196156 AAATCCT-CCAGGATAATAAACATGGAATCATATTGTGTAAGACCATAGGTAGGCTATGGTAATA
1 AAGT-CTGCCAGGACAATAAACATGGGATCATATTGTGTAAGACCATAGCTCGACTATGGCAACA
102196220 TATG
65 TATG
102196224 AAGTC
1 AAGTC
102196229 CACCAAGATG
Statistics
Matches: 179, Mismatches: 29, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
67 1 0.01
68 176 0.98
69 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.26
Consensus pattern (68 bp):
AAGTCTGCCAGGACAATAAACATGGGATCATATTGTGTAAGACCATAGCTCGACTATGGCAACAT
ATG
Found at i:102202011 original size:30 final size:30
Alignment explanation
Indices: 102201975--102202031 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
102201965 TGGGTAACCT
*
102201975 TGATATAATGTCAACTTGTGTGAGCAACAC
1 TGATATAATGTCAACTTATGTGAGCAACAC
*
102202005 TGATATACTGTCAACTTATGTGAGCAA
1 TGATATAATGTCAACTTATGTGAGCAA
102202032 TTTTTTCCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (30 bp):
TGATATAATGTCAACTTATGTGAGCAACAC
Found at i:102204712 original size:7 final size:8
Alignment explanation
Indices: 102204693--102204718 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
102204683 ATTTTTGTAC
102204693 AAAAAATT
1 AAAAAATT
102204701 AAAAAATT
1 AAAAAATT
102204709 AAAAAATT
1 AAAAAATT
102204717 AA
1 AA
102204719 TATAGACAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAAAATT
Found at i:102216747 original size:2 final size:2
Alignment explanation
Indices: 102216740--102216815 Score: 152
Period size: 2 Copynumber: 38.0 Consensus size: 2
102216730 TTATGTCATG
102216740 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
102216782 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
102216816 TCATCTATGC
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 74 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:102216973 original size:39 final size:39
Alignment explanation
Indices: 102216919--102216999 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
102216909 AATATGTGAA
102216919 TAAAACTTTATATGGCTTACCAATAAGCCAGGCCCGTAC
1 TAAAACTTTATATGGCTTACCAATAAGCCAGGCCCGTAC
102216958 TAAAACTTTATATGGCTTACCAATAAGCCAGGCCCGTAC
1 TAAAACTTTATATGGCTTACCAATAAGCCAGGCCCGTAC
102216997 TAA
1 TAA
102217000 TTAAGCCTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.26
Consensus pattern (39 bp):
TAAAACTTTATATGGCTTACCAATAAGCCAGGCCCGTAC
Found at i:102217534 original size:15 final size:15
Alignment explanation
Indices: 102217514--102217552 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
102217504 GGGGTGACCA
*
102217514 TGTGTGGCACACGAC
1 TGTGTGACACACGAC
102217529 TGTGTGACACACGAC
1 TGTGTGACACACGAC
*
102217544 TGCGTGACA
1 TGTGTGACA
102217553 GACCGTGTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.23, C:0.26, G:0.31, T:0.21
Consensus pattern (15 bp):
TGTGTGACACACGAC
Found at i:102218475 original size:13 final size:13
Alignment explanation
Indices: 102218443--102218486 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
102218433 CTTATCTATC
*
102218443 CATATAAACATTT
1 CATATAACCATTT
* *
102218456 CAAATAACCATCT
1 CATATAACCATTT
102218469 CATATAACCATTT
1 CATATAACCATTT
102218482 CATAT
1 CATAT
102218487 TACACCTTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.43, C:0.23, G:0.00, T:0.34
Consensus pattern (13 bp):
CATATAACCATTT
Found at i:102222655 original size:27 final size:28
Alignment explanation
Indices: 102222624--102222703 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 28
102222614 TTAATATTAC
*
102222624 ACATATTTATTTAATAATAAAATAAAA-
1 ACATATATATTTAATAATAAAATAAAAT
* * ***
102222651 ACATATGTAATTAATAA-GCGATAAAAT
1 ACATATATATTTAATAATAAAATAAAAT
*
102222678 A-ATATATATTTTATAATAAAATAAAA
1 ACATATATATTTAATAATAAAATAAAA
102222704 GTGATGTAAG
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
26 18 0.45
27 22 0.55
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (28 bp):
ACATATATATTTAATAATAAAATAAAAT
Found at i:102222811 original size:16 final size:16
Alignment explanation
Indices: 102222792--102222853 Score: 54
Period size: 16 Copynumber: 3.9 Consensus size: 16
102222782 ATGATAAGTA
102222792 ATATATAAAATAATAT
1 ATATATAAAATAATAT
* * *
102222808 ATATTTATAATAAAAT
1 ATATATAAAATAATAT
** *
102222824 ATAGGTAACATAATAT
1 ATATATAAAATAATAT
*
102222840 ATA-ATAATATAATA
1 ATATATAAAATAATA
102222854 AATAAAATAC
Statistics
Matches: 36, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
15 9 0.25
16 27 0.75
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (16 bp):
ATATATAAAATAATAT
Found at i:102224575 original size:16 final size:16
Alignment explanation
Indices: 102224554--102224585 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
102224544 TGCAGTGGCT
102224554 TTGGTTGAAAGTTTCA
1 TTGGTTGAAAGTTTCA
102224570 TTGGTTGAAAGTTTCA
1 TTGGTTGAAAGTTTCA
102224586 AGTGGCTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.25, T:0.44
Consensus pattern (16 bp):
TTGGTTGAAAGTTTCA
Found at i:102233223 original size:86 final size:88
Alignment explanation
Indices: 102233030--102233283 Score: 240
Period size: 86 Copynumber: 2.9 Consensus size: 88
102233020 AAGAAGGGTG
* * * * *
102233030 TAAAAAA--CTCTCAAAGTTTTTT-AAAAAAAGCAATTAAGTCTTTGTTTTTTTACACTCAATTG
1 TAAAAAAGGCTCTCAAACTTTTTTCAAAAAAAGTAATAAAGGCTATGTTTTTTTACACTCAATTG
*
102233092 AGTACTTGAACTTTTAAAATGCA
66 AGTACTTGAACTTTCAAAATGCA
* * * *
102233115 TAAAAAAGGCCCCCAAATTTTTTTCAAAAAAAGTAATAAAGGC-AT-TTTTTTTGCACTCAATT-
1 TAAAAAAGGCTCTCAAACTTTTTTCAAAAAAAGTAATAAAGGCTATGTTTTTTTACACTCAATTG
*
102233177 ATGTATTTGAACTTTCAAAATGCA
66 A-GTACTTGAACTTTCAAAATGCA
* ** *
102233201 TAAAAAAGGTTCTCAAAC-TTTTTCAAAAAAA-TAATTAAATCCCTACT-TTTTTTTACACTTAA
1 TAAAAAAGGCTCTCAAACTTTTTTCAAAAAAAGTAA-TAAA-GGCTA-TGTTTTTTTACACTCAA
* *
102233263 TTG-GATACTTAAACTGTCAAA
63 TTGAG-TACTTGAACTTTCAAA
102233284 TTACAAAAAA
Statistics
Matches: 138, Mismatches: 21, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
84 3 0.02
85 25 0.18
86 51 0.37
87 15 0.11
88 44 0.32
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.37
Consensus pattern (88 bp):
TAAAAAAGGCTCTCAAACTTTTTTCAAAAAAAGTAATAAAGGCTATGTTTTTTTACACTCAATTG
AGTACTTGAACTTTCAAAATGCA
Found at i:102233443 original size:9 final size:9
Alignment explanation
Indices: 102233431--102233551 Score: 50
Period size: 9 Copynumber: 12.9 Consensus size: 9
102233421 TCAATAAATT
102233431 TTATAAAAA
1 TTATAAAAA
**
102233440 TTATTAAATT
1 TTA-TAAAAA
102233450 TTAATAAAAA
1 TT-ATAAAAA
102233460 -TATAAAAA
1 TTATAAAAA
102233468 TCGTA-AAAAA
1 T--TATAAAAA
*
102233478 TTAGAAAAA
1 TTATAAAAA
*
102233487 TCATAAAAA
1 TTATAAAAA
**
102233496 CCATAAAAA
1 TTATAAAAA
**
102233505 -TATAAATTTT
1 TTATAAA--AA
**
102233515 TTATAAATT
1 TTATAAAAA
102233524 TTATAAAAAA
1 TTAT-AAAAA
*
102233534 TTGTAAAAAA
1 TTAT-AAAAA
102233544 TTATAAAA
1 TTATAAAA
102233552 TATACAGAAA
Statistics
Matches: 88, Mismatches: 14, Indels: 20
0.72 0.11 0.16
Matches are distributed among these distances:
8 14 0.16
9 34 0.39
10 31 0.35
11 9 0.10
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.34
Consensus pattern (9 bp):
TTATAAAAA
Found at i:102233456 original size:20 final size:20
Alignment explanation
Indices: 102233413--102233460 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
102233403 AATGTTAAAA
102233413 AATAAAAATCAATAAATTTT
1 AATAAAAATCAATAAATTTT
* *
102233433 -ATAAAAATTATTAAATTTT
1 AATAAAAATCAATAAATTTT
102233452 AATAAAAAT
1 AATAAAAAT
102233461 ATAAAAATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
AATAAAAATCAATAAATTTT
Found at i:102233468 original size:20 final size:20
Alignment explanation
Indices: 102233413--102233468 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
102233403 AATGTTAAAA
102233413 AATAAAAATCA-ATAAATTTT
1 AATAAAAAT-ATATAAATTTT
102233433 -ATAAAAAT-TATTAAATTTT
1 AATAAAAATATA-TAAATTTT
*
102233452 AATAAAAATATAAAAAT
1 AATAAAAATATATAAAT
102233469 CGTAAAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
18 1 0.03
19 16 0.52
20 12 0.39
21 2 0.06
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
AATAAAAATATATAAATTTT
Found at i:102233476 original size:18 final size:18
Alignment explanation
Indices: 102233455--102233510 Score: 60
Period size: 19 Copynumber: 3.1 Consensus size: 18
102233445 AAATTTTAAT
*
102233455 AAAAATATAAAAATCGTA
1 AAAAATATAAAAATCATA
*
102233473 AAAAATTAGAAAAATCATA
1 AAAAA-TATAAAAATCATA
**
102233492 AAAACCATAAAAAT-ATA
1 AAAAATATAAAAATCATA
102233509 AA
1 AA
102233511 TTTTTTATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
17 5 0.16
18 12 0.38
19 15 0.47
ACGTcount: A:0.70, C:0.07, G:0.04, T:0.20
Consensus pattern (18 bp):
AAAAATATAAAAATCATA
Found at i:102233572 original size:40 final size:39
Alignment explanation
Indices: 102233524--102233631 Score: 105
Period size: 40 Copynumber: 2.8 Consensus size: 39
102233514 TTTATAAATT
*
102233524 TTAT-AAAAAATTGTAAAAAATTATAAAAT-ATACAGAAA
1 TTATAAAAAAAATGTAAAAAATTATAAAATCATA-AGAAA
* * ** * *
102233562 TATAGAAAAAAAATATAAAATTTTATAAAGTCGTAAGAAA
1 T-TATAAAAAAAATGTAAAAAATTATAAAATCATAAGAAA
102233602 TTATAAAAAAAATGTAAAGAAA-TATAAAAT
1 TTATAAAAAAAATGTAAA-AAATTATAAAAT
102233632 TTGTAATAAA
Statistics
Matches: 54, Mismatches: 12, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
38 1 0.02
39 24 0.44
40 27 0.50
41 2 0.04
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (39 bp):
TTATAAAAAAAATGTAAAAAATTATAAAATCATAAGAAA
Found at i:102233885 original size:29 final size:28
Alignment explanation
Indices: 102233843--102233943 Score: 82
Period size: 29 Copynumber: 3.5 Consensus size: 28
102233833 TACGTTTTAT
102233843 TTTTTTATGA-TTTTTATAAGATTTTACAA
1 TTTTTTAT-ATTTTTTATAAGATTTTA-AA
* *
102233872 TTTTTTATATTTTTT-TACGATTTCTATAT
1 TTTTTTATATTTTTTATAAGATTT-TA-AA
* *
102233901 TTTTTTCTACTTTTTTAATAA-AATTTAAA
1 TTTTTTATA-TTTTTT-ATAAGATTTTAAA
*
102233930 TATTTTATATTTTT
1 TTTTTTATATTTTT
102233944 ATTAAAATTT
Statistics
Matches: 58, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
28 13 0.22
29 32 0.55
30 8 0.14
31 3 0.05
32 2 0.03
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (28 bp):
TTTTTTATATTTTTTATAAGATTTTAAA
Found at i:102233887 original size:20 final size:19
Alignment explanation
Indices: 102233864--102233906 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
102233854 TTTTATAAGA
*
102233864 TTTTACAATTTTTTATATTT
1 TTTTACAA-TTTCTATATTT
*
102233884 TTTTACGATTTCTATATTT
1 TTTTACAATTTCTATATTT
102233903 TTTT
1 TTTT
102233907 CTACTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.70
Consensus pattern (19 bp):
TTTTACAATTTCTATATTT
Found at i:102233953 original size:19 final size:19
Alignment explanation
Indices: 102233925--102233981 Score: 57
Period size: 20 Copynumber: 3.1 Consensus size: 19
102233915 TTAATAAAAT
102233925 TTAAATATTTTATATTTTTA
1 TTAAA-ATTTTATATTTTTA
*
102233945 TTAAAATTTAATAGTTTTTA
1 TTAAAATTTTATA-TTTTTA
*
102233965 -T-AACTTTTAT-TTTTTA
1 TTAAAATTTTATATTTTTA
102233981 T
1 T
102233982 AATTTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
16 6 0.19
18 7 0.22
19 8 0.25
20 11 0.34
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (19 bp):
TTAAAATTTTATATTTTTA
Found at i:102238909 original size:20 final size:19
Alignment explanation
Indices: 102238886--102238932 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
102238876 TATTTCTTAA
102238886 AATTAAAACTCAATTCTACC
1 AATTAAAACTCAATT-TACC
* *
102238906 AATTCAAAACTCCATTTAGC
1 AATT-AAAACTCAATTTACC
102238926 AATTAAA
1 AATTAAA
102238933 CATGAATTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 11 0.46
21 10 0.42
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.30
Consensus pattern (19 bp):
AATTAAAACTCAATTTACC
Found at i:102241879 original size:23 final size:21
Alignment explanation
Indices: 102241853--102241898 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
102241843 TTTTGAGCAA
* *
102241853 TTTAATTTTTTCTTTTATGTTCT
1 TTTAACTTCTTCTTTT-T-TTCT
102241876 TTTAACTTCTTCTTTTTTTCT
1 TTTAACTTCTTCTTTTTTTCT
102241897 TT
1 TT
102241899 ATTTTCCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 1 0.05
23 14 0.67
ACGTcount: A:0.11, C:0.13, G:0.02, T:0.74
Consensus pattern (21 bp):
TTTAACTTCTTCTTTTTTTCT
Found at i:102242275 original size:14 final size:14
Alignment explanation
Indices: 102242252--102242292 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
102242242 TATATAAGTG
102242252 ATTAAAATATAATA
1 ATTAAAATATAATA
* *
102242266 TTTTAAATATAAATA
1 ATTAAAATAT-AATA
102242281 ATTAAAATATAA
1 ATTAAAATATAA
102242293 CTTAAAGCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
ATTAAAATATAATA
Found at i:102245016 original size:52 final size:52
Alignment explanation
Indices: 102244939--102245047 Score: 132
Period size: 52 Copynumber: 2.1 Consensus size: 52
102244929 CTACAGATTA
* * * * * *
102244939 TTAACTCTTCTAAGTAGTGTTTTTCTCATGTAA-ACCTGTTCTGCTCTTATTG
1 TTAACTCTTCTAAATAGTGTATTTCTCAAG-AATACCAGTTCTACTCCTATTG
102244991 TTAACT-TTCTAAATAGTGCTATTTCTCAAGAATACCAGTTCTACTCCTATTG
1 TTAACTCTTCTAAATAGTG-TATTTCTCAAGAATACCAGTTCTACTCCTATTG
102245043 TTAAC
1 TTAAC
102245048 CATAGTACTG
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
51 13 0.27
52 36 0.73
ACGTcount: A:0.25, C:0.20, G:0.11, T:0.44
Consensus pattern (52 bp):
TTAACTCTTCTAAATAGTGTATTTCTCAAGAATACCAGTTCTACTCCTATTG
Found at i:102245098 original size:51 final size:52
Alignment explanation
Indices: 102245031--102245129 Score: 164
Period size: 51 Copynumber: 1.9 Consensus size: 52
102245021 AATACCAGTT
*
102245031 CTACTCCTATTGTTAACCATAGT-ACTGATGCTTTTTCTCATGTAACACCAA
1 CTACTCCTATTGTTAACCATAGTAACTGATGCCTTTTCTCATGTAACACCAA
* *
102245082 CTACTCCTATTGTTAACCCTAGTAACTGGTGCCTTTTCTCATGTAACA
1 CTACTCCTATTGTTAACCATAGTAACTGATGCCTTTTCTCATGTAACA
102245130 GTTGTATTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
51 22 0.50
52 22 0.50
ACGTcount: A:0.25, C:0.26, G:0.11, T:0.37
Consensus pattern (52 bp):
CTACTCCTATTGTTAACCATAGTAACTGATGCCTTTTCTCATGTAACACCAA
Found at i:102249510 original size:23 final size:23
Alignment explanation
Indices: 102249481--102249526 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
102249471 TTTGCTAATC
*
102249481 ATCGTTTTTATTTAATTAATTTT
1 ATCGTTTTTATTCAATTAATTTT
102249504 ATCGTTTTTATTCAATTAATTTT
1 ATCGTTTTTATTCAATTAATTTT
102249527 CTAATACAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.63
Consensus pattern (23 bp):
ATCGTTTTTATTCAATTAATTTT
Found at i:102249617 original size:11 final size:11
Alignment explanation
Indices: 102249601--102249635 Score: 52
Period size: 11 Copynumber: 3.0 Consensus size: 11
102249591 TTTAAATTAA
102249601 ATTATTTAAAT
1 ATTATTTAAAT
102249612 ATTATTTAAATT
1 ATTATTTAAA-T
102249624 ATTATTTTAAAT
1 ATTA-TTTAAAT
102249636 TAAAAATTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 10 0.45
12 6 0.27
13 6 0.27
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
ATTATTTAAAT
Found at i:102258720 original size:10 final size:11
Alignment explanation
Indices: 102258681--102258720 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
102258671 AATTAAATTT
**
102258681 TAATTTTTTTA
1 TAATTTTTAAA
102258692 TAATTTTTAAA
1 TAATTTTTAAA
102258703 TAATTTTTAAA
1 TAATTTTTAAA
*
102258714 TGATTTT
1 TAATTTT
102258721 GAAGAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (11 bp):
TAATTTTTAAA
Found at i:102270929 original size:31 final size:30
Alignment explanation
Indices: 102270894--102270963 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 30
102270884 ATTTTAAAAA
102270894 TAATATTA-CTTTAATAGT-TTAATAATTAATT
1 TAATATTATC-TTAATAGTATT--TAATTAATT
*
102270925 TAATACTTATCTTAATAGTATTTTATTAATT
1 TAATA-TTATCTTAATAGTATTTAATTAATT
102270956 TAATATTA
1 TAATATTA
102270964 AAGTGATTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
30 3 0.09
31 18 0.51
32 11 0.31
33 3 0.09
ACGTcount: A:0.40, C:0.04, G:0.03, T:0.53
Consensus pattern (30 bp):
TAATATTATCTTAATAGTATTTAATTAATT
Found at i:102279822 original size:27 final size:27
Alignment explanation
Indices: 102279792--102279932 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
102279782 GTGACGAAGT
102279792 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
*
102279819 CACCAGA-ACAGATATATGTGACAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
102279846 CACCAGAT-CAGATAATCGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
102279873 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
102279900 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
102279927 CACCAG
1 CACCAG
102279933 GACGCTTCCT
Statistics
Matches: 100, Mismatches: 7, Indels: 14
0.83 0.06 0.12
Matches are distributed among these distances:
26 10 0.10
27 86 0.86
28 4 0.04
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.17
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:102279867 original size:54 final size:54
Alignment explanation
Indices: 102279792--102279932 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
102279782 GTGACGAAGT
*
102279792 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGACAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGACAGAGC
* *
102279846 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGACAGAGC
102279900 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
102279933 GACGCTTCCT
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 77 0.94
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGACAGAGC
Found at i:102286902 original size:27 final size:27
Alignment explanation
Indices: 102286854--102287011 Score: 182
Period size: 27 Copynumber: 5.9 Consensus size: 27
102286844 GCGAGGCTGC
* *
102286854 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
102286881 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
102286907 CAGATATATGTGGCAGAGCCACCATAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
102286934 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
102286961 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
102286988 CAGATAATTGTGGCATAGCCACCA
1 CAGAT-ATTGTGGCAGAGCCACCA
102287012 AGACGCTTCA
Statistics
Matches: 114, Mismatches: 9, Indels: 16
0.82 0.06 0.12
Matches are distributed among these distances:
26 10 0.09
27 99 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:102286954 original size:54 final size:54
Alignment explanation
Indices: 102286872--102287011 Score: 237
Period size: 54 Copynumber: 2.6 Consensus size: 54
102286862 GTGACGAAGT
*
102286872 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
102286926 CACCATATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
102286980 CACCAGATCAGATAATTGTGGCATAGCCACCA
1 CACCAGATCAGATAATTGTGGCATAGCCACCA
102287012 AGACGCTTCA
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 5 0.06
54 75 0.94
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:102289222 original size:19 final size:20
Alignment explanation
Indices: 102289200--102289246 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 20
102289190 TGATGGACTT
* *
102289200 TAATGCATATG-ATGTAATG
1 TAATGCAAATGTATGAAATG
*
102289219 TAATACAAATGTATGAAATG
1 TAATGCAAATGTATGAAATG
102289239 -AATGCAAA
1 TAATGCAAA
102289247 AAGGTGTCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.47, C:0.06, G:0.17, T:0.30
Consensus pattern (20 bp):
TAATGCAAATGTATGAAATG
Found at i:102290538 original size:7 final size:7
Alignment explanation
Indices: 102290526--102290586 Score: 95
Period size: 7 Copynumber: 8.6 Consensus size: 7
102290516 CACCTTTTGT
102290526 AACCCTA
1 AACCCTA
102290533 AACCCTAA
1 AACCCT-A
102290541 AACCCTA
1 AACCCTA
102290548 AACCCTA
1 AACCCTA
102290555 AACCCTA
1 AACCCTA
**
102290562 AACTTTA
1 AACCCTA
102290569 AACCCTA
1 AACCCTA
102290576 AACCCTA
1 AACCCTA
102290583 AACC
1 AACC
102290587 AAATTGGGTC
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
7 42 0.86
8 7 0.14
ACGTcount: A:0.44, C:0.39, G:0.00, T:0.16
Consensus pattern (7 bp):
AACCCTA
Found at i:102291421 original size:30 final size:30
Alignment explanation
Indices: 102291387--102291447 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
102291377 TTTTCGAGCC
*
102291387 TAGGGGTAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
102291417 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
102291447 T
1 T
102291448 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.05, G:0.23, T:0.33
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:102292263 original size:64 final size:63
Alignment explanation
Indices: 102292182--102292365 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 63
102292172 AGACATTATG
* *
102292182 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTG-TACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
102292246 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-G-TACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
102292311 AA
62 AA
* * *
102292313 ACTG--GCTAGGTCACATGGGTTGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGG-TGTACTATGTGTACACCATGTAG-ACAAGAGAGC
102292366 CGAACTATAT
Statistics
Matches: 98, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 7 0.07
66 16 0.16
67 32 0.33
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:102300718 original size:47 final size:47
Alignment explanation
Indices: 102300655--102301101 Score: 614
Period size: 47 Copynumber: 9.4 Consensus size: 47
102300645 CCCTTCGGGA
* * *
102300655 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
102300702 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
102300749 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
102300796 CTTATCACACATATACA-TGTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * * *
102300843 CTTATCACACATACACA-TGTTCACATCCATAACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
102300890 CTTATCACGCATATATATACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCA--CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
102300939 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
102300986 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
102301033 CTTATCACGCATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
102301082 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
102301102 GTACATCAAT
Statistics
Matches: 364, Mismatches: 28, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
46 2 0.01
47 281 0.77
49 79 0.22
50 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:102300965 original size:143 final size:143
Alignment explanation
Indices: 102300655--102301096 Score: 694
Period size: 143 Copynumber: 3.1 Consensus size: 143
102300645 CCCTTCGGGA
* * * * *
102300655 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACA
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA
* *
102300719 CT-TTCACATTCATCACATTGGCCATTCGGCCTTAT--CTCATATATACACTTTCACATTCATCA
65 -TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACTTTCACATTCATCA
*
102300781 CATTGGCCATTCGAC
129 CATTGGCCATTCGGC
* *
102300796 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGACCTTATCACACATACACAT
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACAT
* *
102300861 GTTCACATCCATAACATTGGCCATTCGGCCTTATCACGCATATATATACTTTCACATTCATCACA
66 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACTTTCACATTCATCACA
102300926 TTGGCCATTCGGC
131 TTGGCCATTCGGC
* *
102300939 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACAT
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACAT
102301004 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACTTTCACATTCATCACA
66 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACTTTCACATTCATCACA
*
102301069 TTGGCCACTCGGC
131 TTGGCCATTCGGC
*
102301082 CCTATCACATATATA
1 CTTATCACATATATA
102301097 TACTTGTACA
Statistics
Matches: 275, Mismatches: 22, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
140 2 0.01
141 86 0.31
143 187 0.68
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACAT
GTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACTTTCACATTCATCACA
TTGGCCATTCGGC
Found at i:102304394 original size:25 final size:25
Alignment explanation
Indices: 102304357--102304407 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
102304347 AAGGAATTCG
102304357 CACACACACAGTGCCTCTAA-TCATT
1 CACACACACAGTG-CTCTAATTCATT
*
102304382 CACACACATAGTGCTCTAATTCATT
1 CACACACACAGTGCTCTAATTCATT
102304407 C
1 C
102304408 GTTATTACAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.27
Consensus pattern (25 bp):
CACACACACAGTGCTCTAATTCATT
Found at i:102304616 original size:40 final size:40
Alignment explanation
Indices: 102304584--102304851 Score: 385
Period size: 40 Copynumber: 6.7 Consensus size: 40
102304574 CCAGCATGAT
* * * *
102304584 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
102304624 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
102304664 TGCTCTTCAGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
102304704 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
102304744 TGCTCTTCGGAACTTAGCCTGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
102304784 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
102304824 TGCTCTTCGGGAATTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
102304852 GTCGAGACCT
Statistics
Matches: 203, Mismatches: 25, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
39 4 0.02
40 199 0.98
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:102304974 original size:38 final size:38
Alignment explanation
Indices: 102304905--102304979 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
102304895 GAATTTTAAT
*
102304905 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
102304943 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
102304980 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:102307462 original size:22 final size:22
Alignment explanation
Indices: 102307434--102307509 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
102307424 TTCCACATCC
102307434 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
102307456 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
102307480 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
102307503 ATCACAT
1 ATCACAT
102307510 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:102307469 original size:47 final size:47
Alignment explanation
Indices: 102307406--102307991 Score: 860
Period size: 47 Copynumber: 12.4 Consensus size: 47
102307396 CCCTTCGGGA
* * *
102307406 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
102307453 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
102307500 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
102307547 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
102307594 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
102307641 CTTATCACACATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
102307688 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
102307735 CTTATCACGCATATATATACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCA--CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
102307784 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
102307831 CTTATCACACATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
102307878 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
** * *
102307925 CTTATCACGCATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
102307972 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
102307992 GTACATCAAT
Statistics
Matches: 505, Mismatches: 28, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
46 2 0.00
47 460 0.91
48 1 0.00
49 41 0.08
50 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:102311980 original size:17 final size:17
Alignment explanation
Indices: 102311958--102311990 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
102311948 CAGCCAATAC
*
102311958 ACCATATTTTGTCTGGT
1 ACCATAATTTGTCTGGT
102311975 ACCATAATTTGTCTGG
1 ACCATAATTTGTCTGG
102311991 CATGGGTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.42
Consensus pattern (17 bp):
ACCATAATTTGTCTGGT
Found at i:102314281 original size:18 final size:18
Alignment explanation
Indices: 102314255--102314291 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
102314245 TAATAATCTT
102314255 ATTACAAAAATTGTAAAA
1 ATTACAAAAATTGTAAAA
*
102314273 ATTATAAAAATTGTAAAA
1 ATTACAAAAATTGTAAAA
102314291 A
1 A
102314292 AAATATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (18 bp):
ATTACAAAAATTGTAAAA
Found at i:102314290 original size:8 final size:9
Alignment explanation
Indices: 102314260--102314291 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
102314250 ATCTTATTAC
102314260 AAAAATTGT
1 AAAAATTGT
*
102314269 AAAAATTAT
1 AAAAATTGT
102314278 AAAAATTGT
1 AAAAATTGT
102314287 AAAAA
1 AAAAA
102314292 AAATATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (9 bp):
AAAAATTGT
Done.